RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16474
(264 letters)
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics,
structural genomics consortium, SGC, signaling protein;
1.80A {Homo sapiens}
Length = 202
Score = 121 bits (306), Expect = 4e-34
Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 2/108 (1%)
Query: 159 PMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLD 218
+K ++ L + K +++C R + G++ EGL+RV+G + ++ +K D
Sbjct: 4 HVKKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAFD 63
Query: 219 --AHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
+ D +++ G LKLY R+LP PL+TY Y ++ +A+
Sbjct: 64 RDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAK 111
Score = 29.5 bits (67), Expect = 0.80
Identities = 5/32 (15%), Positives = 13/32 (40%)
Query: 76 PMKPMFCQPLEEHLALIGCKIAFPIELCTRAL 107
+K ++ L + K +++C R +
Sbjct: 4 HVKKVYSCDLTTLVKAHTTKRPMVVDMCIREI 35
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium,
GTPase activation, SGC, alternative splicing, cytoplasm,
phosphoprotein; 2.30A {Homo sapiens}
Length = 228
Score = 121 bits (305), Expect = 9e-34
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 1/104 (0%)
Query: 161 KPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAH 220
+F PL ++ G + I+ R L +D+ GLFR +G S+++ L+ +
Sbjct: 18 GSVFGVPLTVNVQRTGQPLPQSIQQAMRYLRNHCLDQVGLFRKSGVKSRIQALRQMNEGA 77
Query: 221 CIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
A+ +A +LK Y R+LPEPL+T L E +L +
Sbjct: 78 IDCVNYE-GQSAYDVADMLKQYFRDLPEPLMTNKLSETFLQIYQ 120
Score = 30.4 bits (69), Expect = 0.47
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 78 KPMFCQPLEEHLALIGCKIAFPIELCTRAL 107
+F PL ++ G + I+ R L
Sbjct: 18 GSVFGVPLTVNVQRTGQPLPQSIQQAMRYL 47
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein,
GTPase-activating protein for RHO family members,
structural genomics, NPPSFA; NMR {Homo sapiens} PDB:
2ee5_A
Length = 209
Score = 120 bits (303), Expect = 1e-33
Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 1/107 (0%)
Query: 158 NPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCL 217
F PL+ L I +E C + G+ EGL+RV+G + ++
Sbjct: 7 GWESNYFGMPLQ-DLVTAEKPIPLFVEKCVEFIEDTGLCTEGLYRVSGNKTDQDNIQKQF 65
Query: 218 DAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
D ++E + +AG LK + +LP+PL+ Y+L+ + L AA+
Sbjct: 66 DQDHNINLVSMEVTVNAVAGALKAFFADLPDPLIPYSLHPELLEAAK 112
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics
consortium (SGC), GAP, alternative splicing, cell
junction, cell membrane; 1.77A {Homo sapiens}
Length = 229
Score = 119 bits (300), Expect = 5e-33
Identities = 35/108 (32%), Positives = 59/108 (54%), Gaps = 3/108 (2%)
Query: 159 PMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLD 218
+ +F L EHL G ++ ++ CT + + G+ +G++R++G AS ++RL+ D
Sbjct: 17 QGERVFGCDLGEHLLNSGFEVPQVLQSCTAFIERYGI-VDGIYRLSGVASNIQRLRHEFD 75
Query: 219 AHCIKF--EDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
+ + ++ D H + + KLY RELP PLLTY LYE + A
Sbjct: 76 SEHVPDLTKEPYVQDIHSVGSLCKLYFRELPNPLLTYQLYEKFSDAVS 123
Score = 33.1 bits (76), Expect = 0.064
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 76 PMKPMFCQPLEEHLALIGCKIAFPIELCTRAL 107
+ +F L EHL G ++ ++ CT +
Sbjct: 17 QGERVFGCDLGEHLLNSGFEVPQVLQSCTAFI 48
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural
genomics consortium, signaling protein; 2.25A {Homo
sapiens}
Length = 214
Score = 118 bits (297), Expect = 8e-33
Identities = 32/118 (27%), Positives = 65/118 (55%), Gaps = 2/118 (1%)
Query: 149 PQLNSLILVNPMK-PMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGA 207
P L +L +K +F L + + + ++ C A+ + G+D +G++RV+G
Sbjct: 4 PSLKTLQEKGLIKDQIFGSHLHKVCERENSTVPWFVKQCIEAVEKRGLDVDGIYRVSGNL 63
Query: 208 SKVKRLKTCLDA-HCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
+ +++L+ ++ + +D+ D HV+ G LK++ RELPEPL Y+ +E ++ A +
Sbjct: 64 ATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEPLFPYSFFEQFVEAIK 121
Score = 27.2 bits (61), Expect = 5.0
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 66 PQLNSLILVNPMK-PMFCQPLEEHLALIGCKIAFPIELCTRAL 107
P L +L +K +F L + + + ++ C A+
Sbjct: 4 PSLKTLQEKGLIKDQIFGSHLHKVCERENSTVPWFVKQCIEAV 46
>3msx_B RHO GTPase-activating protein 20; protein-proten complex,
transition state, protein BI; HET: GDP; 1.65A {Homo
sapiens}
Length = 201
Score = 115 bits (290), Expect = 8e-32
Identities = 23/105 (21%), Positives = 42/105 (40%), Gaps = 6/105 (5%)
Query: 161 KPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDA- 219
+F L + P+ L Q G +G+FR + + LK L++
Sbjct: 10 GQLFGISLPNICE--NDNLPKPVLDMLFFLNQKGPLTKGIFRQSANVKSCRELKEKLNSG 67
Query: 220 HCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
+ + V+A VLK +LR +P + + LY+ W++
Sbjct: 68 VEVHLDC---ESIFVIASVLKDFLRNIPGSIFSSDLYDHWVSVMD 109
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH
domain, signaling protein; 2.40A {Gallus gallus} SCOP:
a.116.1.1
Length = 231
Score = 115 bits (291), Expect = 9e-32
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Query: 161 KPMFCQPLEEHLALIGCKIAFP---IELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCL 217
+P++ + + I+ C A+ G++E+GL+R+ G S+V++L + L
Sbjct: 16 EPVYNSNKDNQSEGTAQLDSIGFSIIKKCIHAVETRGINEQGLYRIVGVNSRVQKLLSIL 75
Query: 218 D----AHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
A + E E++ + LK YLR LP PL+ Y ++ AA+
Sbjct: 76 MDPKTATETETEICAEWEIKTITSALKTYLRMLPGPLMMYQFQRSFIKAAK 126
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics
consortium, GTPase-activating protein, SGC, alternative
splicing, anti-oncogene; 2.80A {Homo sapiens}
Length = 246
Score = 115 bits (290), Expect = 2e-31
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 1/104 (0%)
Query: 161 KPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAH 220
F PL + I IE C + G+ EG++RV+G S+++ L+ D
Sbjct: 51 SNYFGVPLTTVVTP-EKPIPIFIERCIEYIEATGLSTEGIYRVSGNKSEMESLQRQFDQD 109
Query: 221 CIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
++ + +AG +K + ELP+PL+ Y + D + A +
Sbjct: 110 HNLDLAEKDFTVNTVAGAMKSFFSELPDPLVPYNMQIDLVEAHK 153
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition
state, gene regulation/signaling protein complex; HET:
GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A
2ngr_B*
Length = 242
Score = 115 bits (289), Expect = 3e-31
Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 5/107 (4%)
Query: 161 KPMFCQPLEEHL--ALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLD 218
F L+ I + L + EG+FR + V+ ++ +
Sbjct: 42 NQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYN 101
Query: 219 A-HCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
+ F+ + H+ A +LK +LRELPEPLLT+ LY +
Sbjct: 102 MGLPVDFDQ--YNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLN 146
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC,
gtpas activation, metal-binding, phorbol-ester binding,
SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Length = 463
Score = 118 bits (298), Expect = 4e-31
Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 2/109 (1%)
Query: 158 NPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCL 217
+K ++ L + K +++C R + G++ EGL+RV+G + ++ +K
Sbjct: 264 KHVKKVYSCDLTTLVKAHTTKRPMVVDMCIREIESRGLNSEGLYRVSGFSDLIEDVKMAF 323
Query: 218 D--AHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
D + D +++ G LKLY R+LP PL+TY Y ++ +A+
Sbjct: 324 DRDGEKADISVNMYEDINIITGALKLYFRDLPIPLITYDAYPKFIESAK 372
Score = 30.6 bits (69), Expect = 0.50
Identities = 5/33 (15%), Positives = 13/33 (39%)
Query: 75 NPMKPMFCQPLEEHLALIGCKIAFPIELCTRAL 107
+K ++ L + K +++C R +
Sbjct: 264 KHVKKVYSCDLTTLVKAHTTKRPMVVDMCIREI 296
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase,
transition state, GAP; HET: GDP; 1.65A {Homo sapiens}
SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B*
Length = 198
Score = 112 bits (283), Expect = 7e-31
Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 5/107 (4%)
Query: 161 KPMFCQPLEEHL--ALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLD 218
F L+ I + L + EG+FR + V+ ++ +
Sbjct: 6 NQQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYN 65
Query: 219 A-HCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
+ F+ H+ A +LK +LRELPEPLLT+ LY +
Sbjct: 66 MGLPVDFDQ--YNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLN 110
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein,
structural genomics, structural genomics consortium,
SGC; HET: 7PE; 1.49A {Homo sapiens}
Length = 201
Score = 108 bits (271), Expect = 5e-29
Identities = 29/97 (29%), Positives = 45/97 (46%)
Query: 168 LEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFEDA 227
L + ++ I + C + Q G+ E GL+R++G VK LK +
Sbjct: 6 LADFVSQTSPMIPSIVVHCVNEIEQRGLTETGLYRISGCDRTVKELKEKFLRVKTVPLLS 65
Query: 228 LEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
D H + +LK +LR L EPLLT+ L ++ AA
Sbjct: 66 KVDDIHAICSLLKDFLRNLKEPLLTFRLNRAFMEAAE 102
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics
consortium, GTPase activation, phosphoprotein,
polymorphism hydrolase activator, SGC; 2.30A {Homo
sapiens}
Length = 271
Score = 101 bits (254), Expect = 6e-26
Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 7/107 (6%)
Query: 161 KPMFCQPLEEHLALIGC---KIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCL 217
+F P I + +L + + EGLFR +G ++K LK +
Sbjct: 62 GKIFGVPFNALPHSAVPEYGHIPSFLVDACTSL-EDHIHTEGLFRKSGSVIRLKALKNKV 120
Query: 218 DAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
D +AG+LK + RELPEP+L L+E L A +
Sbjct: 121 DHGEGCLSS---APPCDIAGLLKQFFRELPEPILPADLHEALLKAQQ 164
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1,
RAB gtpases, APPL1, endocytic PATH golgi complex,
hydrolase-protein binding complex; 2.30A {Homo sapiens}
PDB: 2qv2_A
Length = 366
Score = 101 bits (253), Expect = 3e-25
Identities = 27/123 (21%), Positives = 53/123 (43%), Gaps = 3/123 (2%)
Query: 142 LHLNETLPQLNSLILVNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLF 201
+ + + + L + PL+E + ++ I L L + +E LF
Sbjct: 162 VPVTKLIDLEEDSFLEKEKSLLQMVPLDEGASERPLQVPKEIWLLVDHLFKYACHQEDLF 221
Query: 202 RVTGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLA 261
+ G +++++ CLD + + H +A L ++L LPEP++ Y LY+ L
Sbjct: 222 QTPGMQEELQQIIDCLDTSI---PETIPGSNHSVAEALLIFLEALPEPVICYELYQRCLD 278
Query: 262 AAR 264
+A
Sbjct: 279 SAY 281
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase,
tpase activating protein, CDC42, phosphoinositide
3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP:
a.116.1.1
Length = 216
Score = 96.6 bits (241), Expect = 2e-24
Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 3/102 (2%)
Query: 163 MFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCI 222
+ L E A + A+ + G++ L+R +S + L+ LD
Sbjct: 10 LTLPDLAEQFAPPD-IAPPLLIKLVEAIEKKGLECSTLYRT-QSSSNLAELRQLLDCDTP 67
Query: 223 KFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
+ D HVLA K YL +LP P++ A+Y + ++ A
Sbjct: 68 SVDLE-MIDVHVLADAFKRYLLDLPNPVIPAAVYSEMISLAP 108
>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural
genomics consortium, SGC, transferase; 2.09A {Homo
sapiens}
Length = 214
Score = 89.1 bits (221), Expect = 1e-21
Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 13/98 (13%)
Query: 168 LEEHLALIGCKIAFPI-ELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFED 226
L E + +A P+ A+ + G+D E +R A + D
Sbjct: 30 LPEQFSPPD--VAPPLLVKLVEAIERTGLDSESHYRPELPAPRTD----------WSLSD 77
Query: 227 ALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
++D LA +K +L LP PL+T + A R
Sbjct: 78 VDQWDTAALADGIKSFLLALPAPLVTPEASAEARRALR 115
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.2 bits (93), Expect = 5e-04
Identities = 34/215 (15%), Positives = 67/215 (31%), Gaps = 64/215 (29%)
Query: 48 HMQKKQHEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEHLALIGCKIAFPIELCTRAL 107
++ K +E LL L + + N + CKI L TR
Sbjct: 237 LLKSKPYENCLLVLLN----VQNAKAWNAFN-------------LSCKIL----LTTRFK 275
Query: 108 CQVRRLGNFVQDSYTTITLCHASRDVIKQHEEALL--HLN---ETLPQLNSLILVNPMKP 162
L + T I+L H S + ++LL +L+ + LP+ ++ NP
Sbjct: 276 QVTDFLSA---ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR--EVLTTNPR-- 328
Query: 163 MFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDA--- 219
L++I + G+ ++ +++ L+
Sbjct: 329 --------RLSIIA------------ESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 220 ----HCIKFED--ALEYDAHVLAGVLKLYLRELPE 248
F+ AH+ +L L ++ +
Sbjct: 369 AEYRKM--FDRLSVFPPSAHIPTILLSLIWFDVIK 401
Score = 26.7 bits (58), Expect = 9.9
Identities = 16/136 (11%), Positives = 38/136 (27%), Gaps = 42/136 (30%)
Query: 128 HASRDVIKQHEEALLHLNETLPQLNSLILVNPMKPMFCQPLEEHLALIGCKIAFPIELCT 187
+ +D++ E+A + C+ +++ K E
Sbjct: 16 YQYKDILSVFEDAFV------------------DNFDCKDVQDMP-----KSILSKEEID 52
Query: 188 RALCQIGMDEEGLFRV-----TGGASKVKRLKTCLDAHCIKFEDALEYDAHVLAGVLKLY 242
+ G R+ + V++ E+ L + L +K
Sbjct: 53 HII-MSKDAVSGTLRLFWTLLSKQEEMVQKF----------VEEVLRINYKFLMSPIK-- 99
Query: 243 LRELPEPLLTYALYED 258
E +P + +Y +
Sbjct: 100 -TEQRQPSMMTRMYIE 114
>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative
splicing, coiled coil, SH3 domain, endocytosis,
structural genomics, NPPSFA; 2.49A {Homo sapiens}
Length = 240
Score = 38.9 bits (90), Expect = 8e-04
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 16 FDESEEEDTLATEMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQLNSLILVN 75
F+ES+E M+ + + E + ++ H ++ L E +L I
Sbjct: 174 FEESKEL--AERSMFNFLENDVEQVSQLAVFIEAALDYHRQSTEILQELQSKLQMRISAA 231
Query: 76 PMKP 79
P
Sbjct: 232 SSVP 235
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A
{Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A
2c08_A
Length = 256
Score = 38.2 bits (88), Expect = 0.001
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 16 FDESEEEDTLATEMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQLNSLILVN 75
FDES+E + M+ ++ + E + V Q + H++A+ L + +L I
Sbjct: 190 FDESKEI--AESSMFNLLEMDIEQVSQLSALVQAQLEYHKQAVQILQQVTVRLEERIRQA 247
Query: 76 PMKP 79
+P
Sbjct: 248 SSQP 251
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 0.001
Identities = 45/215 (20%), Positives = 76/215 (35%), Gaps = 59/215 (27%)
Query: 49 MQKKQHEEALLHLNETLPQLN--SLILVN-PMKPMFCQPLEEHLALIGCKIAFPIELCTR 105
+ ++Q ++ + N LP + LVN ++L + G P L
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQVEISLVNGA----------KNLVVSG----PPQSLY-- 387
Query: 106 ALC-QVRRL---GNFVQDSYTTITLCHASRDVIKQHEEALLHLNETLPQ---LNSLILVN 158
L +R+ Q SR I E L N LP +S +L
Sbjct: 388 GLNLTLRKAKAPSGLDQ-----------SR--IPFSERKLKFSNRFLPVASPFHSHLL-V 433
Query: 159 PMKPMFCQPLEE-HLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCL 217
P + + L + +++ I P+ T G D RV G S +R+ C+
Sbjct: 434 PASDLINKDLVKNNVSFNAKDIQIPVY-DTFD----GSD----LRVLSG-SISERIVDCI 483
Query: 218 DAHCIKFEDALEYDA-HVL-------AGVLKLYLR 244
+K+E ++ A H+L +G+ L R
Sbjct: 484 IRLPVKWETTTQFKATHILDFGPGGASGLGVLTHR 518
Score = 35.4 bits (81), Expect = 0.021
Identities = 22/106 (20%), Positives = 33/106 (31%), Gaps = 23/106 (21%)
Query: 118 QDSYTTITLCHASRDVIKQHEEALLHLNETLPQLNSLI---------LVNPMKPMFCQPL 168
+D Y T D+IK E L L T + L NP P
Sbjct: 174 RDLYQTYH--VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN----TPD 227
Query: 169 EEHLALIGCKIAFP-IEL----CTRALCQI-GMDEEGLFRVTGGAS 208
+++L I+ P I + ++ G L GA+
Sbjct: 228 KDYLL--SIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGAT 271
Score = 32.3 bits (73), Expect = 0.19
Identities = 35/218 (16%), Positives = 64/218 (29%), Gaps = 83/218 (38%)
Query: 28 EMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLP-QLNSLILVNPMKPMFCQPLE 86
++Y + + AQ + + A H +T + +++ NP+ E
Sbjct: 1634 DLY----KTSKAAQDVWN----------RADNHFKDTYGFSILDIVINNPVNLTIHFGGE 1679
Query: 87 EHLALIGCKI-----AFPIELCTRALCQVRRLGNFVQDSYTTITLCHASRDVIKQHEEAL 141
+ G +I A E + ++ + + T+ T + E+ L
Sbjct: 1680 K-----GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF---------RSEKGL 1725
Query: 142 LHLNETLPQLNSLILVNPMKPMFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLF 201
L + F QP AL +E A + + +GL
Sbjct: 1726 LSATQ-----------------FTQP-----AL------TLMEK---AAFED-LKSKGLI 1753
Query: 202 R----VTG---G---ASKVKRLKTCLDAHCIKFEDALE 229
G G A L L A + E +E
Sbjct: 1754 PADATFAGHSLGEYAA-----L-ASL-ADVMSIESLVE 1784
Score = 27.7 bits (61), Expect = 5.1
Identities = 27/150 (18%), Positives = 49/150 (32%), Gaps = 45/150 (30%)
Query: 119 DSYTTITLCHASRDVIKQHEEALLHLNETLP-QLNSLILVNPMKPMFCQPLEEHLALIGC 177
D Y T A++DV A H +T + +++ NP+ E+ G
Sbjct: 1634 DLYKT---SKAAQDVW---NRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK-----GK 1682
Query: 178 KIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIK--FEDALEYDAHVL 235
+I E + + + +D G K +++ ++ H F
Sbjct: 1683 RIR---ENYSAMIFETIVD---------GKLKTEKIFKEINEHSTSYTFRSE-------- 1722
Query: 236 AGVLKLYLRELPE---P-LLT--YALYEDW 259
G+L + P L A +ED
Sbjct: 1723 KGLLSA-----TQFTQPALTLMEKAAFEDL 1747
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 3.6
Identities = 8/23 (34%), Positives = 10/23 (43%), Gaps = 7/23 (30%)
Query: 235 LAGVLKLYLRELPE--PLLTYAL 255
L LKLY + P L A+
Sbjct: 25 LQASLKLY---ADDSAPAL--AI 42
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double
layers of alpha helices on TOP and bottom, hydrolase;
HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP:
c.117.1.1 PDB: 1m21_A*
Length = 503
Score = 26.8 bits (60), Expect = 7.8
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 130 SRDVIKQHEEALLHLNETLPQLNSLILVNP 159
S + + + + + L+ T P+L ++I +NP
Sbjct: 27 STTLTQAYLQRIAALDRTGPRLRAVIELNP 56
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.139 0.420
Gapped
Lambda K H
0.267 0.0847 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,118,949
Number of extensions: 246768
Number of successful extensions: 416
Number of sequences better than 10.0: 1
Number of HSP's gapped: 397
Number of HSP's successfully gapped: 35
Length of query: 264
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 172
Effective length of database: 4,133,061
Effective search space: 710886492
Effective search space used: 710886492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.1 bits)