RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16474
         (264 letters)



>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 196

 Score = 82.1 bits (202), Expect = 9e-20
 Identities = 28/104 (26%), Positives = 52/104 (50%), Gaps = 2/104 (1%)

Query: 163 MFCQPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCL--DAH 220
           ++C  L   +     +    +++C R +   G+  EGL+RV+G    ++ +K     D  
Sbjct: 2   VYCCDLTTLVKAHNTQRPMVVDICIREIEARGLKSEGLYRVSGFTEHIEDVKMAFDRDGE 61

Query: 221 CIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
                  +  D +++ G LKLY R+LP P++TY  Y  ++ AA+
Sbjct: 62  KADISANVYPDINIITGALKLYFRDLPIPVITYDTYSKFIDAAK 105


>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]}
          Length = 191

 Score = 71.7 bits (175), Expect = 7e-16
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 5/92 (5%)

Query: 178 KIAFPI-ELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLD----AHCIKFEDALEYDA 232
            I F I + C  A+   G++E+GL+R+ G  S+V++L + L     A   + E   E++ 
Sbjct: 5   SIGFSIIKKCIHAVETRGINEQGLYRIVGVNSRVQKLLSILMDPKTATETETEICAEWEI 64

Query: 233 HVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
             +   LK YLR LP PL+ Y     ++ AA+
Sbjct: 65  KTITSALKTYLRMLPGPLMMYQFQRSFIKAAK 96


>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 184

 Score = 66.7 bits (162), Expect = 4e-14
 Identities = 24/97 (24%), Positives = 41/97 (42%), Gaps = 3/97 (3%)

Query: 166 QPLEEHLALIGCKIAFPIELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDAHCIKFE 225
             L E  A         +     A+ + G++   L+R    +S +  L+  LD      +
Sbjct: 2   PDLAEQFAP-PDIAPPLLIKLVEAIEKKGLECSTLYRT-QSSSNLAELRQLLDCDTPSVD 59

Query: 226 DALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAA 262
                D HVLA   K YL +LP P++  A+Y + ++ 
Sbjct: 60  LE-MIDVHVLADAFKRYLLDLPNPVIPAAVYSEMISL 95


>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 196

 Score = 67.1 bits (163), Expect = 4e-14
 Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 3/105 (2%)

Query: 162 PMFCQPLEEHLALIGCKIAFP--IELCTRALCQIGMDEEGLFRVTGGASKVKRLKTCLDA 219
             F   L+        +   P  +      L    +  EG+FR +     V+ ++   + 
Sbjct: 5   QQFGVSLQHLQEKNPEQEPIPIVLRETVAYLQAHALTTEGIFRRSANTQVVREVQQKYNM 64

Query: 220 HCIKFEDALEYDAHVLAGVLKLYLRELPEPLLTYALYEDWLAAAR 264
                 D      H+ A +LK +LRELPEPLLT+ LY   +    
Sbjct: 65  GLPVDFDQ-YNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLN 108


>d2d4ca1 a.238.1.1 (A:11-247) Endophilin-1 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 237

 Score = 31.6 bits (71), Expect = 0.068
 Identities = 9/51 (17%), Positives = 23/51 (45%)

Query: 20  EEEDTLATEMYYIIARECEIAQVIVDYVHMQKKQHEEALLHLNETLPQLNS 70
           E ++   + M+ ++  + E    +   V  Q + H++A+  L +   +L  
Sbjct: 186 ESKEIAESSMFNLLEMDIEQVSQLSALVQAQLEYHKQAVQILQQVTVRLEE 236


>d1urua_ a.238.1.1 (A:) Amphiphysin {Fruit fly (Drosophila
           melanogaster) [TaxId: 7227]}
          Length = 217

 Score = 25.1 bits (54), Expect = 9.7
 Identities = 6/50 (12%), Positives = 15/50 (30%), Gaps = 1/50 (2%)

Query: 23  DTLATEMYYIIAREC-EIAQVIVDYVHMQKKQHEEALLHLNETLPQLNSL 71
             L  E+  +       +   +      ++  H E     +E    ++ L
Sbjct: 162 TELHDELPALYDSRILFLVTNLQTLFATEQVFHNETAKIYSELEAIVDKL 211


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.139    0.420 

Gapped
Lambda     K      H
   0.267   0.0523    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 993,482
Number of extensions: 45816
Number of successful extensions: 89
Number of sequences better than 10.0: 1
Number of HSP's gapped: 85
Number of HSP's successfully gapped: 7
Length of query: 264
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 180
Effective length of database: 1,254,276
Effective search space: 225769680
Effective search space used: 225769680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.3 bits)