Query psy16474
Match_columns 264
No_of_seqs 252 out of 1311
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 22:15:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16474.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16474hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04408 RhoGAP_GMIP RhoGAP_GMI 99.9 4E-26 8.6E-31 198.4 11.5 99 164-263 1-99 (200)
2 cd04383 RhoGAP_srGAP RhoGAP_sr 99.9 5.5E-26 1.2E-30 195.7 11.9 102 162-263 1-103 (188)
3 cd04387 RhoGAP_Bcr RhoGAP_Bcr: 99.9 1.1E-25 2.3E-30 195.2 11.3 100 164-263 1-101 (196)
4 cd04375 RhoGAP_DLC1 RhoGAP_DLC 99.9 1.1E-25 2.4E-30 198.3 11.5 103 160-263 1-103 (220)
5 cd04372 RhoGAP_chimaerin RhoGA 99.9 1.3E-25 2.9E-30 194.1 11.5 101 164-264 1-103 (194)
6 cd04403 RhoGAP_ARHGAP27_15_12_ 99.9 1.5E-25 3.2E-30 192.8 11.4 101 164-264 1-102 (187)
7 cd04384 RhoGAP_CdGAP RhoGAP_Cd 99.9 1.5E-25 3.3E-30 194.0 11.6 101 162-263 1-103 (195)
8 cd04378 RhoGAP_GMIP_PARG1 RhoG 99.9 1.5E-25 3.2E-30 195.1 11.2 99 164-263 1-99 (203)
9 cd04409 RhoGAP_PARG1 RhoGAP_PA 99.9 1.6E-25 3.4E-30 196.2 11.3 99 164-263 1-99 (211)
10 cd04381 RhoGap_RalBP1 RhoGap_R 99.9 4.3E-25 9.4E-30 189.2 11.7 98 164-263 1-102 (182)
11 cd04407 RhoGAP_myosin_IXB RhoG 99.9 5.1E-25 1.1E-29 189.4 11.4 98 164-263 1-98 (186)
12 cd04379 RhoGAP_SYD1 RhoGAP_SYD 99.9 5.4E-25 1.2E-29 192.3 11.2 100 164-263 1-104 (207)
13 cd04406 RhoGAP_myosin_IXA RhoG 99.9 6.5E-25 1.4E-29 188.8 11.4 98 164-263 1-98 (186)
14 cd04386 RhoGAP_nadrin RhoGAP_n 99.9 9.4E-25 2E-29 190.0 12.1 103 161-263 2-105 (203)
15 cd04397 RhoGAP_fLRG1 RhoGAP_fL 99.9 8E-25 1.7E-29 191.9 11.7 101 164-264 1-112 (213)
16 cd04390 RhoGAP_ARHGAP22_24_25 99.9 1.4E-24 3.1E-29 188.2 12.0 101 162-263 1-105 (199)
17 cd04373 RhoGAP_p190 RhoGAP_p19 99.9 3.1E-24 6.7E-29 184.4 11.0 98 164-263 1-99 (185)
18 cd04391 RhoGAP_ARHGAP18 RhoGAP 99.9 3.9E-24 8.4E-29 187.9 11.5 101 163-263 1-107 (216)
19 cd04396 RhoGAP_fSAC7_BAG7 RhoG 99.9 5.8E-24 1.3E-28 188.0 11.7 101 163-263 1-118 (225)
20 KOG1451|consensus 99.9 1.3E-24 2.8E-29 208.2 6.6 157 95-264 312-477 (812)
21 cd04398 RhoGAP_fRGD1 RhoGAP_fR 99.9 1.5E-23 3.3E-28 180.6 11.5 101 164-264 1-105 (192)
22 cd04402 RhoGAP_ARHGAP20 RhoGAP 99.9 1.7E-23 3.8E-28 180.6 11.8 97 163-263 1-97 (192)
23 KOG4270|consensus 99.9 4.6E-24 1E-28 207.9 8.5 150 16-263 99-249 (577)
24 cd04389 RhoGAP_KIAA1688 RhoGAP 99.9 2.1E-23 4.5E-28 179.6 11.5 98 164-263 1-104 (187)
25 cd04395 RhoGAP_ARHGAP21 RhoGAP 99.9 3.4E-23 7.5E-28 179.2 11.7 101 163-263 1-104 (196)
26 cd04377 RhoGAP_myosin_IX RhoGA 99.9 5.2E-23 1.1E-27 176.8 11.7 98 164-263 1-98 (186)
27 cd04400 RhoGAP_fBEM3 RhoGAP_fB 99.9 5E-23 1.1E-27 177.4 11.6 101 163-263 1-109 (190)
28 cd04393 RhoGAP_FAM13A1a RhoGAP 99.9 5.4E-23 1.2E-27 177.0 11.4 101 162-263 1-103 (189)
29 cd04394 RhoGAP-ARHGAP11A RhoGA 99.9 7.5E-23 1.6E-27 178.1 11.6 97 163-263 1-100 (202)
30 cd04399 RhoGAP_fRGD2 RhoGAP_fR 99.9 9.7E-23 2.1E-27 178.7 10.1 99 164-262 1-108 (212)
31 cd04404 RhoGAP-p50rhoGAP RhoGA 99.9 2.8E-22 6E-27 173.3 12.3 102 160-263 2-106 (195)
32 cd04385 RhoGAP_ARAP RhoGAP_ARA 99.9 3.3E-22 7.2E-27 171.6 11.3 98 165-263 2-100 (184)
33 cd04382 RhoGAP_MgcRacGAP RhoGA 99.9 2E-22 4.3E-27 174.3 9.5 95 169-264 7-101 (193)
34 cd04388 RhoGAP_p85 RhoGAP_p85: 99.9 4.3E-22 9.2E-27 172.9 10.5 94 167-263 4-97 (200)
35 cd04376 RhoGAP_ARHGAP6 RhoGAP_ 99.9 1.5E-21 3.3E-26 170.4 10.7 88 175-263 5-92 (206)
36 cd04380 RhoGAP_OCRL1 RhoGAP_OC 99.8 9.4E-21 2E-25 166.9 10.5 101 160-263 9-135 (220)
37 cd04392 RhoGAP_ARHGAP19 RhoGAP 99.8 7.1E-21 1.5E-25 166.4 9.5 91 164-263 1-92 (208)
38 KOG2200|consensus 99.8 5.7E-20 1.2E-24 176.7 9.8 141 122-262 251-400 (674)
39 cd04374 RhoGAP_Graf RhoGAP_Gra 99.8 6.9E-20 1.5E-24 159.7 9.4 84 180-264 29-118 (203)
40 KOG4269|consensus 99.8 3.3E-19 7.1E-24 177.4 6.0 101 161-261 897-1004(1112)
41 smart00324 RhoGAP GTPase-activ 99.8 3.6E-18 7.8E-23 144.1 10.1 86 178-263 2-87 (174)
42 KOG1450|consensus 99.8 3.6E-18 7.7E-23 167.7 11.1 104 160-263 453-557 (650)
43 PF00620 RhoGAP: RhoGAP domain 99.7 1.1E-17 2.3E-22 137.7 10.5 84 180-263 1-84 (151)
44 KOG4407|consensus 99.7 2.8E-18 6.2E-23 175.1 6.9 106 159-264 1153-1263(1973)
45 KOG2710|consensus 99.7 1.1E-17 2.5E-22 157.8 9.5 106 159-264 62-182 (412)
46 cd00159 RhoGAP RhoGAP: GTPase- 99.7 4.4E-17 9.6E-22 135.7 9.7 83 180-263 1-83 (169)
47 KOG1453|consensus 99.6 7.7E-16 1.7E-20 159.5 8.3 102 162-264 601-702 (918)
48 KOG3564|consensus 99.6 5.1E-15 1.1E-19 140.0 9.0 91 173-264 356-446 (604)
49 KOG4406|consensus 99.6 2.8E-15 6.1E-20 140.0 5.4 99 160-261 250-353 (467)
50 KOG1452|consensus 99.5 8.9E-15 1.9E-19 132.7 6.4 103 161-263 182-286 (442)
51 cd07618 BAR_Rich1 The Bin/Amph 99.5 1.3E-14 2.8E-19 129.5 5.7 70 19-88 177-246 (246)
52 cd07619 BAR_Rich2 The Bin/Amph 99.5 4E-14 8.7E-19 126.3 5.7 70 19-88 179-248 (248)
53 KOG1117|consensus 99.5 1.1E-13 2.4E-18 138.0 9.3 98 165-263 714-812 (1186)
54 cd07620 BAR_SH3BP1 The Bin/Amp 99.3 2.5E-12 5.4E-17 114.5 6.8 52 19-70 188-239 (257)
55 cd07595 BAR_RhoGAP_Rich-like T 99.3 3E-12 6.6E-17 114.6 5.3 70 19-88 175-244 (244)
56 KOG4271|consensus 99.2 1.4E-11 3E-16 124.1 3.1 102 161-264 915-1017(1100)
57 cd04401 RhoGAP_fMSB1 RhoGAP_fM 98.7 3E-08 6.5E-13 86.2 8.0 82 181-262 8-101 (198)
58 cd04405 RhoGAP_BRCC3-like RhoG 98.6 1E-07 2.2E-12 84.3 7.0 102 162-263 20-136 (235)
59 KOG4724|consensus 98.4 7.2E-08 1.6E-12 95.0 2.2 103 156-262 75-177 (741)
60 KOG3565|consensus 98.0 4.9E-06 1.1E-10 83.7 4.1 87 176-263 215-303 (640)
61 KOG4370|consensus 97.9 1.5E-05 3.3E-10 75.5 4.9 105 159-263 47-194 (514)
62 cd07615 BAR_Endophilin_A3 The 97.5 0.00017 3.7E-09 63.8 6.1 55 19-73 167-221 (223)
63 cd07592 BAR_Endophilin_A The B 97.3 0.0005 1.1E-08 61.0 6.1 55 19-73 167-221 (223)
64 cd07613 BAR_Endophilin_A1 The 97.3 0.00057 1.2E-08 60.5 6.0 55 19-73 167-221 (223)
65 cd07614 BAR_Endophilin_A2 The 96.7 0.0036 7.8E-08 55.5 6.0 55 19-73 167-221 (223)
66 KOG4724|consensus 96.2 0.0098 2.1E-07 59.6 5.9 103 158-263 411-518 (741)
67 cd07593 BAR_MUG137_fungi The B 96.1 0.011 2.4E-07 52.2 5.6 49 19-67 159-207 (215)
68 PF08101 DUF1708: Domain of un 96.0 0.018 3.8E-07 55.7 6.8 84 179-262 8-103 (420)
69 cd01249 PH_oligophrenin Oligop 94.4 0.014 3E-07 45.8 0.4 46 98-143 54-103 (104)
70 smart00721 BAR BAR domain. 94.2 0.11 2.5E-06 45.2 5.9 50 20-69 188-238 (239)
71 cd07618 BAR_Rich1 The Bin/Amph 92.6 0.11 2.3E-06 46.9 3.2 40 132-171 207-246 (246)
72 cd07619 BAR_Rich2 The Bin/Amph 90.8 1.9 4.1E-05 39.0 9.1 38 134-171 211-248 (248)
73 PF00784 MyTH4: MyTH4 domain; 90.0 0.095 2.1E-06 41.3 0.1 78 35-114 20-99 (114)
74 KOG1118|consensus 89.1 1 2.3E-05 41.7 6.1 58 20-77 187-244 (366)
75 PF03114 BAR: BAR domain; Int 88.9 1.2 2.5E-05 37.9 6.1 49 20-68 179-228 (229)
76 cd07595 BAR_RhoGAP_Rich-like T 86.1 3.8 8.3E-05 36.8 7.9 38 134-171 207-244 (244)
77 cd07600 BAR_Gvp36 The Bin/Amph 84.9 2.1 4.5E-05 38.5 5.6 43 26-68 200-242 (242)
78 cd07616 BAR_Endophilin_B1 The 82.3 2.5 5.4E-05 37.7 5.0 38 28-65 189-226 (229)
79 KOG1453|consensus 81.9 0.33 7.2E-06 51.5 -0.9 99 163-261 462-570 (918)
80 KOG1449|consensus 78.0 0.94 2E-05 45.2 0.9 133 91-251 152-293 (670)
81 cd07594 BAR_Endophilin_B The B 67.2 13 0.00028 33.2 5.4 42 26-67 187-228 (229)
82 cd07617 BAR_Endophilin_B2 The 61.7 19 0.00041 32.0 5.4 39 29-67 181-219 (220)
83 PF10455 BAR_2: Bin/amphiphysi 61.3 18 0.00038 33.5 5.3 39 30-68 249-287 (289)
84 smart00139 MyTH4 Domain in Myo 60.7 3.5 7.5E-05 34.0 0.5 65 35-105 62-128 (144)
85 cd04386 RhoGAP_nadrin RhoGAP_n 50.0 17 0.00037 31.3 3.2 33 78-110 2-34 (203)
86 PF10456 BAR_3_WASP_bdg: WASP- 46.6 49 0.0011 29.7 5.6 42 25-66 192-234 (237)
87 cd07307 BAR The Bin/Amphiphysi 46.6 53 0.0011 26.5 5.5 45 21-65 147-192 (194)
88 cd07596 BAR_SNX The Bin/Amphip 37.9 87 0.0019 26.3 5.7 43 25-67 175-218 (218)
89 PF09088 MIF4G_like: MIF4G lik 29.2 24 0.00053 30.6 0.8 32 162-193 90-121 (191)
90 COG4835 Uncharacterized protei 28.5 37 0.00081 26.9 1.6 46 198-246 61-106 (124)
91 KOG4271|consensus 27.1 46 0.00099 35.6 2.4 77 179-255 371-456 (1100)
92 KOG4848|consensus 26.7 1.9E+02 0.0042 25.2 5.8 51 20-70 118-168 (225)
93 PF09325 Vps5: Vps5 C terminal 26.6 77 0.0017 27.3 3.5 34 34-67 203-236 (236)
94 PF05920 Homeobox_KN: Homeobox 26.4 52 0.0011 21.0 1.8 18 11-28 5-22 (40)
95 cd04375 RhoGAP_DLC1 RhoGAP_DLC 25.1 69 0.0015 28.1 2.9 33 78-110 2-34 (220)
96 PF15003 HAUS2: HAUS augmin-li 24.5 1.1E+02 0.0024 28.1 4.1 26 45-70 123-148 (277)
97 KOG3046|consensus 24.1 3.8E+02 0.0082 22.3 6.7 93 18-110 3-100 (147)
98 PF04316 FlgM: Anti-sigma-28 f 23.4 1.6E+02 0.0035 20.0 4.0 28 206-239 26-53 (57)
99 cd07669 BAR_SNX33 The Bin/Amph 22.3 2.2E+02 0.0048 25.1 5.5 43 25-67 163-206 (207)
100 PF05983 Med7: MED7 protein; 22.2 2.3E+02 0.0051 23.7 5.5 68 5-72 89-161 (162)
101 COG3647 Predicted membrane pro 21.9 32 0.00069 29.3 0.2 9 10-18 97-105 (205)
102 PF03792 PBC: PBC domain; Int 21.2 3.1E+02 0.0067 23.9 6.0 63 6-68 94-163 (191)
103 PF10552 ORF6C: ORF6C domain; 20.5 43 0.00093 26.3 0.6 40 3-42 48-87 (116)
No 1
>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.93 E-value=4e-26 Score=198.38 Aligned_cols=99 Identities=26% Similarity=0.496 Sum_probs=92.2
Q ss_pred CCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHHHHHHHH
Q psy16474 164 FCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYL 243 (264)
Q Consensus 164 FG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vaslLK~yL 243 (264)
||+||+.+.++++..||.+|.+|++||+++|+++|||||++|+..++++|++.+|.|... .+...+|+|+||++||.||
T Consensus 1 FGv~l~~l~~~~~~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~d~~~~~-~~~~~~~~h~va~lLK~fL 79 (200)
T cd04408 1 FGVDFSQLPRDFPEEVPFVVVRCTAEIENRALGVQGIYRISGSKARVEKLCQAFENGRDL-VDLSGHSPHDITSVLKHFL 79 (200)
T ss_pred CCCCHHHHHHhCCCCCChHHHHHHHHHHHcCCCCcceeeCCCcHHHHHHHHHHHhcCCCc-cCcccCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998632 2334579999999999999
Q ss_pred hcCCCCCCChHhHHHHHHhh
Q psy16474 244 RELPEPLLTYALYEDWLAAA 263 (264)
Q Consensus 244 ReLPePLit~~ly~~~i~a~ 263 (264)
|+||+||+|+++|+.|++++
T Consensus 80 ReLPePLi~~~~y~~~~~~~ 99 (200)
T cd04408 80 KELPEPVLPFQLYDDFIALA 99 (200)
T ss_pred HhCCCccCCHHHHHHHHHHH
Confidence 99999999999999999875
No 2
>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs. srGAPs are components of the intracellular part of Slit-Robo signalling pathway that is important for axon guidance and cell migration. srGAPs contain an N-terminal FCH domain, a central RhoGAP domain and a C-terminal SH3 domain; this SH3 domain interacts with the intracellular proline-rich-tail of the Roundabout receptor (Robo). This interaction with Robo then activates the rhoGAP domain which in turn inhibits Cdc42 activity. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific group
Probab=99.93 E-value=5.5e-26 Score=195.74 Aligned_cols=102 Identities=31% Similarity=0.547 Sum_probs=93.5
Q ss_pred CCCCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCC-CcCCCCHHHHHHHHH
Q psy16474 162 PMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFE-DALEYDAHVLAGVLK 240 (264)
Q Consensus 162 ~vFG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~-~~~~~D~h~vaslLK 240 (264)
.+||++|+++++.+|..||.+|.+|++||+++|+.+|||||++|+.++++++++.+|+|..... +...+|+|+||++||
T Consensus 1 k~FG~~L~~~~~~~~~~IP~~v~~~i~~l~~~gl~~EGIFRv~G~~~~i~~l~~~~d~g~~~~~~~~~~~d~~~va~lLK 80 (188)
T cd04383 1 KLFNGSLEEYIQDSGQAIPLVVESCIRFINLYGLQHQGIFRVSGSQVEVNDIKNAFERGEDPLADDQNDHDINSVAGVLK 80 (188)
T ss_pred CcCCccHHHHHHHCCCCCChHHHHHHHHHHHcCCCCCCeeecCCCHHHHHHHHHHHhcCCCccccccccccHHHHHHHHH
Confidence 3799999999999999999999999999999999999999999999999999999999864322 223569999999999
Q ss_pred HHHhcCCCCCCChHhHHHHHHhh
Q psy16474 241 LYLRELPEPLLTYALYEDWLAAA 263 (264)
Q Consensus 241 ~yLReLPePLit~~ly~~~i~a~ 263 (264)
.|||+||+||+|+++|+.|++++
T Consensus 81 ~fLReLPepLip~~~~~~~~~~~ 103 (188)
T cd04383 81 LYFRGLENPLFPKERFEDLMSCV 103 (188)
T ss_pred HHHHhCCCccCCHHHHHHHHHHH
Confidence 99999999999999999999875
No 3
>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins. Bcr is a multidomain protein with a variety of enzymatic functions. It contains a RhoGAP and a Rho GEF domain, a Ser/Thr kinase domain, an N-terminal oligomerization domain, and a C-terminal PDZ binding domain, in addition to PH and C2 domains. Bcr is a negative regulator of: i) RacGTPase, via the Rho GAP domain, ii) the Ras-Raf-MEK-ERK pathway, via phosphorylation of the Ras binding protein AF-6, and iii) the Wnt signaling pathway through binding beta-catenin. Bcr can form a complex with beta-catenin and Tcf1. The Wnt signaling pathway is involved in cell proliferation, differentiation, and cell renewal. Bcr was discovered as a fusion partner of Abl. The Bcr-Abl fusion is characteristic for a large majority of chronic myelogenous leukemias (CML). Small GTPases cluster into distinct families, and all act as molecular switch
Probab=99.93 E-value=1.1e-25 Score=195.19 Aligned_cols=100 Identities=31% Similarity=0.560 Sum_probs=92.1
Q ss_pred CCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCC-CCcCCCCHHHHHHHHHHH
Q psy16474 164 FCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKF-EDALEYDAHVLAGVLKLY 242 (264)
Q Consensus 164 FG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~-~~~~~~D~h~vaslLK~y 242 (264)
||+||+..+.+++..||.+|.+|+++|+++|+++|||||++|+.+++++|++.+|++..+. ......|+|+||++||.|
T Consensus 1 FGv~L~~~~~r~~~~IP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~f 80 (196)
T cd04387 1 FGVKISTVTKRERSKVPYIVRQCVEEVERRGMEEVGIYRISGVATDIQALKAAFDTNNKDVSVMLSEMDVNAIAGTLKLY 80 (196)
T ss_pred CCCCHHHHHHhcCCCCChHHHHHHHHHHHhCCCCCceEEeCCcHHHHHHHHHHHhCCCcccccccccCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999975432 233457999999999999
Q ss_pred HhcCCCCCCChHhHHHHHHhh
Q psy16474 243 LRELPEPLLTYALYEDWLAAA 263 (264)
Q Consensus 243 LReLPePLit~~ly~~~i~a~ 263 (264)
||+||+||||+++|+.|++++
T Consensus 81 LReLPePLip~~~y~~~~~~~ 101 (196)
T cd04387 81 FRELPEPLFTDELYPNFAEGI 101 (196)
T ss_pred HHhCCCccCCHHHHHHHHHHH
Confidence 999999999999999999875
No 4
>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.93 E-value=1.1e-25 Score=198.30 Aligned_cols=103 Identities=32% Similarity=0.450 Sum_probs=93.6
Q ss_pred CCCCCCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHHHH
Q psy16474 160 MKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVL 239 (264)
Q Consensus 160 ~~~vFG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vaslL 239 (264)
++++||+||+.++++.|..||.+|.+|++||+.+|+++|||||++|+.+++++|+..+|.+... .+....++|+||++|
T Consensus 1 ~~~vFGvpL~~~~~r~g~~IP~~i~~~i~~L~~~gl~~eGIFR~sG~~~~i~~L~~~~d~~~~~-~~~~~~~~~~va~lL 79 (220)
T cd04375 1 DKNVFGVPLLVNLQRTGQPLPRSIQQAMRWLRNNALDQVGLFRKSGVKSRIQKLRSMIESSTDN-VNYDGQQAYDVADML 79 (220)
T ss_pred CCCEecCcHHHHHhhcCCCCChHHHHHHHHHHHhCCCccceeecCCcHHHHHHHHHHHhcCCCc-cCcccccHHHHHHHH
Confidence 3689999999999999999999999999999999999999999999999999999999986422 233456999999999
Q ss_pred HHHHhcCCCCCCChHhHHHHHHhh
Q psy16474 240 KLYLRELPEPLLTYALYEDWLAAA 263 (264)
Q Consensus 240 K~yLReLPePLit~~ly~~~i~a~ 263 (264)
|.|||+||+||+|+++|+.|+++.
T Consensus 80 K~flReLPePLlt~~l~~~fi~~~ 103 (220)
T cd04375 80 KQYFRDLPEPLLTNKLSETFIAIF 103 (220)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHH
Confidence 999999999999999999999864
No 5
>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins. Chimaerins are a family of phorbolester- and diacylglycerol-responsive GAPs specific for the Rho-like GTPase Rac. Chimaerins exist in two alternative splice forms that each contain a C-terminal GAP domain, and a central C1 domain which binds phorbol esters, inducing a conformational change that activates the protein; one splice form is lacking the N-terminal Src homology-2 (SH2) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GT
Probab=99.93 E-value=1.3e-25 Score=194.12 Aligned_cols=101 Identities=29% Similarity=0.574 Sum_probs=90.8
Q ss_pred CCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhcc--CCCCCcCCCCHHHHHHHHHH
Q psy16474 164 FCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHC--IKFEDALEYDAHVLAGVLKL 241 (264)
Q Consensus 164 FG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~--~~~~~~~~~D~h~vaslLK~ 241 (264)
||+||++++++.+..||.+|.+|+++|+++|+.+|||||++|+.++|++|+..+|++. .++......|+|+||++||.
T Consensus 1 FG~~L~~~~~~~~~~iP~iv~~ci~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lLK~ 80 (194)
T cd04372 1 YGCDLTTLVKAHNTQRPMVVDMCIREIEARGLQSEGLYRVSGFAEEIEDVKMAFDRDGEKADISATVYPDINVITGALKL 80 (194)
T ss_pred CCCChHHHHHHcCCCCChHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHcCCCCccCCcccccccHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999853 23322212399999999999
Q ss_pred HHhcCCCCCCChHhHHHHHHhhC
Q psy16474 242 YLRELPEPLLTYALYEDWLAAAR 264 (264)
Q Consensus 242 yLReLPePLit~~ly~~~i~a~k 264 (264)
|||+||+||+|+++|+.|+++++
T Consensus 81 flReLP~pLi~~~~~~~~~~~~~ 103 (194)
T cd04372 81 YFRDLPIPVITYDTYPKFIDAAK 103 (194)
T ss_pred HHHhCCCccCCHHHHHHHHHHHh
Confidence 99999999999999999998753
No 6
>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains. Most members that are studied show GAP activity towards Rac1, some additionally show activity towards Cdc42. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.93 E-value=1.5e-25 Score=192.78 Aligned_cols=101 Identities=34% Similarity=0.629 Sum_probs=92.2
Q ss_pred CCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccC-CCCCcCCCCHHHHHHHHHHH
Q psy16474 164 FCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCI-KFEDALEYDAHVLAGVLKLY 242 (264)
Q Consensus 164 FG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~-~~~~~~~~D~h~vaslLK~y 242 (264)
||+||+++++++|..||.+|.+|+++|+.+|+++|||||++|+.+.+++|+..+|.+.. ++......|+|++|++||.|
T Consensus 1 FGv~L~~~~~~~~~~iP~~l~~~i~~l~~~gl~~eGIFR~sg~~~~v~~l~~~~d~~~~~~~~~~~~~d~h~va~lLK~f 80 (187)
T cd04403 1 FGCHLEALCQRENSTVPKFVRLCIEAVEKRGLDVDGIYRVSGNLAVIQKLRFAVDHDEKLDLDDSKWEDIHVITGALKLF 80 (187)
T ss_pred CCCChHHHHHHcCCCCChHHHHHHHHHHHhCCCcCceeeecCcHHHHHHHHHHhcCCCCCCccccccccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999753 33333345999999999999
Q ss_pred HhcCCCCCCChHhHHHHHHhhC
Q psy16474 243 LRELPEPLLTYALYEDWLAAAR 264 (264)
Q Consensus 243 LReLPePLit~~ly~~~i~a~k 264 (264)
||+||+||+|+++|+.|+++++
T Consensus 81 LReLPepLi~~~~~~~~~~~~~ 102 (187)
T cd04403 81 FRELPEPLFPYSLFNDFVAAIK 102 (187)
T ss_pred HhcCCCCcCCHHHHHHHHHHHH
Confidence 9999999999999999998753
No 7
>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA. CdGAP is recruited to focal adhesions via the interaction with the scaffold protein actopaxin (alpha-parvin). Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.93 E-value=1.5e-25 Score=194.01 Aligned_cols=101 Identities=36% Similarity=0.619 Sum_probs=91.4
Q ss_pred CCCCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccC-CCCCc-CCCCHHHHHHHH
Q psy16474 162 PMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCI-KFEDA-LEYDAHVLAGVL 239 (264)
Q Consensus 162 ~vFG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~-~~~~~-~~~D~h~vaslL 239 (264)
++||++|++++.+.|..||.+|.+|++||+.+|+ +|||||++|+.+++++|+..+|.|.. ++... ...|+|+||++|
T Consensus 1 ~vFG~~L~~~~~~~g~~iP~il~~~i~~l~~~g~-~EGIFR~sG~~~~i~~l~~~~d~~~~~~~~~~~~~~d~h~va~lL 79 (195)
T cd04384 1 RVFGCDLTEHLLNSGQDVPQVLKSCTEFIEKHGI-VDGIYRLSGIASNIQRLRHEFDSEQIPDLTKDVYIQDIHSVSSLC 79 (195)
T ss_pred CcCCccHHHHHHHcCCCCChHHHHHHHHHHHcCC-CcCeeeCCCCHHHHHHHHHHHcCCCCCCcccccccccHHHHHHHH
Confidence 5899999999999999999999999999999999 59999999999999999999999863 22221 235999999999
Q ss_pred HHHHhcCCCCCCChHhHHHHHHhh
Q psy16474 240 KLYLRELPEPLLTYALYEDWLAAA 263 (264)
Q Consensus 240 K~yLReLPePLit~~ly~~~i~a~ 263 (264)
|.|||+||+||+|+++|+.|+++.
T Consensus 80 K~flReLPePLi~~~~y~~~~~~~ 103 (195)
T cd04384 80 KLYFRELPNPLLTYQLYEKFSEAV 103 (195)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHH
Confidence 999999999999999999999875
No 8
>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1). GMIP plays important roles in neurite growth and axonal guidance, and interacts with Gem, a member of the RGK subfamily of the Ras small GTPase superfamily, through the N-terminal half of the protein. GMIP contains a C-terminal RhoGAP domain. GMIP inhibits RhoA function, but is inactive towards Rac1 and Cdc41. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases ge
Probab=99.93 E-value=1.5e-25 Score=195.14 Aligned_cols=99 Identities=29% Similarity=0.535 Sum_probs=92.0
Q ss_pred CCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHHHHHHHH
Q psy16474 164 FCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYL 243 (264)
Q Consensus 164 FG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vaslLK~yL 243 (264)
||+||+.++.+.+..||.+|.+|+++|+++|+.+|||||++|+.+++++|+..||.|... .+...+|+|+||++||.||
T Consensus 1 FG~~L~~~~~~~~~~vP~iv~~ci~~i~~~gl~~eGIfR~sG~~~~i~~l~~~~~~~~~~-~~~~~~~~h~va~~LK~fL 79 (203)
T cd04378 1 FGVDFSQVPRDFPDEVPFIIKKCTSEIENRALGVQGIYRVSGSKARVEKLCQAFENGKDL-VELSELSPHDISSVLKLFL 79 (203)
T ss_pred CCCChHHHHHHCCCCCChHHHHHHHHHHhcCCCCccceeCCCcHHHHHHHHHHHhcCCCc-cccccCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998532 2344679999999999999
Q ss_pred hcCCCCCCChHhHHHHHHhh
Q psy16474 244 RELPEPLLTYALYEDWLAAA 263 (264)
Q Consensus 244 ReLPePLit~~ly~~~i~a~ 263 (264)
|+||+||+|+++|+.|++++
T Consensus 80 ReLpePlip~~~y~~~~~~~ 99 (203)
T cd04378 80 RQLPEPLILFRLYNDFIALA 99 (203)
T ss_pred HhCCCccCCHHHHHHHHHHH
Confidence 99999999999999999875
No 9
>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1). PARG1 was originally cloned as an interaction partner of PTPL1, an intracellular protein-tyrosine phosphatase. PARG1 interacts with Rap2, also a member of the Ras small GTPase superfamily whose exact function is unknown, and shows strong preference for Rho. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.93 E-value=1.6e-25 Score=196.17 Aligned_cols=99 Identities=30% Similarity=0.514 Sum_probs=91.8
Q ss_pred CCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHHHHHHHH
Q psy16474 164 FCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYL 243 (264)
Q Consensus 164 FG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vaslLK~yL 243 (264)
||+||++++.+.+..||.+|.+|+++|+++|+.+|||||++|+.+++++|+..||.|... .+...+|+|+||++||.||
T Consensus 1 FG~~L~~~~~~~~~~iP~il~~ci~~ie~~gl~~EGIfRvsG~~~~i~~l~~~~d~~~~~-~~~~~~~~h~va~~LK~fL 79 (211)
T cd04409 1 FGADFAQVAKKSPDGIPFIIKKCTSEIESRALCLKGIYRVNGAKSRVEKLCQAFENGKDL-VELSELSPHDISNVLKLYL 79 (211)
T ss_pred CCCChHHHHHhCCCCCCcHHHHHHHHHHHcCCCCCCeeECCCcHHHHHHHHHHHHcCCCc-cccccCCHHHHHHHHHHHH
Confidence 999999999999899999999999999999999999999999999999999999998632 2334679999999999999
Q ss_pred hcCCCCCCChHhHHHHHHhh
Q psy16474 244 RELPEPLLTYALYEDWLAAA 263 (264)
Q Consensus 244 ReLPePLit~~ly~~~i~a~ 263 (264)
|+||+||+|+++|+.|++++
T Consensus 80 ReLPePLi~~~~~~~~~~~~ 99 (211)
T cd04409 80 RQLPEPLILFRLYNEFIGLA 99 (211)
T ss_pred HhCCCcccCHHHHHHHHHHH
Confidence 99999999999999999875
No 10
>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin. RalBP1 plays an important role in endocytosis during interphase. During mitosis, RalBP1 transiently associates with the centromere and has been shown to play an essential role in the proper assembly of the mitotic apparatus. RalBP1 is an effector of the Ral GTPase which itself is an effector of Ras. RalBP1 contains a RhoGAP domain, which shows weak activity towards Rac1 and Cdc42, but not towards Ral, and a Ral effector domain binding motif. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low int
Probab=99.92 E-value=4.3e-25 Score=189.16 Aligned_cols=98 Identities=34% Similarity=0.512 Sum_probs=90.1
Q ss_pred CCCcHHHHHhhh----CCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHHHH
Q psy16474 164 FCQPLEEHLALI----GCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVL 239 (264)
Q Consensus 164 FG~~L~~~l~~~----~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vaslL 239 (264)
||+||+++++++ |..||.+|.+|++||+++|+++|||||++|+.+++++|+..+|+|.. .+...+|+|+||++|
T Consensus 1 FGv~L~~~~~~~~~~~g~~iP~~v~~~i~~l~~~gl~~EGIfR~~G~~~~i~~l~~~~~~~~~--~~~~~~d~h~va~lL 78 (182)
T cd04381 1 FGASLSLAVERSRCHDGIDLPLVFRECIDYVEKHGMKCEGIYKVSGIKSKVDELKAAYNRRES--PNLEEYEPPTVASLL 78 (182)
T ss_pred CCCCHHHHHHhhccCCCCcCChHHHHHHHHHHHhCCCCCceeecCCcHHHHHHHHHHHcCCCC--CCccccChHHHHHHH
Confidence 899999999875 56799999999999999999999999999999999999999999863 233467999999999
Q ss_pred HHHHhcCCCCCCChHhHHHHHHhh
Q psy16474 240 KLYLRELPEPLLTYALYEDWLAAA 263 (264)
Q Consensus 240 K~yLReLPePLit~~ly~~~i~a~ 263 (264)
|.|||+||+||+|+++|+.|++++
T Consensus 79 K~fLReLP~pLi~~~~~~~~~~~~ 102 (182)
T cd04381 79 KQYLRELPEPLLTKELMPRFEEAC 102 (182)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHc
Confidence 999999999999999999999875
No 11
>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=99.92 E-value=5.1e-25 Score=189.43 Aligned_cols=98 Identities=32% Similarity=0.526 Sum_probs=89.5
Q ss_pred CCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHHHHHHHH
Q psy16474 164 FCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYL 243 (264)
Q Consensus 164 FG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vaslLK~yL 243 (264)
||+||+.++. ++..||.+|.+|++||+++|+.+|||||++|+.+++++|++.+|.|.... +...+|+|+||++||.||
T Consensus 1 FGv~L~~~~~-~~~~vP~il~~~i~~l~~~gl~~EGIfR~~Gs~~~i~~l~~~~~~~~~~~-~~~~~d~h~va~lLK~fl 78 (186)
T cd04407 1 FGVRVGSLTS-NKTSVPIVLEKLLEHVEMHGLYTEGIYRKSGSANRMKELHQLLQADPENV-KLENYPIHAITGLLKQWL 78 (186)
T ss_pred CCCcHHHHHh-CCCCCCcHHHHHHHHHHHcCCCCCceeecCCCHHHHHHHHHHHhcCCccc-CcccCCHHHHHHHHHHHH
Confidence 9999999875 78899999999999999999999999999999999999999999875332 334679999999999999
Q ss_pred hcCCCCCCChHhHHHHHHhh
Q psy16474 244 RELPEPLLTYALYEDWLAAA 263 (264)
Q Consensus 244 ReLPePLit~~ly~~~i~a~ 263 (264)
|+||+||+|+++|+.|+.++
T Consensus 79 ReLPepLi~~~~~~~~~~~~ 98 (186)
T cd04407 79 RELPEPLMTFAQYNDFLRAV 98 (186)
T ss_pred HhCCCccCCHHHHHHHHHHH
Confidence 99999999999999999875
No 12
>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins. Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.92 E-value=5.4e-25 Score=192.27 Aligned_cols=100 Identities=36% Similarity=0.594 Sum_probs=88.9
Q ss_pred CCCcHHHHHhhh--CCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccC--CCCCcCCCCHHHHHHHH
Q psy16474 164 FCQPLEEHLALI--GCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCI--KFEDALEYDAHVLAGVL 239 (264)
Q Consensus 164 FG~~L~~~l~~~--~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~--~~~~~~~~D~h~vaslL 239 (264)
||+||+.++.++ +..||.+|++|++||+.+|+++|||||++|+.+++++|++.||++.. ++......|+|+||++|
T Consensus 1 FGvpL~~l~~re~~~~~IP~iv~~ci~~L~~~gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~l~~~~~~dvh~vA~lL 80 (207)
T cd04379 1 FGVPLSRLVEREGESRDVPIVLQKCVQEIERRGLDVIGLYRLCGSAAKKKELRDAFERNSAAVELSEELYPDINVITGVL 80 (207)
T ss_pred CCCChHHHHhhcCCCCCcChHHHHHHHHHHHcCCCcCCceeeCCcHHHHHHHHHHHcCCCCcCCCChhhcccHHHHHHHH
Confidence 999999999984 56799999999999999999999999999999999999999998743 22211123899999999
Q ss_pred HHHHhcCCCCCCChHhHHHHHHhh
Q psy16474 240 KLYLRELPEPLLTYALYEDWLAAA 263 (264)
Q Consensus 240 K~yLReLPePLit~~ly~~~i~a~ 263 (264)
|.|||+||+||+|+++|+.|++++
T Consensus 81 K~fLReLPePLip~~~y~~~~~~~ 104 (207)
T cd04379 81 KDYLRELPEPLITPQLYEMVLEAL 104 (207)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHH
Confidence 999999999999999999999875
No 13
>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA. Class IX myosins contain a characteristic head domain, a neck domain and a tail domain which contains a C6H2-zinc binding motif and a Rho-GAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolife
Probab=99.92 E-value=6.5e-25 Score=188.80 Aligned_cols=98 Identities=32% Similarity=0.569 Sum_probs=88.9
Q ss_pred CCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHHHHHHHH
Q psy16474 164 FCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYL 243 (264)
Q Consensus 164 FG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vaslLK~yL 243 (264)
||++|+.+.. .++.||.+|.+|++||+.+|+.+|||||++|+.++|++|++.+|.+... .+...+|+|+||++||.||
T Consensus 1 FGv~L~~l~~-~~~~iP~ii~~~i~~l~~~gl~~EGIFR~sGs~~~i~~l~~~~d~~~~~-~~~~~~d~h~va~lLK~fL 78 (186)
T cd04406 1 FGVELSRLTS-EDRSVPLVVEKLINYIEMHGLYTEGIYRKSGSTNKIKELRQGLDTDANS-VNLDDYNIHVIASVFKQWL 78 (186)
T ss_pred CCCchHHHHH-CCCCCCcHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHccCCCC-CCcccCCHHHHHHHHHHHH
Confidence 9999998865 5778999999999999999999999999999999999999999987532 2344679999999999999
Q ss_pred hcCCCCCCChHhHHHHHHhh
Q psy16474 244 RELPEPLLTYALYEDWLAAA 263 (264)
Q Consensus 244 ReLPePLit~~ly~~~i~a~ 263 (264)
|+||+||+|+++|+.|++++
T Consensus 79 ReLPePLi~~~~y~~~~~~~ 98 (186)
T cd04406 79 RDLPNPLMTFELYEEFLRAM 98 (186)
T ss_pred HhCCCccCCHHHHHHHHHHH
Confidence 99999999999999999875
No 14
>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins. Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.92 E-value=9.4e-25 Score=189.98 Aligned_cols=103 Identities=60% Similarity=0.984 Sum_probs=94.2
Q ss_pred CCCCCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCC-CcCCCCHHHHHHHH
Q psy16474 161 KPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFE-DALEYDAHVLAGVL 239 (264)
Q Consensus 161 ~~vFG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~-~~~~~D~h~vaslL 239 (264)
+++||+||++++..+|..||.+|.+|+.+|+++|+.+|||||++|+.+++++|+..+|.|..... .....|+|+||++|
T Consensus 2 ~~~FG~~L~~~~~~~~~~iP~~v~~~i~~L~~~gl~~eGIFR~~g~~~~i~~l~~~~d~g~~~~~~~~~~~d~h~va~~l 81 (203)
T cd04386 2 KPVFGTPLEEHLKRTGREIALPIEACVMCLLETGMNEEGLFRVGGGASKLKRLKAALDAGTFSLPLDEFYSDPHAVASAL 81 (203)
T ss_pred CCcCCCCHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCCcchhhccCCHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999864321 12235999999999
Q ss_pred HHHHhcCCCCCCChHhHHHHHHhh
Q psy16474 240 KLYLRELPEPLLTYALYEDWLAAA 263 (264)
Q Consensus 240 K~yLReLPePLit~~ly~~~i~a~ 263 (264)
|.|||+||+||+|+++|+.|++++
T Consensus 82 K~fLreLp~pli~~~~~~~~~~~~ 105 (203)
T cd04386 82 KSYLRELPDPLLTYNLYEDWVQAA 105 (203)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHH
Confidence 999999999999999999999875
No 15
>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins. Yeast Lrg1p is required for efficient cell fusion, and mother-daughter cell separation, possibly through acting as a RhoGAP specifically regulating 1,3-beta-glucan synthesis. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.92 E-value=8e-25 Score=191.89 Aligned_cols=101 Identities=35% Similarity=0.583 Sum_probs=91.3
Q ss_pred CCCcHHHHHhhhCC-----------CCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCH
Q psy16474 164 FCQPLEEHLALIGC-----------KIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDA 232 (264)
Q Consensus 164 FG~~L~~~l~~~~~-----------~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~ 232 (264)
||+||+.+++++|. .||.+|.+|+++|+++|+.+|||||++|+..++++|+..+|.+.....+....|+
T Consensus 1 FGv~L~~l~~~~~~~~~~~~~~~~~~IP~~l~~~i~~l~~~gl~~EGIFR~sG~~~~i~~l~~~~d~~~~~~~d~~~~~~ 80 (213)
T cd04397 1 FGVPLEILVEKFGADSTLGVGPGKLRIPALIDDIISAMRQMDMSVEGVFRKNGNIRRLKELTEEIDKNPTEVPDLSKENP 80 (213)
T ss_pred CCCCHHHHHHHhCcccccccCCCCCCCCHHHHHHHHHHHHcCCCcCCeeeecchHHHHHHHHHHHhcCCCcccccccCcH
Confidence 99999999999765 5999999999999999999999999999999999999999997543223345699
Q ss_pred HHHHHHHHHHHhcCCCCCCChHhHHHHHHhhC
Q psy16474 233 HVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264 (264)
Q Consensus 233 h~vaslLK~yLReLPePLit~~ly~~~i~a~k 264 (264)
|+||++||.|||+||+||+|+++|+.|+++++
T Consensus 81 ~~va~lLK~flReLPepLi~~~~y~~~i~~~~ 112 (213)
T cd04397 81 VQLAALLKKFLRELPDPLLTFKLYRLWISSQK 112 (213)
T ss_pred HHHHHHHHHHHHhCCCccCCHHHHHHHHHHHc
Confidence 99999999999999999999999999998753
No 16
>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain. ARHGAP25 (KIA0053) has been identified as a GAP for Rac1 and Cdc42. Short isoforms (without the PH domain) of ARHGAP24, called RC-GAP72 and p73RhoGAP, and of ARHGAP22, called p68RacGAP, has been shown to be involved in angiogenesis and endothelial cell capillary formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the r
Probab=99.92 E-value=1.4e-24 Score=188.24 Aligned_cols=101 Identities=42% Similarity=0.655 Sum_probs=89.9
Q ss_pred CCCCCcHHHHHhhhC----CCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHH
Q psy16474 162 PMFCQPLEEHLALIG----CKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAG 237 (264)
Q Consensus 162 ~vFG~~L~~~l~~~~----~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vas 237 (264)
++||+||++++..++ ..||.+|.+|++||+++|+++|||||++|+.+++++|++.+|.|.....+ ..+|+|+||+
T Consensus 1 ~iFG~~L~~~~~~~~~~~~~~iP~~i~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~d~~~~~~~~-~~~d~h~va~ 79 (199)
T cd04390 1 GVFGQRLEDTVAYERKFGPRLVPILVEQCVDFIREHGLKEEGLFRLPGQANLVKQLQDAFDAGERPSFD-SDTDVHTVAS 79 (199)
T ss_pred CcCCccHHHHHHHhcccCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHhCCCCCCcc-ccCCHHHHHH
Confidence 589999999997652 45999999999999999999999999999999999999999998642111 2469999999
Q ss_pred HHHHHHhcCCCCCCChHhHHHHHHhh
Q psy16474 238 VLKLYLRELPEPLLTYALYEDWLAAA 263 (264)
Q Consensus 238 lLK~yLReLPePLit~~ly~~~i~a~ 263 (264)
+||.|||+||+||+|+++|+.|++++
T Consensus 80 lLK~fLReLPePLi~~~~y~~~~~~~ 105 (199)
T cd04390 80 LLKLYLRELPEPVIPWAQYEDFLSCA 105 (199)
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHH
Confidence 99999999999999999999999764
No 17
>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins. p190, also named RhoGAP5, plays a role in neuritogenesis and axon branch stability. p190 shows a preference for Rho, over Rac and Cdc42, and consists of an N-terminal GTPase domain and a C-terminal GAP domain. The central portion of p190 contains important regulatory phosphorylation sites. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.91 E-value=3.1e-24 Score=184.38 Aligned_cols=98 Identities=27% Similarity=0.547 Sum_probs=89.5
Q ss_pred CCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccC-CCCCcCCCCHHHHHHHHHHH
Q psy16474 164 FCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCI-KFEDALEYDAHVLAGVLKLY 242 (264)
Q Consensus 164 FG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~-~~~~~~~~D~h~vaslLK~y 242 (264)
||+||++++. .+..||.+|.+|++||+++|+++|||||++|+..++++|++.+|++.. ++. ..++|+|+||++||.|
T Consensus 1 FG~pL~~~~~-~~~~IP~~l~~~i~~l~~~gl~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~-~~~~~~~~va~~lK~f 78 (185)
T cd04373 1 FGVPLANVVT-SEKPIPIFLEKCVEFIEATGLETEGIYRVSGNKTHLDSLQKQFDQDHNLDLV-SKDFTVNAVAGALKSF 78 (185)
T ss_pred CCCchHHHHh-CCCCCCcHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHhcCCCCCcc-cccCcHHHHHHHHHHH
Confidence 9999999988 688999999999999999999999999999999999999999999752 322 2356999999999999
Q ss_pred HhcCCCCCCChHhHHHHHHhh
Q psy16474 243 LRELPEPLLTYALYEDWLAAA 263 (264)
Q Consensus 243 LReLPePLit~~ly~~~i~a~ 263 (264)
||+||+||+|+++|+.|++++
T Consensus 79 LreLPePlip~~~~~~~~~~~ 99 (185)
T cd04373 79 FSELPDPLIPYSMHLELVEAA 99 (185)
T ss_pred HhcCCchhccHHHHHHHHHHH
Confidence 999999999999999999875
No 18
>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins. The function of ArhGAP18 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.91 E-value=3.9e-24 Score=187.88 Aligned_cols=101 Identities=31% Similarity=0.446 Sum_probs=89.8
Q ss_pred CCCCcHHHHHhhh-----CCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCC-CCCcCCCCHHHHH
Q psy16474 163 MFCQPLEEHLALI-----GCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIK-FEDALEYDAHVLA 236 (264)
Q Consensus 163 vFG~~L~~~l~~~-----~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~-~~~~~~~D~h~va 236 (264)
|||+||++++.++ +..||.+|.+|+++|+++|+.+|||||++|+.++|++|+..+|.+... ..+....|+|+||
T Consensus 1 vFGv~L~~l~~~~~~~~~~~~iP~~l~~~i~~l~~~gl~~EGIFR~~G~~~~i~~l~~~ld~~~~~~~~~~~~~~~h~va 80 (216)
T cd04391 1 LFGVPLSTLLERDQKKVPGSKVPLIFQKLINKLEERGLETEGILRIPGSAQRVKFLCQELEAKFYEGTFLWDQVKQHDAA 80 (216)
T ss_pred CCCCCHHHHHHHhcccCCCCCCCcHHHHHHHHHHHcCCCcCceeecCCcHHHHHHHHHHHhcccccCccccccCCHHHHH
Confidence 7999999999875 467999999999999999999999999999999999999999986321 1223356999999
Q ss_pred HHHHHHHhcCCCCCCChHhHHHHHHhh
Q psy16474 237 GVLKLYLRELPEPLLTYALYEDWLAAA 263 (264)
Q Consensus 237 slLK~yLReLPePLit~~ly~~~i~a~ 263 (264)
++||.|||+||+||+|+++|+.|+++.
T Consensus 81 ~lLK~flReLPePLi~~~~~~~~~~~~ 107 (216)
T cd04391 81 SLLKLFIRELPQPLLTVEYLPAFYSVQ 107 (216)
T ss_pred HHHHHHHHhCCCccCCHHHHHHHHHHH
Confidence 999999999999999999999999864
No 19
>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins. Both proteins are GTPase activating proteins of Rho1, but differ functionally in vivo: SAC7, but not BAG7, is involved in the control of Rho1-mediated activation of the PKC-MPK1 pathway. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.91 E-value=5.8e-24 Score=187.97 Aligned_cols=101 Identities=32% Similarity=0.474 Sum_probs=88.8
Q ss_pred CCCCcHHHHHhhhC---------------CCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccC--CCC
Q psy16474 163 MFCQPLEEHLALIG---------------CKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCI--KFE 225 (264)
Q Consensus 163 vFG~~L~~~l~~~~---------------~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~--~~~ 225 (264)
|||++|+++++..+ ..||.+|.+|++||+++|+++|||||++|+..++++|++.||.+.. ...
T Consensus 1 ~fg~~l~~~~~~~~~~~~~~~~~~~~~~~~~IP~iv~~ci~~l~~~gl~~EGIFRvsG~~~~i~~L~~~~d~~~~~~~~~ 80 (225)
T cd04396 1 VFGVSLEESLKYASVAISIVDEDGEQYVYGYIPVVVAKCGVYLKENATEVEGIFRVAGSSKRIRELQLIFSTPPDYGKSF 80 (225)
T ss_pred CCCCcHHHHHHhcchheeeecCCCccccCCCCChHHHHHHHHHHHCCCCCCCceeCCCCHHHHHHHHHHHccCcccCCcC
Confidence 79999999988654 3589999999999999999999999999999999999999998631 111
Q ss_pred CcCCCCHHHHHHHHHHHHhcCCCCCCChHhHHHHHHhh
Q psy16474 226 DALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAA 263 (264)
Q Consensus 226 ~~~~~D~h~vaslLK~yLReLPePLit~~ly~~~i~a~ 263 (264)
+...+|+|+||++||.|||+||+||+|+++|+.|++++
T Consensus 81 ~~~~~~vh~va~lLK~fLReLPePLip~~~~~~~~~~~ 118 (225)
T cd04396 81 DWDGYTVHDAASVLRRYLNNLPEPLVPLDLYEEFRNPL 118 (225)
T ss_pred CccCCCHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHH
Confidence 23467999999999999999999999999999998753
No 20
>KOG1451|consensus
Probab=99.90 E-value=1.3e-24 Score=208.16 Aligned_cols=157 Identities=27% Similarity=0.408 Sum_probs=130.5
Q ss_pred ccc-chHHHHHHHhhhh--hhcC--CccCCCcceeeecccCHHHHHHHHHHHHhhhhchhhhhhhhhcCCCCCCCCCcHH
Q psy16474 95 KIA-FPIELCTRALCQV--RRLG--NFVQDSYTTITLCHASRDVIKQHEEALLHLNETLPQLNSLILVNPMKPMFCQPLE 169 (264)
Q Consensus 95 ~I~-~~~~~C~~rl~~~--~r~~--~~~~~~~~~~t~~~~s~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~vFG~~L~ 169 (264)
+.+ +..++|+||-.++ +|+| +++.++++++|+||+|++++..|+++|++.++.+..- ..-...| +
T Consensus 312 ~~~~~~lKsC~RRktdSIdKRFCFDve~~erpgviTmQALSE~drrlWmeAMDG~ep~Y~s~-------~~~~~~~---~ 381 (812)
T KOG1451|consen 312 QTATFKLKSCSRRKTDSIDKRFCFDVEVEERPGVITMQALSEKDRRLWMEAMDGAEPSYTSG-------ENCSTYK---Q 381 (812)
T ss_pred CcceEEehhhccCcccccccceeeeeeecccCCeeehHhhhhhHHHHHHHHhcCCCccccCc-------cccchhh---h
Confidence 444 9999999999998 9999 8889999999999999999999999999998765321 1111112 2
Q ss_pred HHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHH-Hhhc---cCCCCCcCCCCHHHHHHHHHHHHhc
Q psy16474 170 EHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTC-LDAH---CIKFEDALEYDAHVLAGVLKLYLRE 245 (264)
Q Consensus 170 ~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~-ld~~---~~~~~~~~~~D~h~vaslLK~yLRe 245 (264)
..++..|..+ |++||+.|+..|+.++|+||..|.+++|++|... ||.. +.+......||+.+|+|.||.|||.
T Consensus 382 ~qLd~iGF~f---vrkCI~i~Et~GI~eqGlYR~vGvns~VQKlln~~fDPK~ase~d~dn~~eWeiKTITSaLKtYLRn 458 (812)
T KOG1451|consen 382 TQLDDIGFEF---VRKCIDILETSGIHEQGLYRNVGVNSKVQKLLNLGFDPKKASEKDGDNLDEWEIKTITSALKTYLRN 458 (812)
T ss_pred hhhhhhhHHH---HHHHHHHHHhcCcccccchhhccchHHHHHHHHhcCCCCCccccccchhhhhhhhhHHHHHHHHHHh
Confidence 2344456654 9999999999999999999999999999999774 4653 3455555679999999999999999
Q ss_pred CCCCCCChHhHHHHHHhhC
Q psy16474 246 LPEPLLTYALYEDWLAAAR 264 (264)
Q Consensus 246 LPePLit~~ly~~~i~a~k 264 (264)
|||||||+++++.||.|||
T Consensus 459 LpEPLMTY~LHk~FI~AAK 477 (812)
T KOG1451|consen 459 LPEPLMTYELHKVFINAAK 477 (812)
T ss_pred CCchhhHHHHHHHHHHHHh
Confidence 9999999999999999987
No 21
>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins. Yeast Rgd1 is a GAP protein for Rho3 and Rho4 and plays a role in low-pH response. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.90 E-value=1.5e-23 Score=180.56 Aligned_cols=101 Identities=37% Similarity=0.647 Sum_probs=91.4
Q ss_pred CCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCC----CcCCCCHHHHHHHH
Q psy16474 164 FCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFE----DALEYDAHVLAGVL 239 (264)
Q Consensus 164 FG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~----~~~~~D~h~vaslL 239 (264)
||++|++++.++|..||.+|.+|+++|+.+|+++|||||++|+..++++++..+|++..... +....|+|+||++|
T Consensus 1 FG~~L~~~~~~~~~~iP~~v~~~i~~l~~~gl~~eGiFR~~g~~~~i~~l~~~~d~~~~~~~~~~~~~~~~d~~~va~~L 80 (192)
T cd04398 1 FGVPLEDLILREGDNVPNIVYQCIQAIENFGLNLEGIYRLSGNVSRVNKLKELFDKDPLNVLLISPEDYESDIHSVASLL 80 (192)
T ss_pred CCCChHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCCeeecCCcHHHHHHHHHHHccCCccccccccccccccHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999853221 11245999999999
Q ss_pred HHHHhcCCCCCCChHhHHHHHHhhC
Q psy16474 240 KLYLRELPEPLLTYALYEDWLAAAR 264 (264)
Q Consensus 240 K~yLReLPePLit~~ly~~~i~a~k 264 (264)
|.|||+||+||+|+++|+.|+++++
T Consensus 81 K~fLreLp~pLi~~~~~~~~~~~~~ 105 (192)
T cd04398 81 KLFFRELPEPLLTKALSREFIEAAK 105 (192)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHHh
Confidence 9999999999999999999998753
No 22
>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins. ArhGAP20, also known as KIAA1391 and RA-RhoGAP, contains a RhoGAP, a RA, and a PH domain, and ANXL repeats. ArhGAP20 is activated by Rap1 and induces inactivation of Rho, which in turn leads to neurite outgrowth. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.90 E-value=1.7e-23 Score=180.59 Aligned_cols=97 Identities=35% Similarity=0.497 Sum_probs=89.9
Q ss_pred CCCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHHHHHHH
Q psy16474 163 MFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLY 242 (264)
Q Consensus 163 vFG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vaslLK~y 242 (264)
+||+||+..++ +..||.+|.+|+++|+++|+.+|||||++|+.+++++++..+|.|... +...+|+|++|++||.|
T Consensus 1 ~FG~~L~~~~~--~~~vP~~i~~~i~~l~~~g~~~eGiFR~~g~~~~i~~l~~~~~~~~~~--~~~~~~~~~va~~lK~f 76 (192)
T cd04402 1 LFGQPLSNICE--DDNLPKPILDMLSLLYQKGPSTEGIFRRSANAKACKELKEKLNSGVEV--DLKAEPVLLLASVLKDF 76 (192)
T ss_pred CCCCcHHHHhC--CCCCCHHHHHHHHHHHHhCCCCCCeeeCCCcHHHHHHHHHHHhCCCCC--CCccCCHHHHHHHHHHH
Confidence 69999999998 788999999999999999999999999999999999999999998632 23467999999999999
Q ss_pred HhcCCCCCCChHhHHHHHHhh
Q psy16474 243 LRELPEPLLTYALYEDWLAAA 263 (264)
Q Consensus 243 LReLPePLit~~ly~~~i~a~ 263 (264)
||+||+||+|++.|+.|++++
T Consensus 77 lreLpepLi~~~~~~~~~~~~ 97 (192)
T cd04402 77 LRNIPGSLLSSDLYEEWMSAL 97 (192)
T ss_pred HHhCCCccCCHHHHHHHHHHH
Confidence 999999999999999999865
No 23
>KOG4270|consensus
Probab=99.90 E-value=4.6e-24 Score=207.91 Aligned_cols=150 Identities=35% Similarity=0.506 Sum_probs=119.9
Q ss_pred CCchhhHhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhchHHHHHhhhhhhh-hhhhhhccCCCCCcccccHHHHHhhhCC
Q psy16474 16 FDESEEEDTLATEMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLP-QLNSLILVNPMKPMFCQPLEEHLALIGC 94 (264)
Q Consensus 16 ~~~~~~~d~~~~~~~~~~~ke~~~~~~~~~~~~~~~~yh~~a~~~l~~~~~-~l~~~~~~~~~~~~~~~~l~~hl~~~g~ 94 (264)
+.-+.|+|+|.++||+|.++|.+|. +++.+++.|.+|||+|+...+.++| .+.+......
T Consensus 99 ~kie~~~d~~~~~~~~f~~~~~~~~-f~~~~~e~q~~~~rrals~~~~vfgv~~~s~Q~s~~------------------ 159 (577)
T KOG4270|consen 99 MKIEQPTDQRHADHVTFDRKEGEYL-FLGLPVEFQPDYHRRALSASETVFGVSTEAMQLSYD------------------ 159 (577)
T ss_pred CccccCcchhhhhhhhhhhhcchhh-hccchhhhccccccccccchhhhhcchHHhhhcccc------------------
Confidence 4568899999999999999999999 9999999999999999998888875 3322111110
Q ss_pred cccchHHHHHHHhhhhhhcCCccCCCcceeeecccCHHHHHHHHHHHHhhhhchhhhhhhhhcCCCCCCCCCcHHHHHhh
Q psy16474 95 KIAFPIELCTRALCQVRRLGNFVQDSYTTITLCHASRDVIKQHEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEHLAL 174 (264)
Q Consensus 95 ~I~~~~~~C~~rl~~~~r~~~~~~~~~~~~t~~~~s~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~vFG~~L~~~l~~ 174 (264)
.+.=| +|+..++..
T Consensus 160 -----------------------------------------------------------------~~~n~-vp~i~~l~~ 173 (577)
T KOG4270|consen 160 -----------------------------------------------------------------PRGNF-VPLILHLLQ 173 (577)
T ss_pred -----------------------------------------------------------------cCCCc-chhhhHhhh
Confidence 11111 344444443
Q ss_pred hCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHHHHHHHHhcCCCCCCChH
Q psy16474 175 IGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYA 254 (264)
Q Consensus 175 ~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vaslLK~yLReLPePLit~~ 254 (264)
.| ..+.+.|++.|||||++|..++++.||+++|+|.+.... ..|+|++|++||.||||||+|+||++
T Consensus 174 ~~-----------~l~~e~Gl~eEGlFRi~~~~sk~e~lr~~ld~g~v~~~~--~iDvH~~agllKayLRELPepvl~~n 240 (577)
T KOG4270|consen 174 SG-----------RLLLEGGLKEEGLFRINGEASKVERLREALDCGVVPDQL--YIDVHCLAGLLKAYLRELPEPVLTFN 240 (577)
T ss_pred hh-----------hhhhhcCccccceeccCCCchHHHHHHHHHcCCcccccc--cCCHHHHHHHHHHHHHhCCCcCCCcc
Confidence 33 344578999999999999999999999999999764332 45999999999999999999999999
Q ss_pred hHHHHHHhh
Q psy16474 255 LYEDWLAAA 263 (264)
Q Consensus 255 ly~~~i~a~ 263 (264)
+|++|++++
T Consensus 241 L~~e~~qv~ 249 (577)
T KOG4270|consen 241 LYKEWTQVQ 249 (577)
T ss_pred cCHHHHHHH
Confidence 999999764
No 24
>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.90 E-value=2.1e-23 Score=179.59 Aligned_cols=98 Identities=35% Similarity=0.513 Sum_probs=88.0
Q ss_pred CCCcHHHHHhhh-----CCCCcHHHHHHHHHHH-hcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHH
Q psy16474 164 FCQPLEEHLALI-----GCKIAFPIELCTRALC-QIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAG 237 (264)
Q Consensus 164 FG~~L~~~l~~~-----~~~iP~vv~~ci~~L~-~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vas 237 (264)
||+||++++.++ +..||.+|..|+++|. .+|+++|||||++|+.+++++++..+|.|..++ ....|+|+||+
T Consensus 1 FG~~L~~~~~r~~~~~~~~~iP~il~~~i~~l~~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~--~~~~d~h~va~ 78 (187)
T cd04389 1 FGSSLEEIMDRQKEKYPELKLPWILTFLSEKVLALGGFQTEGIFRVPGDIDEVNELKLRVDQWDYPL--SGLEDPHVPAS 78 (187)
T ss_pred CCCCHHHHHHHHHhhCCCCCCCchHHHHHHHHHHcCCCcCCCeeeCCCCHHHHHHHHHHHhcCCCCc--cccCCHHHHHH
Confidence 899999999775 3469999999999986 578999999999999999999999999987543 23459999999
Q ss_pred HHHHHHhcCCCCCCChHhHHHHHHhh
Q psy16474 238 VLKLYLRELPEPLLTYALYEDWLAAA 263 (264)
Q Consensus 238 lLK~yLReLPePLit~~ly~~~i~a~ 263 (264)
+||.|||+||+||+|+++|++|++++
T Consensus 79 lLK~fLReLpePli~~~~~~~~i~~~ 104 (187)
T cd04389 79 LLKLWLRELEEPLIPDALYQQCISAS 104 (187)
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHhh
Confidence 99999999999999999999999864
No 25
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins. ArhGAP21 is a multi-domain protein, containing RhoGAP, PH and PDZ domains, and is believed to play a role in the organization of the cell-cell junction complex. It has been shown to function as a GAP of Cdc42 and RhoA, and to interact with alpha-catenin and Arf6. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.89 E-value=3.4e-23 Score=179.23 Aligned_cols=101 Identities=28% Similarity=0.536 Sum_probs=90.2
Q ss_pred CCCCcHHHHHhhh-CCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCC--CCCcCCCCHHHHHHHH
Q psy16474 163 MFCQPLEEHLALI-GCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIK--FEDALEYDAHVLAGVL 239 (264)
Q Consensus 163 vFG~~L~~~l~~~-~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~--~~~~~~~D~h~vaslL 239 (264)
+||+||++++... +..||.+|+.|+.+|+.+|+++|||||++|+..++++|+..+|+|... ..+...+|+|++|++|
T Consensus 1 ~FGvpl~~~~~~~~~~~vP~iv~~~~~~l~~~g~~~eGIFR~~g~~~~i~~l~~~l~~~~~~~~~~~~~~~d~~~va~ll 80 (196)
T cd04395 1 TFGVPLDDCPPSSENPYVPLIVEVCCNIVEARGLETVGIYRVPGNNAAISALQEELNRGGFDIDLQDPRWRDVNVVSSLL 80 (196)
T ss_pred CCCccHHHHhcccCCCCCChHHHHHHHHHHHcCCCCccceeCCCcHHHHHHHHHHHhcCCCCcCccccccccHHHHHHHH
Confidence 5999999988764 477999999999999999999999999999999999999999998643 2223346999999999
Q ss_pred HHHHhcCCCCCCChHhHHHHHHhh
Q psy16474 240 KLYLRELPEPLLTYALYEDWLAAA 263 (264)
Q Consensus 240 K~yLReLPePLit~~ly~~~i~a~ 263 (264)
|.|||+||+||+|.++|++|++++
T Consensus 81 K~flr~Lp~pli~~~~~~~~i~~~ 104 (196)
T cd04395 81 KSFFRKLPEPLFTNELYPDFIEAN 104 (196)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHH
Confidence 999999999999999999999875
No 26
>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins. Class IX myosins contain a characteristic head domain, a neck domain, a tail domain which contains a C6H2-zinc binding motif and a RhoGAP domain. Class IX myosins are single-headed, processive myosins that are partly cytoplasmic, and partly associated with membranes and the actin cytoskeleton. Class IX myosins are implicated in the regulation of neuronal morphogenesis and function of sensory systems, like the inner ear. There are two major isoforms, myosin IXA and IXB with several splice variants, which are both expressed in developing neurons. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell prolifer
Probab=99.89 E-value=5.2e-23 Score=176.81 Aligned_cols=98 Identities=35% Similarity=0.569 Sum_probs=88.9
Q ss_pred CCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHHHHHHHH
Q psy16474 164 FCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYL 243 (264)
Q Consensus 164 FG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vaslLK~yL 243 (264)
||+||+.++. .+..||.+|..|++||+.+|+.+|||||++|+.++++++++.+|.+... .+...+|+|+||++||.||
T Consensus 1 FG~~L~~~~~-~~~~vP~~l~~~~~~l~~~g~~~eGiFR~~g~~~~i~~l~~~l~~~~~~-~~~~~~~~~~va~~LK~fl 78 (186)
T cd04377 1 FGVSLSSLTS-EDRSVPLVLEKLLEHIEMHGLYTEGIYRKSGSANKIKELRQGLDTDPDS-VNLEDYPIHVITSVLKQWL 78 (186)
T ss_pred CCCCHHHHHh-CCCCCChHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhCCCcc-cCcccCCHHHHHHHHHHHH
Confidence 9999998875 6788999999999999999999999999999999999999999998422 2344679999999999999
Q ss_pred hcCCCCCCChHhHHHHHHhh
Q psy16474 244 RELPEPLLTYALYEDWLAAA 263 (264)
Q Consensus 244 ReLPePLit~~ly~~~i~a~ 263 (264)
|+||+||+|+++|+.|++++
T Consensus 79 r~LpepLi~~~~~~~~~~~~ 98 (186)
T cd04377 79 RELPEPLMTFELYENFLRAM 98 (186)
T ss_pred HcCCCccCCHHHHHHHHHHH
Confidence 99999999999999999764
No 27
>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins. Bem3 is a GAP protein of Cdc42, and is specifically involved in the control of the initial assembly of the septin ring in yeast bud formation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.89 E-value=5e-23 Score=177.42 Aligned_cols=101 Identities=37% Similarity=0.568 Sum_probs=88.9
Q ss_pred CCCCcHHHHHhhh-----CCCCcHHHHHHHHHHHhcC-CCCCCcccccCCHHHHHHHHHHHhhcc-CCCCC-cCCCCHHH
Q psy16474 163 MFCQPLEEHLALI-----GCKIAFPIELCTRALCQIG-MDEEGLFRVTGGASKVKRLKTCLDAHC-IKFED-ALEYDAHV 234 (264)
Q Consensus 163 vFG~~L~~~l~~~-----~~~iP~vv~~ci~~L~~~G-l~~eGIFR~~G~~~~v~~Lk~~ld~~~-~~~~~-~~~~D~h~ 234 (264)
|||+||+++++.+ +..||.+|.+|++||+++| +.+|||||++|+.+.+++|++.+|.+. +++.. ...+|+|+
T Consensus 1 vFGv~L~~~~~~~~~~~~~~~iP~iv~~~i~~l~~~g~~~~eGIFR~~G~~~~i~~l~~~~~~~~~~~~~~~~~~~d~h~ 80 (190)
T cd04400 1 IFGSPLEEAVELSSHKYNGRDLPSVVYRCIEYLDKNRAIYEEGIFRLSGSASVIKQLKERFNTEYDVDLFSSSLYPDVHT 80 (190)
T ss_pred CCCCcHHHHHHHhccccCCCCCChHHHHHHHHHHHcCCcCCCCeeeCCCcHHHHHHHHHHHcCCCCCCccccccccCHHH
Confidence 7999999999874 4579999999999999987 899999999999999999999999974 23221 23469999
Q ss_pred HHHHHHHHHhcCCCCCCChHhHHHHHHhh
Q psy16474 235 LAGVLKLYLRELPEPLLTYALYEDWLAAA 263 (264)
Q Consensus 235 vaslLK~yLReLPePLit~~ly~~~i~a~ 263 (264)
||++||.|||+||+||+|+++|+.|++++
T Consensus 81 va~lLK~flreLP~PLi~~~~~~~~~~~~ 109 (190)
T cd04400 81 VAGLLKLYLRELPTLILGGELHNDFKRLV 109 (190)
T ss_pred HHHHHHHHHHhCCcccCCHHHHHHHHHHH
Confidence 99999999999999999999999998764
No 28
>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins. The function of FAM13A1a is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by up several orders of magnitude.
Probab=99.89 E-value=5.4e-23 Score=177.05 Aligned_cols=101 Identities=31% Similarity=0.386 Sum_probs=89.9
Q ss_pred CCCCCcHHHHHhhh--CCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHHHH
Q psy16474 162 PMFCQPLEEHLALI--GCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVL 239 (264)
Q Consensus 162 ~vFG~~L~~~l~~~--~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vaslL 239 (264)
++||+||+++.++. +..||.+|..|++||+++|+++|||||++|+..++++++..+|.|... .....+|+|++|++|
T Consensus 1 ~~FGv~L~~l~~~~~~~~~vP~il~~~i~~l~~~gl~~eGIFR~~g~~~~i~~l~~~~d~~~~~-~~~~~~d~~~va~~l 79 (189)
T cd04393 1 KVFGVPLQELQQAGQPENGVPAVVRHIVEYLEQHGLEQEGLFRVNGNAETVEWLRQRLDSGEEV-DLSKEADVCSAASLL 79 (189)
T ss_pred CcccccHHHHHhccCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCCHHHHHHHHHHHcCCCCC-CccccCCHHHHHHHH
Confidence 58999999998763 557999999999999999999999999999999999999999998632 111247999999999
Q ss_pred HHHHhcCCCCCCChHhHHHHHHhh
Q psy16474 240 KLYLRELPEPLLTYALYEDWLAAA 263 (264)
Q Consensus 240 K~yLReLPePLit~~ly~~~i~a~ 263 (264)
|.|||+||+||+|+++|+.|+++.
T Consensus 80 K~flr~Lp~pLi~~~~~~~l~~~~ 103 (189)
T cd04393 80 RLFLQELPEGLIPASLQIRLMQLY 103 (189)
T ss_pred HHHHHhCCCccCCHHHHHHHHHHH
Confidence 999999999999999999998764
No 29
>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins. The mouse homolog of human ArhGAP11A has been detected as a gene exclusively expressed in immature ganglion cells, potentially playing a role in retinal development. The exact function of ArhGAP11A is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.89 E-value=7.5e-23 Score=178.09 Aligned_cols=97 Identities=32% Similarity=0.383 Sum_probs=87.2
Q ss_pred CCCCcHHHHHhh---hCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHHHH
Q psy16474 163 MFCQPLEEHLAL---IGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVL 239 (264)
Q Consensus 163 vFG~~L~~~l~~---~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vaslL 239 (264)
|||+||+.++.. ++..||.+|.+|++||++ |+++|||||++|+.+++++|+..+|+|.... ..+++|+||++|
T Consensus 1 vFGv~L~~l~~~~~~~~~~IP~il~~~~~~l~~-~l~~EGIFR~sG~~~~i~~l~~~~d~~~~~~---~~~~~~~vaslL 76 (202)
T cd04394 1 VFGVPLHSLPHSTVPEYGNVPKFLVDACTFLLD-HLSTEGLFRKSGSVVRQKELKAKLEGGEACL---SSALPCDVAGLL 76 (202)
T ss_pred CCCccHHHHHHhhCCCCCCCChHHHHHHHHHHH-CCCCCCeeeCCCCHHHHHHHHHHHcCCCCCc---cccCHHHHHHHH
Confidence 799999998764 367899999999999986 6999999999999999999999999986422 246899999999
Q ss_pred HHHHhcCCCCCCChHhHHHHHHhh
Q psy16474 240 KLYLRELPEPLLTYALYEDWLAAA 263 (264)
Q Consensus 240 K~yLReLPePLit~~ly~~~i~a~ 263 (264)
|.|||+||+||+|+++|+.|+++.
T Consensus 77 K~flReLPePLi~~~~~~~~~~~~ 100 (202)
T cd04394 77 KQFFRELPEPLLPYDLHEALLKAQ 100 (202)
T ss_pred HHHHhcCCCcCCCHHHHHHHHHHH
Confidence 999999999999999999999875
No 30
>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins. Yeast Rgd2 is a GAP protein for Cdc42 and Rho5. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.88 E-value=9.7e-23 Score=178.69 Aligned_cols=99 Identities=21% Similarity=0.255 Sum_probs=87.2
Q ss_pred CCCcHHHHHhhhCCCCcHHHHHHHHHHHhcC--CCCC----CcccccCCHHHHHHHHHHHhhccCC-CCC--cCCCCHHH
Q psy16474 164 FCQPLEEHLALIGCKIAFPIELCTRALCQIG--MDEE----GLFRVTGGASKVKRLKTCLDAHCIK-FED--ALEYDAHV 234 (264)
Q Consensus 164 FG~~L~~~l~~~~~~iP~vv~~ci~~L~~~G--l~~e----GIFR~~G~~~~v~~Lk~~ld~~~~~-~~~--~~~~D~h~ 234 (264)
||+||+.++..++..||.+|.+|++||+.+| +..+ ||||++|+.+.+++||+++|.|... ... ...+|+|+
T Consensus 1 FGv~L~~~~~~~~~~VP~vV~~ci~~ie~~~~~l~~~~~~~Gi~r~sg~~~~i~~Lr~~~d~~~~~~~~~~~~~~~dv~~ 80 (212)
T cd04399 1 FGVDLETRCRLDKKVVPLIVSAILSYLDQLYPDLINDEVRRNVWTDPVSLKETHQLRNLLNKPKKPDKEVIILKKFEPST 80 (212)
T ss_pred CCCcHHHHHhhcCCCCCHHHHHHHHHHHHhCccccCCcceeeEEEecCcHHHHHHHHHHHcCCCCcchhhhccccCCHHH
Confidence 9999999999999999999999999999865 4333 9999999999999999999998532 211 34579999
Q ss_pred HHHHHHHHHhcCCCCCCChHhHHHHHHh
Q psy16474 235 LAGVLKLYLRELPEPLLTYALYEDWLAA 262 (264)
Q Consensus 235 vaslLK~yLReLPePLit~~ly~~~i~a 262 (264)
||++||+||||||+||+|+++|+.|+++
T Consensus 81 va~~LK~ylReLPepL~~~~~y~~~~~~ 108 (212)
T cd04399 81 VASVLKLYLLELPDSLIPHDIYDLIRSL 108 (212)
T ss_pred HHHHHHHHHHHCCCccCCHHHHHHHHHH
Confidence 9999999999999999999999999865
No 31
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.88 E-value=2.8e-22 Score=173.29 Aligned_cols=102 Identities=29% Similarity=0.361 Sum_probs=90.8
Q ss_pred CCCCCCCcHHHHHhhhC--CCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCC-CHHHHH
Q psy16474 160 MKPMFCQPLEEHLALIG--CKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEY-DAHVLA 236 (264)
Q Consensus 160 ~~~vFG~~L~~~l~~~~--~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~-D~h~va 236 (264)
+..+||+||+.++.+.+ ..||.+|..|+++|+++|+++|||||++|+..+++++++.+|.|... +...+ |+|++|
T Consensus 2 ~~~~FGv~L~~~~~~~~~~~~iP~il~~~i~~l~~~g~~~eGIFR~~g~~~~i~~l~~~~~~~~~~--~~~~~~d~~~va 79 (195)
T cd04404 2 PTQQFGVSLQFLKEKNPEQEPIPPVVRETVEYLQAHALTTEGIFRRSANTQVVKEVQQKYNMGEPV--DFDQYEDVHLPA 79 (195)
T ss_pred CCCcCCCcHHHHHHhCCCCCCCChHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCCCCC--CcccccCHHHHH
Confidence 35799999999988754 67999999999999999999999999999999999999999998521 22234 999999
Q ss_pred HHHHHHHhcCCCCCCChHhHHHHHHhh
Q psy16474 237 GVLKLYLRELPEPLLTYALYEDWLAAA 263 (264)
Q Consensus 237 slLK~yLReLPePLit~~ly~~~i~a~ 263 (264)
++||.|||+||+||+|.++|+.|+++.
T Consensus 80 ~~LK~~lr~Lp~pLi~~~~~~~l~~~~ 106 (195)
T cd04404 80 VILKTFLRELPEPLLTFDLYDDIVGFL 106 (195)
T ss_pred HHHHHHHHhCCCccCCHHHHHHHHHHH
Confidence 999999999999999999999998753
No 32
>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs. ARAPs (also known as centaurin deltas) contain, besides the RhoGAP domain, an Arf GAP, ankyrin repeat ras-associating, and PH domains. Since their ArfGAP activity is PIP3-dependent, ARAPs are considered integration points for phosphoinositide, Arf and Rho signaling. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.88 E-value=3.3e-22 Score=171.58 Aligned_cols=98 Identities=35% Similarity=0.589 Sum_probs=86.4
Q ss_pred CCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCC-CcCCCCHHHHHHHHHHHH
Q psy16474 165 CQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFE-DALEYDAHVLAGVLKLYL 243 (264)
Q Consensus 165 G~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~-~~~~~D~h~vaslLK~yL 243 (264)
|.+|+.. +.++..||.+|.+|++||+++|+.+|||||++|+.+++++|+..++.+..... ....+|+|+||++||.||
T Consensus 2 ~~~l~~~-~~~~~~iP~~v~~~i~~l~~~g~~~eGIFR~sg~~~~i~~L~~~~~~~~~~~~~~~~~~d~~~va~llK~yL 80 (184)
T cd04385 2 GPALEDQ-QLTDNDIPVIVDKCIDFITQHGLMSEGIYRKNGKNSSVKKLLEAFRKDARSVQLREGEYTVHDVADVLKRFL 80 (184)
T ss_pred CccHHHh-hhCCCCCChHHHHHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHHhcCCCcCCCCcccCCHHHHHHHHHHHH
Confidence 7778766 44778999999999999999999999999999999999999999988643322 234579999999999999
Q ss_pred hcCCCCCCChHhHHHHHHhh
Q psy16474 244 RELPEPLLTYALYEDWLAAA 263 (264)
Q Consensus 244 ReLPePLit~~ly~~~i~a~ 263 (264)
|+||+||||+++|+.|++++
T Consensus 81 reLP~pLi~~~~~~~~~~~~ 100 (184)
T cd04385 81 RDLPDPLLTSELHAEWIEAA 100 (184)
T ss_pred HhCCCccCCHHHHHHHHHHH
Confidence 99999999999999999875
No 33
>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins. MgcRacGAP plays an important dual role in cytokinesis: i) it is part of centralspindlin-complex, together with the mitotic kinesin MKLP1, which is critical for the structure of the central spindle by promoting microtuble bundling. ii) after phosphorylation by aurora B MgcRacGAP becomes an effective regulator of RhoA and plays an important role in the assembly of the contractile ring and the initiation of cytokinesis. MgcRacGAP-like proteins contain a N-terminal C1-like domain, and a C-terminal RhoGAP domain. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway
Probab=99.87 E-value=2e-22 Score=174.33 Aligned_cols=95 Identities=34% Similarity=0.513 Sum_probs=82.8
Q ss_pred HHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHHHHHHHHhcCCC
Q psy16474 169 EEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPE 248 (264)
Q Consensus 169 ~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vaslLK~yLReLPe 248 (264)
.+.-..++..||.+|.+|+++|+++|+.+|||||++|+.++|++|++.+|.|... .+...+|+|+||++||.|||+||+
T Consensus 7 ~~~~~~~~~~IP~~l~~ci~~ie~~gl~~EGIFRv~G~~~~i~~l~~~~~~~~~~-~~~~~~d~h~vaslLK~fLReLPe 85 (193)
T cd04382 7 ADFDPSTSPMIPALIVHCVNEIEARGLTEEGLYRVSGSEREVKALKEKFLRGKTV-PNLSKVDIHVICGCLKDFLRSLKE 85 (193)
T ss_pred cccCCCCCCCccHHHHHHHHHHHHcCCCCCCeeecCCcHHHHHHHHHHHHcCCCC-cccccCCHHHHHHHHHHHHHhCCC
Confidence 3333456788999999999999999999999999999999999999999987531 223346999999999999999999
Q ss_pred CCCChHhHHHHHHhhC
Q psy16474 249 PLLTYALYEDWLAAAR 264 (264)
Q Consensus 249 PLit~~ly~~~i~a~k 264 (264)
||+|+++|+.|+++++
T Consensus 86 PLi~~~~y~~~~~~~~ 101 (193)
T cd04382 86 PLITFALWKEFMEAAE 101 (193)
T ss_pred cCCCHHHHHHHHHHHH
Confidence 9999999999998763
No 34
>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase). This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell p
Probab=99.87 E-value=4.3e-22 Score=172.91 Aligned_cols=94 Identities=24% Similarity=0.413 Sum_probs=80.0
Q ss_pred cHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHHHHHHHHhcC
Q psy16474 167 PLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLREL 246 (264)
Q Consensus 167 ~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vaslLK~yLReL 246 (264)
+|.+.+. ....+|.+|.+|+++||++|+++|||||++|+.+ +.+|++.||.+.... +...+|+|+||++||.|||+|
T Consensus 4 ~~~~~~~-~~~~~P~iv~~ci~~IE~~GL~~eGIYRvsgs~~-~~~lk~~~d~~~~~~-d~~~~dv~~va~~LK~ylReL 80 (200)
T cd04388 4 DLTEQFS-PPDVAPPLLIKLVEAIEKKGLESSTLYRTQSSSS-LTELRQILDCDAASV-DLEQFDVAALADALKRYLLDL 80 (200)
T ss_pred cHHHHhC-CCCCCCHHHHHHHHHHHHhCCCCCceeeCCCccH-HHHHHHHHhcCCCCC-CcccccHHHHHHHHHHHHHhC
Confidence 3444443 3467999999999999999999999999999875 789999999864322 344679999999999999999
Q ss_pred CCCCCChHhHHHHHHhh
Q psy16474 247 PEPLLTYALYEDWLAAA 263 (264)
Q Consensus 247 PePLit~~ly~~~i~a~ 263 (264)
|+||||+++|++|++++
T Consensus 81 PePLip~~~y~~fi~~~ 97 (200)
T cd04388 81 PNPVIPAPVYSEMISRA 97 (200)
T ss_pred CCccCCHHHHHHHHHHH
Confidence 99999999999999986
No 35
>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins. ArhGAP6 shows GAP activity towards RhoA, but not towards Cdc42 and Rac1. ArhGAP6 is often deleted in microphthalmia with linear skin defects syndrome (MLS); MLS is a severe X-linked developmental disorder. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.86 E-value=1.5e-21 Score=170.43 Aligned_cols=88 Identities=27% Similarity=0.499 Sum_probs=79.4
Q ss_pred hCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHHHHHHHHhcCCCCCCChH
Q psy16474 175 IGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYA 254 (264)
Q Consensus 175 ~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vaslLK~yLReLPePLit~~ 254 (264)
.++.||.+|.+|++||+++|+++|||||++|+.+++++|+..+|.|.... ....+|+|+||++||.|||+||+||+|++
T Consensus 5 ~~~~iP~iv~~ci~~l~~~gl~~EGIFR~~G~~~~i~~l~~~~d~~~~~~-~~~~~~~h~va~lLK~fLReLPePLi~~~ 83 (206)
T cd04376 5 IARQVPRLVESCCQHLEKHGLQTVGIFRVGSSKKRVRQLREEFDRGIDVV-LDENHSVHDVAALLKEFFRDMPDPLLPRE 83 (206)
T ss_pred CCCCCCHHHHHHHHHHHHcCCCCCceeeCCCCHHHHHHHHHHHhcCCCCC-CcccCCHHHHHHHHHHHHHhCCCccCCHH
Confidence 35689999999999999999999999999999999999999999986321 12356999999999999999999999999
Q ss_pred hHHHHHHhh
Q psy16474 255 LYEDWLAAA 263 (264)
Q Consensus 255 ly~~~i~a~ 263 (264)
+|+.|++++
T Consensus 84 ~y~~~i~~~ 92 (206)
T cd04376 84 LYTAFIGTA 92 (206)
T ss_pred HHHHHHHHH
Confidence 999999875
No 36
>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins. OCRL1 (oculocerebrorenal syndrome of Lowe 1)-like proteins contain two conserved domains: a central inositol polyphosphate 5-phosphatase domain and a C-terminal Rho GAP domain, this GAP domain lacks the catalytic residue and therefore maybe inactive. OCRL-like proteins are type II inositol polyphosphate 5-phosphatases that can hydrolyze lipid PI(4,5)P2 and PI(3,4,5)P3 and soluble Ins(1,4,5)P3 and Ins(1,3,4,5)P4, but their individual specificities vary. The functionality of the RhoGAP domain is still unclear. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPas
Probab=99.84 E-value=9.4e-21 Score=166.92 Aligned_cols=101 Identities=30% Similarity=0.411 Sum_probs=89.7
Q ss_pred CCCCCCCcHHHHHhhh----------------------CCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHH----HHHH
Q psy16474 160 MKPMFCQPLEEHLALI----------------------GCKIAFPIELCTRALCQIGMDEEGLFRVTGGASK----VKRL 213 (264)
Q Consensus 160 ~~~vFG~~L~~~l~~~----------------------~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~----v~~L 213 (264)
.+++||.+|+++...+ ...||.+|.+|+++|+++|+.+|||||++|+.+. ++++
T Consensus 9 ~~s~fG~sl~~L~~~~~p~~~~~~~~~~~~~~~~~~~~~~~iP~~l~~~i~~L~~~gl~~eGiFR~~G~~~~~~~~i~~l 88 (220)
T cd04380 9 LPSCFGSSLETLIRLPDPGIRNLIDQLELGDNPDYSEVPLSIPKEIWRLVDYLYTRGLAQEGLFEEPGLPSEPGELLAEI 88 (220)
T ss_pred ecccccccHHHHhcCCchHhhccccccccccCCCCCCCccccCHHHHHHHHHHHHcCCcccCcccCCCcccchHHHHHHH
Confidence 4689999999987632 1359999999999999999999999999999999 9999
Q ss_pred HHHHhhccCCCCCcCCCCHHHHHHHHHHHHhcCCCCCCChHhHHHHHHhh
Q psy16474 214 KTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAA 263 (264)
Q Consensus 214 k~~ld~~~~~~~~~~~~D~h~vaslLK~yLReLPePLit~~ly~~~i~a~ 263 (264)
++.+|+|.... ...|+|++|++||.|||+|||||||+++|+.|++++
T Consensus 89 ~~~ld~~~~~~---~~~~~~~va~~LK~fLr~LpePlip~~~y~~~~~~~ 135 (220)
T cd04380 89 RDALDTGSPFN---SPGSAESVAEALLLFLESLPDPIIPYSLYERLLEAV 135 (220)
T ss_pred HHHHhCCCCCC---CCCCHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHh
Confidence 99999985322 357999999999999999999999999999999873
No 37
>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins. The function of ArhGAP19 is unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.84 E-value=7.1e-21 Score=166.44 Aligned_cols=91 Identities=37% Similarity=0.517 Sum_probs=77.4
Q ss_pred CCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccC-CCCCcCCCCHHHHHHHHHHH
Q psy16474 164 FCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCI-KFEDALEYDAHVLAGVLKLY 242 (264)
Q Consensus 164 FG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~-~~~~~~~~D~h~vaslLK~y 242 (264)
||-+|.+- |.. .|.+||+||++ |+++|||||++|+.+++++|++.+|+|.. ++ ....+|+|+||++||.|
T Consensus 1 ~~~~~~~~----~~~---~v~~~i~~l~~-gl~~EGIFR~sGs~~~i~~L~~~~d~~~~~~~-~~~~~~~h~va~lLK~f 71 (208)
T cd04392 1 FGAPLTEE----GIA---QIYQLIEYLEK-NLRVEGLFRKPGNSARQQELRDLLNSGTDLDL-ESGGFHAHDCATVLKGF 71 (208)
T ss_pred CCCCcccc----ccH---HHHHHHHHHHh-CCCCcceeeCCCcHHHHHHHHHHHHcCCCCCc-ccccCCHHHHHHHHHHH
Confidence 67776643 222 58999999998 99999999999999999999999999853 33 22357999999999999
Q ss_pred HhcCCCCCCChHhHHHHHHhh
Q psy16474 243 LRELPEPLLTYALYEDWLAAA 263 (264)
Q Consensus 243 LReLPePLit~~ly~~~i~a~ 263 (264)
||+||+||+|+++|+.|++++
T Consensus 72 lReLPePLi~~~~y~~~~~i~ 92 (208)
T cd04392 72 LGELPEPLLTHAHYPAHLQIA 92 (208)
T ss_pred HHhCCCccCCHHHHHHHHHHH
Confidence 999999999999999998764
No 38
>KOG2200|consensus
Probab=99.81 E-value=5.7e-20 Score=176.74 Aligned_cols=141 Identities=26% Similarity=0.352 Sum_probs=107.5
Q ss_pred ceeeecccCH-HHHHHHHHHHHhhhhchhhhhhh-----hh--cCCCCCCCCCcHHHHHhhhCCCCcHHHHHHHHHHHhc
Q psy16474 122 TTITLCHASR-DVIKQHEEALLHLNETLPQLNSL-----IL--VNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQI 193 (264)
Q Consensus 122 ~~~t~~~~s~-~~~k~~~~~~~~~~~~~~~~~~~-----~~--~~~~~~vFG~~L~~~l~~~~~~iP~vv~~ci~~L~~~ 193 (264)
++..+-..+. ++.+.+.-++-.+++.+....-. .+ ...++.||||||..+++++|.++|.+|++.+.||+++
T Consensus 251 ~s~~I~d~~~~qm~~~~~~SLieLTA~~d~~~~~lK~kr~kk~d~kd~~vFGVPL~vll~rtG~~lP~~iQq~m~~lr~~ 330 (674)
T KOG2200|consen 251 GSTRIGDQSAQQMKKLHHLSLIELTALMDILGIQLKRKRAKKVDGKDGGVFGVPLTVLLQRTGQPLPLSIQQAMRYLRER 330 (674)
T ss_pred CCcccCCcCHHHHhhhhhhHHHHHHHHHHHhCchhhhhcccCCccCCCceeecCceeeeccCCCcCcHHHHHHHHHHHHh
Confidence 3344444444 44445555555555543322211 11 1235689999999999999999999999999999999
Q ss_pred CCCCCCcccccCCHHHHHHHHHHHhhccCCC-CCcCCCCHHHHHHHHHHHHhcCCCCCCChHhHHHHHHh
Q psy16474 194 GMDEEGLFRVTGGASKVKRLKTCLDAHCIKF-EDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAA 262 (264)
Q Consensus 194 Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~-~~~~~~D~h~vaslLK~yLReLPePLit~~ly~~~i~a 262 (264)
|++++||||++|..++|+.|++.++.....- ...+....|++|++||+|||+||+||||.++-+.|++.
T Consensus 331 ~Le~vGifRksGvksRIk~Lrq~lE~~~~~~~~~~d~~~~~DvAdlLKqffRdLPePL~t~k~~~aF~~i 400 (674)
T KOG2200|consen 331 GLETVGIFRKSGVKSRIKNLRQMLEAKFYNGEFNWDSQSAHDVADLLKQFFRDLPEPLFTVKYSEAFAQI 400 (674)
T ss_pred CccccceeecccHHHHHHHHHHHHhhcccCcccccchhhhhHHHHHHHHHHHhCCcccchhhHHHHHHHH
Confidence 9999999999999999999999998853321 12223479999999999999999999999999999875
No 39
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins. Graf exhibits GAP activity toward RhoA and Cdc42, but only weakly activates Rac1. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=99.81 E-value=6.9e-20 Score=159.66 Aligned_cols=84 Identities=38% Similarity=0.699 Sum_probs=72.2
Q ss_pred cHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHH-Hhhcc-----CCCCCcCCCCHHHHHHHHHHHHhcCCCCCCCh
Q psy16474 180 AFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTC-LDAHC-----IKFEDALEYDAHVLAGVLKLYLRELPEPLLTY 253 (264)
Q Consensus 180 P~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~-ld~~~-----~~~~~~~~~D~h~vaslLK~yLReLPePLit~ 253 (264)
+.+|.+|+++|+++|+.+|||||++|+.++|++|+.. +|.+. +++.. ..+|+|+||++||.|||+||+||+|+
T Consensus 29 ~~iv~~ci~~le~~gl~~EGIFR~sGs~~~i~~l~~~~~d~~~~~~~~id~~~-~~~d~h~va~lLK~fLReLPePLi~~ 107 (203)
T cd04374 29 FKFVRKCIEAVETRGINEQGLYRVVGVNSKVQKLLSLGLDPKTSTPGDVDLDN-SEWEIKTITSALKTYLRNLPEPLMTY 107 (203)
T ss_pred HHHHHHHHHHHHHcCCCCCCeeeCCCcHHHHHHHHHHHhCcCCCCcccccccc-ccccHHHHHHHHHHHHHcCCCCcCCH
Confidence 4579999999999999999999999999999999875 66642 22221 15799999999999999999999999
Q ss_pred HhHHHHHHhhC
Q psy16474 254 ALYEDWLAAAR 264 (264)
Q Consensus 254 ~ly~~~i~a~k 264 (264)
++|+.|+++++
T Consensus 108 ~~y~~~i~~~~ 118 (203)
T cd04374 108 ELHNDFINAAK 118 (203)
T ss_pred HHHHHHHHHHh
Confidence 99999998763
No 40
>KOG4269|consensus
Probab=99.77 E-value=3.3e-19 Score=177.40 Aligned_cols=101 Identities=35% Similarity=0.577 Sum_probs=86.6
Q ss_pred CCCCCCcHHHHH----hhhCCCCcHHHHHHHHHHH-hcCCCCCCcccccCCHHHHHHHHHHHhhc-cCCCCCc-CCCCHH
Q psy16474 161 KPMFCQPLEEHL----ALIGCKIAFPIELCTRALC-QIGMDEEGLFRVTGGASKVKRLKTCLDAH-CIKFEDA-LEYDAH 233 (264)
Q Consensus 161 ~~vFG~~L~~~l----~~~~~~iP~vv~~ci~~L~-~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~-~~~~~~~-~~~D~h 233 (264)
..|||.+|..-+ .++.-.+|.||.+|++||+ .+|+++|||||++|+...|+.|++.||.+ +.++... .+.|+|
T Consensus 897 TgIFG~~~~~kisv~t~~n~s~lP~VVyrCvEyle~~RgieEeGIyRlSGsaT~Ik~Lke~Fd~~~n~di~~~d~E~dVn 976 (1112)
T KOG4269|consen 897 TGIFGLPLNVKISVVTKRNVSGLPYVVYRCVEYLESCRGIEEEGIYRLSGSATDIKALKEQFDENVNKDILSMDSEMDVN 976 (1112)
T ss_pred ceeccccceeeEeeeeeecccCCchHHHHHHHHHHhccccchhceEEecccHHHHHHHHHHhccccCchhhhccccccHH
Confidence 369997665443 3345679999999999999 79999999999999999999999999998 4444432 245999
Q ss_pred HHHHHHHHHHhcCCCCCCChHhHHHHHH
Q psy16474 234 VLAGVLKLYLRELPEPLLTYALYEDWLA 261 (264)
Q Consensus 234 ~vaslLK~yLReLPePLit~~ly~~~i~ 261 (264)
+|||+||+|||+||+||++.++|..|..
T Consensus 977 ~IaGlLKLYlR~LP~~Ll~de~~~~F~~ 1004 (1112)
T KOG4269|consen 977 AIAGLLKLYLRELPEPLLTDEMYPLFEE 1004 (1112)
T ss_pred HHHHHHHHHHHhCCccccchhhhHHHHh
Confidence 9999999999999999999999999975
No 41
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases. GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers.
Probab=99.76 E-value=3.6e-18 Score=144.08 Aligned_cols=86 Identities=47% Similarity=0.789 Sum_probs=77.9
Q ss_pred CCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHHHHHHHHhcCCCCCCChHhHH
Q psy16474 178 KIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYE 257 (264)
Q Consensus 178 ~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vaslLK~yLReLPePLit~~ly~ 257 (264)
.||.++..|+++|+++|+++|||||++|+..++++++..+|.+.........+|+|++|++||.|||+||+||+|.+.|+
T Consensus 2 ~vP~~l~~~~~~l~~~g~~~egiFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~Lr~Lp~pli~~~~~~ 81 (174)
T smart00324 2 PIPIIVEKCIEYLEKRGLDTEGIYRVSGSKSRVKELREAFDSGPDPDLDLSEYDVHDVAGLLKLFLRELPEPLIPYELYE 81 (174)
T ss_pred CCChHHHHHHHHHHHcCCCccceeecCCcHHHHHHHHHHHhCCCCCCcccccCCHHHHHHHHHHHHHhCCCccCCHHHHH
Confidence 58999999999999999999999999999999999999999986422123467999999999999999999999999999
Q ss_pred HHHHhh
Q psy16474 258 DWLAAA 263 (264)
Q Consensus 258 ~~i~a~ 263 (264)
.|+++.
T Consensus 82 ~~~~~~ 87 (174)
T smart00324 82 EFIEAA 87 (174)
T ss_pred HHHHHH
Confidence 999865
No 42
>KOG1450|consensus
Probab=99.75 E-value=3.6e-18 Score=167.70 Aligned_cols=104 Identities=30% Similarity=0.549 Sum_probs=94.4
Q ss_pred CCCCCCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhcc-CCCCCcCCCCHHHHHHH
Q psy16474 160 MKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHC-IKFEDALEYDAHVLAGV 238 (264)
Q Consensus 160 ~~~vFG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~-~~~~~~~~~D~h~vasl 238 (264)
...+||++|+.++++.+..||.+|.+|+..|+..|++.+||||++|+...|++||.++|... .++.+..+.|+|+|+++
T Consensus 453 ~~~vFGs~Lealc~rE~~~vP~~V~~c~~~IE~~GLd~~GiYRVsgnl~~Vnklr~~~d~d~~l~l~~~~~~dihai~ga 532 (650)
T KOG1450|consen 453 FDKVFGSPLEALCQRENGLVPKIVRLCIEHIEKFGLDSDGIYRVSGNLASVNKLREQSDQDNSLDLADDRWDDIHAITGA 532 (650)
T ss_pred cCcccCccHHHHhhccCCCcchHHHHHHHHHhhhcccCCceeeecchHHHHHHHHHhcCccccccccccchhHHHHHHHH
Confidence 35799999999999999999999999999999999999999999999999999999999654 34433333499999999
Q ss_pred HHHHHhcCCCCCCChHhHHHHHHhh
Q psy16474 239 LKLYLRELPEPLLTYALYEDWLAAA 263 (264)
Q Consensus 239 LK~yLReLPePLit~~ly~~~i~a~ 263 (264)
||.||||||+||++..+..+|..|.
T Consensus 533 lK~ffreLpdpL~p~~l~~~f~~a~ 557 (650)
T KOG1450|consen 533 LKTFFRELPDPLFPKALSKDFTVAL 557 (650)
T ss_pred HHHHHHhcCCcccChhHhHHHHHHh
Confidence 9999999999999999999999875
No 43
>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation. Like all other GTPases, Rho proteins act as molecular switches, with an active GTP-bound form and an inactive GDP-bound form. The active conformation is promoted by guanine-nucleotide exchange factors, and the inactive state by GTPase-activating proteins (GAPs) which stimulate the intrinsic GTPase activity of small G proteins. This entry is a Rho/Rac/Cdc42-like GAP domain, that is found in a wide variety of large, multi-functional proteins []. A number of structure are known for this family [, , ]. The domain is composed of seven alpha helices. This domain is also known as the breakpoint cluster region-homology (BH) domain.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1RGP_A 1AM4_B 1GRN_B 2NGR_B 1OW3_A 1TX4_A 3BYI_B 1XA6_A 3FK2_B 1F7C_A ....
Probab=99.74 E-value=1.1e-17 Score=137.69 Aligned_cols=84 Identities=37% Similarity=0.655 Sum_probs=74.5
Q ss_pred cHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHHHHHHHHhcCCCCCCChHhHHHH
Q psy16474 180 AFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDW 259 (264)
Q Consensus 180 P~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vaslLK~yLReLPePLit~~ly~~~ 259 (264)
|.+|..|+++|+++|+.++||||++|+..++++|++.++.+.........+|+|++|++||.|||+||+||++.++|+.|
T Consensus 1 P~~l~~~~~~l~~~g~~~~gIFR~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~va~~lK~~L~~lp~pli~~~~~~~~ 80 (151)
T PF00620_consen 1 PRILNDCVDYLEKKGLETEGIFRIPGSSSEVQELRNKIDSGEPPNENLENYDVHDVASLLKRFLRELPEPLIPSELYDKF 80 (151)
T ss_dssp EHHHHHHHHHHHHHTTTSTTTTTSS--HHHHHHHHHHHHTTTTCSTTGTTSTHHHHHHHHHHHHHHSSSTSTTHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCCCCceeccCCHHHHHHHHHHHHhhhcccccccccChhhccccceeeeeccccchhhhhHHHHH
Confidence 78999999999999999999999999999999999999998753223456799999999999999999999999999999
Q ss_pred HHhh
Q psy16474 260 LAAA 263 (264)
Q Consensus 260 i~a~ 263 (264)
+++.
T Consensus 81 ~~~~ 84 (151)
T PF00620_consen 81 IAAS 84 (151)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 9653
No 44
>KOG4407|consensus
Probab=99.73 E-value=2.8e-18 Score=175.11 Aligned_cols=106 Identities=27% Similarity=0.487 Sum_probs=91.8
Q ss_pred CCCCCCCCcHHHHHh-hhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccC----CCCCcCCCCHH
Q psy16474 159 PMKPMFCQPLEEHLA-LIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCI----KFEDALEYDAH 233 (264)
Q Consensus 159 ~~~~vFG~~L~~~l~-~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~----~~~~~~~~D~h 233 (264)
...++|||+|.+.-. ..+.-||.+|+.|+..+|.+||.+.||||++||...|..|++.++.+.. +..+..+.|++
T Consensus 1153 ~~~~~~GVrl~dCP~~~~n~yVP~iV~~C~~vVEt~Gl~~vGIYRIPGN~AAIs~l~E~ln~~~f~~~v~~~DdrWrDvN 1232 (1973)
T KOG4407|consen 1153 APQPVLGVRLADCPTGSCNDYVPMIVQACVCVVETYGLDTVGIYRIPGNTAAISALKESLNNRGFLSKVESLDDRWRDVN 1232 (1973)
T ss_pred CcCcccccccccCCcccccccchHHHHHHHHHHhhcCccceeEEecCCcHHHHHHHHHHHhccccchhhhccccchhhhH
Confidence 345799999998743 3567799999999999999999999999999999999999999999842 22232233999
Q ss_pred HHHHHHHHHHhcCCCCCCChHhHHHHHHhhC
Q psy16474 234 VLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264 (264)
Q Consensus 234 ~vaslLK~yLReLPePLit~~ly~~~i~a~k 264 (264)
+|.+|||.|||.|||||||.++|..||+|-|
T Consensus 1233 VVSSLLK~F~RkLPepL~t~~~Y~~FIeAnr 1263 (1973)
T KOG4407|consen 1233 VVSSLLKMFLRKLPEPLLTDKLYPFFIEANR 1263 (1973)
T ss_pred HHHHHHHHHHHhCCcccccccchhhhhhhcc
Confidence 9999999999999999999999999999864
No 45
>KOG2710|consensus
Probab=99.73 E-value=1.1e-17 Score=157.76 Aligned_cols=106 Identities=30% Similarity=0.532 Sum_probs=91.4
Q ss_pred CCCCCCCCcHHHHHhhh-------C-----CCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhcc---CC
Q psy16474 159 PMKPMFCQPLEEHLALI-------G-----CKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHC---IK 223 (264)
Q Consensus 159 ~~~~vFG~~L~~~l~~~-------~-----~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~---~~ 223 (264)
....+|++++.+.+... | ..||.+|.+|..||.++|+.+.||||++|+..+|++|+..||++. .+
T Consensus 62 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~IP~vv~~c~~~lk~~~ls~~GIFRv~gs~kRvr~L~~~fd~~p~y~~~ 141 (412)
T KOG2710|consen 62 LDGLLLKVPLELSSKVASAETRLQSLNPGEGQIPRVVAKCGQYLKKNGLSVVGIFRVAGSIKRVRQLREEFDSPPDYGID 141 (412)
T ss_pred cceeeeccchhhhhhhhhccchhccCCccceeCcHHHHHHHHHHHHcCceeeeeeecCCchHHHHHHHHHhccCcccccc
Confidence 45567777777765421 1 349999999999999999999999999999999999999999974 34
Q ss_pred CCCcCCCCHHHHHHHHHHHHhcCCCCCCChHhHHHHHHhhC
Q psy16474 224 FEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264 (264)
Q Consensus 224 ~~~~~~~D~h~vaslLK~yLReLPePLit~~ly~~~i~a~k 264 (264)
..+...+.+|++|++||.|||+||+||||.+||+.|+.+++
T Consensus 142 ~~~~e~~nvHDvAaLLK~flr~lp~pLLP~~LY~~f~~p~k 182 (412)
T KOG2710|consen 142 VNDWEDFNVHDVAALLKEFLRDLPDPLLPLELYESFINPAK 182 (412)
T ss_pred ccccccccHHHHHHHHHHHHHhCCcccCCHHHHHHHhhhhc
Confidence 55566679999999999999999999999999999999875
No 46
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases. Small GTPases (G proteins) cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when bound to GDP. The Rho family of small G proteins, which includes Cdc42Hs, activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. G proteins generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude. The RhoGAPs are one of the major classes of regulators of Rho G proteins.
Probab=99.71 E-value=4.4e-17 Score=135.73 Aligned_cols=83 Identities=45% Similarity=0.750 Sum_probs=76.0
Q ss_pred cHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHHHHHHHHhcCCCCCCChHhHHHH
Q psy16474 180 AFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDW 259 (264)
Q Consensus 180 P~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vaslLK~yLReLPePLit~~ly~~~ 259 (264)
|.+|..|+++|+++|+.++||||++|+..++++|++.++.+.... ....+|+|++|++||.|||+||+||+|.++|+.|
T Consensus 1 P~~l~~~~~~l~~~~~~~~giFR~~g~~~~~~~l~~~~~~~~~~~-~~~~~~~~~va~~lK~~l~~Lp~pli~~~~~~~~ 79 (169)
T cd00159 1 PLIIEKCIEYLEKNGLNTEGIFRVSGSASKIEELKKKFDRGEDID-DLEDYDVHDVASLLKLYLRELPEPLIPFELYDEF 79 (169)
T ss_pred ChHHHHHHHHHHHcCCCcCCeeeCCCcHHHHHHHHHHHhcCCCCc-cccccCHHHHHHHHHHHHHcCCCccCCHHHHHHH
Confidence 789999999999999999999999999999999999999986432 3346799999999999999999999999999999
Q ss_pred HHhh
Q psy16474 260 LAAA 263 (264)
Q Consensus 260 i~a~ 263 (264)
++++
T Consensus 80 ~~~~ 83 (169)
T cd00159 80 IELA 83 (169)
T ss_pred HHHH
Confidence 9874
No 47
>KOG1453|consensus
Probab=99.62 E-value=7.7e-16 Score=159.54 Aligned_cols=102 Identities=30% Similarity=0.568 Sum_probs=94.6
Q ss_pred CCCCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHHHHHH
Q psy16474 162 PMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKL 241 (264)
Q Consensus 162 ~vFG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vaslLK~ 241 (264)
+.||..|.+.+...+..||.++.+|+.+|+.+|+.+|||||++|..++++.|...|+.+. ........|+|+++++||.
T Consensus 601 ~~fG~~l~~~~~~e~~~vP~i~~~c~~~ie~~~lr~eGiYRksG~~~~~e~l~~~~e~~~-~~v~l~~~dih~vtsVlK~ 679 (918)
T KOG1453|consen 601 PLFGVSLSELARYEPSTVPFILKKCLREIEAHLLRVEGIYRKSGSMNQVENLSAVFENGD-ALVLLSTPDIHAVTSVLKL 679 (918)
T ss_pred ccccHHHHHhhccCCCCCCHHHHHHHHHHHHhhhhccceeeccccHHHHHHHHHHhcCCc-cceecCCCChHHHHHHHHH
Confidence 389999999999999999999999999999999999999999999999999999999986 2334456799999999999
Q ss_pred HHhcCCCCCCChHhHHHHHHhhC
Q psy16474 242 YLRELPEPLLTYALYEDWLAAAR 264 (264)
Q Consensus 242 yLReLPePLit~~ly~~~i~a~k 264 (264)
|||+||+|||++.+|+.|+.++|
T Consensus 680 yLr~Lp~pIi~f~~y~~~~~~~~ 702 (918)
T KOG1453|consen 680 YLRKLPEPIIIFNLYDEFLSAAK 702 (918)
T ss_pred HHHhccccccccchHHHHHhhhc
Confidence 99999999999999999999875
No 48
>KOG3564|consensus
Probab=99.58 E-value=5.1e-15 Score=139.99 Aligned_cols=91 Identities=33% Similarity=0.453 Sum_probs=81.2
Q ss_pred hhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHHHHHHHHhcCCCCCCC
Q psy16474 173 ALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLT 252 (264)
Q Consensus 173 ~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vaslLK~yLReLPePLit 252 (264)
.....-||.+|..|+.+||.+|+.+|||||++|....+++|+..|-+|.. ......-|+|+++++||.|||+|-|||||
T Consensus 356 ~s~aPMIPalVVHCVneIEaRGLteeGLYRvsg~~rtvk~lkekfLR~Kt-~p~~g~~Dihvic~~lKdFLR~LkePLip 434 (604)
T KOG3564|consen 356 PSTAPMIPALVVHCVNEIEARGLTEEGLYRVSGCDRTVKRLKEKFLRGKT-TPHLGNDDIHVICCCLKDFLRNLKEPLIP 434 (604)
T ss_pred ccccccchHHHHHHHHHHHHccccccceeeccccHHHHHHHHHHHhccCC-CCccCCcchhHHHHHHHHHHHhccccccc
Confidence 33445699999999999999999999999999999999999999999875 23344459999999999999999999999
Q ss_pred hHhHHHHHHhhC
Q psy16474 253 YALYEDWLAAAR 264 (264)
Q Consensus 253 ~~ly~~~i~a~k 264 (264)
+.+..+|++|++
T Consensus 435 ~~~~rdf~eAa~ 446 (604)
T KOG3564|consen 435 FRLRRDFMEAAE 446 (604)
T ss_pred chHHHHHHHHhc
Confidence 999999999974
No 49
>KOG4406|consensus
Probab=99.56 E-value=2.8e-15 Score=140.05 Aligned_cols=99 Identities=32% Similarity=0.466 Sum_probs=88.7
Q ss_pred CCCCCCCcHHHHHhhh--CCCCcHHHHHHHHHHHhcC-CCCCCcccccCCHHHHHHHHHHHhhcc-CCCCCcCCC-CHHH
Q psy16474 160 MKPMFCQPLEEHLALI--GCKIAFPIELCTRALCQIG-MDEEGLFRVTGGASKVKRLKTCLDAHC-IKFEDALEY-DAHV 234 (264)
Q Consensus 160 ~~~vFG~~L~~~l~~~--~~~iP~vv~~ci~~L~~~G-l~~eGIFR~~G~~~~v~~Lk~~ld~~~-~~~~~~~~~-D~h~ 234 (264)
....||++|+-..+.. +..+|.+|..|+.+|..+| +.+||+||.+++.+.+.+++...|+|. +++. .+ |+|+
T Consensus 250 ~t~qFgvpLqf~~~~~~e~~~iPpiv~~tV~~L~~~~kl~tEG~FRrS~s~~~i~~~q~~~n~G~pVdle---~~~~~h~ 326 (467)
T KOG4406|consen 250 PTQQFGVPLQFIPEKNPEGESIPPIVRSTVEYLQAHGKLTTEGLFRRSASRSPIREVQELYNTGEPVDLE---VYKDLHA 326 (467)
T ss_pred chhhcCccHHHhcccCcccCCCCcHHHHHhhhhhccceecccceeccccCccchHHHHHHhcCCCcccHH---Hhccchh
Confidence 3468999999988765 7889999999999999999 999999999999999999999999996 3433 45 6999
Q ss_pred HHHHHHHHHhcCCCCCCChHhHHHHHH
Q psy16474 235 LAGVLKLYLRELPEPLLTYALYEDWLA 261 (264)
Q Consensus 235 vaslLK~yLReLPePLit~~ly~~~i~ 261 (264)
.|.+||.|||+||+||+|+++|+....
T Consensus 327 ~avllKtF~R~LpePL~t~~~y~~lt~ 353 (467)
T KOG4406|consen 327 PAVLLKTFLRSLPEPLLTFRLYESLTG 353 (467)
T ss_pred hHHHHHHHHhcCCcccchhhhhhhhhc
Confidence 999999999999999999999987653
No 50
>KOG1452|consensus
Probab=99.53 E-value=8.9e-15 Score=132.68 Aligned_cols=103 Identities=27% Similarity=0.290 Sum_probs=92.6
Q ss_pred CCCCCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCc-CC-CCHHHHHHH
Q psy16474 161 KPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDA-LE-YDAHVLAGV 238 (264)
Q Consensus 161 ~~vFG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~-~~-~D~h~vasl 238 (264)
..+||.+|+.+++++...-|+++.+|+.+||++|++..|+|++.|+..+-+-||..|+....+++.. +. -|.++|+++
T Consensus 182 rgvfG~~L~~lV~RE~~~~PIvlrR~~~EiEkRGvD~~Gly~lCGS~~KKkmLR~~fe~n~r~~el~~E~iPD~nvItg~ 261 (442)
T KOG1452|consen 182 RGVFGISLSRLVQREPESPPIVLRRLYAEIEKRGVDYSGLYSLCGSVEKKKMLRRDFEPNGRDFELGAESIPDYNVITGD 261 (442)
T ss_pred ccccchhhHhHhhcCCCCCchHHHHHHHHHHhcccccccceeeechhhHHHHHHHHhccCCcccccccccCCCcceeecc
Confidence 4689999999999999999999999999999999999999999999999999999999876555422 22 399999999
Q ss_pred HHHHHhcCCCCCCChHhHHHHHHhh
Q psy16474 239 LKLYLRELPEPLLTYALYEDWLAAA 263 (264)
Q Consensus 239 LK~yLReLPePLit~~ly~~~i~a~ 263 (264)
+|.|+|||||||+|...++.-++|+
T Consensus 262 ~kD~lrElpEPl~t~~~f~m~~dA~ 286 (442)
T KOG1452|consen 262 SKDELRELPEPLVTGQDFEMDFDAA 286 (442)
T ss_pred cHhHHHhCCCccccchhhhhhhhhh
Confidence 9999999999999999998888874
No 51
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=99.51 E-value=1.3e-14 Score=129.49 Aligned_cols=70 Identities=33% Similarity=0.461 Sum_probs=68.9
Q ss_pred hhhHhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhchHHHHHhhhhhhhhhhhhhccCCCCCcccccHHHH
Q psy16474 19 SEEEDTLATEMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEH 88 (264)
Q Consensus 19 ~~~~d~~~~~~~~~~~ke~~~~~~~~~~~~~~~~yh~~a~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~h 88 (264)
|+|||++++|||+|+++|.+|++++++++++|.+||++|+..|+..+|+|++.++.++.+|+||.+|++|
T Consensus 177 E~~kD~~~~dm~~~l~~e~e~~~~l~~lv~aQ~eYHr~a~e~Le~~~p~i~~~~~~~~~k~~fg~~leeh 246 (246)
T cd07618 177 EQCKDQLAADMYNFASKEGEYAKFFVLLLEAQADYHRKALAVIEKVLPEIQAHQDKWMEKPAFGTPLEEH 246 (246)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccC
Confidence 6899999999999999999999999999999999999999999999999999999999999999999998
No 52
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.48 E-value=4e-14 Score=126.25 Aligned_cols=70 Identities=30% Similarity=0.463 Sum_probs=68.6
Q ss_pred hhhHhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhchHHHHHhhhhhhhhhhhhhccCCCCCcccccHHHH
Q psy16474 19 SEEEDTLATEMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEH 88 (264)
Q Consensus 19 ~~~~d~~~~~~~~~~~ke~~~~~~~~~~~~~~~~yh~~a~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~h 88 (264)
+.|||++.+|||+|+++|.+|+.++++|+++|.+||++|+..|+..+|.|++.++++|-+|+||..|++|
T Consensus 179 e~~kd~~~~~m~~~l~~e~e~~~~l~~Lv~AQleYHr~A~eiLe~l~~~i~~~~~~~~~k~~fg~~leeh 248 (248)
T cd07619 179 EICRDQLSADMYSFVAKEIDYANYFQTLIEVQAEYHRKSLELLQSVLPQIKAHQEAWVEKPSYGKPLEEH 248 (248)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccCCCcccC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999988
No 53
>KOG1117|consensus
Probab=99.47 E-value=1.1e-13 Score=138.04 Aligned_cols=98 Identities=30% Similarity=0.481 Sum_probs=85.5
Q ss_pred CCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCC-cCCCCHHHHHHHHHHHH
Q psy16474 165 CQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFED-ALEYDAHVLAGVLKLYL 243 (264)
Q Consensus 165 G~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~-~~~~D~h~vaslLK~yL 243 (264)
|..|+++ +..+.+||.||.+||.|+.++||..|||||.+|...+++.|-..|-.+...+.. .....+.+|+++||+||
T Consensus 714 gt~Lqeq-qLs~~dIPvIVd~CI~FVTqyGl~cegIYrknG~~~~~~~lLeslr~Dars~~lregeh~vedVtdvLk~Fl 792 (1186)
T KOG1117|consen 714 GTALQEQ-QLSKNDIPVIVDSCIAFVTQYGLGCEGIYRKNGDPLHISRLLESLRKDARSVKLREGEHQVEDVTDVLKRFL 792 (1186)
T ss_pred cchhhhh-hccCCCCcEehHHHHHHHHHhCccceeeeccCCchHHHHHHHHHHhhccceeeccCCcchHHHHHHHHHHHH
Confidence 6667665 457889999999999999999999999999999999999999999777554331 22347899999999999
Q ss_pred hcCCCCCCChHhHHHHHHhh
Q psy16474 244 RELPEPLLTYALYEDWLAAA 263 (264)
Q Consensus 244 ReLPePLit~~ly~~~i~a~ 263 (264)
|+|++||+|.++|..|++|+
T Consensus 793 rdlddpLft~~~~~~w~eaa 812 (1186)
T KOG1117|consen 793 RDLDDPLFTKELYPYWIEAA 812 (1186)
T ss_pred HhCCccccchhhhhhHHHhh
Confidence 99999999999999999987
No 54
>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=99.32 E-value=2.5e-12 Score=114.53 Aligned_cols=52 Identities=17% Similarity=0.395 Sum_probs=50.9
Q ss_pred hhhHhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhchHHHHHhhhhhhhhhhh
Q psy16474 19 SEEEDTLATEMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQLNS 70 (264)
Q Consensus 19 ~~~~d~~~~~~~~~~~ke~~~~~~~~~~~~~~~~yh~~a~~~l~~~~~~l~~ 70 (264)
|+|||+|++|||+|+++|.+|+++|++++++|++|||+|+..|+..+|+|++
T Consensus 188 E~~kd~~~a~Mynfl~kE~e~a~~l~~lveaQ~~YHrqsl~~Le~~l~~~~~ 239 (257)
T cd07620 188 EQCKDQYSADLYHFATKEDSYANYFIRLLELQAEYHKNSLEFLDKNITELKE 239 (257)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999998
No 55
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=99.28 E-value=3e-12 Score=114.56 Aligned_cols=70 Identities=44% Similarity=0.704 Sum_probs=68.4
Q ss_pred hhhHhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhchHHHHHhhhhhhhhhhhhhccCCCCCcccccHHHH
Q psy16474 19 SEEEDTLATEMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEH 88 (264)
Q Consensus 19 ~~~~d~~~~~~~~~~~ke~~~~~~~~~~~~~~~~yh~~a~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~h 88 (264)
++|+|.++++||+|+++|.+++++++++++.|.+||++|+..|+..+|+|.+.+...+.+|+||.+|++|
T Consensus 175 e~~~e~~~~~M~~~l~~E~e~~~~l~~lv~aQl~YH~~a~e~L~~l~~~l~~~~~~~~~kp~fg~~l~eh 244 (244)
T cd07595 175 EQCRDALATDMYEFLAKEAEIASYLIDLIEAQREYHRTALSVLEAVLPELQEQIEQSPSKPVFGQPLEEH 244 (244)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Confidence 5799999999999999999999999999999999999999999999999999999999999999999887
No 56
>KOG4271|consensus
Probab=99.16 E-value=1.4e-11 Score=124.12 Aligned_cols=102 Identities=25% Similarity=0.497 Sum_probs=88.3
Q ss_pred CCCCCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhc-cCCCCCcCCCCHHHHHHHH
Q psy16474 161 KPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAH-CIKFEDALEYDAHVLAGVL 239 (264)
Q Consensus 161 ~~vFG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~-~~~~~~~~~~D~h~vaslL 239 (264)
...||.+|..... ...+||..+++|++|++..|+.+||+||++|+......++..|.+. +.++.. .+..+|++|+.+
T Consensus 915 s~~~~~~l~~~~t-~~k~ip~~~ekc~sfiedtg~~te~lyrv~gnkT~~eelrkqf~n~~~~dl~s-~d~~v~~vagAl 992 (1100)
T KOG4271|consen 915 SNYFLTPLQDAVT-SEKPIPIFLEKCKSFIEDTGLSTEGLYRVSGNKTDLEELRKQFLNDHNFDLSS-MDTTVNVVAGAL 992 (1100)
T ss_pred hhccCCccccccc-CCcccchHHHHHHHHHHhccchhhhheecCCCCccHHHHHHHHHhhccccccc-cccccccccCcc
Confidence 3589999987754 5677999999999999999999999999999999999999999773 333322 244799999999
Q ss_pred HHHHhcCCCCCCChHhHHHHHHhhC
Q psy16474 240 KLYLRELPEPLLTYALYEDWLAAAR 264 (264)
Q Consensus 240 K~yLReLPePLit~~ly~~~i~a~k 264 (264)
|.||..||+||+++.++..|.+|++
T Consensus 993 ksffa~Lpeplipys~h~~~~e~~k 1017 (1100)
T KOG4271|consen 993 KSFFACLPEPLIPYSYHPRLKEAMK 1017 (1100)
T ss_pred hhhhhhCCCcccCccCCcchhhhhh
Confidence 9999999999999999999998864
No 57
>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins. Msb1 was originally identified as a multicopy suppressor of temperature sensitive cdc42 mutation. Msb1 is a positive regulator of the Pkc1p-MAPK pathway and 1,3-beta-glucan synthesis, both pathways involve Rho1 regulation. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=98.75 E-value=3e-08 Score=86.16 Aligned_cols=82 Identities=27% Similarity=0.315 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHhcCCCCCCc---ccccCCHHHHHHH-HHHHhhccCCCCCc-------CCCCHHHHHHHHHHHHhcCCCC
Q psy16474 181 FPIELCTRALCQIGMDEEGL---FRVTGGASKVKRL-KTCLDAHCIKFEDA-------LEYDAHVLAGVLKLYLRELPEP 249 (264)
Q Consensus 181 ~vv~~ci~~L~~~Gl~~eGI---FR~~G~~~~v~~L-k~~ld~~~~~~~~~-------~~~D~h~vaslLK~yLReLPeP 249 (264)
.++..|+++|+.+|+++++| ||..++.+.++.+ +..|+.+....... ...|+|+++++||.|||.||.+
T Consensus 8 ~l~~~~t~eLk~rg~~t~~l~~pfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~e~~~~d~~~l~~~LK~~~~rLP~~ 87 (198)
T cd04401 8 GLIHNITEELKSRGLDTPLLFLPFRPELSPDKVRSLINSFFPSQNGQLQGTAELLDELRYADPHTLILVLKWIWSRLPGS 87 (198)
T ss_pred HHHHHHHHHHHhcccCcchhhcccCCCCCHHHHHHHHHHHCCCcCCcccchHHHHHHHhccChHHHHHHHHHHHHHCCCC
Confidence 46889999999999999999 9999999999999 66777663222211 1249999999999999999999
Q ss_pred CCCh-HhHHHHHHh
Q psy16474 250 LLTY-ALYEDWLAA 262 (264)
Q Consensus 250 Lit~-~ly~~~i~a 262 (264)
++++ +.|..|..+
T Consensus 88 ~v~~~~~Y~~F~~~ 101 (198)
T cd04401 88 KVIWWEVYEEFKAR 101 (198)
T ss_pred ccCCHHHHHHHHHH
Confidence 9999 999999874
No 58
>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins. This subgroup also contains two groups of closely related proteins, BRCC3 and DEPDC7, which both contain a C-terminal RhoGAP-like domain and an N-terminal DEP (Disheveled, Egl-10, and Pleckstrin) domain. The function(s) of BRCC3 and DEPDC7 are unknown. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=98.60 E-value=1e-07 Score=84.27 Aligned_cols=102 Identities=21% Similarity=0.214 Sum_probs=77.0
Q ss_pred CCCCCcHHHHHhhhCCCCcHHHHHHH--HHHHhcCCCC--CCcccccCCHHHHHHHHHHHhhccCCCC-C--cCCCCH--
Q psy16474 162 PMFCQPLEEHLALIGCKIAFPIELCT--RALCQIGMDE--EGLFRVTGGASKVKRLKTCLDAHCIKFE-D--ALEYDA-- 232 (264)
Q Consensus 162 ~vFG~~L~~~l~~~~~~iP~vv~~ci--~~L~~~Gl~~--eGIFR~~G~~~~v~~Lk~~ld~~~~~~~-~--~~~~D~-- 232 (264)
.+||+|+-+.+..++...|..+..-. +++..+-++. .|+||.++..+.+...++.++....... + ...++-
T Consensus 20 ~l~glp~Ld~vl~~~~~~p~~i~~~~~~~~~~~~~ldr~vv~~~~ks~~~~Wl~aA~~CLe~~Pd~~~~~~~~~~y~~~~ 99 (235)
T cd04405 20 QLVGLPLLEELLDPALVNPKHISYNMDPDVYTSNYLDREVVKLFSKSQLDHWLLSAMDCLANWPDQLVVDVSRPLYSQHD 99 (235)
T ss_pred HHcCCccHHHHhcccCCCCcchhhcccccccccccccchhhcccccccCcHHHHHHHHHHHhCCcccccccccccccccc
Confidence 47899988888888888888876554 4444444443 7999999999999999999988742211 1 111221
Q ss_pred ------HHHHHHHHHHHhcCCCCCCChHhHHHHHHhh
Q psy16474 233 ------HVLAGVLKLYLRELPEPLLTYALYEDWLAAA 263 (264)
Q Consensus 233 ------h~vaslLK~yLReLPePLit~~ly~~~i~a~ 263 (264)
.+|+.+++.||++|||||+|..+|+.|+..+
T Consensus 100 ~~~~~e~dv~~ti~qyf~~LpEPLLT~~l~~~~~~I~ 136 (235)
T cd04405 100 MLSGFKRLLFKTIAKYYGQLKEPLLTFHLFDIFVGIL 136 (235)
T ss_pred cccchHHHHHHHHHHHHhcCCCccCcchHHHHHHHHH
Confidence 2799999999999999999999999988754
No 59
>KOG4724|consensus
Probab=98.45 E-value=7.2e-08 Score=94.99 Aligned_cols=103 Identities=24% Similarity=0.262 Sum_probs=89.3
Q ss_pred hcCCCCCCCCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHH
Q psy16474 156 LVNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVL 235 (264)
Q Consensus 156 ~~~~~~~vFG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~v 235 (264)
.+..+..+||.||..++.... +|..++...-++-..|--++||||...+...+++||+.++.|.. .+.....++++
T Consensus 75 ~~~~~~~Lfg~pl~nic~~~~--lp~p~~d~l~~lc~kgp~t~giFr~~anek~~relKe~lnsgv~--v~l~~~~i~v~ 150 (741)
T KOG4724|consen 75 SNTADSFLFGWPLTNICVHFR--LPEPDEDFLLLLCCKGPCTRGIFRTIANEKNVRELKETLNSGVD--VGLKSGEIVVD 150 (741)
T ss_pred CCCCCccccCccchhhcccCC--CCChHHHHHHHHhhcCcccHHHHHHHHHHHHHHHHHHHhccccc--ccccccceEEe
Confidence 344566899999999987444 89999999888889999999999999999999999999999842 23445589999
Q ss_pred HHHHHHHHhcCCCCCCChHhHHHHHHh
Q psy16474 236 AGVLKLYLRELPEPLLTYALYEDWLAA 262 (264)
Q Consensus 236 aslLK~yLReLPePLit~~ly~~~i~a 262 (264)
|.++|.|+|.+|.-++.+++|+.|+-+
T Consensus 151 a~v~kdflr~ip~~~lSsdl~~hw~~~ 177 (741)
T KOG4724|consen 151 AAVDKDFLRTIPQLTLSSDLNSHWQLQ 177 (741)
T ss_pred ehhhhchhhhchhhhhccccHHHHhhc
Confidence 999999999999999999999999754
No 60
>KOG3565|consensus
Probab=97.99 E-value=4.9e-06 Score=83.69 Aligned_cols=87 Identities=26% Similarity=0.290 Sum_probs=75.0
Q ss_pred CCCCcHHHHHHHHHHHhcCCCCCCccc-ccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHHHHHHHHhcCCCC-CCCh
Q psy16474 176 GCKIAFPIELCTRALCQIGMDEEGLFR-VTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEP-LLTY 253 (264)
Q Consensus 176 ~~~iP~vv~~ci~~L~~~Gl~~eGIFR-~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vaslLK~yLReLPeP-Lit~ 253 (264)
+..||.++..|+.+++.+|+..+|||| ++|....|..++.++..|..-.....+-+... |.++|+|+|.|.+| ++++
T Consensus 215 ~q~iP~i~d~~~~l~~~~~l~~~~i~~k~s~~e~~v~~~~~k~~~g~~~~~~~~~~~~dS-a~vlk~~~~~le~P~~f~~ 293 (640)
T KOG3565|consen 215 FQFIPLIVDSLQRLEERRGLRLEGILRKVSGSESSVNDIISKCERGMRLAVGLNDPDLDS-AGVLKLYFRGLEEPADFPF 293 (640)
T ss_pred cccccHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhHhhhhccCcchhH-HHHHHHHHccCCCcccCcc
Confidence 567999999999999999999999999 99999999999999988832222333346666 99999999999999 9999
Q ss_pred HhHHHHHHhh
Q psy16474 254 ALYEDWLAAA 263 (264)
Q Consensus 254 ~ly~~~i~a~ 263 (264)
+.+..|++++
T Consensus 294 e~~~~~~~~~ 303 (640)
T KOG3565|consen 294 EDFGQPHDCA 303 (640)
T ss_pred ccccchhhhh
Confidence 9999998865
No 61
>KOG4370|consensus
Probab=97.88 E-value=1.5e-05 Score=75.46 Aligned_cols=105 Identities=23% Similarity=0.288 Sum_probs=78.4
Q ss_pred CCCCCCCCcHHHHHhh----hCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhcc-------------
Q psy16474 159 PMKPMFCQPLEEHLAL----IGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHC------------- 221 (264)
Q Consensus 159 ~~~~vFG~~L~~~l~~----~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~------------- 221 (264)
+.+++-|.++...+.. +|.+.|-.....+++.+.+|.-+||++|.+...++..+++..-..+.
T Consensus 47 ~~~~~~~l~~~~~v~~d~e~d~~~~~~~f~~~~~~~e~~~~fte~~s~~~~eksr~~e~k~k~kk~~k~~~aD~~~~~~~ 126 (514)
T KOG4370|consen 47 AIKRVLGLPLTESVSADPELDGIPLPSFFRYAIDFVEENGLFTEGISRLSPEKSRLDELKRKAKKGEKMIFADAHDAAGL 126 (514)
T ss_pred cCChhhcCCCCcccccCcccCCCcCcccchhhhhhhhccccccccccccCcccchhHHHHHhhhhhhhhhHHHHHHHHhH
Confidence 3456666666655432 45678888999999999999999999999998877666654332210
Q ss_pred -------CC-------------------CCCcCCCCHHHHHHHHHHHHhcCCCCCCChHhHHHHHHhh
Q psy16474 222 -------IK-------------------FEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAA 263 (264)
Q Consensus 222 -------~~-------------------~~~~~~~D~h~vaslLK~yLReLPePLit~~ly~~~i~a~ 263 (264)
+. .....++.+.+|||+||+|+|+||+||+|.++-..|.+++
T Consensus 127 ~k~~~~~i~Epvvpi~~p~V~r~Ci~e~~~~~~~l~p~tvcSllk~~lr~lpenlLT~el~~rFeev~ 194 (514)
T KOG4370|consen 127 IKRFLRQIPEPVVPIEFPSVARSCIREGLATTTQLTPKTVCSLLKSRLRRLPENLLTVELKTRFEEVF 194 (514)
T ss_pred HHHhhhccCCccccccchHHHHHHhhccccchhhcCchhHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Confidence 00 0122345799999999999999999999999999998764
No 62
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=97.54 E-value=0.00017 Score=63.84 Aligned_cols=55 Identities=13% Similarity=0.206 Sum_probs=51.8
Q ss_pred hhhHhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhchHHHHHhhhhhhhhhhhhhc
Q psy16474 19 SEEEDTLATEMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQLNSLIL 73 (264)
Q Consensus 19 ~~~~d~~~~~~~~~~~ke~~~~~~~~~~~~~~~~yh~~a~~~l~~~~~~l~~~~~ 73 (264)
++|++.....|++|...|.++...+.+++..|.+||++|...|+...|.|...+.
T Consensus 167 ees~E~a~~~M~n~le~e~e~~~~L~~lv~AQl~Yh~~a~eiL~~l~~~l~~~~~ 221 (223)
T cd07615 167 EESKELAERSMFNFLENDVEQVSQLSVLIEAALDYHRQSTEILEDLQSKLQNRIS 221 (223)
T ss_pred HHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999999999999999999999987654
No 63
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=97.30 E-value=0.0005 Score=60.99 Aligned_cols=55 Identities=18% Similarity=0.258 Sum_probs=51.3
Q ss_pred hhhHhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhchHHHHHhhhhhhhhhhhhhc
Q psy16474 19 SEEEDTLATEMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQLNSLIL 73 (264)
Q Consensus 19 ~~~~d~~~~~~~~~~~ke~~~~~~~~~~~~~~~~yh~~a~~~l~~~~~~l~~~~~ 73 (264)
+++++.....|++|++.|.++...+..+++.|.+||+++...|+...++|...+.
T Consensus 167 e~s~E~a~~~M~~il~~e~e~~~~L~~lveAQl~Yh~~~~e~L~~l~~~L~~~~~ 221 (223)
T cd07592 167 EESKELAENSMFNLLENDVEQVSQLSALVEAQLDYHRQSAEILEELQSKLQERIS 221 (223)
T ss_pred HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5688889999999999999999999999999999999999999999999987654
No 64
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=97.26 E-value=0.00057 Score=60.54 Aligned_cols=55 Identities=18% Similarity=0.266 Sum_probs=51.3
Q ss_pred hhhHhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhchHHHHHhhhhhhhhhhhhhc
Q psy16474 19 SEEEDTLATEMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQLNSLIL 73 (264)
Q Consensus 19 ~~~~d~~~~~~~~~~~ke~~~~~~~~~~~~~~~~yh~~a~~~l~~~~~~l~~~~~ 73 (264)
++|++.....|++|...|.+..+.+.++++.|.+||++|...|+...++|.+.+.
T Consensus 167 ees~E~a~~~M~n~l~~e~e~~~~L~~fveAQl~Yh~qa~eiL~~l~~~l~~~~~ 221 (223)
T cd07613 167 DESKEIAESSMFNLLEMDIEQVSQLSALVQAQLEYHKQATQILQQVTVKLEDRIR 221 (223)
T ss_pred HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5788899999999999999999999999999999999999999999999877553
No 65
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=96.71 E-value=0.0036 Score=55.53 Aligned_cols=55 Identities=20% Similarity=0.251 Sum_probs=50.7
Q ss_pred hhhHhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhchHHHHHhhhhhhhhhhhhhc
Q psy16474 19 SEEEDTLATEMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQLNSLIL 73 (264)
Q Consensus 19 ~~~~d~~~~~~~~~~~ke~~~~~~~~~~~~~~~~yh~~a~~~l~~~~~~l~~~~~ 73 (264)
+++++.....|+++.+.|.+....+..+++.|.+||++|...|+...++|...+.
T Consensus 167 ees~E~a~~~M~~il~~e~e~~~~L~~lveAQl~Yh~qa~eiL~~l~~~l~~~~~ 221 (223)
T cd07614 167 EESKEVAETSMHNLLETDIEQVSQLSALVDAQLDYHRQAVQILDELAEKLKRRMR 221 (223)
T ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5678888999999999999999999999999999999999999999999876553
No 66
>KOG4724|consensus
Probab=96.15 E-value=0.0098 Score=59.55 Aligned_cols=103 Identities=18% Similarity=0.123 Sum_probs=73.1
Q ss_pred CCCCCCCCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHH----HHHHHhh-ccCCCCCcCCCCH
Q psy16474 158 NPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKR----LKTCLDA-HCIKFEDALEYDA 232 (264)
Q Consensus 158 ~~~~~vFG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~----Lk~~ld~-~~~~~~~~~~~D~ 232 (264)
.-.+..||.||+.++. .+.++|..+......|...+..++++||..-...-+-+ ....+.. |. ..+.....+
T Consensus 411 ~l~kv~fdaPlS~~c~-d~gk~prPlq~~~tll~kknp~tpn~fprt~~~Alv~ks~s~~s~dd~s~gr--~vdv~sspv 487 (741)
T KOG4724|consen 411 ELAKVPFDAPLSVFCA-DQGKTPRPLQIQSTLLKKKNPATPNVFPRTNDEALVLKAFSSSSLDDSSDGR--PVDVPSSPV 487 (741)
T ss_pred hhhhCcCCCchhhccc-ccCCCCCChhhhhHHHHhcCCCCCccCCCccchhhhhhcccccchhhhccCC--cccCCCCCc
Confidence 3445789999999877 45556666666667778889999999988333222221 1122222 32 223445689
Q ss_pred HHHHHHHHHHHhcCCCCCCChHhHHHHHHhh
Q psy16474 233 HVLAGVLKLYLRELPEPLLTYALYEDWLAAA 263 (264)
Q Consensus 233 h~vaslLK~yLReLPePLit~~ly~~~i~a~ 263 (264)
|++++++|.|+|.+|.-++..+.+.++.+|.
T Consensus 488 ~taasv~KdfnRKtpRgi~sr~ihke~~ea~ 518 (741)
T KOG4724|consen 488 HTAASVHKDFNRKTPRGIPSREIHKESMEAT 518 (741)
T ss_pred hHHHHHHHHhhhhcCCCccchHHHHHhhhhh
Confidence 9999999999999999999999999998873
No 67
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=96.12 E-value=0.011 Score=52.15 Aligned_cols=49 Identities=18% Similarity=0.242 Sum_probs=45.1
Q ss_pred hhhHhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhchHHHHHhhhhhhhh
Q psy16474 19 SEEEDTLATEMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQ 67 (264)
Q Consensus 19 ~~~~d~~~~~~~~~~~ke~~~~~~~~~~~~~~~~yh~~a~~~l~~~~~~ 67 (264)
+++++.....|+++.+.|.+....+..+++.|.+||+++...|+....+
T Consensus 159 ees~E~a~~~M~~i~~~e~e~~~~L~~lv~AQl~Yh~q~~e~L~~l~~~ 207 (215)
T cd07593 159 EESSEDVEARMVAIKESEADQYRDLTDLLDAELDYHQQSLDVLREVRQS 207 (215)
T ss_pred HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678888999999999999999999999999999999999999887754
No 68
>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation [].
Probab=96.01 E-value=0.018 Score=55.69 Aligned_cols=84 Identities=23% Similarity=0.282 Sum_probs=66.1
Q ss_pred CcHHHHHHHHHHHhcCCCCCCcc---cccCCHHHHHHHHH-HHhhccCC----C----CCcCCCCHHHHHHHHHHHHhcC
Q psy16474 179 IAFPIELCTRALCQIGMDEEGLF---RVTGGASKVKRLKT-CLDAHCIK----F----EDALEYDAHVLAGVLKLYLREL 246 (264)
Q Consensus 179 iP~vv~~ci~~L~~~Gl~~eGIF---R~~G~~~~v~~Lk~-~ld~~~~~----~----~~~~~~D~h~vaslLK~yLReL 246 (264)
+-.+|..|.+.|..+|+++.+|| |-.-+.+.++.+.. .|+.+... . ......++|+++++||--+..|
T Consensus 8 v~~li~~~t~elK~rgldtp~lllpfrp~~~~~~~~~fi~~~f~~~~~~~~~~~~~~~~el~~~~~~~L~~~LKw~w~RL 87 (420)
T PF08101_consen 8 VKDLIHACTEELKSRGLDTPFLLLPFRPDSDPSALRRFIRSFFPQGNGSPVLDGEALIQELRFTSPHTLISVLKWIWSRL 87 (420)
T ss_pred HHHHHHHHHHHHHhccCCCchhccCCCCCCCHHHHHHHHHHhCCCccCcccccHHHHHHHHhcCCchHHHHHHHHHHHHc
Confidence 34568999999999999999998 77778888888755 55554321 0 0111239999999999999999
Q ss_pred CCCCCChHhHHHHHHh
Q psy16474 247 PEPLLTYALYEDWLAA 262 (264)
Q Consensus 247 PePLit~~ly~~~i~a 262 (264)
|.-+++++.|..|...
T Consensus 88 p~gvVgW~~Y~~Fk~~ 103 (420)
T PF08101_consen 88 PGGVVGWDSYEEFKRR 103 (420)
T ss_pred CCCccccHHHHHHHHH
Confidence 9999999999999753
No 69
>cd01249 PH_oligophrenin Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin Pleckstrin homology (PH) domain. Oligophrenin is composed of a PH domain, a rhoGAP domain and a proline rich region. Closely related proteins have a C-terminal SH3 domain. PH domains a share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=94.38 E-value=0.014 Score=45.82 Aligned_cols=46 Identities=20% Similarity=0.204 Sum_probs=39.3
Q ss_pred chHHHHHHHhhhh--hhcC--CccCCCcceeeecccCHHHHHHHHHHHHh
Q psy16474 98 FPIELCTRALCQV--RRLG--NFVQDSYTTITLCHASRDVIKQHEEALLH 143 (264)
Q Consensus 98 ~~~~~C~~rl~~~--~r~~--~~~~~~~~~~t~~~~s~~~~k~~~~~~~~ 143 (264)
+.+..|+++..+. +|+| +.+.++++++++||.|+++++.|.+++++
T Consensus 54 ~~l~sc~~r~~~~~dRRFCFei~~~~~~~~~~lQA~Se~~~~~Wi~A~dg 103 (104)
T cd01249 54 LTLKSCSRRKTESIDKRFCFDVEVEEKPGVITMQALSEKDRRLWIEAMDG 103 (104)
T ss_pred EeeeeccccccCCccceeeEeeeecCCCCeEEEEecCHHHHHHHHHhhcC
Confidence 5567899999876 8999 55577888999999999999999998875
No 70
>smart00721 BAR BAR domain.
Probab=94.18 E-value=0.11 Score=45.23 Aligned_cols=50 Identities=20% Similarity=0.301 Sum_probs=45.7
Q ss_pred hhHhHHHHHHHHHhhhhhh-HHHHHHHHHHHhhhchHHHHHhhhhhhhhhh
Q psy16474 20 EEEDTLATEMYYIIARECE-IAQVIVDYVHMQKKQHEEALLHLNETLPQLN 69 (264)
Q Consensus 20 ~~~d~~~~~~~~~~~ke~~-~~~~~~~~~~~~~~yh~~a~~~l~~~~~~l~ 69 (264)
.++++|..+|..|.+.+.+ +...+..++.+|..||+++...|+...+.|.
T Consensus 188 ~~~~~l~~~l~~l~~~~~~~~~~~l~~~~~aq~~y~~~~~~~l~~l~~~l~ 238 (239)
T smart00721 188 ESNAQLVEELPQLVASRVDFFVNCLQALIEAQLNFHRESYKLLQQLQQQLD 238 (239)
T ss_pred HHHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4688999999999999988 8999999999999999999999999988763
No 71
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=92.62 E-value=0.11 Score=46.91 Aligned_cols=40 Identities=33% Similarity=0.436 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHhhhhchhhhhhhhhcCCCCCCCCCcHHHH
Q psy16474 132 DVIKQHEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEH 171 (264)
Q Consensus 132 ~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~vFG~~L~~~ 171 (264)
.-...|+.+...++..+|.++..+..++.+|+||+||++|
T Consensus 207 aQ~eYHr~a~e~Le~~~p~i~~~~~~~~~k~~fg~~leeh 246 (246)
T cd07618 207 AQADYHRKALAVIEKVLPEIQAHQDKWMEKPAFGTPLEEH 246 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccC
Confidence 3445688888889999999999999999999999999975
No 72
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=90.78 E-value=1.9 Score=38.97 Aligned_cols=38 Identities=34% Similarity=0.488 Sum_probs=34.0
Q ss_pred HHHHHHHHHhhhhchhhhhhhhhcCCCCCCCCCcHHHH
Q psy16474 134 IKQHEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEH 171 (264)
Q Consensus 134 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~vFG~~L~~~ 171 (264)
...|+.+...++...|.+...+..++.+|+||++|++|
T Consensus 211 leYHr~A~eiLe~l~~~i~~~~~~~~~k~~fg~~leeh 248 (248)
T cd07619 211 AEYHRKSLELLQSVLPQIKAHQEAWVEKPSYGKPLEEH 248 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCCccCCCcccC
Confidence 35688888999999999999999999999999999875
No 73
>PF00784 MyTH4: MyTH4 domain; InterPro: IPR000857 The microtubule-based kinesin motors and actin-based myosin motors generate movements required for intracellular trafficking, cell division, and muscle contraction. In general, these proteins consist of a motor domain that generates movement and a tail region that varies widely from class to class and is thought to mediate many of the regulatory or cargo binding functions specific to each class of motor []. The Myosin Tail Homology 4 (MyTH4) domain has been identified as a conserved domain in the tail domains of several different unconventional myosins [] and a plant kinesin-like protein [], but has more recently been found in several non-motor proteins []. Although the function is not yet fully understood, there is an evidence that the MyTH4 domain of Myosin-X (Myo10) binds to microtubules and thus could provide a link between an actin-based motor protein and the microtubule cytoskeleton []. The MyTH4 domain is found in one or two copies associated with other domains, such as myosin head, kinesin motor, FERM, PH, SH3 and IQ. The domain is predicted to be largely alpha-helical, interrupted by three or four turns. The MyTH4 domain contains four highly conserved regions designated MGD (consensus sequence L(K/R)(F/Y)MGDhP, LRDE (consensus LRDEhYCQhhKQHxxxN), RGW (consensus RGWxLh), and ELEA (RxxPPSxhELEA), where h indicates a hydrophobic residue and x is any residue [].; GO: 0005856 cytoskeleton; PDB: 3AU5_A 3AU4_A 3PZD_A 3PVL_A.
Probab=90.00 E-value=0.095 Score=41.31 Aligned_cols=78 Identities=13% Similarity=0.114 Sum_probs=53.3
Q ss_pred hhhhHHHHHHHHHHHhhhchHHHHHhhhhhhhhhhhhhccCCCCCcccccHHHHHhh--hCCcccchHHHHHHHhhhhhh
Q psy16474 35 RECEIAQVIVDYVHMQKKQHEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEHLAL--IGCKIAFPIELCTRALCQVRR 112 (264)
Q Consensus 35 ke~~~~~~~~~~~~~~~~yh~~a~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~hl~~--~g~~I~~~~~~C~~rl~~~~r 112 (264)
+++-|++.++|+..+ +........|++..--...+.++....+++..|+..+... .+..++..+..|.++|....+
T Consensus 20 rDEiy~QliKQtt~n--p~~~s~~r~W~Ll~~~~~~f~PS~~l~~yL~~fl~~~~~~~~~~~~~~~~a~~c~~~L~~~~~ 97 (114)
T PF00784_consen 20 RDEIYCQLIKQTTNN--PSPDSCIRGWQLLALCCSCFPPSKDLLPYLRNFLNRHADSQESDPEVGKYAQYCLRRLKRTKK 97 (114)
T ss_dssp HHHHHHHHHHHTSS---SSCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHCCHCHHSTTSHHHCCHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHCC--CchhhHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHcCcccCCCchHHHHHHHHHHHHHHHhh
Confidence 567789999999888 4456667788887766666777777777776666666543 256788999999999987765
Q ss_pred cC
Q psy16474 113 LG 114 (264)
Q Consensus 113 ~~ 114 (264)
.|
T Consensus 98 ~g 99 (114)
T PF00784_consen 98 NG 99 (114)
T ss_dssp H-
T ss_pred cc
Confidence 55
No 74
>KOG1118|consensus
Probab=89.06 E-value=1 Score=41.72 Aligned_cols=58 Identities=17% Similarity=0.193 Sum_probs=48.5
Q ss_pred hhHhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhchHHHHHhhhhhhhhhhhhhccCCC
Q psy16474 20 EEEDTLATEMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQLNSLILVNPM 77 (264)
Q Consensus 20 ~~~d~~~~~~~~~~~ke~~~~~~~~~~~~~~~~yh~~a~~~l~~~~~~l~~~~~~~~~ 77 (264)
+.+...-..|+++..-|.+=-.-+.+|+..|-+||++|.+.|+..--.+.+.+.....
T Consensus 187 ESkE~aE~sM~nlle~d~eqvsqL~~Li~aqLdfhrqs~~iL~~l~~~l~~r~r~a~~ 244 (366)
T KOG1118|consen 187 ESKELAEDSMFNLLENDVEQVSQLSALIQAQLDFHRQSTQILQELQMKLFSRIRDASS 244 (366)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Confidence 3444556789999999999999999999999999999999999988887776665544
No 75
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=88.93 E-value=1.2 Score=37.93 Aligned_cols=49 Identities=20% Similarity=0.314 Sum_probs=44.4
Q ss_pred hhHhHHHHHHHHHhhhhhhHH-HHHHHHHHHhhhchHHHHHhhhhhhhhh
Q psy16474 20 EEEDTLATEMYYIIARECEIA-QVIVDYVHMQKKQHEEALLHLNETLPQL 68 (264)
Q Consensus 20 ~~~d~~~~~~~~~~~ke~~~~-~~~~~~~~~~~~yh~~a~~~l~~~~~~l 68 (264)
...+.|..+|-.|.+.+.++. ..+.+++..|..||.++...|+...|.|
T Consensus 179 ~~~~~l~~~l~~l~~~~~~~l~~~l~~~i~~q~~~~~~~~~~l~~l~~~l 228 (229)
T PF03114_consen 179 ALNEELKEELPKLFAKRQDILEPCLQSFIEAQLQYFQQLYQILEELQPQL 228 (229)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456788999999998888888 9999999999999999999999998876
No 76
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=86.06 E-value=3.8 Score=36.83 Aligned_cols=38 Identities=47% Similarity=0.692 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhhhchhhhhhhhhcCCCCCCCCCcHHHH
Q psy16474 134 IKQHEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEH 171 (264)
Q Consensus 134 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~vFG~~L~~~ 171 (264)
+..|+.+...++..+|.+...+.....+|+||++|++|
T Consensus 207 l~YH~~a~e~L~~l~~~l~~~~~~~~~kp~fg~~l~eh 244 (244)
T cd07595 207 REYHRTALSVLEAVLPELQEQIEQSPSKPVFGQPLEEH 244 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCC
Confidence 35688888888889999999999999999999999864
No 77
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=84.94 E-value=2.1 Score=38.54 Aligned_cols=43 Identities=28% Similarity=0.240 Sum_probs=37.1
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHhhhchHHHHHhhhhhhhhh
Q psy16474 26 ATEMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQL 68 (264)
Q Consensus 26 ~~~~~~~~~ke~~~~~~~~~~~~~~~~yh~~a~~~l~~~~~~l 68 (264)
+..++..+.+..+....+..++..|..||+++...|+..++.+
T Consensus 200 a~~~M~~il~~~e~i~~L~~fv~AQl~Yh~~~~e~L~~l~~~~ 242 (242)
T cd07600 200 AVELMKEVLDNPEPLQLLKELVKAQLAYHKTAAELLEELLSVL 242 (242)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 5566666777799999999999999999999999999887653
No 78
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=82.31 E-value=2.5 Score=37.72 Aligned_cols=38 Identities=11% Similarity=0.044 Sum_probs=34.3
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHhhhchHHHHHhhhhhh
Q psy16474 28 EMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETL 65 (264)
Q Consensus 28 ~~~~~~~ke~~~~~~~~~~~~~~~~yh~~a~~~l~~~~ 65 (264)
-|.++.+.|.+....+..+++.|.+||+++-..|+..-
T Consensus 189 ~m~~i~~~~~e~~~~L~~lv~AQl~Yh~~~~e~L~~L~ 226 (229)
T cd07616 189 LLEGISSTHAHHLRCLNDFVEAQMTYYAQCYQYMLDLQ 226 (229)
T ss_pred HHHhhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888999999999999999999999999887654
No 79
>KOG1453|consensus
Probab=81.94 E-value=0.33 Score=51.49 Aligned_cols=99 Identities=23% Similarity=0.349 Sum_probs=76.5
Q ss_pred CCCCcHHHH-H-hhhCCCCcHHHHH-HHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccC---CCCCcCC-C-CHHH
Q psy16474 163 MFCQPLEEH-L-ALIGCKIAFPIEL-CTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCI---KFEDALE-Y-DAHV 234 (264)
Q Consensus 163 vFG~~L~~~-l-~~~~~~iP~vv~~-ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~---~~~~~~~-~-D~h~ 234 (264)
++|+++..+ . .......|.++.. |.......|....|+||.+|+...+...+..+|.... ++..... + ++..
T Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~vs~~~~~e~~~~g~~s~~l~r~~~~~~~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~ 541 (918)
T KOG1453|consen 462 ILGTDLTTLSVNKDLNSNRPLSVSRSLERESRSPGALSRGLFRVSGFSSTIESKKNAFDRKGQSKKDASPNVHKSKEVNL 541 (918)
T ss_pred ccccCccccccchhhhcccCcccccchhcccCCCCcccccccccCCccccccchhhccCccccchhccCCCccccccchh
Confidence 788887776 3 3345556777877 7788888899999999999999999999999988542 1111111 2 5667
Q ss_pred HHHHHHHHHhcC--CCCCCChHhHHHHHH
Q psy16474 235 LAGVLKLYLREL--PEPLLTYALYEDWLA 261 (264)
Q Consensus 235 vaslLK~yLReL--PePLit~~ly~~~i~ 261 (264)
.++.++.|+|.+ |.|..+...|..|++
T Consensus 542 ~sg~~~~~~r~~~~P~~c~~c~~~~~~~~ 570 (918)
T KOG1453|consen 542 HSGALKHYLRSLRKPAPCRTCETYSWFME 570 (918)
T ss_pred ccCcchhhhhcccCCcccccccccchhhh
Confidence 777999999999 999999998888874
No 80
>KOG1449|consensus
Probab=77.95 E-value=0.94 Score=45.22 Aligned_cols=133 Identities=14% Similarity=0.010 Sum_probs=77.5
Q ss_pred hhCCcccchHHHHHHHhhhhhhcCCccCCCcceeeecccCHHHHHHHHHHHHhhhh-chhhhhhhhhcCCCCCCCCCcHH
Q psy16474 91 LIGCKIAFPIELCTRALCQVRRLGNFVQDSYTTITLCHASRDVIKQHEEALLHLNE-TLPQLNSLILVNPMKPMFCQPLE 169 (264)
Q Consensus 91 ~~g~~I~~~~~~C~~rl~~~~r~~~~~~~~~~~~t~~~~s~~~~k~~~~~~~~~~~-~~~~~~~~~~~~~~~~vFG~~L~ 169 (264)
+.++.||-....|+.++..+.-.... +.-|.++. ...... ....+.+..........||.-|.
T Consensus 152 rsfFnLG~s~sdc~~k~~~srlp~~~-------~~~q~as~---------~~~~T~r~akymeTL~sl~~~~~~~gl~lt 215 (670)
T KOG1449|consen 152 RSFFNLGASLSDCIFKRRFSRLPELP-------PPPQGASA---------AQMLTPRLAKYMETLSSLVDSNLNCGLVLT 215 (670)
T ss_pred hhhhcccccchhhHHhhhhhcCCCCC-------Cchhhhhh---------hhhhcchHHHHHHHHhcccccCccccceec
Confidence 55789999999998777664322211 11122220 000000 01111122233445678888888
Q ss_pred HHHhhhCCCCcH-HHHHHHHHHHh---cC--CCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCC--CHHHHHHHHHH
Q psy16474 170 EHLALIGCKIAF-PIELCTRALCQ---IG--MDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEY--DAHVLAGVLKL 241 (264)
Q Consensus 170 ~~l~~~~~~iP~-vv~~ci~~L~~---~G--l~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~--D~h~vaslLK~ 241 (264)
......|+.||. .+.+|+.-+.. ++ ...+|.++++. |.|.....+...+ |+.++...++.
T Consensus 216 r~~~~~G~~lpas~~g~~C~s~~~~~q~~ei~~~~g~l~a~~------------D~gae~d~~af~~p~di~v~S~d~dp 283 (670)
T KOG1449|consen 216 RMEVGLGRGLPASEWGRGCVSHHAVTQHREILDGNGVLSAVE------------DEGAEVDGEAFRWPSDIVVESWDMDP 283 (670)
T ss_pred ceeeccccccchhhhccchhccccchhccCCcccCcceeccc------------cccccccccccCCccceeeeccccCh
Confidence 887778999999 77777776654 22 23445555544 4443221222222 88889999999
Q ss_pred HHhcCCCCCC
Q psy16474 242 YLRELPEPLL 251 (264)
Q Consensus 242 yLReLPePLi 251 (264)
|+|++|.|+.
T Consensus 284 ~s~Q~~pp~~ 293 (670)
T KOG1449|consen 284 YSRQLPPPYP 293 (670)
T ss_pred hhhhcCCCCc
Confidence 9999999954
No 81
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=67.17 E-value=13 Score=33.18 Aligned_cols=42 Identities=12% Similarity=0.088 Sum_probs=36.8
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHhhhchHHHHHhhhhhhhh
Q psy16474 26 ATEMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQ 67 (264)
Q Consensus 26 ~~~~~~~~~ke~~~~~~~~~~~~~~~~yh~~a~~~l~~~~~~ 67 (264)
..-|.++...+.+--..+-.++..|..||+++...|+...+.
T Consensus 187 ~~~M~~i~~~~~~~~~~L~~lv~AQl~Yh~q~~e~L~~l~~~ 228 (229)
T cd07594 187 KLLLEGISSTHANHLRCLRDFVEAQMTYYAQCYQYMDDLQRQ 228 (229)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456888999899999999999999999999999998876654
No 82
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=61.75 E-value=19 Score=31.97 Aligned_cols=39 Identities=13% Similarity=0.143 Sum_probs=34.9
Q ss_pred HHHHhhhhhhHHHHHHHHHHHhhhchHHHHHhhhhhhhh
Q psy16474 29 MYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQ 67 (264)
Q Consensus 29 ~~~~~~ke~~~~~~~~~~~~~~~~yh~~a~~~l~~~~~~ 67 (264)
|+++..-|.+=-.-+-++++.|.+||+++-..|+...+.
T Consensus 181 M~~il~~~~e~l~~L~~lv~AQl~Yh~q~~e~L~~l~~~ 219 (220)
T cd07617 181 LEGISSTHVNHLRCLHEFVEAQATYYAQCYRHMLDLQKQ 219 (220)
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999998888999999999999999999998876544
No 83
>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].
Probab=61.33 E-value=18 Score=33.51 Aligned_cols=39 Identities=23% Similarity=0.247 Sum_probs=31.7
Q ss_pred HHHhhhhhhHHHHHHHHHHHhhhchHHHHHhhhhhhhhh
Q psy16474 30 YYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQL 68 (264)
Q Consensus 30 ~~~~~ke~~~~~~~~~~~~~~~~yh~~a~~~l~~~~~~l 68 (264)
+.=+.+-.+.-..+..++..|..||++|...|+..+.+|
T Consensus 249 Mk~vl~~~e~l~~Lk~lv~AQl~Yhk~aae~L~~~~~~l 287 (289)
T PF10455_consen 249 MKEVLDNSEPLRLLKELVKAQLEYHKKAAEALSELLKSL 287 (289)
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333344456678899999999999999999999999876
No 84
>smart00139 MyTH4 Domain in Myosin and Kinesin Tails. Domain present twice in myosin-VIIa, and also present in 3 other myosins.
Probab=60.73 E-value=3.5 Score=34.00 Aligned_cols=65 Identities=9% Similarity=-0.074 Sum_probs=42.6
Q ss_pred hhhhHHHHHHHHHHHhhhchHHHHHhhhhhhhhhhhhhccCCCCCcccccHHHHHhhhCCc--ccchHHHHHH
Q psy16474 35 RECEIAQVIVDYVHMQKKQHEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEHLALIGCK--IAFPIELCTR 105 (264)
Q Consensus 35 ke~~~~~~~~~~~~~~~~yh~~a~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~hl~~~g~~--I~~~~~~C~~ 105 (264)
+++-|+|.++|+..+ +.......+|++..--...|.++. .+..+|..|+.+...+ .+-++..|..
T Consensus 62 rDEiy~QLiKQtt~N--p~~~s~~rgW~Ll~l~~~~FpPS~----~l~~yL~~~l~~~~~~~~~~~~a~~c~~ 128 (144)
T smart00139 62 RDEIYCQLIKQLTDN--PSRQSEERGWELLYLCTSLFPPSE----RLLPYLLQFLSRRADQPSEQGLAKYCLY 128 (144)
T ss_pred HHHHHHHHHHHHhCC--CCchHHHHHHHHHHHHHhHcCChH----HHHHHHHHHHHhcCCCccHHHHHHHHHh
Confidence 467899999999988 555677778887765554454444 5555666666554432 3456777764
No 85
>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins. Nadrin, also named Rich-1, has been shown to be involved in the regulation of Ca2+-dependent exocytosis in neurons and recently has been implicated in tight junction maintenance in mammalian epithelium. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=50.00 E-value=17 Score=31.27 Aligned_cols=33 Identities=52% Similarity=0.863 Sum_probs=30.4
Q ss_pred CCcccccHHHHHhhhCCcccchHHHHHHHhhhh
Q psy16474 78 KPMFCQPLEEHLALIGCKIAFPIELCTRALCQV 110 (264)
Q Consensus 78 ~~~~~~~l~~hl~~~g~~I~~~~~~C~~rl~~~ 110 (264)
+|+||+.|++..+..|..|-.+...|...|.+.
T Consensus 2 ~~~FG~~L~~~~~~~~~~iP~~v~~~i~~L~~~ 34 (203)
T cd04386 2 KPVFGTPLEEHLKRTGREIALPIEACVMCLLET 34 (203)
T ss_pred CCcCCCCHHHHHHHcCCCCCHHHHHHHHHHHHc
Confidence 689999999999999999999999999998874
No 86
>PF10456 BAR_3_WASP_bdg: WASP-binding domain of Sorting nexin protein; InterPro: IPR019497 The C-terminal region of the Sorting nexin group of proteins appears to carry a BAR-like (Bin/amphiphysin/Rvs) domain. This domain is very diverse and the similarities with other BAR domains are few. In the Sorting nexins it is associated with IPR001683 from INTERPRO, and in combination with PX appears to be necessary to bind WASP along with p85 to form a multimeric signalling complex []. ; PDB: 2RAK_A 2RAI_A 3DYU_C 2RAJ_A 3DYT_A.
Probab=46.62 E-value=49 Score=29.67 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=38.2
Q ss_pred HHHHHHHHh-hhhhhHHHHHHHHHHHhhhchHHHHHhhhhhhh
Q psy16474 25 LATEMYYII-ARECEIAQVIVDYVHMQKKQHEEALLHLNETLP 66 (264)
Q Consensus 25 ~~~~~~~~~-~ke~~~~~~~~~~~~~~~~yh~~a~~~l~~~~~ 66 (264)
+.|+|-||- -+..+|......++..|..||++..+.|+..+.
T Consensus 192 ~lAEm~hfh~~r~~Df~~~m~~yL~~Qi~Fyq~i~~kLe~a~~ 234 (237)
T PF10456_consen 192 VLAEMNHFHQERVEDFKSMMKTYLQQQIAFYQQIAEKLEQALQ 234 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999987 689999999999999999999999999998874
No 87
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=46.58 E-value=53 Score=26.47 Aligned_cols=45 Identities=16% Similarity=0.262 Sum_probs=34.1
Q ss_pred hHhHHHHHHHHHh-hhhhhHHHHHHHHHHHhhhchHHHHHhhhhhh
Q psy16474 21 EEDTLATEMYYII-ARECEIAQVIVDYVHMQKKQHEEALLHLNETL 65 (264)
Q Consensus 21 ~~d~~~~~~~~~~-~ke~~~~~~~~~~~~~~~~yh~~a~~~l~~~~ 65 (264)
.+..+..+|-.|. .+..++...+.++++.|..|+.++...|+...
T Consensus 147 ~~~~~~~~l~~~~~~~~~~~~~~L~~~~~~q~~~~~~~~~~~~~l~ 192 (194)
T cd07307 147 LREELIEDLNKLEEKRKELFLSLLLSFIEAQSEFFKEVLKILEQLL 192 (194)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHhhc
Confidence 3445566666666 34456899999999999999999998876654
No 88
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=37.94 E-value=87 Score=26.29 Aligned_cols=43 Identities=16% Similarity=0.283 Sum_probs=34.9
Q ss_pred HHHHHHHHh-hhhhhHHHHHHHHHHHhhhchHHHHHhhhhhhhh
Q psy16474 25 LATEMYYII-ARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQ 67 (264)
Q Consensus 25 ~~~~~~~~~-~ke~~~~~~~~~~~~~~~~yh~~a~~~l~~~~~~ 67 (264)
...++=.|- .+..++...+..+++.|..|+++.++.|+...|+
T Consensus 175 ~~~El~~f~~~~~~dlk~~l~~~~~~qi~~~~~~~~~W~~~~~~ 218 (218)
T cd07596 175 LKEELKRFHEERARDLKAALKEFARLQVQYAEKIAEAWESLLPE 218 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 345555555 3678899999999999999999999999988753
No 89
>PF09088 MIF4G_like: MIF4G like; InterPro: IPR015172 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 1", and is found in nuclear cap-binding proteins and eIF4G. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA.; GO: 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A.
Probab=29.23 E-value=24 Score=30.61 Aligned_cols=32 Identities=19% Similarity=0.037 Sum_probs=27.7
Q ss_pred CCCCCcHHHHHhhhCCCCcHHHHHHHHHHHhc
Q psy16474 162 PMFCQPLEEHLALIGCKIAFPIELCTRALCQI 193 (264)
Q Consensus 162 ~vFG~~L~~~l~~~~~~iP~vv~~ci~~L~~~ 193 (264)
-.||.=|.++++.....+|.++.++++++.++
T Consensus 90 iyY~sllielCk~~P~~i~pv~~~air~ly~~ 121 (191)
T PF09088_consen 90 IYYHSLLIELCKLSPSAIPPVLGRAIRFLYRN 121 (191)
T ss_dssp HHHHHHHHHHHHHSTTTHHHHHHHHHHHHHHG
T ss_pred hHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Confidence 35677788899988889999999999999976
No 90
>COG4835 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.52 E-value=37 Score=26.94 Aligned_cols=46 Identities=20% Similarity=0.199 Sum_probs=32.5
Q ss_pred CCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHHHHHHHHhcC
Q psy16474 198 EGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLREL 246 (264)
Q Consensus 198 eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vaslLK~yLReL 246 (264)
---|+++|..|++..++..+-.... +....++..+|.-|-.++..|
T Consensus 61 lenfvisG~ISqi~~i~~~iv~e~s---eleqeeve~La~Plld~lkRL 106 (124)
T COG4835 61 LENFVISGRISQINQIKDRIVKEPS---ELEQEEVEGLAAPLLDMLKRL 106 (124)
T ss_pred eeeeEEeeehHHHHHHHhHhccCHH---HhhHHHHHHHHHHHHHHHHHh
Confidence 4569999999999999998754322 233447777777666666655
No 91
>KOG4271|consensus
Probab=27.13 E-value=46 Score=35.57 Aligned_cols=77 Identities=13% Similarity=0.014 Sum_probs=51.3
Q ss_pred CcHHHHHHHHHHHhcCCCCCC---cccccC-CHHHHHHHHHHHh-hccCCCCCcCCCCHH--HHHHHHH--HHHhcCCCC
Q psy16474 179 IAFPIELCTRALCQIGMDEEG---LFRVTG-GASKVKRLKTCLD-AHCIKFEDALEYDAH--VLAGVLK--LYLRELPEP 249 (264)
Q Consensus 179 iP~vv~~ci~~L~~~Gl~~eG---IFR~~G-~~~~v~~Lk~~ld-~~~~~~~~~~~~D~h--~vaslLK--~yLReLPeP 249 (264)
-|.+..+-+.+|+..|+..|| |-|.+. +...|..=...++ .|...+.....++|| .|...++ .-||.++..
T Consensus 371 sp~~~~knL~~l~~~Gl~~E~~n~I~~qsa~D~~~id~kiyE~s~dgkt~~~v~~~~~ph~s~v~e~Ie~~~~lr~~~~~ 450 (1100)
T KOG4271|consen 371 SPNIDEKNLVILGKDGLAGEGANEIRRQSADDVYVIDGKIYELSIDGKTRLPVNSFQQPHLSYVGESIEKSHSLRQQGQQ 450 (1100)
T ss_pred CcccchhhhhhhhhcccchhhhHHHHHhcccchhhhhhhhhhcccccccccchhhhcCcchhHHHhhhhhhhhhhhcccc
Confidence 378899999999999999999 888888 5555554444554 454444333334888 4666666 556766655
Q ss_pred CCChHh
Q psy16474 250 LLTYAL 255 (264)
Q Consensus 250 Lit~~l 255 (264)
+.+...
T Consensus 451 ~~~~~~ 456 (1100)
T KOG4271|consen 451 IAPKLQ 456 (1100)
T ss_pred cCCccc
Confidence 554433
No 92
>KOG4848|consensus
Probab=26.66 E-value=1.9e+02 Score=25.25 Aligned_cols=51 Identities=18% Similarity=0.057 Sum_probs=42.6
Q ss_pred hhHhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhchHHHHHhhhhhhhhhhh
Q psy16474 20 EEEDTLATEMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQLNS 70 (264)
Q Consensus 20 ~~~d~~~~~~~~~~~ke~~~~~~~~~~~~~~~~yh~~a~~~l~~~~~~l~~ 70 (264)
.-|-+++++.=-|-.+|++|+.....+....+.||.+-....+..=.++++
T Consensus 118 slRi~~~~e~~k~~~Re~~iak~m~K~pq~~a~~~a~~~k~e~~a~a~~~r 168 (225)
T KOG4848|consen 118 SLRILYTKEPEKFTFREAEIAKNMKKYPQTLAKYEASLVKQEQEADAKEVR 168 (225)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHhhHHHHH
Confidence 356677888888899999999999999999999999988888777666554
No 93
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=26.57 E-value=77 Score=27.34 Aligned_cols=34 Identities=15% Similarity=0.278 Sum_probs=30.1
Q ss_pred hhhhhHHHHHHHHHHHhhhchHHHHHhhhhhhhh
Q psy16474 34 ARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQ 67 (264)
Q Consensus 34 ~ke~~~~~~~~~~~~~~~~yh~~a~~~l~~~~~~ 67 (264)
-|-.++-.-+..+++.|..|+++.++.|+..+|+
T Consensus 203 ~k~~d~k~~l~~~~~~~i~~~~~~~~~We~~~~~ 236 (236)
T PF09325_consen 203 EKVKDFKSMLEEYAESQIEYQKKMLEAWETFLPE 236 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHccC
Confidence 3557888999999999999999999999998874
No 94
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=26.42 E-value=52 Score=21.02 Aligned_cols=18 Identities=39% Similarity=0.695 Sum_probs=14.0
Q ss_pred CCCCCCCchhhHhHHHHH
Q psy16474 11 HGRNPFDESEEEDTLATE 28 (264)
Q Consensus 11 ~~~~~~~~~~~~d~~~~~ 28 (264)
|-.|||-.+++|++|+.+
T Consensus 5 h~~nPYPs~~ek~~L~~~ 22 (40)
T PF05920_consen 5 HLHNPYPSKEEKEELAKQ 22 (40)
T ss_dssp TTTSGS--HHHHHHHHHH
T ss_pred HCCCCCCCHHHHHHHHHH
Confidence 678999999999999765
No 95
>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins. DLC1 shows in vitro GAP activity towards RhoA and CDC42. Beside its C-terminal GAP domain, DLC1 also contains a SAM (sterile alpha motif) and a START (StAR-related lipid transfer action) domain. DLC1 has tumor suppressor activity in cell culture. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=25.13 E-value=69 Score=28.08 Aligned_cols=33 Identities=27% Similarity=0.262 Sum_probs=29.6
Q ss_pred CCcccccHHHHHhhhCCcccchHHHHHHHhhhh
Q psy16474 78 KPMFCQPLEEHLALIGCKIAFPIELCTRALCQV 110 (264)
Q Consensus 78 ~~~~~~~l~~hl~~~g~~I~~~~~~C~~rl~~~ 110 (264)
+++||.+|+..+.+.|..|-.....|++.|...
T Consensus 2 ~~vFGvpL~~~~~r~g~~IP~~i~~~i~~L~~~ 34 (220)
T cd04375 2 KNVFGVPLLVNLQRTGQPLPRSIQQAMRWLRNN 34 (220)
T ss_pred CCEecCcHHHHHhhcCCCCChHHHHHHHHHHHh
Confidence 468999999999999999999999999988664
No 96
>PF15003 HAUS2: HAUS augmin-like complex subunit 2
Probab=24.55 E-value=1.1e+02 Score=28.14 Aligned_cols=26 Identities=8% Similarity=0.114 Sum_probs=21.2
Q ss_pred HHHHHhhhchHHHHHhhhhhhhhhhh
Q psy16474 45 DYVHMQKKQHEEALLHLNETLPQLNS 70 (264)
Q Consensus 45 ~~~~~~~~yh~~a~~~l~~~~~~l~~ 70 (264)
..+.+.+.||+.....|...+..|..
T Consensus 123 e~LPVEA~yHr~vVeLL~laa~fi~~ 148 (277)
T PF15003_consen 123 ENLPVEAQYHRYVVELLELAASFIEK 148 (277)
T ss_pred cCccchhhhhHHHHHHHHHHHHHHHH
Confidence 34788899999999999988877644
No 97
>KOG3046|consensus
Probab=24.08 E-value=3.8e+02 Score=22.25 Aligned_cols=93 Identities=11% Similarity=0.009 Sum_probs=68.0
Q ss_pred chhhHhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhchHHHHHhhhhhhhhhhhhh-ccCCCCCcc---cccHHHH-Hhhh
Q psy16474 18 ESEEEDTLATEMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQLNSLI-LVNPMKPMF---CQPLEEH-LALI 92 (264)
Q Consensus 18 ~~~~~d~~~~~~~~~~~ke~~~~~~~~~~~~~~~~yh~~a~~~l~~~~~~l~~~~-~~~~~~~~~---~~~l~~h-l~~~ 92 (264)
++..+|+....|-++..+=+++-..|.++--....+..++-+.|+-.|-.|+.-. .++..+..+ ..+++-- .=..
T Consensus 3 ~~~~~~q~~ekl~~l~~~le~~~e~~~~Lgl~vs~F~~tsq~~L~qrl~tLv~~L~~l~~~s~k~n~i~IPleVl~yIdd 82 (147)
T KOG3046|consen 3 NSTNNDQMQEKLAQLENSLEKFLENFRQLGLIVSNFQPTSQDALNQRLNTLVRGLQDLDKLSSKLNDIQIPLEVLEYIDD 82 (147)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCCcHHHHHHHHHHHHHHhhhhHHHHHhhccccCcHHHHHHHhc
Confidence 4567899999999999999999999999999889999999888888887776622 222222211 1233211 1267
Q ss_pred CCcccchHHHHHHHhhhh
Q psy16474 93 GCKIAFPIELCTRALCQV 110 (264)
Q Consensus 93 g~~I~~~~~~C~~rl~~~ 110 (264)
|+...++.+.|.++...+
T Consensus 83 GrNPd~ytke~le~~~~k 100 (147)
T KOG3046|consen 83 GRNPDLYTKEFLEKCLAK 100 (147)
T ss_pred CCCccHHHHHHHHHHHHh
Confidence 999999999999886554
No 98
>PF04316 FlgM: Anti-sigma-28 factor, FlgM; InterPro: IPR007412 FlgM binds and inhibits the activity of the transcription factor sigma 28. Inhibition of sigma 28 prevents the expression of genes from flagellar transcriptional class 3, which include genes for the filament and chemotaxis. Correctly assembled basal body-hook structures export FlgM, relieving inhibition of sigma 28 and allowing expression of class 3 genes. NMR studies show that free FlgM is mostly unfolded, which may facilitate its export. The C-terminal half of FlgM adopts a tertiary structure when it binds to sigma 28. All mutations in FlgM that prevent sigma 28 inhibition affect the C-terminal domain and is the region thought to constitute the binding domain. A minimal binding domain has been identified between Glu 64 and Arg 88 in Salmonella typhimurium (P26477 from SWISSPROT).The N-terminal portion remains unstructured and may be necessary for recognition by the export machinery [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0019861 flagellum; PDB: 1RP3_B 1SC5_B.
Probab=23.37 E-value=1.6e+02 Score=19.96 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=19.3
Q ss_pred CHHHHHHHHHHHhhccCCCCCcCCCCHHHHHHHH
Q psy16474 206 GASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVL 239 (264)
Q Consensus 206 ~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vaslL 239 (264)
+..+|.+||.+++.|.+. .|+..+|.-+
T Consensus 26 r~~kV~~ik~~I~~G~Y~------vd~~~iA~~m 53 (57)
T PF04316_consen 26 RAEKVAEIKAAIASGTYK------VDAEKIAEKM 53 (57)
T ss_dssp SHHHHHHHHHHHHTT-----------HHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCC------CCHHHHHHHH
Confidence 568999999999999653 4777777754
No 99
>cd07669 BAR_SNX33 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 33. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX33 interacts with Wiskott-Aldrich syndrome protein (WASP) and plays a role in the maintenance of cell shape and cell cycle progression. It modulates the shedding and endocytosis of cellular prion protein (PrP(c)) and amyloid precursor protein (APP). BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=22.35 E-value=2.2e+02 Score=25.05 Aligned_cols=43 Identities=26% Similarity=0.281 Sum_probs=38.2
Q ss_pred HHHHHHHHh-hhhhhHHHHHHHHHHHhhhchHHHHHhhhhhhhh
Q psy16474 25 LATEMYYII-ARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQ 67 (264)
Q Consensus 25 ~~~~~~~~~-~ke~~~~~~~~~~~~~~~~yh~~a~~~l~~~~~~ 67 (264)
+.|+|=||. .+..+|.+-+..+++-|..|+.+.-..|+..|+.
T Consensus 163 ~~AEm~HFh~~r~~d~k~~M~~yL~eQi~Fyq~v~~kle~al~~ 206 (207)
T cd07669 163 LQAEMNHFHQRRELDFKQMMQHYLRQQIIFYQRVSQQLEKTLRM 206 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 468999995 7899999999999999999999999999888753
No 100
>PF05983 Med7: MED7 protein; InterPro: IPR009244 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family consists of several eukaryotic proteins, which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multistep process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3FBI_C 3FBN_A 1YKH_A 1YKE_A.
Probab=22.19 E-value=2.3e+02 Score=23.68 Aligned_cols=68 Identities=10% Similarity=0.175 Sum_probs=44.2
Q ss_pred eeeecCCCCCCCCchhhHhHH---HHHHHHHhhhhhhH--HHHHHHHHHHhhhchHHHHHhhhhhhhhhhhhh
Q psy16474 5 VELVGGHGRNPFDESEEEDTL---ATEMYYIIARECEI--AQVIVDYVHMQKKQHEEALLHLNETLPQLNSLI 72 (264)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~d~~---~~~~~~~~~ke~~~--~~~~~~~~~~~~~yh~~a~~~l~~~~~~l~~~~ 72 (264)
+||+|.-+.||-+.+..=+.+ ..-|.|++.+=... -.-++.+.+.|.+-.+...+.+...|.++++++
T Consensus 89 leLl~~l~~~P~~~~~ki~~i~~L~~NmhhllNeyRPhQARetLi~~me~Ql~~kr~~i~~i~~~~~~~~~~l 161 (162)
T PF05983_consen 89 LELLDILSKNPSQYERKIEDIRLLFINMHHLLNEYRPHQARETLIMMMEEQLEEKREEIEEIRKVCEKAREVL 161 (162)
T ss_dssp HHHTTSS---CCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 578999999996555532322 44566666321111 123778899999999999999999998877654
No 101
>COG3647 Predicted membrane protein [Function unknown]
Probab=21.90 E-value=32 Score=29.35 Aligned_cols=9 Identities=67% Similarity=1.232 Sum_probs=7.7
Q ss_pred CCCCCCCCc
Q psy16474 10 GHGRNPFDE 18 (264)
Q Consensus 10 ~~~~~~~~~ 18 (264)
|-||||||.
T Consensus 97 g~~RN~fDr 105 (205)
T COG3647 97 GLSRNPFDR 105 (205)
T ss_pred ccccChhHH
Confidence 789999984
No 102
>PF03792 PBC: PBC domain; InterPro: IPR005542 Pbx proteins are members of the TALE (three-amino-acid loop extension) family of atypical homeodomain proteins, whose members are characterised by a three-residue insertion in the first helix of the homeodomain involved in their interaction with Hox proteins. Examination of Pbx1 has shown that, in addition to the homeodomain, a short 16-residue C-terminal tail is essential for maximal cooperative interactions with Hox partners as well as for maximal monomeric binding of Pbx1 to DNA. The PBX domain is a bipartite acidic domain [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=21.16 E-value=3.1e+02 Score=23.87 Aligned_cols=63 Identities=13% Similarity=0.146 Sum_probs=47.2
Q ss_pred eeecCCCCCCCCchhhHhHH-------HHHHHHHhhhhhhHHHHHHHHHHHhhhchHHHHHhhhhhhhhh
Q psy16474 6 ELVGGHGRNPFDESEEEDTL-------ATEMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQL 68 (264)
Q Consensus 6 ~~~~~~~~~~~~~~~~~d~~-------~~~~~~~~~ke~~~~~~~~~~~~~~~~yh~~a~~~l~~~~~~l 68 (264)
++.|+-.-|+.|.+.+|.+| -++|-.+-..=.+++....++++-|.+...=+..+++.++..|
T Consensus 94 ~~~~~~~~~~~d~~dYr~kL~~ir~~y~~el~kye~ac~eF~~hV~~lLreQs~~RPIs~keiE~m~~~i 163 (191)
T PF03792_consen 94 AAAGTAADNSIDHSDYRAKLSQIRQIYHSELEKYEQACNEFTEHVMNLLREQSEFRPISPKEIERMVNII 163 (191)
T ss_pred hhhccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhcccCCCCHHHHHHHHHHH
Confidence 44555557788887776665 4555556566667888889999999999988888888888766
No 103
>PF10552 ORF6C: ORF6C domain; InterPro: IPR018878 This entry represents the carboxy-terminal domain from ORF6 (Q9B012 from SWISSPROT), an antirepressor protein from Lactococcus phage bIL285 [].
Probab=20.55 E-value=43 Score=26.31 Aligned_cols=40 Identities=20% Similarity=0.447 Sum_probs=30.9
Q ss_pred CceeeecCCCCCCCCchhhHhHHHHHHHHHhhhhhhHHHH
Q psy16474 3 KSVELVGGHGRNPFDESEEEDTLATEMYYIIARECEIAQV 42 (264)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ke~~~~~~ 42 (264)
+.++++||++-+-+.+..-+-.+-.++|.-+.++-..+.|
T Consensus 48 rv~~~lgg~~s~ay~~~~~~~k~f~~i~~~lk~~F~V~sY 87 (116)
T PF10552_consen 48 RVYELLGGKGSPAYKDKSFRRKLFSDIYRDLKRHFGVPSY 87 (116)
T ss_pred HHHHHHhccccchhhhhHHhHHHHHHHHHHHHHHhCCchH
Confidence 4567899999888877677888999999888776655443
Done!