Query psy16474
Match_columns 264
No_of_seqs 252 out of 1311
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 22:15:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16474.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16474hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3byi_A RHO GTPase activating p 99.9 7E-26 2.4E-30 196.9 13.7 106 159-264 15-121 (214)
2 2osa_A N-chimaerin; RHO-GAP, G 99.9 6.2E-26 2.1E-30 195.6 12.0 104 160-263 5-110 (202)
3 3kuq_A RHO GTPase-activating p 99.9 1.1E-25 3.6E-30 197.8 12.0 105 158-263 15-119 (228)
4 1f7c_A Rhogap protein; GTPase 99.9 4.8E-26 1.7E-30 200.3 9.6 119 130-264 1-126 (231)
5 3iug_A RHO/CDC42/RAC GTPase-ac 99.9 1.8E-25 6.2E-30 196.3 13.2 105 159-264 17-123 (229)
6 1tx4_A P50-rhogap; complex (GT 99.9 4.8E-25 1.6E-29 189.5 12.4 104 158-263 3-109 (198)
7 3fk2_A Glucocorticoid receptor 99.9 4E-25 1.4E-29 196.2 11.7 107 157-264 47-153 (246)
8 2ee4_A RHO GTPase activating p 99.9 2.9E-25 9.8E-30 192.3 10.2 106 157-264 6-112 (209)
9 3msx_B RHO GTPase-activating p 99.9 9.1E-25 3.1E-29 187.9 11.6 102 158-263 7-108 (201)
10 1ow3_A RHO-GTPase-activating p 99.9 3.5E-24 1.2E-28 189.7 12.5 104 158-263 39-145 (242)
11 1pbw_A Rhogap domain, phosphat 99.9 1.4E-24 4.6E-29 189.2 6.3 102 160-263 4-107 (216)
12 2ovj_A Mgcracgap, RAC GTPase-a 99.9 1.3E-23 4.3E-28 181.2 9.4 98 165-263 3-101 (201)
13 3cxl_A N-chimerin; SH2, RHO-GA 99.9 1E-22 3.6E-27 195.5 12.0 104 160-263 266-371 (463)
14 2xs6_A Phosphatidylinositol 3- 99.9 1.7E-23 5.8E-28 182.4 5.7 96 158-263 17-114 (214)
15 3eap_A RHO GTPase-activating p 99.9 8.2E-23 2.8E-27 183.8 8.0 103 158-264 59-164 (271)
16 3qis_A Inositol polyphosphate 99.9 2.7E-21 9.1E-26 180.8 12.9 84 178-264 198-281 (366)
17 1zww_A SH3-containing GRB2-lik 97.7 4.2E-05 1.4E-09 67.5 6.3 61 19-79 191-251 (256)
18 2z0v_A SH3-containing GRB2-lik 97.6 7.6E-05 2.6E-09 65.3 6.6 61 19-79 175-235 (240)
19 1uru_A Amphiphysin; endocytosi 60.5 19 0.00064 30.1 6.5 47 23-69 187-234 (244)
20 3au4_A Myosin-X; protein-prote 55.0 2.4 8.2E-05 40.7 -0.2 75 35-109 120-195 (555)
21 2fic_A Bridging integrator 1; 50.6 32 0.0011 28.9 6.4 47 23-69 200-247 (251)
22 3pvl_A Myosin VIIA isoform 1; 46.7 11 0.00037 37.3 3.0 72 34-114 173-244 (655)
23 3a8p_A T-lymphoma invasion and 32.0 3.4 0.00012 36.0 -2.9 36 178-213 211-246 (263)
24 4akv_A Sorting nexin-33; trans 29.7 95 0.0033 28.2 6.4 44 26-69 340-384 (386)
25 1rp3_B Anti sigma factor FLGM; 28.0 83 0.0028 22.5 4.5 33 206-244 56-88 (88)
26 3llb_A Uncharacterized protein 24.8 45 0.0015 23.3 2.5 46 197-249 7-52 (83)
27 3iug_A RHO/CDC42/RAC GTPase-ac 23.7 60 0.002 27.0 3.5 34 77-110 18-51 (229)
28 3lae_A UPF0053 protein HI0107; 20.6 52 0.0018 22.8 2.1 46 197-249 7-52 (81)
29 2osa_A N-chimaerin; RHO-GAP, G 20.0 74 0.0025 25.9 3.3 35 75-109 3-37 (202)
No 1
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens}
Probab=99.93 E-value=7e-26 Score=196.88 Aligned_cols=106 Identities=26% Similarity=0.593 Sum_probs=95.7
Q ss_pred CCCCCCCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhcc-CCCCCcCCCCHHHHHH
Q psy16474 159 PMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHC-IKFEDALEYDAHVLAG 237 (264)
Q Consensus 159 ~~~~vFG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~-~~~~~~~~~D~h~vas 237 (264)
..+++||++|++++..++..||.+|.+|+++|+++|+++|||||++|+.++|++|+..+|+|. .++.+....|+|+||+
T Consensus 15 ~~~~vFG~~L~~~~~~~~~~vP~~v~~~i~~l~~~gl~~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~dvh~va~ 94 (214)
T 3byi_A 15 IKDQIFGSHLHKVCERENSTVPWFVKQCIEAVEKRGLDVDGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTG 94 (214)
T ss_dssp CCCCSTTSCHHHHHHHHTCSSCHHHHHHHHHHHHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCCCCTTSGGGCSHHHHHH
T ss_pred CcCCccCCcHHHHHHHcCCCCChHHHHHHHHHHHhCCCCCCccccCCCHHHHHHHHHHHhcCCCCCCCcccccchHHHHH
Confidence 467899999999999999999999999999999999999999999999999999999999985 3433222249999999
Q ss_pred HHHHHHhcCCCCCCChHhHHHHHHhhC
Q psy16474 238 VLKLYLRELPEPLLTYALYEDWLAAAR 264 (264)
Q Consensus 238 lLK~yLReLPePLit~~ly~~~i~a~k 264 (264)
+||.|||+||+||+|+++|+.|+++++
T Consensus 95 lLK~flreLPePLl~~~l~~~~~~~~~ 121 (214)
T 3byi_A 95 ALKMFFRELPEPLFPYSFFEQFVEAIK 121 (214)
T ss_dssp HHHHHHHHSSSCSSCHHHHHHHHHHHT
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999998763
No 2
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens}
Probab=99.93 E-value=6.2e-26 Score=195.59 Aligned_cols=104 Identities=28% Similarity=0.563 Sum_probs=93.0
Q ss_pred CCCCCCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhcc--CCCCCcCCCCHHHHHH
Q psy16474 160 MKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHC--IKFEDALEYDAHVLAG 237 (264)
Q Consensus 160 ~~~vFG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~--~~~~~~~~~D~h~vas 237 (264)
.+++||++|++++...+..+|.+|.+|+++|+++|+++|||||++|+.++|++|+..+|++. .++......|+|+||+
T Consensus 5 ~~~vFG~~L~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~d~~~~~~~d~~~va~ 84 (202)
T 2osa_A 5 VKKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITG 84 (202)
T ss_dssp --CCTTSCHHHHHHHHTCSSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHHHH
T ss_pred CCCccCCChHHHHHHcCCCCCcHHHHHHHHHHHhCCCcCCeeeecCcHHHHHHHHHHHHcCCCccCCCccccccHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999853 3443222359999999
Q ss_pred HHHHHHhcCCCCCCChHhHHHHHHhh
Q psy16474 238 VLKLYLRELPEPLLTYALYEDWLAAA 263 (264)
Q Consensus 238 lLK~yLReLPePLit~~ly~~~i~a~ 263 (264)
+||.|||+||+||+|+++|+.|++++
T Consensus 85 lLK~flreLpePLl~~~~~~~~~~~~ 110 (202)
T 2osa_A 85 ALKLYFRDLPIPLITYDAYPKFIESA 110 (202)
T ss_dssp HHHHHHHTCSSCSSCTTTHHHHHHHH
T ss_pred HHHHHHHhCCCccCCHHHHHHHHHHH
Confidence 99999999999999999999999875
No 3
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens}
Probab=99.93 E-value=1.1e-25 Score=197.80 Aligned_cols=105 Identities=29% Similarity=0.374 Sum_probs=95.5
Q ss_pred CCCCCCCCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHH
Q psy16474 158 NPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAG 237 (264)
Q Consensus 158 ~~~~~vFG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vas 237 (264)
...+++||+||+++++++|..||.+|.+|+++|+++|+.+|||||++|+.++|++|++.+|.+.... +...+|+|+||+
T Consensus 15 ~~~~~vFGv~L~~~~~~~~~~vP~~v~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~-~~~~~~~~~va~ 93 (228)
T 3kuq_A 15 YFQGSVFGVPLTVNVQRTGQPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQALRQMNEGAIDCV-NYEGQSAYDVAD 93 (228)
T ss_dssp BCTTSSTTCCHHHHHHHHSSSSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHTBSSSCC-CCTTCCHHHHHH
T ss_pred CCCCCEECCchHHHHHHcCCCCCHHHHHHHHHHHHhCCCcCCeeecCCCHHHHHHHHHHHhcCCCcC-CcccCCHHHHHH
Confidence 3467999999999999999999999999999999999999999999999999999999998764222 334579999999
Q ss_pred HHHHHHhcCCCCCCChHhHHHHHHhh
Q psy16474 238 VLKLYLRELPEPLLTYALYEDWLAAA 263 (264)
Q Consensus 238 lLK~yLReLPePLit~~ly~~~i~a~ 263 (264)
+||.|||+||+||+|+++|+.|++++
T Consensus 94 lLK~fLReLPePLl~~~l~~~~~~~~ 119 (228)
T 3kuq_A 94 MLKQYFRDLPEPLMTNKLSETFLQIY 119 (228)
T ss_dssp HHHHHHHHSSSCTTCSSHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999875
No 4
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1
Probab=99.93 E-value=4.8e-26 Score=200.33 Aligned_cols=119 Identities=26% Similarity=0.427 Sum_probs=75.9
Q ss_pred CHHHHHHHHHHHHhhhhchhhhhhhhhcCCCCCCCCCcHHHHHhhhC---CCCcHHHHHHHHHHHhcCCCCCCcccccCC
Q psy16474 130 SRDVIKQHEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEHLALIG---CKIAFPIELCTRALCQIGMDEEGLFRVTGG 206 (264)
Q Consensus 130 s~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~vFG~~L~~~l~~~~---~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~ 206 (264)
|+++++.|+++|++. .++||+||...+.++. ..+|.+|.+|+++|+++|+.+|||||++|+
T Consensus 1 ~e~~~~~W~~~m~~~----------------~pvfgvpl~~~~~~~~~l~~~~p~iv~~ci~~le~~gl~~eGIfR~sG~ 64 (231)
T 1f7c_A 1 SEEDRRLWMEAMDGR----------------EPVYNSNKDNQSEGTAQLDSIGFSIIKKCIHAVETRGINEQGLYRIVGV 64 (231)
T ss_dssp ----------------------------------------------CCSSHHHHHHHHHHHHHHHHHCTTCTTTTTSCCC
T ss_pred ChHHHHHHHHHcCCC----------------CCccCCcchhccccccccCCcCccHHHHHHHHHHHhCCCCCCeeeeCCc
Confidence 577889999987743 3699999998876543 247899999999999999999999999999
Q ss_pred HHHHHHHHH-HHhhcc---CCCCCcCCCCHHHHHHHHHHHHhcCCCCCCChHhHHHHHHhhC
Q psy16474 207 ASKVKRLKT-CLDAHC---IKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264 (264)
Q Consensus 207 ~~~v~~Lk~-~ld~~~---~~~~~~~~~D~h~vaslLK~yLReLPePLit~~ly~~~i~a~k 264 (264)
.++|++|++ .+|.+. +++.....+|+|+||++||.|||+||+||+|+++|+.|+++++
T Consensus 65 ~~~v~~l~~~~~d~~~~~~~~l~~~~~~dvh~va~lLK~flReLPePLl~~~ly~~~~~~~~ 126 (231)
T 1f7c_A 65 NSRVQKLLSILMDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSFIKAAK 126 (231)
T ss_dssp HHHHHHHHHHHHCC------CCCCCTTSCHHHHHHHHHHHHHTSSSCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcCCCcccCccccccccHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHh
Confidence 999999986 578763 3333333479999999999999999999999999999999864
No 5
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}
Probab=99.93 E-value=1.8e-25 Score=196.25 Aligned_cols=105 Identities=33% Similarity=0.601 Sum_probs=93.7
Q ss_pred CCCCCCCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccC-CCCC-cCCCCHHHHH
Q psy16474 159 PMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCI-KFED-ALEYDAHVLA 236 (264)
Q Consensus 159 ~~~~vFG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~-~~~~-~~~~D~h~va 236 (264)
..+++||++|++++..+|..||.+|.+|+++|+++|+ +|||||++|+.++|++|++.||.|.. ++.. ...+|+|+||
T Consensus 17 ~~~~vFG~~L~~~~~~~~~~vP~iv~~~i~~i~~~gl-~eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~~dvh~va 95 (229)
T 3iug_A 17 QGERVFGCDLGEHLLNSGFEVPQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQDIHSVG 95 (229)
T ss_dssp -CCCSTTSCHHHHHHHHCCSSCHHHHHHHHHHHHHCC-STTTTTSCCCHHHHHHHHHHHHTTCCCCTTSTTTTTCHHHHH
T ss_pred CCCCeECcchHHHHHhcCCCCCHHHHHHHHHHHHcCC-CCCCeecCCcHHHHHHHHHHHhcCCCCCccccccccchHHHH
Confidence 3678999999999999999999999999999999999 79999999999999999999999863 2221 1124999999
Q ss_pred HHHHHHHhcCCCCCCChHhHHHHHHhhC
Q psy16474 237 GVLKLYLRELPEPLLTYALYEDWLAAAR 264 (264)
Q Consensus 237 slLK~yLReLPePLit~~ly~~~i~a~k 264 (264)
++||.|||+||+||+|+++|+.|+++++
T Consensus 96 ~lLK~fLreLPePLl~~~ly~~~~~~~~ 123 (229)
T 3iug_A 96 SLCKLYFRELPNPLLTYQLYEKFSDAVS 123 (229)
T ss_dssp HHHHHHHHHCSSCTTCTTTHHHHHHHHT
T ss_pred HHHHHHHHHCCCCCcCHHHHHHHHHHHH
Confidence 9999999999999999999999998753
No 6
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B*
Probab=99.92 E-value=4.8e-25 Score=189.46 Aligned_cols=104 Identities=26% Similarity=0.329 Sum_probs=93.1
Q ss_pred CCCCCCCCCcHHHHHhhhCC--CCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCC-CHHH
Q psy16474 158 NPMKPMFCQPLEEHLALIGC--KIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEY-DAHV 234 (264)
Q Consensus 158 ~~~~~vFG~~L~~~l~~~~~--~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~-D~h~ 234 (264)
+.+.++||++|++++.+.+. .||.+|.+|+++|+++|+++|||||++|+.++|++|++.+|+|.. .+...+ |+|+
T Consensus 3 ~~~~~vFG~~L~~~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~--~~~~~~~d~~~ 80 (198)
T 1tx4_A 3 PLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLP--VDFDQYNALHL 80 (198)
T ss_dssp CCTTCCTTSCHHHHHHHSTTCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCC--CCGGGSSCTHH
T ss_pred CCCCCccCCcHHHHHhhCCCCCCCCHHHHHHHHHHHHhCCCCCCeeecCCcHHHHHHHHHHHhCCCC--CCccccccchH
Confidence 34678999999999988764 899999999999999999999999999999999999999999862 122233 8999
Q ss_pred HHHHHHHHHhcCCCCCCChHhHHHHHHhh
Q psy16474 235 LAGVLKLYLRELPEPLLTYALYEDWLAAA 263 (264)
Q Consensus 235 vaslLK~yLReLPePLit~~ly~~~i~a~ 263 (264)
+|++||.|||+||+||+|+++|+.|++++
T Consensus 81 ~a~lLK~flreLpePLi~~~l~~~~~~~~ 109 (198)
T 1tx4_A 81 PAVILKTFLRELPEPLLTFDLYPHVVGFL 109 (198)
T ss_dssp HHHHHHHHHHHSSSCTTCGGGHHHHHTGG
T ss_pred HHHHHHHHHHHCCCcCCCHHHHHHHHHHH
Confidence 99999999999999999999999999875
No 7
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens}
Probab=99.92 E-value=4e-25 Score=196.25 Aligned_cols=107 Identities=25% Similarity=0.432 Sum_probs=93.1
Q ss_pred cCCCCCCCCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHH
Q psy16474 157 VNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLA 236 (264)
Q Consensus 157 ~~~~~~vFG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~va 236 (264)
....+++||++|++++. .+..||.+|.+|+++|+++|+.+|||||++|+.++|++|++.||.|.........+|+|+||
T Consensus 47 ~~~~~~vFGv~L~~~~~-~~~~vP~iv~~~i~~l~~~gl~~eGIFR~sG~~~~v~~L~~~~d~~~~~~~~~~~~dvh~va 125 (246)
T 3fk2_A 47 ATWESNYFGVPLTTVVT-PEKPIPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQDHNLDLAEKDFTVNTVA 125 (246)
T ss_dssp --CCCSSTTSCGGGGCC-SSSCSCHHHHHHHHHHHHHCTTSTTTTTSCCCHHHHHHHHHHHHHCTTCCSGGGTCCHHHHH
T ss_pred cccCCCeeCCCHHHHhc-CCCCCChHHHHHHHHHHHhCCCCCCeeEeCCcHHHHHHHHHHHhcCCCCCcccccCcHHHHH
Confidence 34567899999999986 46689999999999999999999999999999999999999999985311122346999999
Q ss_pred HHHHHHHhcCCCCCCChHhHHHHHHhhC
Q psy16474 237 GVLKLYLRELPEPLLTYALYEDWLAAAR 264 (264)
Q Consensus 237 slLK~yLReLPePLit~~ly~~~i~a~k 264 (264)
++||.|||+||+||+|+++|+.|+++++
T Consensus 126 ~lLK~fLReLPePLl~~~l~~~~~~~~~ 153 (246)
T 3fk2_A 126 GAMKSFFSELPDPLVPYNMQIDLVEAHK 153 (246)
T ss_dssp HHHHHHHHHSSSCSSCHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCccCCHHHHHHHHHHhc
Confidence 9999999999999999999999999753
No 8
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A
Probab=99.92 E-value=2.9e-25 Score=192.35 Aligned_cols=106 Identities=26% Similarity=0.499 Sum_probs=93.3
Q ss_pred cCCCCCCCCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccC-CCCCcCCCCHHHH
Q psy16474 157 VNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCI-KFEDALEYDAHVL 235 (264)
Q Consensus 157 ~~~~~~vFG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~-~~~~~~~~D~h~v 235 (264)
....+++||++|++++.. +..||.+|.+|+++|+++|+.+|||||++|+.+++++|+..||+|.. ++. ...+|+|+|
T Consensus 6 ~~~~~~~FG~~L~~~~~~-~~~vP~iv~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~-~~~~d~~~v 83 (209)
T 2ee4_A 6 SGWESNYFGMPLQDLVTA-EKPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQFDQDHNINLV-SMEVTVNAV 83 (209)
T ss_dssp SSSCCSSSSSCHHHHSCS-SCCSCHHHHHHHHHHHHTCSCCTTTTTSCCCHHHHHHHHHHHHHCTTCCHH-HHTCCHHHH
T ss_pred CCCCCCeeCCcHHHHHhc-CCCCChHHHHHHHHHHHhCCCCCCccccCCCHHHHHHHHHHHhcCCCCCcc-cCCCCHHHH
Confidence 345678999999998764 56899999999999999999999999999999999999999999852 221 124699999
Q ss_pred HHHHHHHHhcCCCCCCChHhHHHHHHhhC
Q psy16474 236 AGVLKLYLRELPEPLLTYALYEDWLAAAR 264 (264)
Q Consensus 236 aslLK~yLReLPePLit~~ly~~~i~a~k 264 (264)
|++||.|||+||+||+|+++|+.|+++++
T Consensus 84 a~lLK~flreLPePLi~~~l~~~~~~~~~ 112 (209)
T 2ee4_A 84 AGALKAFFADLPDPLIPYSLHPELLEAAK 112 (209)
T ss_dssp HHHHHHHHHHSSSCSSCTTTHHHHHHHHS
T ss_pred HHHHHHHHHhCCCccCCHHHHHHHHHHHh
Confidence 99999999999999999999999998863
No 9
>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens}
Probab=99.92 E-value=9.1e-25 Score=187.89 Aligned_cols=102 Identities=23% Similarity=0.296 Sum_probs=90.6
Q ss_pred CCCCCCCCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHH
Q psy16474 158 NPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAG 237 (264)
Q Consensus 158 ~~~~~vFG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vas 237 (264)
+..+++||++|+++++.. .+|.+|.+|+++|+++|+.+|||||++|+.+.+++|++.+|.|.. .+...+|+|+||+
T Consensus 7 ~~~~~vFG~~L~~~~~~~--~vP~~v~~~i~~l~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~--~~~~~~d~~~va~ 82 (201)
T 3msx_B 7 PMPGQLFGISLPNICEND--NLPKPVLDMLFFLNQKGPLTKGIFRQSANVKSCRELKEKLNSGVE--VHLDCESIFVIAS 82 (201)
T ss_dssp ---CCCTTSCHHHHSGGG--CCCHHHHHHHHHHHHHGGGSTTTTTSCCCHHHHHHHHHHHHHTCC--CCTTSSCHHHHHH
T ss_pred CCCCCeeCCcHHHHhcCC--CCCHHHHHHHHHHHHhCCCCCCeeeeCCCHHHHHHHHHHhccCCC--CCCCcccHHHHHH
Confidence 346789999999998754 599999999999999999999999999999999999999999852 1334579999999
Q ss_pred HHHHHHhcCCCCCCChHhHHHHHHhh
Q psy16474 238 VLKLYLRELPEPLLTYALYEDWLAAA 263 (264)
Q Consensus 238 lLK~yLReLPePLit~~ly~~~i~a~ 263 (264)
+||.|||+||+||+|+++|+.|++++
T Consensus 83 lLK~flreLp~pLl~~~l~~~~~~~~ 108 (201)
T 3msx_B 83 VLKDFLRNIPGSIFSSDLYDHWVSVM 108 (201)
T ss_dssp HHHHHHHTSTTTTTTGGGHHHHHHGG
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999875
No 10
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B*
Probab=99.91 E-value=3.5e-24 Score=189.74 Aligned_cols=104 Identities=26% Similarity=0.338 Sum_probs=93.4
Q ss_pred CCCCCCCCCcHHHHHhhhCC--CCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCC-CHHH
Q psy16474 158 NPMKPMFCQPLEEHLALIGC--KIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEY-DAHV 234 (264)
Q Consensus 158 ~~~~~vFG~~L~~~l~~~~~--~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~-D~h~ 234 (264)
....++||++|++++.+.+. .||.+|.+|+++|+++|+++|||||++|+.++|++|++.||+|.. .+...+ |+|+
T Consensus 39 ~~~~~vFG~~L~~~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~--~~~~~~~dv~~ 116 (242)
T 1ow3_A 39 PLPNQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNMGLP--VDFDQYNELHL 116 (242)
T ss_dssp CCTTCCSSSCHHHHHHHSTTCCSSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCC--CCGGGSSCTHH
T ss_pred CCCCCccCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHcCCCCCceeeeCCcHHHHHHHHHHHhcCCC--CCcccccchHH
Confidence 34578999999999988764 899999999999999999999999999999999999999999852 122334 9999
Q ss_pred HHHHHHHHHhcCCCCCCChHhHHHHHHhh
Q psy16474 235 LAGVLKLYLRELPEPLLTYALYEDWLAAA 263 (264)
Q Consensus 235 vaslLK~yLReLPePLit~~ly~~~i~a~ 263 (264)
+|++||.|||+||+||+|+++|+.|++++
T Consensus 117 va~lLK~flReLPePLl~~~ly~~~~~~~ 145 (242)
T 1ow3_A 117 PAVILKTFLRELPEPLLTFDLYPHVVGFL 145 (242)
T ss_dssp HHHHHHHHHHHSSSCTTCGGGHHHHHTGG
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999875
No 11
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1
Probab=99.90 E-value=1.4e-24 Score=189.19 Aligned_cols=102 Identities=23% Similarity=0.289 Sum_probs=85.2
Q ss_pred CCCCCCCcHHHHHhhh--CCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHH
Q psy16474 160 MKPMFCQPLEEHLALI--GCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAG 237 (264)
Q Consensus 160 ~~~vFG~~L~~~l~~~--~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vas 237 (264)
+..+||++|++++.+. +..||.+|.+|+++|+++|+++|||||++|+.++ ++|++.||+|..++ +...+|+|+||+
T Consensus 4 d~~~fGv~L~~l~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~-~~l~~~~d~~~~~~-~~~~~dv~~va~ 81 (216)
T 1pbw_A 4 DVEQQALTLPDLAEQFAPPDIAPPLLIKLVEAIEKKGLECSTLYRTQSSSNL-AELRQLLDCDTPSV-DLEMIDVHVLAD 81 (216)
T ss_dssp --------CCCHHHHCCTTSCSCHHHHHHHHHHHHHHTTCTTTTSSCCSCCT-THHHHHSCSSSSCC-CGGGBCHHHHHH
T ss_pred ccccCCCcHHHHHhccCCCCCcCHHHHHHHHHHHHcCCCCCCeeeCCChHHH-HHHHHHHHcCCCCC-CccccCHHHHHH
Confidence 3468999999999864 5689999999999999999999999999999999 99999999975322 334579999999
Q ss_pred HHHHHHhcCCCCCCChHhHHHHHHhh
Q psy16474 238 VLKLYLRELPEPLLTYALYEDWLAAA 263 (264)
Q Consensus 238 lLK~yLReLPePLit~~ly~~~i~a~ 263 (264)
+||.|||+||+||+|+++|+.|++++
T Consensus 82 lLK~flReLPePLl~~~ly~~~~~~~ 107 (216)
T 1pbw_A 82 AFKRYLLDLPNPVIPAAVYSEMISLA 107 (216)
T ss_dssp HHHHHHHTSSSCSSCHHHHHHHHHHG
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999986
No 12
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens}
Probab=99.89 E-value=1.3e-23 Score=181.17 Aligned_cols=98 Identities=30% Similarity=0.409 Sum_probs=88.0
Q ss_pred CCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCC-CHHHHHHHHHHHH
Q psy16474 165 CQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEY-DAHVLAGVLKLYL 243 (264)
Q Consensus 165 G~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~-D~h~vaslLK~yL 243 (264)
|-+|++++..++..||.+|.+|+++|+++|+++|||||++|+.++|++|++.+|+|... .+...+ |+|+||++||.||
T Consensus 3 ~g~L~~~~~~~~~~vP~iv~~~i~~l~~~gl~~eGIfR~sG~~~~i~~L~~~~~~~~~~-~~~~~~~d~h~va~lLK~fl 81 (201)
T 2ovj_A 3 EGMLADFVSQTSPMIPSIVVHCVNEIEQRGLTETGLYRISGCDRTVKELKEKFLRVKTV-PLLSKVDDIHAICSLLKDFL 81 (201)
T ss_dssp CCCGGGGCCSSSSCCCHHHHHHHHHHHHHTTTSTTTTTSCCCHHHHHHHHHHHHTTCSC-CCGGGCCCHHHHHHHHHHHH
T ss_pred CCcHHHHhcccCCCCChHHHHHHHHHHHhCCCcCceeeeCCcHHHHHHHHHHHHcCCCC-ccccccCCHHHHHHHHHHHH
Confidence 34688888889999999999999999999999999999999999999999999998521 223345 9999999999999
Q ss_pred hcCCCCCCChHhHHHHHHhh
Q psy16474 244 RELPEPLLTYALYEDWLAAA 263 (264)
Q Consensus 244 ReLPePLit~~ly~~~i~a~ 263 (264)
|+||+||+|+++|+.|++++
T Consensus 82 reLpePLi~~~l~~~~~~~~ 101 (201)
T 2ovj_A 82 RNLKEPLLTFRLNRAFMEAA 101 (201)
T ss_dssp HTSSSCTTCTTTHHHHHHHH
T ss_pred HhCCCCCCCHHHHHHHHHHH
Confidence 99999999999999999875
No 13
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=99.88 E-value=1e-22 Score=195.49 Aligned_cols=104 Identities=28% Similarity=0.563 Sum_probs=94.0
Q ss_pred CCCCCCCcHHHHHhhhCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhcc--CCCCCcCCCCHHHHHH
Q psy16474 160 MKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHC--IKFEDALEYDAHVLAG 237 (264)
Q Consensus 160 ~~~vFG~~L~~~l~~~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~--~~~~~~~~~D~h~vas 237 (264)
.+++||++|+++++.++..||.+|..|+++|+++|+.+|||||++|+.+.|++|+..||.+. .++......|+|+||+
T Consensus 266 ~~~vFG~~L~~~~~~~~~~vP~iv~~~i~~le~~gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~~~~~~~~~~dv~~va~ 345 (463)
T 3cxl_A 266 VKKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFDRDGEKADISVNMYEDINIITG 345 (463)
T ss_dssp CCCCTTSCHHHHHHHHTCSSCHHHHHHHHHHHHHCSCSTTTTTSCCCHHHHHHHHHHHHHHGGGCCCSTTTCCCHHHHHH
T ss_pred cccccccccchhhhccCCCCCeeHHHHHHHHHhcCCCCCceeEecCCHHHHHHHHHHHHhcCCcCCcccccCCCcchhhh
Confidence 46899999999999999999999999999999999999999999999999999999999853 3333222349999999
Q ss_pred HHHHHHhcCCCCCCChHhHHHHHHhh
Q psy16474 238 VLKLYLRELPEPLLTYALYEDWLAAA 263 (264)
Q Consensus 238 lLK~yLReLPePLit~~ly~~~i~a~ 263 (264)
+||.|||+||+||||+++|+.|++++
T Consensus 346 lLK~flReLPePLi~~~ly~~~~~~~ 371 (463)
T 3cxl_A 346 ALKLYFRDLPIPLITYDAYPKFIESA 371 (463)
T ss_dssp HHHHHHHHCSSCSSCTTTHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999975
No 14
>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens}
Probab=99.88 E-value=1.7e-23 Score=182.44 Aligned_cols=96 Identities=23% Similarity=0.166 Sum_probs=76.0
Q ss_pred CCCCCCCCCcHHHHHhh--hCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHH
Q psy16474 158 NPMKPMFCQPLEEHLAL--IGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVL 235 (264)
Q Consensus 158 ~~~~~vFG~~L~~~l~~--~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~v 235 (264)
+...++||++|+++++. .+..||.+|.+|+++|+++|+.+|||||++|+. ||+ |.+. .+...+|+|+|
T Consensus 17 n~~~~vFGv~L~~l~~~~~~~~~vP~iv~~~i~~l~~~Gl~~eGIfR~sG~~-----lr~--~~~~---~dl~~~dvh~v 86 (214)
T 2xs6_A 17 NLYFQSMGLTLPDLPEQFSPPDVAPPLLVKLVEAIERTGLDSESHYRPELPA-----PRT--DWSL---SDVDQWDTAAL 86 (214)
T ss_dssp --------CCCCCHHHHCCTTCCSCHHHHHHHHHHHHHCTTCSGGGCCSCCC-----CCC--CCCC---TTGGGCCHHHH
T ss_pred CCCCcccCcCHHHHHHhhCCCCCCCHHHHHHHHHHHHhCCCCCCCeeeCHHH-----HHh--cccc---CCCccCCHHHH
Confidence 44568999999999984 456799999999999999999999999999998 433 2222 23335799999
Q ss_pred HHHHHHHHhcCCCCCCChHhHHHHHHhh
Q psy16474 236 AGVLKLYLRELPEPLLTYALYEDWLAAA 263 (264)
Q Consensus 236 aslLK~yLReLPePLit~~ly~~~i~a~ 263 (264)
|++||.|||+||+||+|+++|+.|++++
T Consensus 87 a~lLK~flReLPePLi~~~ly~~~i~~~ 114 (214)
T 2xs6_A 87 ADGIKSFLLALPAPLVTPEASAEARRAL 114 (214)
T ss_dssp HHHHHHHHHHSSSCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999986
No 15
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens}
Probab=99.87 E-value=8.2e-23 Score=183.83 Aligned_cols=103 Identities=28% Similarity=0.305 Sum_probs=80.1
Q ss_pred CCCCCCCCCcHHHHHhh---hCCCCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHH
Q psy16474 158 NPMKPMFCQPLEEHLAL---IGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHV 234 (264)
Q Consensus 158 ~~~~~vFG~~L~~~l~~---~~~~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~ 234 (264)
..++++||++|++++.. .+..||.+|.+|+.+|++ |+.+|||||++|+.+.|++|++.||.|... ....|+|+
T Consensus 59 ~~~~~vFGv~L~~l~~~~~~~~~~iP~~l~~~~~~le~-gl~~eGIfR~sG~~~~i~~L~~~~d~~~~~---~~~~~~~~ 134 (271)
T 3eap_A 59 EIGGKIFGVPFNALPHSAVPEYGHIPSFLVDACTSLED-HIHTEGLFRKSGSVIRLKALKNKVDHGEGC---LSSAPPCD 134 (271)
T ss_dssp --CCSSTTSCGGGSCEEEETTTEEEEHHHHHHHHHHGG-GTTC--------CHHHHHHHHHHHHHC--------CCCHHH
T ss_pred CCCCCeeCCcHHHHHhhccCCCCCcChHHHHHHHHHHh-CCCCCCeeeeCCCHHHHHHHHHHHHcCCCC---cccccHHH
Confidence 34678999999998764 345699999999999985 799999999999999999999999998643 23569999
Q ss_pred HHHHHHHHHhcCCCCCCChHhHHHHHHhhC
Q psy16474 235 LAGVLKLYLRELPEPLLTYALYEDWLAAAR 264 (264)
Q Consensus 235 vaslLK~yLReLPePLit~~ly~~~i~a~k 264 (264)
||++||.|||+||+||+|+++|+.|+++++
T Consensus 135 va~lLK~fLReLPePLl~~~ly~~~~~~~~ 164 (271)
T 3eap_A 135 IAGLLKQFFRELPEPILPADLHEALLKAQQ 164 (271)
T ss_dssp HHHHHHHHHHHSSSCSSCGGGHHHHHHHTT
T ss_pred HHHHHHHHHHhCCcccCCHHHHHHHHHHHH
Confidence 999999999999999999999999999763
No 16
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A
Probab=99.85 E-value=2.7e-21 Score=180.81 Aligned_cols=84 Identities=27% Similarity=0.499 Sum_probs=77.3
Q ss_pred CCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHHHHHHHHhcCCCCCCChHhHH
Q psy16474 178 KIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYE 257 (264)
Q Consensus 178 ~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vaslLK~yLReLPePLit~~ly~ 257 (264)
.||.+|.+|+++|+++|+.+|||||++|+.+++++|++.+|.|... + ...|+|++|++||.|||+||+||+|+++|+
T Consensus 198 ~iP~~v~~~i~~l~~~Gl~~eGIFR~~G~~~~v~~L~~~~d~~~~~--~-~~~dvh~va~lLK~fLReLPePLi~~~ly~ 274 (366)
T 3qis_A 198 QVPKEIWLLVDHLFKYACHQEDLFQTPGMQEELQQIIDCLDTSIPE--T-IPGSNHSVAEALLIFLEALPEPVICYELYQ 274 (366)
T ss_dssp SSCHHHHHHHHHHHHHCTTCTTTTTSCCCHHHHHHHHHHHHHCCCS--S-CCSCHHHHHHHHHHHHHHCSSCSSCHHHHH
T ss_pred CcChHHHHHHHHHHhcCCCCCCeEeCCCCHHHHHHHHHHHcCCCCC--c-cccCHHHHHHHHHHHHHhCCCCCCcHHHHH
Confidence 6899999999999999999999999999999999999999998642 1 134999999999999999999999999999
Q ss_pred HHHHhhC
Q psy16474 258 DWLAAAR 264 (264)
Q Consensus 258 ~~i~a~k 264 (264)
.|+++++
T Consensus 275 ~~~~~~~ 281 (366)
T 3qis_A 275 RCLDSAY 281 (366)
T ss_dssp HHHHHTT
T ss_pred HHHHHhh
Confidence 9999864
No 17
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A
Probab=97.73 E-value=4.2e-05 Score=67.52 Aligned_cols=61 Identities=18% Similarity=0.290 Sum_probs=53.7
Q ss_pred hhhHhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhchHHHHHhhhhhhhhhhhhhccCCCCC
Q psy16474 19 SEEEDTLATEMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQLNSLILVNPMKP 79 (264)
Q Consensus 19 ~~~~d~~~~~~~~~~~ke~~~~~~~~~~~~~~~~yh~~a~~~l~~~~~~l~~~~~~~~~~~ 79 (264)
++++|.+.++|++|+++|.++..++..++..|.+||+++...|+...+.|.+.+...+..|
T Consensus 191 e~~~e~~~~~m~~l~~~e~e~~~~L~~~v~aQl~y~~~~~e~L~~l~~~l~~~~~~~~~~p 251 (256)
T 1zww_A 191 DESKEIAESSMFNLLEMDIEQVSQLSALVQAQLEYHKQAVQILQQVTVRLEERIRQASSQP 251 (256)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 4588999999999999999999999999999999999999999999999999988887766
No 18
>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens}
Probab=97.64 E-value=7.6e-05 Score=65.26 Aligned_cols=61 Identities=15% Similarity=0.237 Sum_probs=57.5
Q ss_pred hhhHhHHHHHHHHHhhhhhhHHHHHHHHHHHhhhchHHHHHhhhhhhhhhhhhhccCCCCC
Q psy16474 19 SEEEDTLATEMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQLNSLILVNPMKP 79 (264)
Q Consensus 19 ~~~~d~~~~~~~~~~~ke~~~~~~~~~~~~~~~~yh~~a~~~l~~~~~~l~~~~~~~~~~~ 79 (264)
+++++.+..+|+++++.|.++...+.++++.|.+||+++.+.|+...+.|.+.+...+.+|
T Consensus 175 e~~~e~~~~~m~~~~~~~~e~l~~l~~~v~aQl~y~~~~~e~L~~l~~~l~~~~~~~~~~p 235 (240)
T 2z0v_A 175 EESKELAERSMFNFLENDVEQVSQLAVFIEAALDYHRQSTEILQELQSKLQMRISAASSVP 235 (240)
T ss_dssp HHHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4688999999999999999999999999999999999999999999999999988888777
No 19
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=60.48 E-value=19 Score=30.07 Aligned_cols=47 Identities=13% Similarity=0.077 Sum_probs=36.1
Q ss_pred hHHHHHHHHHhh-hhhhHHHHHHHHHHHhhhchHHHHHhhhhhhhhhh
Q psy16474 23 DTLATEMYYIIA-RECEIAQVIVDYVHMQKKQHEEALLHLNETLPQLN 69 (264)
Q Consensus 23 d~~~~~~~~~~~-ke~~~~~~~~~~~~~~~~yh~~a~~~l~~~~~~l~ 69 (264)
++|..+|-.|.. +-..+...+..++.+|..||+++...|+...+.+.
T Consensus 187 ~~L~~eLp~l~~~~~~~~~~~l~~fv~~q~~~~~~~~~~~~~l~~~~~ 234 (244)
T 1uru_A 187 TELHDELPALYDSRILFLVTNLQTLFATEQVFHNETAKIYSELEAIVD 234 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456779999985 44557889999999999999999777766544443
No 20
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=55.02 E-value=2.4 Score=40.74 Aligned_cols=75 Identities=9% Similarity=-0.041 Sum_probs=46.1
Q ss_pred hhhhHHHHHHHHHHHhhhchHHHHHhhhhhhhhhhhhhccCCCCCcccccHHHHHhh-hCCcccchHHHHHHHhhh
Q psy16474 35 RECEIAQVIVDYVHMQKKQHEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEHLAL-IGCKIAFPIELCTRALCQ 109 (264)
Q Consensus 35 ke~~~~~~~~~~~~~~~~yh~~a~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~hl~~-~g~~I~~~~~~C~~rl~~ 109 (264)
+++-|||.++|+..+-.+.......+|++.---.-.+.++....+++..||..+... .+-+++-++..|.++|..
T Consensus 120 rdEiy~Ql~kQ~t~n~~~~s~~~~r~W~Ll~~~~~~f~Ps~~~~~~l~~~l~~~~~~~~~~~~~~~a~~c~~~L~r 195 (555)
T 3au4_A 120 RDELYCQLIKQTNKVPHPGSVGNLYSWQILTCLSCTFLPSRGILKYLKFHLKRIREQFPGTEMEKYALFTYESLKK 195 (555)
T ss_dssp HHHHHHHHHHHTSSCSSTTCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHh
Confidence 567899999999988666554445666655422222444333334444444444422 255677889999998876
No 21
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=50.56 E-value=32 Score=28.92 Aligned_cols=47 Identities=11% Similarity=0.030 Sum_probs=37.4
Q ss_pred hHHHHHHHHHhhhhhhH-HHHHHHHHHHhhhchHHHHHhhhhhhhhhh
Q psy16474 23 DTLATEMYYIIARECEI-AQVIVDYVHMQKKQHEEALLHLNETLPQLN 69 (264)
Q Consensus 23 d~~~~~~~~~~~ke~~~-~~~~~~~~~~~~~yh~~a~~~l~~~~~~l~ 69 (264)
++|..+|-.|......+ ...+..++.+|..||+++...|+...+.|.
T Consensus 200 ~~L~~eLp~l~~~~~~~~~~~l~~f~~~Q~~f~~~~~~~~~~L~~~l~ 247 (251)
T 2fic_A 200 VDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNLNDVLV 247 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45568888888666555 668999999999999999888887766654
No 22
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=46.68 E-value=11 Score=37.28 Aligned_cols=72 Identities=11% Similarity=-0.034 Sum_probs=49.0
Q ss_pred hhhhhHHHHHHHHHHHhhhchHHHHHhhhhhhhhhhhhhccCCCCCcccccHHHHHhhhCCcccchHHHHHHHhhhhhhc
Q psy16474 34 ARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQVRRL 113 (264)
Q Consensus 34 ~ke~~~~~~~~~~~~~~~~yh~~a~~~l~~~~~~l~~~~~~~~~~~~~~~~l~~hl~~~g~~I~~~~~~C~~rl~~~~r~ 113 (264)
=+++-|||.++|+..+ +.......+|++..--+--+.++. .+..+|..|+... -+-++..|.++|....+.
T Consensus 173 LrDEiycQl~kQ~t~n--p~~~s~~rgW~Ll~l~~~~f~Ps~----~~~~yl~~~l~~~---~~~~a~~c~~~L~rt~~~ 243 (655)
T 3pvl_A 173 LRDEIYCQISKQLTHN--PSKSSYARGWILVSLCVGCFAPSE----KFVKYLRNFIHGG---PPGYAPYCEERLRRTFVN 243 (655)
T ss_dssp GHHHHHHHHHHHTSSC--CCHHHHHHHHHHHHHHHHHCCCCT----TTHHHHHHHHHTS---CTTTHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhcC--CChHHHHHHHHHHHHHHhhcCCcH----HHHHHHHHHHHcC---cHHHHHHHHHHHHHhhcC
Confidence 4677899999999988 444566777777654444444444 4555666777652 237899999999877544
Q ss_pred C
Q psy16474 114 G 114 (264)
Q Consensus 114 ~ 114 (264)
|
T Consensus 244 g 244 (655)
T 3pvl_A 244 G 244 (655)
T ss_dssp C
T ss_pred C
Confidence 4
No 23
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A
Probab=31.99 E-value=3.4 Score=35.98 Aligned_cols=36 Identities=11% Similarity=0.047 Sum_probs=29.2
Q ss_pred CCcHHHHHHHHHHHhcCCCCCCcccccCCHHHHHHH
Q psy16474 178 KIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRL 213 (264)
Q Consensus 178 ~iP~vv~~ci~~L~~~Gl~~eGIFR~~G~~~~v~~L 213 (264)
+.|..+..|+.-....++...||||++|...-|-..
T Consensus 211 ~~~~~l~~~~~~~~~~~l~~~g~~~v~~~~~~v~~~ 246 (263)
T 3a8p_A 211 PNPKSLLAATSRPSKLALGRLGVLSVSSFHALVCSR 246 (263)
T ss_dssp CCHHHHHTTCCHHHHHHHHHHTCCSHHHHHHHHHHT
T ss_pred cchHHHHHHhcccccccccccEEEEeccceeeeeec
Confidence 455889889887888899999999999988755444
No 24
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=29.75 E-value=95 Score=28.22 Aligned_cols=44 Identities=20% Similarity=0.246 Sum_probs=38.2
Q ss_pred HHHHHHHh-hhhhhHHHHHHHHHHHhhhchHHHHHhhhhhhhhhh
Q psy16474 26 ATEMYYII-ARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQLN 69 (264)
Q Consensus 26 ~~~~~~~~-~ke~~~~~~~~~~~~~~~~yh~~a~~~l~~~~~~l~ 69 (264)
-++|=+|= .|-.++...++.+++.|..||++.++.|+..++...
T Consensus 340 ~~El~rF~~~Rv~Dfk~~l~eyle~qi~~~~~~~~~le~~l~~f~ 384 (386)
T 4akv_A 340 QAEMNHFHQRRELDFKHMMQNYLRQQILFYQRVGQQLEKTLRMYD 384 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 56677774 567899999999999999999999999999998764
No 25
>1rp3_B Anti sigma factor FLGM; transcription; 2.30A {Aquifex aeolicus} SCOP: a.137.11.1 PDB: 1sc5_B
Probab=27.98 E-value=83 Score=22.48 Aligned_cols=33 Identities=21% Similarity=0.155 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHhhccCCCCCcCCCCHHHHHHHHHHHHh
Q psy16474 206 GASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLR 244 (264)
Q Consensus 206 ~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vaslLK~yLR 244 (264)
+..+|.+||.++..|.+ ..|+..||.-|-.||+
T Consensus 56 r~~kV~~iK~aI~~GtY------~vd~~~iA~kml~~~~ 88 (88)
T 1rp3_B 56 LEKKVKELKEKIEKGEY------EVSDEKVVKGLIEFFT 88 (88)
T ss_dssp HHHHHHHHHHHHHTTCC------CCCHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHcCCC------CCCHHHHHHHHHHHhC
Confidence 56799999999999964 3488888886666654
No 26
>3llb_A Uncharacterized protein; protein PA3983, unknown function, structural genomics, PSI2, MCSG, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: d.145.1.0
Probab=24.81 E-value=45 Score=23.27 Aligned_cols=46 Identities=17% Similarity=0.324 Sum_probs=34.1
Q ss_pred CCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHHHHHHHHhcCCCC
Q psy16474 197 EEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEP 249 (264)
Q Consensus 197 ~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vaslLK~yLReLPeP 249 (264)
.+|-|.+.|... +..+.+.++.. +. ..+..++++++-.-|..+|+.
T Consensus 7 ~dg~~~v~G~~~-l~dl~~~l~~~---l~---~~~~~Tl~G~i~~~lg~iP~~ 52 (83)
T 3llb_A 7 PSGDFIVKALTP-VDAFNDFFGSE---FS---DEEFDTVGGLVMSAFGHLPKR 52 (83)
T ss_dssp TTSCEEEETTCB-HHHHHHHHCCC---CC---TTTCSBHHHHHHHHHSSCCCT
T ss_pred CCCEEEEEccCC-HHHHHHHhCCC---CC---CCCCcCHHHHHHHHhCcCCCC
Confidence 478999999875 66777766542 22 235679999999999999864
No 27
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}
Probab=23.72 E-value=60 Score=27.03 Aligned_cols=34 Identities=24% Similarity=0.303 Sum_probs=30.6
Q ss_pred CCCcccccHHHHHhhhCCcccchHHHHHHHhhhh
Q psy16474 77 MKPMFCQPLEEHLALIGCKIAFPIELCTRALCQV 110 (264)
Q Consensus 77 ~~~~~~~~l~~hl~~~g~~I~~~~~~C~~rl~~~ 110 (264)
.+++||..|++++...|.+|-.....|+..+...
T Consensus 18 ~~~vFG~~L~~~~~~~~~~vP~iv~~~i~~i~~~ 51 (229)
T 3iug_A 18 GERVFGCDLGEHLLNSGFEVPQVLQSCTAFIERY 51 (229)
T ss_dssp CCCSTTSCHHHHHHHHCCSSCHHHHHHHHHHHHH
T ss_pred CCCeECcchHHHHHhcCCCCCHHHHHHHHHHHHc
Confidence 4679999999999999999999999999988664
No 28
>3lae_A UPF0053 protein HI0107; APC85784.2, conserved protein, haemophilus influenzae RD KW20, structural genomics, PSI-2; HET: MSE; 1.45A {Haemophilus influenzae} SCOP: d.145.1.4 PDB: 2o1r_A*
Probab=20.57 E-value=52 Score=22.81 Aligned_cols=46 Identities=22% Similarity=0.473 Sum_probs=33.5
Q ss_pred CCCcccccCCHHHHHHHHHHHhhccCCCCCcCCCCHHHHHHHHHHHHhcCCCC
Q psy16474 197 EEGLFRVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEP 249 (264)
Q Consensus 197 ~eGIFR~~G~~~~v~~Lk~~ld~~~~~~~~~~~~D~h~vaslLK~yLReLPeP 249 (264)
.+|-|.+.|... +..+.+.++.. +. ..+..++++++-..|..+|++
T Consensus 7 ~dg~~~v~g~~~-l~dl~~~l~~~---l~---~~~~~Tl~G~i~~~lg~iP~~ 52 (81)
T 3lae_A 7 SDGSMIIDGSAN-LRDLNKMFNWE---LD---TEDARTFNGLILEHLEEIPDE 52 (81)
T ss_dssp TTSCEEEETTCB-HHHHHHHHCCC---CC---CSSCSBHHHHHHHHCSSCCCT
T ss_pred CCCEEEEEeeCC-HHHHHHHhCCC---CC---CCCCccHHHHHHHHhCCCCCC
Confidence 478899999764 66776666542 22 235679999999999888864
No 29
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens}
Probab=20.04 E-value=74 Score=25.85 Aligned_cols=35 Identities=14% Similarity=0.297 Sum_probs=27.9
Q ss_pred CCCCCcccccHHHHHhhhCCcccchHHHHHHHhhh
Q psy16474 75 NPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQ 109 (264)
Q Consensus 75 ~~~~~~~~~~l~~hl~~~g~~I~~~~~~C~~rl~~ 109 (264)
+..+++||..|++.....|..|-.....|+..+..
T Consensus 3 k~~~~vFG~~L~~~~~~~~~~vP~iv~~~i~~l~~ 37 (202)
T 2osa_A 3 KHVKKVYSCDLTTLVKAHTTKRPMVVDMCIREIES 37 (202)
T ss_dssp ----CCTTSCHHHHHHHHTCSSCHHHHHHHHHHHH
T ss_pred CCCCCccCCChHHHHHHcCCCCCcHHHHHHHHHHH
Confidence 45578999999999999999998888999988754
Done!