Query psy16475
Match_columns 299
No_of_seqs 179 out of 2008
Neff 9.5
Searched_HMMs 46136
Date Fri Aug 16 22:16:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16475.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16475hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1287|consensus 100.0 5E-31 1.1E-35 236.4 11.8 233 59-296 212-457 (479)
2 TIGR00911 2A0308 L-type amino 99.9 4.8E-25 1E-29 206.8 14.7 233 58-294 242-485 (501)
3 PRK11357 frlA putative fructos 99.9 9.4E-25 2E-29 202.0 14.9 222 58-284 202-440 (445)
4 TIGR00908 2A0305 ethanolamine 99.9 1.7E-24 3.7E-29 200.2 15.6 214 59-280 199-431 (442)
5 TIGR00906 2A0303 cationic amin 99.9 4.2E-23 9.2E-28 194.9 16.8 221 59-284 239-556 (557)
6 COG1113 AnsP Gamma-aminobutyra 99.9 7.5E-23 1.6E-27 181.3 17.1 253 25-280 160-450 (462)
7 PRK10655 potE putrescine trans 99.9 2.1E-23 4.6E-28 192.7 13.4 217 59-282 197-431 (438)
8 TIGR00909 2A0306 amino acid tr 99.9 4.6E-23 1E-27 190.0 15.5 210 58-277 202-428 (429)
9 PRK15049 L-asparagine permease 99.9 1.4E-22 3E-27 189.5 13.2 212 59-277 228-467 (499)
10 PRK11387 S-methylmethionine tr 99.9 2.5E-22 5.4E-27 187.0 11.3 216 58-281 213-458 (471)
11 PRK10836 lysine transporter; P 99.9 5E-22 1.1E-26 185.8 13.4 195 60-256 214-438 (489)
12 PRK10644 arginine:agmatin anti 99.9 9E-22 2E-26 182.1 14.4 218 59-289 199-439 (445)
13 TIGR00907 2A0304 amino acid pe 99.9 1E-21 2.2E-26 183.6 14.7 220 59-284 225-480 (482)
14 PRK10746 putative transport pr 99.9 6E-22 1.3E-26 183.7 12.6 219 58-279 207-449 (461)
15 PRK10197 gamma-aminobutyrate t 99.9 7.9E-22 1.7E-26 182.3 13.1 220 58-280 188-430 (446)
16 TIGR00913 2A0310 amino acid pe 99.9 7.3E-22 1.6E-26 184.4 11.6 193 58-252 204-427 (478)
17 PRK10249 phenylalanine transpo 99.9 2.8E-21 6.1E-26 179.2 14.3 214 56-277 214-454 (458)
18 TIGR00910 2A0307_GadC glutamat 99.9 3.3E-21 7.2E-26 180.5 14.3 193 59-253 202-423 (507)
19 TIGR01773 GABAperm gamma-amino 99.9 1.9E-21 4E-26 180.4 11.4 221 57-280 207-450 (452)
20 TIGR03813 put_Glu_GABA_T putat 99.9 3E-21 6.6E-26 179.9 12.4 175 60-236 203-397 (474)
21 TIGR00905 2A0302 transporter, 99.9 5.1E-21 1.1E-25 178.3 13.7 219 59-290 207-446 (473)
22 TIGR03810 arg_ornith_anti argi 99.9 1.6E-21 3.5E-26 181.4 10.1 226 59-296 203-447 (468)
23 PRK10580 proY putative proline 99.9 3.1E-21 6.7E-26 179.1 11.7 217 58-279 206-447 (457)
24 KOG1289|consensus 99.9 1.7E-21 3.7E-26 175.7 8.9 220 60-284 261-515 (550)
25 PRK11049 D-alanine/D-serine/gl 99.9 4E-21 8.7E-26 178.8 11.7 216 57-280 217-461 (469)
26 COG0833 LysP Amino acid transp 99.8 4.4E-21 9.6E-26 173.4 11.3 253 25-280 193-501 (541)
27 PRK10238 aromatic amino acid t 99.8 1E-20 2.3E-25 175.3 12.6 189 59-255 208-421 (456)
28 PRK11021 putative transporter; 99.8 1.6E-18 3.4E-23 158.9 14.0 180 58-254 184-383 (410)
29 TIGR03428 ureacarb_perm permea 99.8 8.4E-19 1.8E-23 163.5 12.2 175 59-239 221-423 (475)
30 PRK10435 cadB lysine/cadaverin 99.8 1.3E-18 2.8E-23 160.6 13.0 183 58-251 194-402 (435)
31 TIGR00930 2a30 K-Cl cotranspor 99.8 2.6E-18 5.7E-23 169.8 15.2 193 60-253 289-517 (953)
32 PRK15238 inner membrane transp 99.8 1.9E-18 4.2E-23 161.9 12.3 174 58-234 218-431 (496)
33 KOG1286|consensus 99.7 2.5E-17 5.3E-22 153.6 15.1 176 56-235 237-439 (554)
34 PF00324 AA_permease: Amino ac 99.7 7E-19 1.5E-23 164.3 4.6 177 58-236 207-409 (478)
35 COG0531 PotE Amino acid transp 99.7 1.9E-17 4.1E-22 154.1 13.0 174 58-236 208-401 (466)
36 KOG1287|consensus 99.7 4.6E-17 1E-21 146.8 11.0 152 2-153 313-465 (479)
37 PF13520 AA_permease_2: Amino 99.6 5.6E-16 1.2E-20 142.8 6.9 190 57-254 194-404 (426)
38 PRK11357 frlA putative fructos 99.5 1.4E-13 3.1E-18 127.5 10.3 129 1-130 306-437 (445)
39 TIGR00911 2A0308 L-type amino 99.5 1.2E-13 2.6E-18 129.9 7.9 125 1-125 343-467 (501)
40 TIGR00909 2A0306 amino acid tr 99.4 7.4E-13 1.6E-17 122.2 10.9 121 2-125 305-427 (429)
41 TIGR00908 2A0305 ethanolamine 99.4 1.2E-12 2.6E-17 121.2 10.9 106 1-107 302-409 (442)
42 TIGR00906 2A0303 cationic amin 99.3 3.6E-11 7.9E-16 114.1 11.0 74 1-74 339-412 (557)
43 PRK10655 potE putrescine trans 99.2 4.6E-11 9.9E-16 110.6 8.5 122 2-127 299-427 (438)
44 KOG2082|consensus 99.1 1.1E-09 2.5E-14 102.0 12.9 223 60-291 419-657 (1075)
45 PRK10836 lysine transporter; P 99.1 3.4E-10 7.3E-15 106.2 9.5 124 1-125 322-461 (489)
46 TIGR03810 arg_ornith_anti argi 99.1 3.2E-10 6.9E-15 105.8 8.7 120 2-127 305-430 (468)
47 PRK10197 gamma-aminobutyrate t 99.0 1.1E-09 2.4E-14 101.6 10.4 124 1-125 291-425 (446)
48 PRK11387 S-methylmethionine tr 99.0 8.4E-10 1.8E-14 103.1 9.6 128 1-129 315-457 (471)
49 TIGR00913 2A0310 amino acid pe 99.0 1.1E-09 2.4E-14 102.5 10.2 84 1-85 315-409 (478)
50 TIGR00905 2A0302 transporter, 99.0 7.8E-10 1.7E-14 103.4 9.0 120 2-126 309-434 (473)
51 KOG1288|consensus 99.0 1.6E-09 3.5E-14 100.3 9.8 178 64-251 307-500 (945)
52 PRK10644 arginine:agmatin anti 99.0 1.6E-09 3.5E-14 100.5 8.6 121 2-128 301-428 (445)
53 PRK15049 L-asparagine permease 99.0 4.5E-09 9.8E-14 98.7 11.1 106 1-107 329-445 (499)
54 TIGR00910 2A0307_GadC glutamat 98.9 3.7E-09 8E-14 99.5 9.0 84 1-85 308-400 (507)
55 TIGR01773 GABAperm gamma-amino 98.9 4.4E-09 9.4E-14 97.8 9.1 81 1-82 311-397 (452)
56 TIGR03813 put_Glu_GABA_T putat 98.9 5E-09 1.1E-13 98.0 9.4 83 2-85 307-397 (474)
57 PRK10249 phenylalanine transpo 98.9 1.3E-08 2.8E-13 94.8 10.7 84 1-85 318-409 (458)
58 PRK10746 putative transport pr 98.9 9E-09 1.9E-13 95.9 9.4 84 1-85 309-402 (461)
59 PRK11049 D-alanine/D-serine/gl 98.8 1.1E-08 2.4E-13 95.5 9.1 83 2-85 321-413 (469)
60 TIGR00907 2A0304 amino acid pe 98.8 9.8E-09 2.1E-13 96.3 8.7 84 1-85 330-420 (482)
61 PRK10580 proY putative proline 98.8 2.1E-08 4.6E-13 93.4 10.0 98 1-99 308-416 (457)
62 TIGR00930 2a30 K-Cl cotranspor 98.8 6.6E-08 1.4E-12 96.6 11.7 98 1-98 412-513 (953)
63 PRK10238 aromatic amino acid t 98.7 6.4E-08 1.4E-12 90.1 10.7 75 1-76 309-389 (456)
64 COG0531 PotE Amino acid transp 98.7 1E-07 2.3E-12 88.8 10.1 84 2-85 313-401 (466)
65 PRK10435 cadB lysine/cadaverin 98.7 7.6E-08 1.6E-12 89.1 8.7 68 2-70 297-376 (435)
66 PRK15238 inner membrane transp 98.6 1.9E-07 4.2E-12 87.9 9.7 81 3-85 344-433 (496)
67 COG1113 AnsP Gamma-aminobutyra 98.6 6.1E-07 1.3E-11 80.8 11.0 104 1-105 312-425 (462)
68 PF13520 AA_permease_2: Amino 98.6 1.2E-07 2.6E-12 87.4 6.5 80 2-82 299-385 (426)
69 PRK11021 putative transporter; 98.5 3.9E-07 8.3E-12 83.7 9.7 72 1-73 286-362 (410)
70 TIGR03428 ureacarb_perm permea 98.5 3.6E-07 7.8E-12 85.5 9.6 85 1-85 323-420 (475)
71 COG0833 LysP Amino acid transp 98.5 3.7E-07 8.1E-12 83.8 9.3 98 1-99 351-461 (541)
72 KOG1286|consensus 98.2 4.6E-06 1E-10 78.6 7.5 71 2-73 347-423 (554)
73 TIGR00796 livcs branched-chain 98.1 4.2E-05 9.2E-10 69.0 11.3 77 163-241 293-371 (378)
74 PF00324 AA_permease: Amino ac 98.0 8E-06 1.7E-10 76.6 5.0 73 1-73 314-392 (478)
75 KOG1289|consensus 97.8 5.2E-05 1.1E-09 69.9 6.9 52 2-53 366-421 (550)
76 TIGR00837 araaP aromatic amino 97.1 0.006 1.3E-07 55.4 11.2 76 158-237 292-370 (381)
77 KOG2082|consensus 97.1 0.0043 9.3E-08 59.3 9.7 97 2-99 522-622 (1075)
78 KOG2083|consensus 96.9 0.0025 5.4E-08 59.4 7.0 113 138-251 328-444 (643)
79 TIGR00796 livcs branched-chain 94.4 0.42 9.2E-06 43.4 10.1 71 13-85 294-366 (378)
80 PF13906 AA_permease_C: C-term 91.5 0.51 1.1E-05 29.4 4.3 48 232-282 1-50 (51)
81 KOG1288|consensus 91.2 0.54 1.2E-05 45.2 6.1 81 2-82 398-481 (945)
82 PHA02764 hypothetical protein; 86.4 5.9 0.00013 34.9 8.6 28 147-177 258-285 (399)
83 TIGR00837 araaP aromatic amino 75.8 12 0.00025 34.0 7.3 34 7-42 292-325 (381)
84 PHA02764 hypothetical protein; 72.3 5.1 0.00011 35.3 3.7 23 2-26 263-285 (399)
85 COG4025 Predicted membrane pro 71.5 58 0.0013 27.4 9.4 13 150-163 58-70 (284)
86 TIGR00912 2A0309 spore germina 68.5 8.3 0.00018 34.6 4.6 38 60-97 188-225 (359)
87 PF06570 DUF1129: Protein of u 67.5 32 0.0007 28.3 7.5 18 264-281 183-200 (206)
88 KOG1304|consensus 56.0 94 0.002 29.0 8.9 39 61-99 251-292 (449)
89 PF14256 YwiC: YwiC-like prote 50.5 1.1E+02 0.0023 23.2 7.5 30 206-236 33-62 (129)
90 PF05525 Branch_AA_trans: Bran 49.6 2.1E+02 0.0046 26.6 10.2 71 164-237 300-373 (427)
91 PRK15132 tyrosine transporter 48.1 2.3E+02 0.0049 26.2 11.3 42 193-236 330-372 (403)
92 KOG1303|consensus 46.7 67 0.0014 30.0 6.6 42 60-101 237-278 (437)
93 PF03222 Trp_Tyr_perm: Tryptop 44.7 2.5E+02 0.0054 25.7 13.1 41 194-236 334-375 (394)
94 PRK11375 allantoin permease; P 43.8 92 0.002 29.4 7.2 14 178-191 349-362 (484)
95 PF02705 K_trans: K+ potassium 42.4 1.7E+02 0.0036 28.1 8.5 70 155-224 303-378 (534)
96 PF08693 SKG6: Transmembrane a 30.2 46 0.001 19.5 1.8 11 269-279 27-37 (40)
97 PF14667 Polysacc_synt_C: Poly 29.9 2.3E+02 0.0051 21.0 9.1 20 172-191 27-46 (146)
98 KOG2083|consensus 29.2 57 0.0012 31.4 3.2 82 2-83 342-426 (643)
99 COG1114 BrnQ Branched-chain am 29.0 4.8E+02 0.01 24.3 10.7 72 164-237 302-375 (431)
100 COG4984 Predicted membrane pro 26.5 2.4E+02 0.0052 26.7 6.5 20 263-282 207-226 (644)
101 PRK13108 prolipoprotein diacyl 25.9 2.3E+02 0.005 26.6 6.5 27 261-287 258-284 (460)
102 PF13965 SID-1_RNA_chan: dsRNA 22.5 6.2E+02 0.013 24.7 8.8 21 208-228 347-368 (570)
No 1
>KOG1287|consensus
Probab=99.97 E-value=5e-31 Score=236.43 Aligned_cols=233 Identities=33% Similarity=0.589 Sum_probs=191.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHH--HHHHh--hcchHHHHHHHHH--HHhccceeeeeeeec
Q psy16475 59 FIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFL--VVTPI--LEAPREVGMAVLI--TLSGVPVYLIGVKWR 131 (299)
Q Consensus 59 ~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~--i~~~~--~~~~~~~~~~~~~--~~~g~~~~~~~~~~~ 131 (299)
+-.++|.||+.+....||.|||+| .|+++..+..+.+..+ ..+++ ..++++...+.+. .+.... ...+.
T Consensus 212 sglfa~~GWd~lN~vteEiknP~ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~----~G~~~ 287 (479)
T KOG1287|consen 212 SGLFAFSGWDYLNYVTEEIKNPRRTLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRI----LGVFA 287 (479)
T ss_pred HhhhcccCchhhccchHhhcCccccchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHh----ccchH
Confidence 455799999999999999999999 9996665555444444 34444 2456655432211 111100 00000
Q ss_pred ---c--cCcccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q psy16475 132 ---D--KPEAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFV 206 (299)
Q Consensus 132 ---~--~~~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~ 206 (299)
. .....+++.|+.+.+.||..+ ++||||++|+.|+++|++++||..|+++++.+++++.+.+++++++|+.++.
T Consensus 288 ~~ip~~ValS~~G~~n~~ifs~SR~~~-~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~ 366 (479)
T KOG1287|consen 288 WAIPFSVALSLIGSLNSVIFSSSRLFY-AGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFA 366 (479)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHH-HHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 0 002235899999999999999 9999999999999999888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCccchhHHHHHHHHHHHHHHHhhcccc-hHHHHHHHHHHHhhhheeeeeeeecCCc
Q psy16475 207 ESAFIMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEA-PREVGMAVLITLSGVPVYLIGVKWRDKP 285 (299)
Q Consensus 207 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (299)
.++.+.++..+++++|+|+|+.+||+|.|...|+++...++++...+...+ +.++.++.++.+.|.++|+.+.+++++|
T Consensus 367 ~~l~~~l~~~gll~lR~k~p~~~rPiKvpl~~p~~~~~~~i~lvvip~~~~~~~~~~ig~~i~l~G~~~Y~~~i~~~~~p 446 (479)
T KOG1287|consen 367 YWLFRGLSMAGLLWLRWKHPPLPRPIKVPLFIPILFLLICIFLVVIPIISDFPVETLIGIGIILSGVPFYFLFIHWKKKP 446 (479)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCCCEeeeeehHHHHHHHHHHHhheeeeecCCccchhHHHHHHHhhhhheEEEEecCCc
Confidence 999999999999999999999999999999999999999999999999888 5679999999999999999999999999
Q ss_pred hhhhhcccceE
Q psy16475 286 EAFTRSFSKFI 296 (299)
Q Consensus 286 ~~~~~~~~~~~ 296 (299)
+.+++..++++
T Consensus 447 ~~~~~~~~~it 457 (479)
T KOG1287|consen 447 KWLRKISESIT 457 (479)
T ss_pred HHHHHhhHHHH
Confidence 99999877654
No 2
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.93 E-value=4.8e-25 Score=206.79 Aligned_cols=233 Identities=33% Similarity=0.604 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHh----hcchHHHHHHHHHHHhcccee-eeeeeec
Q psy16475 58 AFIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPI----LEAPREVGMAVLITLSGVPVY-LIGVKWR 131 (299)
Q Consensus 58 ~~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~----~~~~~~~~~~~~~~~~g~~~~-~~~~~~~ 131 (299)
....+++.|+|...+.+||.|||+| +||++.........+++.... ..++++....... ...+. .......
T Consensus 242 ~~~~~af~G~e~~~~~a~E~knP~r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~~~~~l~~~~~~---~~~~~~~~~g~~~ 318 (501)
T TIGR00911 242 YSGIWAYGGWNYLNFVTEEVKNPYRTLPIAIIISMPIVTFIYVLTNIAYFTVLSPEELLASLAV---AVDFGERLLGVMS 318 (501)
T ss_pred HHHHHHHHhHHHHhhhHHHhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcChHH---HHHHHHHHhhhHH
Confidence 4567899999999999999999999 999666555554444443321 1222322111000 00000 0000000
Q ss_pred c-----cCcccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q psy16475 132 D-----KPEAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFV 206 (299)
Q Consensus 132 ~-----~~~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~ 206 (299)
. ......++.|+.+.+.+|+++ +++|||.+|++|+|+|+|+++|++|++++++++++....++++.+.++.++.
T Consensus 319 ~~i~~~~~is~~~~~~~~~~~~sR~l~-a~ardg~lP~~~~~v~~~~~~P~~all~~~~i~~l~~~~~~~~~l~~~~~~~ 397 (501)
T TIGR00911 319 WAMPALVGLSCFGSVNGSLFSSSRLFF-VGGREGHLPSLLSMIHVKRLTPLPSLLIVCTLTLLMLFSGDIYSLINLISFA 397 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCccHHHHHhcCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 0 001225788999999999999 9999999999999999999999999999999988877778888889999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCccchhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhhhheeeeeeeecCCch
Q psy16475 207 ESAFIMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLIGVKWRDKPE 286 (299)
Q Consensus 207 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (299)
.++.|.++.++.+++|+|+|+.+||||.|.+.+.++++.++++++.+...++........+.++|.++|+...+++++|+
T Consensus 398 ~~i~y~l~~~a~i~lR~~~p~~~rp~r~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~~~~ 477 (501)
T TIGR00911 398 NWLFNALAVAGLLWLRYKRPEMNRPIKVPLFFPVFFLLSCLFLIILSLYSPPVGCGVGFIIMLTGVPVYFFGVWWQNKPK 477 (501)
T ss_pred HHHHHHHHHHHHHheeccCCCCCCCccCchHHHHHHHHHHHHHhhhhhccCchhhHHHHHHHHHHHHHHHHHHHHHhccH
Confidence 99999999999999999999999999999988888888888888777666655555666777788777764333444455
Q ss_pred hhhhcccc
Q psy16475 287 AFTRSFSK 294 (299)
Q Consensus 287 ~~~~~~~~ 294 (299)
..+...++
T Consensus 478 ~~~~~~~~ 485 (501)
T TIGR00911 478 WFRYLIVS 485 (501)
T ss_pred hhccccce
Confidence 55443333
No 3
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.92 E-value=9.4e-25 Score=202.01 Aligned_cols=222 Identities=18% Similarity=0.227 Sum_probs=160.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHh----hcchHHHHHH---HHHHHhccceeeeeee
Q psy16475 58 AFIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPI----LEAPREVGMA---VLITLSGVPVYLIGVK 129 (299)
Q Consensus 58 ~~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~----~~~~~~~~~~---~~~~~~g~~~~~~~~~ 129 (299)
....+++.|+|...+.+||.|||+| +||++.........+++.... ..++++.... ........+. ...
T Consensus 202 ~~~~~af~G~e~~~~~a~E~k~P~r~iP~Ai~~~~~i~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~---~g~ 278 (445)
T PRK11357 202 SATSWSYTGMASICYMTGEIKNPGKTMPRALIGSCLLVLVLYTLLALVISGLMPFDKLANSETPISDALTWIPA---LGS 278 (445)
T ss_pred HHHHHHHhhHHHHHhhHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCchHHHHHHHHHh---cch
Confidence 3457899999999999999999999 999665555444444333222 1222221110 0000000000 000
Q ss_pred eccc------CcccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHhccHHHHHHHH
Q psy16475 130 WRDK------PEAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFTSDVFLLITYS 203 (299)
Q Consensus 130 ~~~~------~~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~ 203 (299)
.... .....++.|+.+...+|+++ +|+|||.+|++|+|+|||+|+|++|+++++++++++.+.++++++.++.
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~-a~ardg~lp~~~~~v~~~~~tP~~a~l~~~~~~~~~~~~~~~~~l~~~~ 357 (445)
T PRK11357 279 TAGIFVAITAMIVILGSLSSCVMYQPRLEY-AMAKDNLFFKCFGHVHPKYNTPDVSIILQGALGIFFIFVSDLTSLLGYF 357 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHH-HHHhcCCchHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence 0000 01124677888899999999 9999999999999999999999999999999999888778899999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCCCccchhH--HHHHHHHHHHHHHHhhcccchHHH-HHHHHHHHhhhheeeeeee
Q psy16475 204 SFVESAFIMISVCGILYLRYTQPDMHRPIKVSLW--VPISFVLICVFLVVTPILEAPREV-GMAVLITLSGVPVYLIGVK 280 (299)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 280 (299)
+...++.|.+...+.+++||++ +.++|||.|.. .++++++.++++++.....++... ..+..+.++|.++|++.+|
T Consensus 358 ~~~~~~~~~~~~~a~i~lr~~~-~~~~~~k~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~ 436 (445)
T PRK11357 358 TLVMCFKNTLTFGSIIWCRKRD-DYKPLWRTPAFGLMTTLAIASSLILVASTFVWAPIPGLICAVIVIATGLPAYAFWAK 436 (445)
T ss_pred HHHHHHHHHHHHHHHheeecCC-CCCCCcccCCchHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhhhHHhheec
Confidence 9999999999999999888775 45689999874 788888888888877655666554 3567788899998887766
Q ss_pred ecCC
Q psy16475 281 WRDK 284 (299)
Q Consensus 281 ~~~~ 284 (299)
|+++
T Consensus 437 ~~~~ 440 (445)
T PRK11357 437 RSRQ 440 (445)
T ss_pred hhhh
Confidence 6543
No 4
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.92 E-value=1.7e-24 Score=200.18 Aligned_cols=214 Identities=18% Similarity=0.227 Sum_probs=151.8
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHhh----cchHHHHHHHHHHHhccceeeeeee-ecc
Q psy16475 59 FIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPIL----EAPREVGMAVLITLSGVPVYLIGVK-WRD 132 (299)
Q Consensus 59 ~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~-~~~ 132 (299)
...+++.|+|...+.+||.|||+| +||++.........+++..... .++++.... +.|....... .+.
T Consensus 199 ~~~~af~G~e~~~~~aeE~k~P~r~iprai~~s~~~~~~~~~~~~~~~~g~~~~~~l~~~------~~p~~~~~~~~~g~ 272 (442)
T TIGR00908 199 FAIWFFLAVEGVAMAAEETKNPKRDIPRGLIGAILTLLALAAGILVVGPGAADAKELMGS------NNPLPEALESIYGG 272 (442)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHHHhcCCCHHHhCCC------cchHHHHHHHHhCC
Confidence 346789999999999999999999 9996555444333333322221 122221100 0010000000 000
Q ss_pred c-----------CcccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHhccHHHHHH
Q psy16475 133 K-----------PEAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFTSDVFLLIT 201 (299)
Q Consensus 133 ~-----------~~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~ 201 (299)
. .....++.|+.+.+.+|+++ +|+|||.+|++|+|+| |+|+|++|++++++++.+..+.++.+.+.+
T Consensus 273 ~~~~~~~i~~~~~~~~~~s~~~~~~~~sR~l~-a~ardg~lP~~~~~~~-~~~~P~~Ail~~~~i~~~~~l~~~~~~l~~ 350 (442)
T TIGR00908 273 STWMSQFVNLVGLFGLIASFHGIIYGYSRQIF-ALSRAGYLPESLSKVN-RKKAPVLAIVVPGVIGFGLSLTGQTALIIL 350 (442)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCccHHHHHhC-CCCCcHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 0 01123577888999999999 9999999999999999 999999999999999998877777888899
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCCCccchh--HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhhhheeeeee
Q psy16475 202 YSSFVESAFIMISVCGILYLRYTQPDMHRPIKVSL--WVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLIGV 279 (299)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (299)
++++...+.|.+++.+++++|+++|+.+||||.|. +.+++.++.++++++.....++.........++++.+.|+..+
T Consensus 351 ~~~~~~~~~y~~~~~a~i~lr~~~p~~~rp~~~p~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 430 (442)
T TIGR00908 351 VSVFGAIISYVLSMAAHFTLRIRRPDMERPYRTPGGILTPGVALVLACVALVTGFYVDPRVVVGAVAIFVVLIGYYFLYS 430 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCccCCCcchHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999986 5788888888888777665555333334455555555555443
Q ss_pred e
Q psy16475 280 K 280 (299)
Q Consensus 280 ~ 280 (299)
|
T Consensus 431 ~ 431 (442)
T TIGR00908 431 R 431 (442)
T ss_pred h
Confidence 3
No 5
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.90 E-value=4.2e-23 Score=194.92 Aligned_cols=221 Identities=18% Similarity=0.172 Sum_probs=158.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHhh---cchHHHHH-----HHHHHHhccceeeeeee
Q psy16475 59 FIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPIL---EAPREVGM-----AVLITLSGVPVYLIGVK 129 (299)
Q Consensus 59 ~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~~---~~~~~~~~-----~~~~~~~g~~~~~~~~~ 129 (299)
..+++|.|+|...+.+||.|||+| +|+++.....+...+++..... ..|.+... .......|.+..... .
T Consensus 239 ~~~faf~Gfd~v~~~aeE~knP~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~~i-i 317 (557)
T TIGR00906 239 TCFFAFIGFDAIATTGEEVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYI-V 317 (557)
T ss_pred HHHHHHhhHHHHHHhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHHHH-H
Confidence 456899999999999999999999 9996655555444444433321 11211110 000001110000000 0
Q ss_pred ecccCcccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q psy16475 130 WRDKPEAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESA 209 (299)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~~~~ 209 (299)
.........++.++.+.+.+|++| +|+|||.+|++|+|+|||+++|++|++++++++.++.++.+++.+.++.+.+.++
T Consensus 318 ~~~~~~~~~~sl~~~~~~~sRil~-amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~~~~~~l~~l~sig~ll 396 (557)
T TIGR00906 318 AVGALCGMSTSLLGGMFPLPRVIY-AMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFDLKALVDLLSIGTLL 396 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 000001124677888999999999 9999999999999999999999999999999998888777899999999999999
Q ss_pred HHHHHHHHHHhhhcc-----------------------------------------------------------------
Q psy16475 210 FIMISVCGILYLRYT----------------------------------------------------------------- 224 (299)
Q Consensus 210 ~~~~~~~~~~~~r~~----------------------------------------------------------------- 224 (299)
.|.+...+++++|++
T Consensus 397 ~y~lv~~~~l~lR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (557)
T TIGR00906 397 AYSLVAACVLILRYQPGLVYGQAKDTDEKDTLDSWVPFTSKSESQSEGFSLRTLFSGLILGLSILTTYGRAAIAEEAWSI 476 (557)
T ss_pred HHHHHHHHHHHhhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHHhhhhhccccchhH
Confidence 999999999988843
Q ss_pred -------------------CCCC--CCCccchh--HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhhhheeeeeeee
Q psy16475 225 -------------------QPDM--HRPIKVSL--WVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLIGVKW 281 (299)
Q Consensus 225 -------------------~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (299)
+|+. +++||.|. +.|.+.+..++++.... +...+.-...+..+|.++|+.+.+|
T Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~p~~p~~p~~~i~~~~~l~~~l---~~~~~~~~~~w~~~g~~~y~~yg~~ 553 (557)
T TIGR00906 477 ALLTLFLVLFLLVVLTIWRQPQNKQKVAFKVPLVPFLPALSILINIFLMVQL---DADTWVRFAIWMAIGFLIYFLYGIR 553 (557)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3443 56799998 48999999999988765 3346666677888999888877666
Q ss_pred cCC
Q psy16475 282 RDK 284 (299)
Q Consensus 282 ~~~ 284 (299)
+.+
T Consensus 554 ~s~ 556 (557)
T TIGR00906 554 HSL 556 (557)
T ss_pred ccC
Confidence 544
No 6
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.90 E-value=7.5e-23 Score=181.27 Aligned_cols=253 Identities=15% Similarity=0.173 Sum_probs=166.9
Q ss_pred chHHHHHHHHHHHHHHHhc--------ChHHHHHH--------hh-HHHHHHHHHHHHHHHHHHhcCCCCCCCce-ehhH
Q psy16475 25 PTPSLVFLNILSLFMLFTS--------DVFLLITY--------SS-FVESAFIMISVCGILYLRYTQPDMHRPIK-VSLW 86 (299)
Q Consensus 25 P~~ail~~~vi~~i~~~~~--------~~~~l~~~--------~~-~~~~~~~~~~~~g~~~~~~~~~E~~~p~k-iP~~ 86 (299)
|+.+++..++++..+++.+ .++|+.+- .+ .......+++|.|.|.+...+.|.|||+| +||+
T Consensus 160 KV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~ipkA 239 (462)
T COG1113 160 KVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAIPKA 239 (462)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHHHHH
Confidence 4788888888888877642 12333321 11 22344577899999999999999999999 9995
Q ss_pred HHHHHHHHHHHHHHHHh---h---cc---hHHHHHHHHHHHhccceeeeeeeecccCcccccccchhhhhhhhhhhcccc
Q psy16475 87 VPISFVLICVFLVVTPI---L---EA---PREVGMAVLITLSGVPVYLIGVKWRDKPEAFTRSFNALTYFVQKLMCFVGA 157 (299)
Q Consensus 87 ~~~~~~~~~~~~i~~~~---~---~~---~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~~a 157 (299)
+--....+..+++.... . ++ +++..........|+|.-. .....--.....|++||.+++++|++| ++|
T Consensus 240 in~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi~~Aa-~i~N~VVLtAa~S~~NSglystsRmL~-~la 317 (462)
T COG1113 240 INSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGIPFAA-GIMNFVVLTAALSALNSGLYSTSRMLY-SLA 317 (462)
T ss_pred HhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCCcccc-cceeEEEeechhhcccccccccchHHH-HHh
Confidence 54433333333332221 1 11 1222223333445655210 000000113346899999999999999 999
Q ss_pred ccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC--C
Q psy16475 158 RYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFT------SDVFLLITYSSFVESAFIMISVCGILYLRYTQPDM--H 229 (299)
Q Consensus 158 ~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~ 229 (299)
+||..||.++|+| |+++|++|++++++..++-..+ ..|+.+.+.++......|.++.++++++||++|+. +
T Consensus 318 ~~g~APk~~~kls-k~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk~~~~~~~~ 396 (462)
T COG1113 318 KQGDAPKAFAKLS-KRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLGLLFVWLMILLSQLKLRKAKPAEGKK 396 (462)
T ss_pred hcCcccHhHhhcc-ccCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccC
Confidence 9999999999999 8999999999999887765443 34899999999999999999999999999976654 3
Q ss_pred CCccchh--HHHHHHHHHHHHHHHhhccc-chHHHHHHHHHHHhhhheeeeeee
Q psy16475 230 RPIKVSL--WVPISFVLICVFLVVTPILE-APREVGMAVLITLSGVPVYLIGVK 280 (299)
Q Consensus 230 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 280 (299)
.+||.|. +...+.+++.+.+++....+ +.+..+.....+++....+++.++
T Consensus 397 ~~fkm~~~p~~~~l~l~fl~~vlv~m~~~~~t~~~~~~~~~~~~~l~i~~~~~~ 450 (462)
T COG1113 397 LKFKMPLYPFTNYLTLAFLAFVLVLMLFDPDTRISLLVGPVWLVLLGIGYLVKR 450 (462)
T ss_pred cccccccccHHHHHHHHHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHhh
Confidence 4688886 35566666666555555544 334444444444433333343333
No 7
>PRK10655 potE putrescine transporter; Provisional
Probab=99.90 E-value=2.1e-23 Score=192.66 Aligned_cols=217 Identities=12% Similarity=0.141 Sum_probs=152.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHh----hcchHHHHHHHHHHHhccceeeeeeeeccc
Q psy16475 59 FIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPI----LEAPREVGMAVLITLSGVPVYLIGVKWRDK 133 (299)
Q Consensus 59 ~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 133 (299)
...+++.|+|...+.+||.|||+| +||++.........+++.... ..+.++...... ................
T Consensus 197 ~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~~~~~Y~l~~~~~~~~~~~~~l~~~~~--p~~~~~~~~~g~~~~~ 274 (438)
T PRK10655 197 MTLWAFLGLESACANSDAVENPERNVPIAVLGGTLGAAVIYIVSTNVIAGIVPNMELANSTA--PFGLAFAQMFNPTVGK 274 (438)
T ss_pred HHHHHHhhhhhhhhhHHHhhCccccccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhhccc--hHHHHHHHHcChhHHH
Confidence 457899999999999999999999 999666555554444443322 112222211000 0000000000000000
Q ss_pred C------cccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHh-------ccHHHHH
Q psy16475 134 P------EAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFT-------SDVFLLI 200 (299)
Q Consensus 134 ~------~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~-------~~~~~l~ 200 (299)
. ....++.++.+.+.+|+++ +++|||.+|++|+|+| |+++|++|++++++++.++.+. .+++.+.
T Consensus 275 ~~~~~~~is~~~~~~~~~~~~sR~~~-~~a~dg~lP~~~~~v~-~~~tP~~all~~~~i~~~l~l~~~~~~~~~~~~~l~ 352 (438)
T PRK10655 275 IVMALMVMSCCGSLLGWQFTIAQVFK-SSADEGYFPKIFSRVT-KVDAPVQGMLIIVVIQSLLSLMTISPSLNSQFNVLV 352 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCchhHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 0 1224678888899999999 9999999999999999 7899999999999987765542 2588899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCCCCccchhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhhhheeeeeee
Q psy16475 201 TYSSFVESAFIMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLIGVK 280 (299)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (299)
++.+....+.|.++.++++++|+|+|+.+||||.+...+.++.+++++.+... +......+..+.++|.++|.+.+|
T Consensus 353 ~~~~~~~~i~y~~~~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~y~~~~~ 429 (438)
T PRK10655 353 NLAVVTNIIPYILSMAALVIIQKVANVPPSKAKVANFIAFVGALYSFYALYSS---GEEAMLYGSIVTFLGWTLYGLISP 429 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988888899988777777777777554422 223456677888899988876655
Q ss_pred ec
Q psy16475 281 WR 282 (299)
Q Consensus 281 ~~ 282 (299)
|+
T Consensus 430 ~~ 431 (438)
T PRK10655 430 RF 431 (438)
T ss_pred hh
Confidence 54
No 8
>TIGR00909 2A0306 amino acid transporter.
Probab=99.90 E-value=4.6e-23 Score=189.98 Aligned_cols=210 Identities=17% Similarity=0.297 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHh---hc-chHHHHHHHHHHHhccceeeeeeee-c
Q psy16475 58 AFIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPI---LE-APREVGMAVLITLSGVPVYLIGVKW-R 131 (299)
Q Consensus 58 ~~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~---~~-~~~~~~~~~~~~~~g~~~~~~~~~~-~ 131 (299)
....+++.|+|...+.+||.|||+| +||++.........+++.... .. +.++.... ..|......+. +
T Consensus 202 ~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 275 (429)
T TIGR00909 202 ALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSLIVVTLLYVLVAAVILGAVPWRQLAGS------TAPLSLVGYDLGQ 275 (429)
T ss_pred HHHHHHHhhHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHhcCcCHHHhCCC------CcHHHHHHHHhCc
Confidence 3567889999999999999999998 999665555444444433322 11 22221100 00100000000 0
Q ss_pred ccC---------cccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHhccHHHHHHH
Q psy16475 132 DKP---------EAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFTSDVFLLITY 202 (299)
Q Consensus 132 ~~~---------~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~ 202 (299)
... ....++.++.+...+|+++ +++|||.+|++|+|+|||+++|++|++++++++.++....+++.+.++
T Consensus 276 ~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~-~~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~l~~~ 354 (429)
T TIGR00909 276 GIGGLILTAGAVFSIASVMLAGIYGTSRVLF-AMSRDGLLPGSLSKVHPKTGTPHMSIIIFSLTAALLASLVPLEGLAEL 354 (429)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCCcHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 000 1224788889999999999 999999999999999999999999999999999988777789999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccCCCCCCCccchhH--HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhhhheeee
Q psy16475 203 SSFVESAFIMISVCGILYLRYTQPDMHRPIKVSLW--VPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLI 277 (299)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (299)
.+....+.|.+.+++.+++|+|+||.+||||.+.. .+.+.+..+.++... ..+.+....+++.++|.++|.+
T Consensus 355 ~~~~~~~~y~~~~~a~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~y~~ 428 (429)
T TIGR00909 355 TSIGTLIAFAAVNVAVIILRRRRPDIQRAFRCPLVPVLPVLVVSYCIYLLLN---LGPGTTVWFLVWMLLGSVFYFI 428 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcchHHHHHHHHHHHHHHHH---ccHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999998874 444444444444432 3456777788888899887753
No 9
>PRK15049 L-asparagine permease; Provisional
Probab=99.89 E-value=1.4e-22 Score=189.48 Aligned_cols=212 Identities=14% Similarity=0.109 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHhh---cchHHHHHHHHHHHhccceeeeeeeeccc-
Q psy16475 59 FIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPIL---EAPREVGMAVLITLSGVPVYLIGVKWRDK- 133 (299)
Q Consensus 59 ~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~- 133 (299)
...+++.|+|...+.+||.|||+| +||++.........+++...+. ..|.+... ..+.|+.......+..
T Consensus 228 ~~~faf~G~e~i~~~aeE~knP~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~-----~~~sP~~~~~~~~g~~~ 302 (499)
T PRK15049 228 GVVFAFASIEMVGTAAGECKDPQTMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQ-----AGQSPFVTFFSKLGVPY 302 (499)
T ss_pred HHHHHHhhHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecchhccC-----cCCCHHHHHHHHcCchh
Confidence 467899999999999999999999 9996654443333333222211 11111100 0011111100010100
Q ss_pred ---------CcccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHh------ccHHH
Q psy16475 134 ---------PEAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFT------SDVFL 198 (299)
Q Consensus 134 ---------~~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~------~~~~~ 198 (299)
.....++.|+.+++.+|++| +|||||.+|++|+|+| |+++|.+|++++++++++..+. ..++.
T Consensus 303 ~~~ii~~~ilia~~ss~ns~~~~~sR~l~-a~Ardg~lP~~f~kv~-k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~ 380 (499)
T PRK15049 303 IGSIMNIVVLTAALSSLNSGLYCTGRILR-SMAMGGSAPSFMAKMS-RQHVPYAGILATLVVYVVGVFLNYLVPSRVFEI 380 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCcCHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 01224788999999999999 9999999999999999 8899999999998886653221 24888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhccCCC---CCCCccchhH--HHHHHHHHHHHHHHhhcccch---HHHHHHHHHHHh
Q psy16475 199 LITYSSFVESAFIMISVCGILYLRYTQPD---MHRPIKVSLW--VPISFVLICVFLVVTPILEAP---REVGMAVLITLS 270 (299)
Q Consensus 199 l~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 270 (299)
+.+++++..++.|.+++++++++||+.++ .++|||.|.+ .+++.+++++++++...+++| .......++.++
T Consensus 381 l~~~~~~~~li~y~~~~~~~l~~R~~~~~~~~~~~pf~~~~~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (499)
T PRK15049 381 VLNFASLGIIASWAFIIVCQMRLRKAIKEGKAADVSFKLPGAPFTSWLTLLFLLSVLVLMAFDYPNGTYTIAALPIIGIL 460 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCcccCccHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH
Confidence 99999999999999999999999987443 3568999873 666666666666655555433 333344444444
Q ss_pred hhheeee
Q psy16475 271 GVPVYLI 277 (299)
Q Consensus 271 ~~~~~~~ 277 (299)
..+.|+.
T Consensus 461 ~~~~~~~ 467 (499)
T PRK15049 461 LVIGWFG 467 (499)
T ss_pred HHHHHHH
Confidence 4444544
No 10
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.88 E-value=2.5e-22 Score=187.03 Aligned_cols=216 Identities=15% Similarity=0.210 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHh----hcchHHHHHHHHHHHhccceeeeeeeecc
Q psy16475 58 AFIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPI----LEAPREVGMAVLITLSGVPVYLIGVKWRD 132 (299)
Q Consensus 58 ~~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 132 (299)
....++|.|+|...+.+||.|||+| +||++.........+++...+ ..+.++... ...|.....++.+.
T Consensus 213 ~~~~faf~G~e~~~~~a~E~knP~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~------~~~p~~~~~~~~g~ 286 (471)
T PRK11387 213 VAVNFAFSGTELIGIAAGETENPAKVIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGV------EKSPFVLVFEKVGI 286 (471)
T ss_pred HHHHHHHcCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecCccccCc------cCChHHHHHHHcCC
Confidence 3467899999999999999999999 999655444433333332222 111111100 00111000011111
Q ss_pred c-C---------cccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHh------ccH
Q psy16475 133 K-P---------EAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFT------SDV 196 (299)
Q Consensus 133 ~-~---------~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~------~~~ 196 (299)
. . ....++.|+.+++.+|+++ +|||||.+|++|+|+| |+++|++|++++.+++++..+. ..+
T Consensus 287 ~~~~~ii~~~~~~s~~~~~~~~~~~~sR~l~-a~ardg~lP~~f~~~~-~~~~P~~Ail~~~~~~~l~~~~~~~~~~~~~ 364 (471)
T PRK11387 287 PYAADIFNFVILTAILSAANSGLYASGRMLW-SLSNEGTLPACFARLT-KRGIPLTALSVSMLGGLLALFSSVVAPDTVF 364 (471)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-HHHhcCCcCHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 0 0 1224688889999999999 9999999999999999 7899999999887766544332 125
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCC-----CCCCccchh--HHHHHHHHHHHHHHHhhcccch--HHHHHHHHH
Q psy16475 197 FLLITYSSFVESAFIMISVCGILYLRYTQPD-----MHRPIKVSL--WVPISFVLICVFLVVTPILEAP--REVGMAVLI 267 (299)
Q Consensus 197 ~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 267 (299)
+.+.+++++...+.|...+++++++||++|+ .++|||.|. +.++++++.+++++.....+.+ .....+..+
T Consensus 365 ~~l~~l~~~~~li~y~~~~~~~i~lr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (471)
T PRK11387 365 VALSAISGFAVVAVWLSICASHFMFRRRHLRDGKALSELAYRAPWYPLTPILGFVLCLLACVGLAFDPSQRIALWCGIPF 444 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 6688889999999999999999999988753 246899887 4788888777776665433322 234567777
Q ss_pred HHhhhheeeeeeee
Q psy16475 268 TLSGVPVYLIGVKW 281 (299)
Q Consensus 268 ~~~~~~~~~~~~~~ 281 (299)
++++.+.|++++|+
T Consensus 445 ~~~~~~~~~~~~~~ 458 (471)
T PRK11387 445 VALCYGAYYLTQRL 458 (471)
T ss_pred HHHHHHHHHHhccc
Confidence 77888888776554
No 11
>PRK10836 lysine transporter; Provisional
Probab=99.88 E-value=5e-22 Score=185.76 Aligned_cols=195 Identities=16% Similarity=0.157 Sum_probs=135.5
Q ss_pred HHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHh----hcc--hHHHHHHHHHHHhccceeeeeeeecc
Q psy16475 60 IMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPI----LEA--PREVGMAVLITLSGVPVYLIGVKWRD 132 (299)
Q Consensus 60 ~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~----~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~ 132 (299)
..++|.|+|...+.+||.|||+| +||++.........+++.... ..+ +.+..........+.|+.......+.
T Consensus 214 ~~faf~G~e~~~~~a~E~knP~r~iPrAi~~~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~sp~~~~~~~~g~ 293 (489)
T PRK10836 214 VGFSFQGTELIGIAAGESEDPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAGL 293 (489)
T ss_pred HHHHHccHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHheecCCCChhhhccccccccCCcHHHHHHHcCC
Confidence 45899999999999999999999 999665444444444333221 111 11111000000011121111111110
Q ss_pred cC----------cccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHhc------cH
Q psy16475 133 KP----------EAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFTS------DV 196 (299)
Q Consensus 133 ~~----------~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~------~~ 196 (299)
.. ....++.|+.+++.+|++| +|||||.+|++|+|+| |+++|++|++++++++.+..+.. .+
T Consensus 294 ~~~~~ii~~~il~a~~~~~n~~~~~~sR~l~-a~Ardg~lP~~~~kv~-~~~~P~~All~~~~~~~l~~l~~~~~~~~~~ 371 (489)
T PRK10836 294 LSAAAVMNAVILTAVLSAGNSGMYASTRMLY-TLACDGKAPRIFAKLS-RGGVPRNALYATTVIAGLCFLTSMFGNQTVY 371 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHccCHHHHH
Confidence 00 1235788999999999999 9999999999999999 78999999999999988765542 25
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcc----CCCCC-CCccchh--HHHHHHHHHHHHHHHhhccc
Q psy16475 197 FLLITYSSFVESAFIMISVCGILYLRYT----QPDMH-RPIKVSL--WVPISFVLICVFLVVTPILE 256 (299)
Q Consensus 197 ~~l~~~~~~~~~~~~~~~~~~~~~~r~~----~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 256 (299)
+.+.++++....+.|...+++++++||+ +|+.+ +|||.|. +.|+++++.+++++.....+
T Consensus 372 ~~l~~~~~~~~~~~y~~~~~a~l~~R~~~~~~~~~~~~~p~~~p~~p~~~~~~~~~~~~~~~~~~~~ 438 (489)
T PRK10836 372 LWLLNTSGMTGFIAWLGIAISHYRFRRGYVLQGHDLNDLPYRSGFFPLGPIFAFVLCLIITLGQNYE 438 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCcCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999986 45654 7999988 47888888888877754443
No 12
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.87 E-value=9e-22 Score=182.12 Aligned_cols=218 Identities=16% Similarity=0.221 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHh----hcchHHHHHHHHHHHhccceeeeeee-ecc
Q psy16475 59 FIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPI----LEAPREVGMAVLITLSGVPVYLIGVK-WRD 132 (299)
Q Consensus 59 ~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~ 132 (299)
...+++.|+|...+.+||.|||+| +||++..........++.... ..++++... .+.|....... .+.
T Consensus 199 ~~~~af~G~e~~~~~aeE~k~P~r~iPrai~~s~~i~~v~Y~l~~~~~~~~~~~~~l~~------~~~p~~~~~~~~~g~ 272 (445)
T PRK10644 199 VTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSSTAIMGMIPNAALRV------SASPFGDAARMALGD 272 (445)
T ss_pred HHHHHHHhHHHHHHHHHHhhCcccchhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhc------CCChHHHHHHHHhhh
Confidence 467899999999999999999999 999655544443333332222 122222110 01111000000 011
Q ss_pred cC---------cccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHh-------ccH
Q psy16475 133 KP---------EAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFT-------SDV 196 (299)
Q Consensus 133 ~~---------~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~-------~~~ 196 (299)
.. ....++.++.+...+|..+ +|+|||.+|++|+|+| |+++|++|++++++++.++.+. ..+
T Consensus 273 ~~~~~v~~~~~~s~~~~~~~~~~~~sr~~~-a~ardg~lP~~~~~v~-~~~tP~~Ai~~~~~i~~l~~l~~~~~~~~~~~ 350 (445)
T PRK10644 273 TAGAIVSFCAAAGCLGSLGGWTLLAGQTAK-AAADDGLFPPIFARVN-KAGTPVAGLLIVGVLMTIFQLSSISPNASKEF 350 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCccHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHHccchHHHH
Confidence 11 1113466677888999999 9999999999999999 5799999999999998876543 148
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCccchhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhhhheee
Q psy16475 197 FLLITYSSFVESAFIMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYL 276 (299)
Q Consensus 197 ~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (299)
+.+.++++...++.|.++..+.+++|||+++.++|+ ....+.++++.++++.+.. ++.....+.++++++.++|+
T Consensus 351 ~~l~~~~~~~~li~y~~~~~~~~~l~~~~~~~~~p~--~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~y~ 425 (445)
T PRK10644 351 GLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPA--YLAVTLIAFVYCIWAVVGS---GAKEVMWSFVTLMVITAFYA 425 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccc--hhHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999998887545553 2346778787887777543 33345555566777777776
Q ss_pred eeeee-cCCchhhh
Q psy16475 277 IGVKW-RDKPEAFT 289 (299)
Q Consensus 277 ~~~~~-~~~~~~~~ 289 (299)
+.++| +++|-..|
T Consensus 426 ~~~~~~~~~~~~~~ 439 (445)
T PRK10644 426 LNYNRLHKNPYPLD 439 (445)
T ss_pred HHHHhhcCCCCccC
Confidence 65554 44554333
No 13
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=99.87 E-value=1e-21 Score=183.55 Aligned_cols=220 Identities=11% Similarity=0.004 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHH----HHHHHHHhhc-chHHHHHHHHHHHhccceeeeeee-ec
Q psy16475 59 FIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLIC----VFLVVTPILE-APREVGMAVLITLSGVPVYLIGVK-WR 131 (299)
Q Consensus 59 ~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~----~~~i~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~-~~ 131 (299)
...+++.|+|...+.+||.|||+| +||++.....+.. .+.+...... ++++.... ..+.|+...... .+
T Consensus 225 ~~~fsf~G~e~~~~~a~E~knP~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~p~~~~~~~~~g 300 (482)
T TIGR00907 225 NPAWSMTGYDGTAHMAEEIENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISS----TTGQPIAQIFYNALG 300 (482)
T ss_pred hhHHHhcCcchhhHHHHhcCChhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhcC----CCCChHHHHHHHHhC
Confidence 345799999999999999999999 9996554332221 1222222222 22221110 011111000000 01
Q ss_pred c-cC---------cccccccchhhhhhhhhhhccccccCccc--hhhhhcCCCCCCchhHHHHHHHHHHHHHHh-----c
Q psy16475 132 D-KP---------EAFTRSFNALTYFVQKLMCFVGARYGHFP--AMLSHINISRFTPTPSLVFLNILSLFMLFT-----S 194 (299)
Q Consensus 132 ~-~~---------~~~~~~~~~~~~~~sR~~~~~~a~dg~lP--~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~-----~ 194 (299)
. .. ....++.++.+.+.+|+++ +|+|||.+| ++|+|+|||+++|++|++++++++.++.+. .
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~-a~ardg~lP~~~~f~~v~~~~~~P~~ai~~~~~i~~~~~~~~~~~~~ 379 (482)
T TIGR00907 301 NKAGAIFLLCLILVTSFFCAITCMTANSRMIY-AFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWIILIGLLGLGSST 379 (482)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCcCchHhhceeCCCCCCcHHHHHHHHHHHHHHHHHHhhhHH
Confidence 1 00 1123678889999999999 999999999 999999988899999999999998776544 3
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCccchhH---HHHHHHHHHHHHHHh---hcc------cchHHHH
Q psy16475 195 DVFLLITYSSFVESAFIMISVCGILYLRYTQPDMHRPIKVSLW---VPISFVLICVFLVVT---PIL------EAPREVG 262 (299)
Q Consensus 195 ~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---~~~------~~~~~~~ 262 (299)
+++.+.+++++...+.|.+...+++++||+ ++.++|||.+.+ ...+.++.+.+..+. |.. ++++...
T Consensus 380 ~f~~l~~~~~~~~~i~y~~~~~~~l~~~~~-~~~~~~f~lg~~~~~~~~~~~~~~~~~~v~~~~P~~~p~~~~~~ny~~~ 458 (482)
T TIGR00907 380 AFQAIFSVCTVALDVSYVIPIICKLAKGRN-TIAPGPFWLGKYGFFVNAVAVAWTVFSSVLFSFPPVLPVTPENMNYAVV 458 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCCCCCcCCcchHHHHHHHHHHHHHHHhheeCCCCCCCCcccCChHhH
Confidence 588999999999999999999888765554 556789998543 233333333333222 211 1124555
Q ss_pred HHHHHHHhhhheeeeeeeecCC
Q psy16475 263 MAVLITLSGVPVYLIGVKWRDK 284 (299)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~ 284 (299)
+..+..+++.++|....||+.+
T Consensus 459 ~~~~~~~~~~~~~~~~~r~~~~ 480 (482)
T TIGR00907 459 VFAGVLAISLVYWKYKGRKEFT 480 (482)
T ss_pred HHHHHHHHHHHHheEeceeecc
Confidence 5566677777777666555544
No 14
>PRK10746 putative transport protein YifK; Provisional
Probab=99.87 E-value=6e-22 Score=183.70 Aligned_cols=219 Identities=12% Similarity=0.127 Sum_probs=140.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHhh----cchHHHH-----HHHHHHHhccceeeee
Q psy16475 58 AFIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPIL----EAPREVG-----MAVLITLSGVPVYLIG 127 (299)
Q Consensus 58 ~~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~~----~~~~~~~-----~~~~~~~~g~~~~~~~ 127 (299)
....+++.|+|...+.+||.|||+| +|+++.........+++...+. .++++.. ........|.+.....
T Consensus 207 ~~~~faf~G~e~v~~~a~E~knP~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~~~i 286 (461)
T PRK10746 207 CIVVASYQGVELIGITAGEAKNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGI 286 (461)
T ss_pred HHHHHHhcCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhHHHH
Confidence 3456789999999999999999999 9996654433333333322221 1111110 0000011111100000
Q ss_pred eeecccCcccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHH---H-h----ccHHHH
Q psy16475 128 VKWRDKPEAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFML---F-T----SDVFLL 199 (299)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~---~-~----~~~~~l 199 (299)
..........++.|+.+++.||+++ +|||||.+|++|+|+| |+++|++|++++.+..++.. . . ..++.+
T Consensus 287 -~~~~il~a~~s~~n~~~~~~sR~l~-~~a~~g~lP~~~~~~~-~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l 363 (461)
T PRK10746 287 -INFVVLTAALSGCNSGMYSCGRMLY-ALAKNRQLPAAMAKVS-RHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYV 363 (461)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCcCHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence 0000001235788999999999999 9999999999999999 88999999998865543311 1 1 137789
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCC--CCCccchh--HHHHHHHHHHHHHHHhhcccch--HHHHHHHHHHHhhhh
Q psy16475 200 ITYSSFVESAFIMISVCGILYLRYTQPDM--HRPIKVSL--WVPISFVLICVFLVVTPILEAP--REVGMAVLITLSGVP 273 (299)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 273 (299)
.++++....+.|...+++++++||++|+. ++|||.|. +.+.+.+++++.+++.....+. .....+..++.++.+
T Consensus 364 ~~~~~~~~~i~w~~i~~~~i~~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (461)
T PRK10746 364 YSASVLPGMVPWFVILISQLRFRRAHKAAIASHPFRSILFPWANYLTMAFLICVLIGMYFNEDTRMSLFVGIIFLLAVTL 443 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcCCCccHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998753 56899776 3555555555555444433221 344555566666666
Q ss_pred eeeeee
Q psy16475 274 VYLIGV 279 (299)
Q Consensus 274 ~~~~~~ 279 (299)
.|..++
T Consensus 444 ~y~~~~ 449 (461)
T PRK10746 444 IYKVFG 449 (461)
T ss_pred HHHHHH
Confidence 666543
No 15
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.87 E-value=7.9e-22 Score=182.33 Aligned_cols=220 Identities=15% Similarity=0.186 Sum_probs=148.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHhh---cch-HH--H----HHHHHHHHhccceeee
Q psy16475 58 AFIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPIL---EAP-RE--V----GMAVLITLSGVPVYLI 126 (299)
Q Consensus 58 ~~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~~---~~~-~~--~----~~~~~~~~~g~~~~~~ 126 (299)
....++|.|+|...+.+||.|||+| +||++.........+++..... ..| ++ . .........+.+....
T Consensus 188 ~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~ 267 (446)
T PRK10197 188 LITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNIPHAKL 267 (446)
T ss_pred HHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHheecCcCcccccccCcHHHHHHHcCchHHHH
Confidence 3567899999999999999999999 9996544333333333322211 111 10 0 0001111111110000
Q ss_pred eeeecccCcccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHh------ccHHHHH
Q psy16475 127 GVKWRDKPEAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFT------SDVFLLI 200 (299)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~------~~~~~l~ 200 (299)
. ..........++.|+.+++.+|++| ++||||.+|++|+|+| |+++|++|+++++.++++..+. ..++.+.
T Consensus 268 i-i~~~i~~~~~~~~n~~~~~~sR~l~-a~ardg~lP~~~~~~~-~~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~ 344 (446)
T PRK10197 268 I-MDCVILLSVTSCLNSALYTASRMLY-SLSRRGDAPAVMGKIN-RSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLI 344 (446)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCcCHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 0 0000001234789999999999999 9999999999999999 8899999999998887765443 2488899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc--CCCCCCCccchh--HHHHHHHHHHHHHHHhhccc-chHHHHHHHHHHHhhhhee
Q psy16475 201 TYSSFVESAFIMISVCGILYLRYT--QPDMHRPIKVSL--WVPISFVLICVFLVVTPILE-APREVGMAVLITLSGVPVY 275 (299)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~r~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 275 (299)
++.+....+.|.++..+++++||+ +++.+.|+|.|. +.+.+.++.+.++......+ +++....+.++.+++...|
T Consensus 345 ~~~~~~~li~y~~~~~a~i~lr~~~~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (446)
T PRK10197 345 DSSGAIALLVYLVIAVSQLRMRKILRAEGSEIRLRMWLYPWLTWLVIGFITFVLVVMLFRPAQQLEVISTGLLAIGIICT 424 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCCcchHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999986 333456888876 36666666666555544433 4456667788888888888
Q ss_pred e-eeee
Q psy16475 276 L-IGVK 280 (299)
Q Consensus 276 ~-~~~~ 280 (299)
+ ..+|
T Consensus 425 ~~~~~~ 430 (446)
T PRK10197 425 VPIMAR 430 (446)
T ss_pred hHHHhh
Confidence 7 4433
No 16
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.87 E-value=7.3e-22 Score=184.38 Aligned_cols=193 Identities=14% Similarity=0.137 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHhh----cc--hHHHHHHHH-HHHhccceeeeeee
Q psy16475 58 AFIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPIL----EA--PREVGMAVL-ITLSGVPVYLIGVK 129 (299)
Q Consensus 58 ~~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~~----~~--~~~~~~~~~-~~~~g~~~~~~~~~ 129 (299)
....+++.|+|...+.+||.|||+| +||++.........+++...+. .+ +.+...+.. ....+.|+....+.
T Consensus 204 ~~~~~af~G~e~~~~~a~E~knP~r~iPrai~~~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~~~~~p~~~~~~~ 283 (478)
T TIGR00913 204 VTAAFSFGGTELVALTAGEAANPRKSIPRAAKRTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFVIAIQN 283 (478)
T ss_pred HHHHhhhccHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHheeeccCCChhhcccccCCCcCCCcHHHHHHH
Confidence 3456899999999999999999999 9996655554444433332221 11 111111000 00011222111111
Q ss_pred ecccC----------cccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHh------
Q psy16475 130 WRDKP----------EAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFT------ 193 (299)
Q Consensus 130 ~~~~~----------~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~------ 193 (299)
.+... ....++.|+.+++.+|+++ +++|||.+|++|+|+| |+++|++|++++++++++..+.
T Consensus 284 ~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~-a~ardg~lP~~f~k~~-~~~~P~~Ai~~~~~~~~l~~l~~~~~~~ 361 (478)
T TIGR00913 284 HGIKVLPHIFNAVILISVLSAANSSLYASSRTLY-ALAHQGLAPKIFAYVD-RRGVPYVAVIVSSLFGLLAFLAVSKKEA 361 (478)
T ss_pred cCCchHhHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHHhCCcccHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHccChH
Confidence 11111 1224788999999999999 9999999999999999 7899999999999988754432
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-----CCCCCCCccchh--HHHHHHHHHHHHHHHh
Q psy16475 194 SDVFLLITYSSFVESAFIMISVCGILYLRYT-----QPDMHRPIKVSL--WVPISFVLICVFLVVT 252 (299)
Q Consensus 194 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~-----~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 252 (299)
..++.+.++++....+.|.+.+++.+++||+ +++.++|||.|. +.+++.++.++++...
T Consensus 362 ~~~~~l~~~~~~~~~i~y~~~~~~~i~~r~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 427 (478)
T TIGR00913 362 EVFTWLLNISGLSGFFTWMCICLSHIRFRKAMKAQGRSLDELPYKSQTGPYGSYYALFFNILILIA 427 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCccCCCcchHHHHHHHHHHHHHHH
Confidence 1378899999999999999999999999875 234468999876 3555555555554443
No 17
>PRK10249 phenylalanine transporter; Provisional
Probab=99.86 E-value=2.8e-21 Score=179.24 Aligned_cols=214 Identities=15% Similarity=0.115 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHh----hcchHHHHHHHHHHHhccceeeeeeee
Q psy16475 56 ESAFIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPI----LEAPREVGMAVLITLSGVPVYLIGVKW 130 (299)
Q Consensus 56 ~~~~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~ 130 (299)
......+++.|+|...+.+||.|||+| +||++..........++.... ..++.+... .+.|+.......
T Consensus 214 ~~~~~~~af~G~e~~~~~a~E~~~P~k~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~------~~~p~~~~~~~~ 287 (458)
T PRK10249 214 SLAVIMFSFGGLELIGITAAEARDPEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKS------NSSPFVMIFHNL 287 (458)
T ss_pred HHHHHHHHHcCHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHheeccccccCc------cCCcHHHHHHHc
Confidence 344567899999999999999999999 999655544433333322211 111111100 011110000000
Q ss_pred cc-cC---------cccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHh------c
Q psy16475 131 RD-KP---------EAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFT------S 194 (299)
Q Consensus 131 ~~-~~---------~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~------~ 194 (299)
.. .. ....++.|+.+++.+|++| +++|||.+|++|+|+| |+++|++|++++++++.+..+. .
T Consensus 288 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~sR~l~-a~ardg~lP~~~~kv~-~~~~P~~All~~~~i~~l~~l~~~~~~~~ 365 (458)
T PRK10249 288 DSNVVASALNFVILVASLSVYNSGVYSNSRMLF-GLSVQGNAPKFLTRVS-RRGVPINSLMLSGAITSLVVLINYLLPQK 365 (458)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCcCHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhChHH
Confidence 00 00 1224688888999999999 9999999999999999 7899999999999998765443 2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhhcc--CCCCCCCccchhH--HHHHHHHHHHHHHHhhccc--chHHHHHHHHHH
Q psy16475 195 DVFLLITYSSFVESAFIMISVCGILYLRYT--QPDMHRPIKVSLW--VPISFVLICVFLVVTPILE--APREVGMAVLIT 268 (299)
Q Consensus 195 ~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 268 (299)
.++.+.+.++....+.|.+.+.+++++||+ +++.++|||.|.+ .+++.++.+.+.++..... +.+.......+.
T Consensus 366 ~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~p~~~~~~p~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 445 (458)
T PRK10249 366 AFGLLMALVVATLLLNWIMICLAHLRFRAAMRRQGRETQFKALLYPFGNYLCIAFLGMILLLMCTMDDMRLSAILLPVWI 445 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCCccHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence 478899999999999999999999999863 4555689998763 4555555554444433322 223444444444
Q ss_pred Hhhhheeee
Q psy16475 269 LSGVPVYLI 277 (299)
Q Consensus 269 ~~~~~~~~~ 277 (299)
++..+.|..
T Consensus 446 ~~~~~~~~~ 454 (458)
T PRK10249 446 VFLFVAFKT 454 (458)
T ss_pred HHHHHHHHh
Confidence 444444544
No 18
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=99.86 E-value=3.3e-21 Score=180.48 Aligned_cols=193 Identities=12% Similarity=0.153 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHH--HH--hhcchHHHHHHHH-HHHhccceeeeeee--e
Q psy16475 59 FIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVV--TP--ILEAPREVGMAVL-ITLSGVPVYLIGVK--W 130 (299)
Q Consensus 59 ~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~--~~--~~~~~~~~~~~~~-~~~~g~~~~~~~~~--~ 130 (299)
...+++.|+|...+.+||.|||+| +||++....++....+.. .. ...++++...... .............. +
T Consensus 202 ~~~faf~G~E~~a~~a~E~knP~r~~PrAi~~~~i~~~~l~~l~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (507)
T TIGR00910 202 AFIGAYMGVEASASHINELENPGRDYPLAMILLMIAAICLDAIGGFSIAAVIPGKEINLSAGVIQTFQTLILHFAHEIEW 281 (507)
T ss_pred HHHHHHhcHHHHHHHHHHccCCcccccHHHHHHHHHHHHHHHHHHHHHheecChhhcccchHHHHHHHHHHHhhccchhH
Confidence 456789999999999999999999 999665544433332222 11 1122222111100 00000000000000 0
Q ss_pred cc-cC-----cccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHh---------cc
Q psy16475 131 RD-KP-----EAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFT---------SD 195 (299)
Q Consensus 131 ~~-~~-----~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~---------~~ 195 (299)
.. .. ....++.++.+.+.+|.++ +++|||.+|++|+|+| |+++|++|++++++++.++.+. ..
T Consensus 282 ~~~ii~~~~~~~~l~~~~~~i~~~sR~l~-~~ardg~lP~~~~k~n-k~~~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~ 359 (507)
T TIGR00910 282 LVKVIAALIAFGVLAEIASWIVGPSRGMF-AAAQKGLLPAAFAKMN-KHEVPVPLVIIQGIITSIAGAILTFGGGGNNLS 359 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccCCcCHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHHcCCchHHHH
Confidence 00 00 1123567888999999999 9999999999999999 8899999999999998764322 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCccchh------HHHHHHHHHHHHHHHhh
Q psy16475 196 VFLLITYSSFVESAFIMISVCGILYLRYTQPDMHRPIKVSL------WVPISFVLICVFLVVTP 253 (299)
Q Consensus 196 ~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 253 (299)
+..+.+.++....+.|++..++.+++|+|+|+.+||||.|. ....+.++.+++..+..
T Consensus 360 f~~l~~~~~~~~~i~Y~l~~~a~i~lr~k~p~~~rpf~~pg~~~~~~i~~~~~~~~~~~~~v~~ 423 (507)
T TIGR00910 360 FLIAIALTVVIYLCAYFLFFIGYFVLILKHPDLKRTFNIPGGIGGKLIIAGIGFLLSIFAFFIS 423 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEecCCccchhhHHHHHHHHHHHHHhee
Confidence 55677888999999999999999999999999999999864 24455555555554443
No 19
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.86 E-value=1.9e-21 Score=180.41 Aligned_cols=221 Identities=16% Similarity=0.210 Sum_probs=138.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHh--h-c---chHHHHH----HHHHHHhccceee
Q psy16475 57 SAFIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPI--L-E---APREVGM----AVLITLSGVPVYL 125 (299)
Q Consensus 57 ~~~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~--~-~---~~~~~~~----~~~~~~~g~~~~~ 125 (299)
.....+++.|+|...+.+||.|||+| +||++.........+++.... . . ++.+... .......|.+.-.
T Consensus 207 ~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~~~~~~~g~~~~~ 286 (452)
T TIGR01773 207 ILVTMFSFMGTEIVTIAAAESSNPIKSITRATNSVIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVLELLGIPHAK 286 (452)
T ss_pred HHHHHHHhccHHHHhHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHHHHHHHcCChhHH
Confidence 34567899999999999999999999 999654333222222222211 1 1 1111100 0000011100000
Q ss_pred eeeeecccCcccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHh------ccHHHH
Q psy16475 126 IGVKWRDKPEAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFT------SDVFLL 199 (299)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~------~~~~~l 199 (299)
.. ..........++.|+.+++.+|.++ +|||||.+|++|+|+| |+++|++|++++++++++..+. ..++.+
T Consensus 287 ~i-i~~~~~~~~~~~~~~~~~~~sR~~~-a~ardg~lP~~~~~v~-~~~~P~~Ail~~~~~~~~~~l~~~~~~~~~f~~l 363 (452)
T TIGR01773 287 LI-MDFVVLTAVLSCLNSALYTTSRMLY-SLAERGDAPRVFMKLN-KKGVPVQAVLASTFFSFLTVVVNYFAPDKVFLFL 363 (452)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 00 0000001234788999999999999 9999999999999999 7899999999999998876543 126778
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCcc--chh--HHHHHHHHHHHHHHHhhc-ccc-hHHHHHHHHHHHhhhh
Q psy16475 200 ITYSSFVESAFIMISVCGILYLRYTQPDMHRPIK--VSL--WVPISFVLICVFLVVTPI-LEA-PREVGMAVLITLSGVP 273 (299)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~ 273 (299)
.+..+...++.|.+..++++++|+++|+.++||+ .+. +.++..+..+.+.+.... ..+ ....+....+.+++..
T Consensus 364 ~~~~~~~~~~~y~~~~~~~i~~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 443 (452)
T TIGR01773 364 VNSSGAIALLVYLVIAVSQLRMRKKLKANGEAIKIRMWLYPWLTWLVIIFICGILVSMLFIPSMRDEVLLTGLLTIIVLC 443 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCCCccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHH
Confidence 8888988999999999999999998776666544 442 344444444444444432 222 2445555555666666
Q ss_pred eeeeeee
Q psy16475 274 VYLIGVK 280 (299)
Q Consensus 274 ~~~~~~~ 280 (299)
+|++.+|
T Consensus 444 ~y~~~~~ 450 (452)
T TIGR01773 444 SYLVFAR 450 (452)
T ss_pred HHHHhhc
Confidence 6665433
No 20
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=99.86 E-value=3e-21 Score=179.93 Aligned_cols=175 Identities=15% Similarity=0.213 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHH----hhcchHHHHHHHHH-HHhccceeeeeeeeccc
Q psy16475 60 IMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTP----ILEAPREVGMAVLI-TLSGVPVYLIGVKWRDK 133 (299)
Q Consensus 60 ~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~----~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~ 133 (299)
..++|.|+|.....+||.|||+| +||++..........++... ...++++...+... .................
T Consensus 203 ~~~af~G~e~~~~~a~E~knP~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 282 (474)
T TIGR03813 203 IFLFYAGMEMNAVHVKDVDNPDKNYPIAILIAALGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAGLSWLGP 282 (474)
T ss_pred HHHHHhchhHhHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHhccCHhhccccccHHHHHHHHHHHcCchHHHH
Confidence 45789999999999999999999 99966554444333333222 12222221110000 00000000000000000
Q ss_pred -C-----cccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHh--------ccHHHH
Q psy16475 134 -P-----EAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFT--------SDVFLL 199 (299)
Q Consensus 134 -~-----~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~--------~~~~~l 199 (299)
. ....++.++.+.+.+|.++ +++|||.+|++|+|+| |+++|++|++++++++.++.+. ..++.+
T Consensus 283 i~~~~~~~~~l~~~~~~~~~~sR~~~-a~ardg~lP~~~~kv~-k~~~P~~a~~~~~~~~~~l~~~~~~~~s~~~~f~~l 360 (474)
T TIGR03813 283 ILAFALAIGVLAGVVTWVAGPSSGML-AVAKAGYLPTFFQKTN-KNGMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQIL 360 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcCCCCHHHhccC-CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 0 0123566777788999999 9999999999999999 8999999999999876543321 236788
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCccchh
Q psy16475 200 ITYSSFVESAFIMISVCGILYLRYTQPDMHRPIKVSL 236 (299)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 236 (299)
.+.++....+.|.+..++++++|+|+|+.+||||.|.
T Consensus 361 ~~~~~~~~~i~y~~~~~a~i~lr~~~~~~~rpf~~p~ 397 (474)
T TIGR03813 361 SQLTVILYLVMYLLMFASAIYLRYSQPDRPRPYRIPG 397 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCeEecC
Confidence 8999999999999999999999998888899999864
No 21
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.85 E-value=5.1e-21 Score=178.31 Aligned_cols=219 Identities=15% Similarity=0.146 Sum_probs=149.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHh----hcchHHHHHHHHHHHhccc-eeeeeee-ec
Q psy16475 59 FIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPI----LEAPREVGMAVLITLSGVP-VYLIGVK-WR 131 (299)
Q Consensus 59 ~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~----~~~~~~~~~~~~~~~~g~~-~~~~~~~-~~ 131 (299)
...+++.|+|...+.+||.|| +| +||++.....+...+++.... ..++++... ...| ....... .+
T Consensus 207 ~~~~af~G~e~~~~~a~E~k~-~r~iPrai~~~~~i~~~~Yil~~~~~~~~~~~~~l~~------~~~p~~~~~~~~~~g 279 (473)
T TIGR00905 207 VTLWVFIGIEGAVVSSGRAKN-KSDVGKATVLGTLGALVIYILITLLSLGVLPQQELAN------LPNPSMAAVLEMIVG 279 (473)
T ss_pred HHHHHHHhHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhh------CCCchHHHHHHHHhC
Confidence 467899999999999999999 88 999665555444444433222 122222211 0111 0000000 01
Q ss_pred ccC---------cccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHh-----ccHH
Q psy16475 132 DKP---------EAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFT-----SDVF 197 (299)
Q Consensus 132 ~~~---------~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~-----~~~~ 197 (299)
... ....++.|+.+.+.+|.+| +|+|||.+|++|+|+|+ +++|++|++++++++.+..+. ++++
T Consensus 280 ~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~-amardg~lP~~~~~v~~-~~tP~~Ai~~~~~i~~~~~~~~~~~~~~~~ 357 (473)
T TIGR00905 280 KWGAVLISLGLIISVLGSLLSWTMLAAEVPF-SAAKDGLFPKIFGRVNK-NGAPSVALLLTNILIQLFLLLTLLTSSAYN 357 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCChhHHHHhhCc-cCCCHHHHHHHHHHHHHHHHHHHccHHHHH
Confidence 100 1224788999999999999 99999999999999995 599999999999988755432 4689
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCccchhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhhhheeee
Q psy16475 198 LLITYSSFVESAFIMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLI 277 (299)
Q Consensus 198 ~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (299)
.+.++.++..++.|.+++.+.+++|+|++..+++.+.+...++++.+.++++.+.. ++.....++++.++|.++|++
T Consensus 358 ~l~~~~~~~~~i~y~~~~~a~~~lr~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~y~~ 434 (473)
T TIGR00905 358 VLVSLAVVMILVPYLLSAAYLLKLAKVGTYPKIKNRKALIVGVIACVYSIWLLYAA---GLKYLLLGFILYAPGIIFYGR 434 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccccchHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998762111122223456777777776665543 445666788888899888887
Q ss_pred eeeecCCchhhhh
Q psy16475 278 GVKWRDKPEAFTR 290 (299)
Q Consensus 278 ~~~~~~~~~~~~~ 290 (299)
.+|+++++ .+++
T Consensus 435 ~~~~~~~~-~~~~ 446 (473)
T TIGR00905 435 ARKERGKH-VFNK 446 (473)
T ss_pred HHHhcCCC-CCCH
Confidence 76655544 3443
No 22
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.85 E-value=1.6e-21 Score=181.40 Aligned_cols=226 Identities=14% Similarity=0.127 Sum_probs=151.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCceehhHHHHHHHHHHHHHHHHHhh----cchHHHHH--HH-HHHHhccceeeeeeeec
Q psy16475 59 FIMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPIL----EAPREVGM--AV-LITLSGVPVYLIGVKWR 131 (299)
Q Consensus 59 ~~~~~~~g~~~~~~~~~E~~~p~kiP~~~~~~~~~~~~~~i~~~~~----~~~~~~~~--~~-~~~~~g~~~~~~~~~~~ 131 (299)
...+++.|+|...+.+||.||++.+|+++.........+++..... .++++... .. ...... .....+.
T Consensus 203 ~~~~~f~G~e~~~~~a~e~k~~k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~----~~~g~~~ 278 (468)
T TIGR03810 203 VTVWVFIGIEGASMLSARAEKRSDVGKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLE----HMVGTWG 278 (468)
T ss_pred HHHHHHHhHhHHhhhHhhccCcccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHH----HHcchHH
Confidence 4678899999999999999985339996655555444444333221 12222110 00 000000 0000000
Q ss_pred cc------CcccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHh-----ccHHHHH
Q psy16475 132 DK------PEAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFT-----SDVFLLI 200 (299)
Q Consensus 132 ~~------~~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~-----~~~~~l~ 200 (299)
.. .....++.|+.+...+|+++ +|+|||.+|++|+|+| |+++|++|++++.+++.+..+. ..++.+.
T Consensus 279 ~~~i~~~~~is~~~~~~~~~~~~sR~~~-a~ardg~lP~~f~k~~-~~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~ 356 (468)
T TIGR03810 279 AVLINIGLIISILGAWLSWTLLPAEIPL-LMAKDKLMPKYFGKEN-ANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAI 356 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCccHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 00 02235788999999999999 9999999999999999 7899999999998887655432 3588899
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCC-CCCCCccchhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhhhheeeeee
Q psy16475 201 TYSSFVESAFIMISVCGILYLRYTQP-DMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLIGV 279 (299)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (299)
++++....+.|.+++++++++|+|++ +.+++++ ...+.+..+++++..+.. .......+.++.+.|.++|++.+
T Consensus 357 ~~~~~~~li~y~~~~~~~~~l~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~y~~~~ 431 (468)
T TIGR03810 357 SLATSAILVPYLWSAAYQVKLSWRGGQERGRRKQ--LLIGLVALLYAVWLIYAA---GLKYLLLSAILYAPGIYFYARAR 431 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhh--HHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999987763 2233332 345666666666666644 34577788888899999987755
Q ss_pred eecCCchhhhhcccceE
Q psy16475 280 KWRDKPEAFTRSFSKFI 296 (299)
Q Consensus 280 ~~~~~~~~~~~~~~~~~ 296 (299)
|++ +.+.+++-|+.+.
T Consensus 432 ~~~-~~~~~~~~~~~~~ 447 (468)
T TIGR03810 432 KEK-GGPVFTKGELLIF 447 (468)
T ss_pred Hhc-CCCCCCHHHHHHH
Confidence 544 3445665555443
No 23
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.85 E-value=3.1e-21 Score=179.07 Aligned_cols=217 Identities=15% Similarity=0.161 Sum_probs=140.8
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHhh----cchHHHH-----HHHHHHHhccceeeee
Q psy16475 58 AFIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPIL----EAPREVG-----MAVLITLSGVPVYLIG 127 (299)
Q Consensus 58 ~~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~~----~~~~~~~-----~~~~~~~~g~~~~~~~ 127 (299)
....+++.|+|...+.+||.|||+| +|+++.........+++...+. .+.++.. ........|.+. .
T Consensus 206 ~~~~fsf~G~e~~~~~a~E~knP~k~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~i~~~~~p~~~~~~~~g~~~---~ 282 (457)
T PRK10580 206 QMVMFAYGGIEIIGITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQHMGITF---A 282 (457)
T ss_pred HHHHHHHhCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecccCCCCccCChHHHHHHHcCChh---H
Confidence 3457899999999999999999999 9996554433333333222221 1111110 000000111100 0
Q ss_pred eeeccc--CcccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHh------ccHHHH
Q psy16475 128 VKWRDK--PEAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFT------SDVFLL 199 (299)
Q Consensus 128 ~~~~~~--~~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~------~~~~~l 199 (299)
...-.. .....++.|+.+...+|+++ +|+|||.+|++|+|+| |+++|++|++++++++++.... ..++.+
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~sR~~~-~~ardg~lP~~~~kv~-~~~~P~~Ai~~~~~~~~~~~~~~~~~~~~~~~~l 360 (457)
T PRK10580 283 ASILNFVVLTASLSAINSDVFGVGRMLH-GMAEQGSAPKIFSKTS-RRGIPWVTVLVMTTALLFAVYLNYIMPENVFLVI 360 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 000000 01224678888999999999 9999999999999999 6899999999998765543222 237789
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhccCCCC---CCCccchh--HHHHHHHHHHHHHHHhh-ccc-chHHHHHHHHHHHhhh
Q psy16475 200 ITYSSFVESAFIMISVCGILYLRYTQPDM---HRPIKVSL--WVPISFVLICVFLVVTP-ILE-APREVGMAVLITLSGV 272 (299)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~ 272 (299)
.+++++...+.|.+.+.+++++||+++++ ++|||.|. +.+.+.+.++++++... ..+ .+....++..+++++.
T Consensus 361 ~~~~~~~~~~~y~~~~~~~~~lr~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 440 (457)
T PRK10580 361 ASLATFATVWVWIMILLSQIAFRRRLPPEEVKALKFKVPGGVATTIGGLIFLVFIIGLIGYHPDTRISLYVGFAWIVLLL 440 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccCCccHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999875332 34788875 35666666665555433 112 2345567777777887
Q ss_pred heeeeee
Q psy16475 273 PVYLIGV 279 (299)
Q Consensus 273 ~~~~~~~ 279 (299)
+.|...+
T Consensus 441 ~~y~~~~ 447 (457)
T PRK10580 441 IGWMFKR 447 (457)
T ss_pred HHHHHHh
Confidence 7777644
No 24
>KOG1289|consensus
Probab=99.85 E-value=1.7e-21 Score=175.71 Aligned_cols=220 Identities=13% Similarity=0.120 Sum_probs=155.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCCce-ehh----HHHHHHHHHHHHHHHHHhhcch-HHHHHHHHHHHhccceeeeeee-ecc
Q psy16475 60 IMISVCGILYLRYTQPDMHRPIK-VSL----WVPISFVLICVFLVVTPILEAP-REVGMAVLITLSGVPVYLIGVK-WRD 132 (299)
Q Consensus 60 ~~~~~~g~~~~~~~~~E~~~p~k-iP~----~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~-~~~ 132 (299)
..+++.|+|...|.+||.|||.| .|| .+.+.++..+.+.+.++++.++ .+..... -.|.|+-.++.+ .++
T Consensus 261 ~~wt~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns---~~g~p~~~i~~~~lg~ 337 (550)
T KOG1289|consen 261 PAWTMSGYDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNS---SLGQPIVQIYYQALGK 337 (550)
T ss_pred ceeEEeccCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcC---CCCChHHHHHHHhcCC
Confidence 34577999999999999999999 999 4455666677777777776653 3322221 234443221111 122
Q ss_pred cCcc---------cccccchhhhhhhhhhhccccccCccc--hhhhhcCCCCCCchhHHHHHHHHHHHHHHh-----ccH
Q psy16475 133 KPEA---------FTRSFNALTYFVQKLMCFVGARYGHFP--AMLSHINISRFTPTPSLVFLNILSLFMLFT-----SDV 196 (299)
Q Consensus 133 ~~~~---------~~~~~~~~~~~~sR~~~~~~a~dg~lP--~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~-----~~~ 196 (299)
+... .+-+..+.+...||..| +.+|||.+| ++++|+||++++|.||+++..+++.++.++ .++
T Consensus 338 k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~-afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~s~~Af 416 (550)
T KOG1289|consen 338 KGAVFLLSLIIIALFFMGISSLTASSRLVY-AFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLILASATAF 416 (550)
T ss_pred CceEehhHHHHHHHHHhhHHHHHHHHHHHh-hhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 2211 12355667888999999 999999999 899999998899999999999999987665 359
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCccchhH------HHHHHHHHHHHHHHhhcccc------hHHHHHH
Q psy16475 197 FLLITYSSFVESAFIMISVCGILYLRYTQPDMHRPIKVSLW------VPISFVLICVFLVVTPILEA------PREVGMA 264 (299)
Q Consensus 197 ~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 264 (299)
+.+.+.+.+...++|.+..++.+..+|+ ...++||..+.+ ..+++.++++.++..|...+ ++.+++.
T Consensus 417 ~Alfs~a~i~l~~Ay~iP~~~rlf~~r~-~f~~gp~~lGk~s~p~~~i~v~w~lf~~vil~fP~~~pvT~~~MNya~VV~ 495 (550)
T KOG1289|consen 417 NALFSAAAIALFIAYAIPIFCRLFFGRD-DFRPGPFNLGKFSKPIGIIAVLWVLFMIVILCFPSVYPVTADNMNYACVVY 495 (550)
T ss_pred HHHHHHHHHHHHHHHHHhHHhheeeccc-ccCCCCccccccccchHHHHHHHHHHHHHHHhCCcccCCCcccCceEEEee
Confidence 9999999999999999999988877776 334567776653 45666666666666665443 2456666
Q ss_pred HHHHHhhhheeeeeeeecCC
Q psy16475 265 VLITLSGVPVYLIGVKWRDK 284 (299)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~ 284 (299)
++.++...++|+...||..+
T Consensus 496 gg~~lf~li~~~~~~~k~f~ 515 (550)
T KOG1289|consen 496 GGVMLFCLIYYFVSARKWFK 515 (550)
T ss_pred hhhhhhhhheeeeecceeec
Confidence 66777777777777555443
No 25
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.85 E-value=4e-21 Score=178.77 Aligned_cols=216 Identities=19% Similarity=0.189 Sum_probs=135.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHh---hcch-HHHHHHHHHHHhccceeeeeeeec
Q psy16475 57 SAFIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPI---LEAP-REVGMAVLITLSGVPVYLIGVKWR 131 (299)
Q Consensus 57 ~~~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~---~~~~-~~~~~~~~~~~~g~~~~~~~~~~~ 131 (299)
.....++|.|+|...+.+||.|||+| +||++....+.....++.... ...| ++... ...|........+
T Consensus 217 ~~~~~~af~G~e~~~~~a~E~knP~r~iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~------~~~p~~~~~~~~g 290 (469)
T PRK11049 217 FQIAVFAFVGIELVGTTAAETKDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVP------DKSPFVELFVLVG 290 (469)
T ss_pred HHHHHHHHhcHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHeeecCccccCc------cCCcHHHHHHHcC
Confidence 34567899999999999999999999 999664333332333322222 1122 21110 0011100000000
Q ss_pred cc-C---------cccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHH---HHh-----
Q psy16475 132 DK-P---------EAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFM---LFT----- 193 (299)
Q Consensus 132 ~~-~---------~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~---~~~----- 193 (299)
.. . ....++.|+.+.+.+|.++ +|+|||.+|++|+|+| |+++|++|++++++++.+. ...
T Consensus 291 ~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~-a~ardg~lP~~~~kv~-~~~tP~~Ai~~~~~~~~~~~~~~~~~~~~~ 368 (469)
T PRK11049 291 LPAAASVINFVVLTSAASSANSGVFSTSRMLF-GLAQEGVAPKAFAKLS-KRAVPAKGLTFSCICLLGGVVLLYVNPSVI 368 (469)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCCCHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHhCccHH
Confidence 00 0 1224678888999999999 9999999999999999 5699999999998765431 111
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC--CCccchhH--HHHHHHHHHHHHHHh-hcccchHHHHHHHHH-
Q psy16475 194 SDVFLLITYSSFVESAFIMISVCGILYLRYTQPDMH--RPIKVSLW--VPISFVLICVFLVVT-PILEAPREVGMAVLI- 267 (299)
Q Consensus 194 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~- 267 (299)
..++.+.+.++....+.|.+.+.+++++||++||.+ +|||.|.. .+++.++.+.+.... ....++.......+.
T Consensus 369 ~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~p~~~~~~pf~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (469)
T PRK11049 369 GAFTLVTTVSAILFMFVWTIILCSYLVYRKQRPHLHEKSIYKMPLGKLMCWVCMAFFAFVLVLLTLEDDTRQALIVTPLW 448 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCccCcCcchHHHHHHHHHHHHHHHHHHchhHHHHHHHHHHH
Confidence 247778889999999999999999999999988765 58998763 444444444444333 222234333333333
Q ss_pred HHhhhheeeeeee
Q psy16475 268 TLSGVPVYLIGVK 280 (299)
Q Consensus 268 ~~~~~~~~~~~~~ 280 (299)
..+....|++.+|
T Consensus 449 ~~~~~~~~~~~~~ 461 (469)
T PRK11049 449 FIALGLGYLFIGK 461 (469)
T ss_pred HHHHHHHHHHHcc
Confidence 3334444544443
No 26
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.85 E-value=4.4e-21 Score=173.43 Aligned_cols=253 Identities=13% Similarity=0.160 Sum_probs=172.2
Q ss_pred chHHHHHHHHHHHHHHHhcChH-------H------HHH-Hhh-HHHHHHHHHHHHHHHHHHhcCCCCCCCce-ehhHHH
Q psy16475 25 PTPSLVFLNILSLFMLFTSDVF-------L------LIT-YSS-FVESAFIMISVCGILYLRYTQPDMHRPIK-VSLWVP 88 (299)
Q Consensus 25 P~~ail~~~vi~~i~~~~~~~~-------~------l~~-~~~-~~~~~~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~ 88 (299)
|+.+++...+++++....+..+ . +.+ +.+ ........+++.|.|.+...++|.+||+| +|+++.
T Consensus 193 KV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~iPkAik 272 (541)
T COG0833 193 KVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIPKAIK 272 (541)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchhhhHHHHH
Confidence 4677777777777766543211 0 100 111 12234556788999999999999999999 999777
Q ss_pred HHHHHHHHHHHHHHhh-------cchHHHHHHHHHHHhccceeeeeeeeccc-----C-----cccccccchhhhhhhhh
Q psy16475 89 ISFVLICVFLVVTPIL-------EAPREVGMAVLITLSGVPVYLIGVKWRDK-----P-----EAFTRSFNALTYFVQKL 151 (299)
Q Consensus 89 ~~~~~~~~~~i~~~~~-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~-----~~~~~~~~~~~~~~sR~ 151 (299)
-.+..+.++++...+. .||. +..+.......-|+-...+..+-. . ....+..||.+++.||+
T Consensus 273 ~vfwRIl~FYi~si~~ig~lvPy~dp~-Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYasSR~ 351 (541)
T COG0833 273 QVFWRILLFYILSIFVIGLLVPYNDPR-LLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYASSRM 351 (541)
T ss_pred HHHHHHHHHHHHHHHHheEEccCCCcc-cccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHHHHH
Confidence 7766666665544432 2322 110000001111221111111110 1 23458999999999999
Q ss_pred hhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHhc------cHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q psy16475 152 MCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFTS------DVFLLITYSSFVESAFIMISVCGILYLRYTQ 225 (299)
Q Consensus 152 ~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~ 225 (299)
+| +||+||..||+|+|+| |+|+|.+|++++.+++++..+.. .++.+.++++....+.|..+++++++.||..
T Consensus 352 L~-sLA~~g~APk~f~~~~-r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~~i~W~~I~~shirFR~A~ 429 (541)
T COG0833 352 LY-SLAKQGKAPKIFAKVD-RRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSGFIAWGSICLSHIRFRRAM 429 (541)
T ss_pred HH-HHHhcCCCchHHHhhC-CCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99 9999999999999999 88999999999999998765541 4899999999999999999999999999874
Q ss_pred CC-----CCCCccchh--HHHHHHHHHHHHHHHhhccc--ch--------HHHHHHHHHHHhhhheeeeeee
Q psy16475 226 PD-----MHRPIKVSL--WVPISFVLICVFLVVTPILE--AP--------REVGMAVLITLSGVPVYLIGVK 280 (299)
Q Consensus 226 ~~-----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~--------~~~~~~~~~~~~~~~~~~~~~~ 280 (299)
+. .+-|||.|. +.|+.++..++.+++...+. .| .....+..++++....|.+.+|
T Consensus 430 ~~QG~s~~~L~yks~~~p~g~~~~~~~~~li~i~q~y~af~p~~~~~~~F~~~Yl~~pi~i~~y~~yk~~~k 501 (541)
T COG0833 430 KAQGRSLDELPYKSPFGPYGPIYGLILCILILIGQGYVAFFPIGFSAGDFFAAYLGLPIFIAIYIGYKLYKK 501 (541)
T ss_pred HHcCCChhhcCccCCCccHHHHHHHHHHHHHHHHcchheeecCCccHHHHHHHHHHHHHHHHHHHHheeEec
Confidence 32 134899987 58888888888777763332 11 2456667777777777777665
No 27
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.84 E-value=1e-20 Score=175.33 Aligned_cols=189 Identities=16% Similarity=0.172 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHH---h-hcchHHHHHHHHHHHhccceeeeeeeeccc
Q psy16475 59 FIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTP---I-LEAPREVGMAVLITLSGVPVYLIGVKWRDK 133 (299)
Q Consensus 59 ~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~---~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 133 (299)
...+++.|+|...+.+||.|||+| +||++..........++... . ..+.++.. ..+.|+.......+..
T Consensus 208 ~~~~af~G~e~~~~~aeE~knP~r~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~------~~~sP~~~~~~~~g~~ 281 (456)
T PRK10238 208 IIMFSFGGLELVGITAAEADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVT------ADTSPFVLIFHELGDT 281 (456)
T ss_pred HHHHHhcCHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecChhccC------CCCCcHHHHHHHcCCh
Confidence 467899999999999999999999 99966433332222222111 1 12222111 0112221111111111
Q ss_pred C----------cccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHh------ccHH
Q psy16475 134 P----------EAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFT------SDVF 197 (299)
Q Consensus 134 ~----------~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~------~~~~ 197 (299)
. ....++.|+.+++.+|++| +|+|||.+|++|+|+| |+++|++|++++++++.+..+. ..++
T Consensus 282 ~~~~i~~~~i~~~~~s~~~~~~~~~sR~l~-a~ardg~lP~~f~kv~-~~~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~ 359 (456)
T PRK10238 282 FVANALNIVVLTAALSVYNSCVYCNSRMLF-GLAQQGNAPKALASVD-KRGVPVNTILVSALVTALCVLINYLAPESAFG 359 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCccHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 1 1224688999999999999 9999999999999999 6799999999999998776543 3488
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCC--CCCccchh--HHHHHHHHHHHHHHHhhcc
Q psy16475 198 LLITYSSFVESAFIMISVCGILYLRYTQPDM--HRPIKVSL--WVPISFVLICVFLVVTPIL 255 (299)
Q Consensus 198 ~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 255 (299)
.+.++++....+.|.+..++++++||++++. +++|+.+. +.++..++.+.+..+....
T Consensus 360 ~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 421 (456)
T PRK10238 360 LLMALVVSALVINWAMISLAHMKFRRAKQEQGVVTRFPALLYPLGNWICLLFMAAVLVIMLM 421 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCCccHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999886643 34566544 3555555555555544443
No 28
>PRK11021 putative transporter; Provisional
Probab=99.79 E-value=1.6e-18 Score=158.92 Aligned_cols=180 Identities=16% Similarity=0.138 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHhh---cch-HHHHHHHHHHHhccceeeeee-eec
Q psy16475 58 AFIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPIL---EAP-REVGMAVLITLSGVPVYLIGV-KWR 131 (299)
Q Consensus 58 ~~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~~---~~~-~~~~~~~~~~~~g~~~~~~~~-~~~ 131 (299)
....+++.|+|...+.+||.|||+| +||++..........++..... ..+ .+.... +.+...... ..+
T Consensus 184 ~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~~lYil~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~G 257 (410)
T PRK11021 184 GVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAGLVYWACTVVVLHFPAYGDKQAA------AASLPGIFVQLFG 257 (410)
T ss_pred HHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhhc------cccHHHHHHHHhC
Confidence 3456799999999999999999999 9996655554444443332221 111 111000 000000000 001
Q ss_pred ccC---------cccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHh-----ccHH
Q psy16475 132 DKP---------EAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFT-----SDVF 197 (299)
Q Consensus 132 ~~~---------~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~-----~~~~ 197 (299)
... ....++.|+.+.+.+|+++ +|+|||.+|++|+|+| |+|+|++|++++.+++.+..+. .+++
T Consensus 258 ~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~-a~ardg~lP~~~~k~~-~~~tP~~ail~~~~i~~~~~l~~~~~~~~~~ 335 (410)
T PRK11021 258 GYALWVICVIGYLACFASVNIYTQSFARLVW-SQAREGRPPSYLARLS-ARGVPVNALNAVLGCCAVSILLIYALGLNLE 335 (410)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHccCCccHHHHhhc-cCCCcHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 111 1223677888889999999 9999999999999999 7899999999998887765432 4788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCccchhHHHHHHHHHHHHHHHhhc
Q psy16475 198 LLITYSSFVESAFIMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPI 254 (299)
Q Consensus 198 ~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (299)
.+.+.++....+.|.+..++.++++|+++ ...|++..+.+++++....
T Consensus 336 ~l~~~~~~~~li~y~~~~~a~~~l~~~~~---------~~~~~~~~~~~~~~~~~~~ 383 (410)
T PRK11021 336 ALIAYANGIFVLIYLLCMLAACKLLKGRY---------RPLAVLGCLLCLLLLVMLG 383 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccch---------HHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999886531 2468888888888877543
No 29
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.79 E-value=8.4e-19 Score=163.54 Aligned_cols=175 Identities=14% Similarity=0.142 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHH----HHHHHHHhhcch-HHHHHHHHHHHhccceeeeeeeecc
Q psy16475 59 FIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLIC----VFLVVTPILEAP-REVGMAVLITLSGVPVYLIGVKWRD 132 (299)
Q Consensus 59 ~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~----~~~i~~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~ 132 (299)
...+++.|+|...+.+||.|||+| +||++.....+.. .+.+......++ ++.... ..+.|.. .....+.
T Consensus 221 ~~~~~f~G~e~~~~~aeE~knP~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~p~~-~~~~~g~ 295 (475)
T TIGR03428 221 MAAYVMVGFGSAGELSEETKNPRRVAPRTILTALSVSALGGGLMILGALMAAPSLTDGRLA----AEGLPYV-LSAVLDS 295 (475)
T ss_pred HHHHHhcCcchHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHhhcC----CCchHHH-HHHHhCc
Confidence 456789999999999999999999 9995544443322 222222222111 111100 0111110 0000000
Q ss_pred cC---------cccccccchhhhhhhhhhhccccccCccc--hhhhhcCCCCCCchhHHHHHHHHHHHHHHh-----ccH
Q psy16475 133 KP---------EAFTRSFNALTYFVQKLMCFVGARYGHFP--AMLSHINISRFTPTPSLVFLNILSLFMLFT-----SDV 196 (299)
Q Consensus 133 ~~---------~~~~~~~~~~~~~~sR~~~~~~a~dg~lP--~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~-----~~~ 196 (299)
.. ....++.++.+.+.+|++| ++||||.+| ++|+|+|||+++|++|+++.++++.++.+. ..|
T Consensus 296 ~~~~~~~~~~~i~~~~~~~~~~~~~sR~~~-a~Ardg~lP~s~~~~~v~~r~~tP~~A~~l~~~i~~~~~~i~~~~~~af 374 (475)
T TIGR03428 296 PWGTVLLVDVAIAILVCTLAIQTAGSRLMF-SMARDGKLPASAQLSRVHPRTGTPILPSIVIGVLCIGILLINVGNSALF 374 (475)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCcchHHhcccCCCCCCcHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 00 1123577888999999999 999999999 489999999999999999999998876654 247
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccC------CCCCCCccchhHHH
Q psy16475 197 FLLITYSSFVESAFIMISVCGILYLRYTQ------PDMHRPIKVSLWVP 239 (299)
Q Consensus 197 ~~l~~~~~~~~~~~~~~~~~~~~~~r~~~------~~~~~~~~~~~~~~ 239 (299)
+.+.++++...++.|.+.....+..|+|+ +..++||+.+.+..
T Consensus 375 ~~l~s~~~~~~~~~Y~~~~~~~l~~~~~~~~~~~~~~~~g~f~lg~~g~ 423 (475)
T TIGR03428 375 ATLASVCIVLIYLAYLLVTVPLLLRRLRGWPRGDQTDPAGLFSLGRWGL 423 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCCCCCCCCCCchhHH
Confidence 88999999999999999888877665442 12467899887533
No 30
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.78 E-value=1.3e-18 Score=160.60 Aligned_cols=183 Identities=14% Similarity=0.196 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHhh---cchHHHHHHHHHHHhccceeeeeee----
Q psy16475 58 AFIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPIL---EAPREVGMAVLITLSGVPVYLIGVK---- 129 (299)
Q Consensus 58 ~~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~---- 129 (299)
....+++.|+|...+.+||.|||+| +||++.........+++..... ..|.+.... .+.|+....+.
T Consensus 194 ~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~~~~iv~ilYil~~~~~~~~~p~~~~~~-----~~~p~~~~~~~~~g~ 268 (435)
T PRK10435 194 LLCLWAFVGVESAAVSTGMVKNPKRTVPLATMLGTGLAGIIYIAATQVISGMFPASVMAA-----SGAPFAISASTILGN 268 (435)
T ss_pred HHHHHHHhhHHHHHHHHHHhhCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhc-----CCCcHHHHHHHHhch
Confidence 3567899999999999999999999 9996666555544444433332 122111110 11111000000
Q ss_pred eccc------CcccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHH----h------
Q psy16475 130 WRDK------PEAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLF----T------ 193 (299)
Q Consensus 130 ~~~~------~~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~----~------ 193 (299)
+... .....++.|+.++..+|..+ +++|||.+||+|+|+| |+|+|.+|++++++++.++.. .
T Consensus 269 ~~~~~i~~~~~i~~l~~~~~~~~~~~r~~~-~~ardG~lP~~f~k~n-k~g~P~~Al~~~~~~~~~l~~~~~~~~~~~~~ 346 (435)
T PRK10435 269 WAAPLVSAFTAFACLTSLGSWMMLVGQAGV-RAANDGNFPKVYGEVD-KNGIPKKGLLLAAVKMTALMILITLMNSSGGK 346 (435)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCccHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 0000 01224677888899999999 8999999999999999 899999999998877654321 1
Q ss_pred --ccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCccchhHHHHHHHHHHHHHHH
Q psy16475 194 --SDVFLLITYSSFVESAFIMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVV 251 (299)
Q Consensus 194 --~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (299)
..++.+.++++....+.|++++++++++|+ ++.++++ ..+.+.+...++++.+.
T Consensus 347 ~~~~~~~l~~~~~~~~l~~y~~~~~~~ir~~~--~~~~~~~--~~~~~~~~~~~~~~~~~ 402 (435)
T PRK10435 347 ASDLFGELTGIAVLLTMLPYFYSCVDLIRFEG--VNIRNFV--SLICSVLGCVFCFIALM 402 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CchhHHH--HHHHHHHHHHHHHHHHH
Confidence 247889999999999999999999986654 3222222 11355555555555554
No 31
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.78 E-value=2.6e-18 Score=169.78 Aligned_cols=193 Identities=14% Similarity=0.088 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHhh---cchHHHHH---HHHHH-Hhcc---------c
Q psy16475 60 IMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPIL---EAPREVGM---AVLIT-LSGV---------P 122 (299)
Q Consensus 60 ~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~~---~~~~~~~~---~~~~~-~~g~---------~ 122 (299)
.+.++.|++.....+||.|||+| +|+++.....+..++++...+. ..+.+... ..... ..|. |
T Consensus 289 ~F~A~tGi~agan~sgElKnP~r~IPratl~ai~i~~vlYllv~~~~~~~~~~d~~~~~~~~l~~~~~g~~~f~~~~~~p 368 (953)
T TIGR00930 289 FFPSVTGILAGANISGDLKDPQKAIPKGTLLAILTTTVVYLGSVVLFGACVVRDATGDKNDTLVTNCTSAACFSECAHNT 368 (953)
T ss_pred HHHHHHHHHHHHHHHHhccChhhhhHHHHHHHHHHHHHHHHHHHHHHHccccHhhhcccchhhhcccccchhhhhhcccc
Confidence 34579999999999999999999 9996555554444444433321 11111000 00000 0000 0
Q ss_pred e-ee------eee-eecc-------cCcccccccchhhhhhhhhhhccccccCccc--hhhhhcCCCCCCchhHHHHHHH
Q psy16475 123 V-YL------IGV-KWRD-------KPEAFTRSFNALTYFVQKLMCFVGARYGHFP--AMLSHINISRFTPTPSLVFLNI 185 (299)
Q Consensus 123 ~-~~------~~~-~~~~-------~~~~~~~~~~~~~~~~sR~~~~~~a~dg~lP--~~~~~~~~~~~~P~~ai~~~~~ 185 (299)
. +. ... .... ......++.++.+.+++|+++ ++||||.+| ++|+|+|+|+++|++|++++++
T Consensus 369 ~~~gL~~~~~~~~~~~~~~~lI~ig~~~stlss~la~l~~asRvl~-AmArDg~lP~l~~fakv~~k~~tP~~Alllt~i 447 (953)
T TIGR00930 369 CSYGLMNNLQVMSLVSPFPPLITAGIFSATLSSALASLVSAPRLFQ-ALCKDNIYPFLQFFGKGYGKNGEPLRAYLLTAF 447 (953)
T ss_pred hhhhhcchHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCcchhhcccCCCCCCcHHHHHHHHH
Confidence 0 00 000 0000 001224678889999999999 999999999 8999999999999999999999
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCC-ccchh-HHHHHHHHHHHHHHHhh
Q psy16475 186 LSLFMLFTSDVFLLITYSSFVESAFIMISVCGILYLRYTQPDMHRP-IKVSL-WVPISFVLICVFLVVTP 253 (299)
Q Consensus 186 i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~ 253 (299)
+++++.++++++.+..+.+...+++|.++.++.+.+|.+++...|| ||... ++++++++.++++.+..
T Consensus 448 Ia~l~ili~~l~~ia~lis~~fLl~Y~lvnla~~~l~~~~~p~~RP~fk~~~~~~sllG~l~c~~lmf~i 517 (953)
T TIGR00930 448 IAEGFILIAELNTIAPIISNFFLASYALINFSCFHASLLRSPGWRPRFKYYHWWLSLLGASLCCAIMFLI 517 (953)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccchHHHHHHHHHHHHHHHHHH
Confidence 9999988889999999999999999999999999888655433344 45433 57888888887776654
No 32
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=99.77 E-value=1.9e-18 Score=161.90 Aligned_cols=174 Identities=16% Similarity=0.168 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHhh---cch-HHHH-------HH---HHHHHhccc
Q psy16475 58 AFIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPIL---EAP-REVG-------MA---VLITLSGVP 122 (299)
Q Consensus 58 ~~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~~---~~~-~~~~-------~~---~~~~~~g~~ 122 (299)
....+++.|+|...+.+||.|||+| +||++.........+++..... ..| ++.. .. ......|.+
T Consensus 218 ~~~~~~f~G~e~~~~~a~E~~~p~~~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 297 (496)
T PRK15238 218 VFAIFAYGGIEAVGGLVDKTENPEKNFPKGIIIAAIVISIGYSLAIFLWGVSTNWQQVLSNKSVNLGNITYVLMNNLGYT 297 (496)
T ss_pred HHHHHHHHhHHHHHHHHHhccCCCccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhcCCccccchhccHHHHHHHHHHH
Confidence 3456899999999999999999999 9996655554444443322211 111 1100 00 000011110
Q ss_pred eeeeee--ee-----ccc---------CcccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHH
Q psy16475 123 VYLIGV--KW-----RDK---------PEAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNIL 186 (299)
Q Consensus 123 ~~~~~~--~~-----~~~---------~~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i 186 (299)
...... .. +.. .....++.++..++.+|.++ +++|||.+||+|+|+| |+++|++|+++++++
T Consensus 298 ~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~~~~g~~P~~f~k~n-k~g~P~~a~~~~~~i 375 (496)
T PRK15238 298 LGHALGLSPAASLTLGVWFARITGLSMFLAYTGAFFTLSYSPLKQLI-EGTPKALWPKKMTKLN-KNGMPANAMWLQCII 375 (496)
T ss_pred HHHHhccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-hhCccCcccHHHHhhC-cCCCcHHHHHHHHHH
Confidence 000000 00 000 01123577777888899988 7889999999999999 899999999999988
Q ss_pred HHHHHHh---c---c---HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCccc
Q psy16475 187 SLFMLFT---S---D---VFLLITYSSFVESAFIMISVCGILYLRYTQPDMHRPIKV 234 (299)
Q Consensus 187 ~~~~~~~---~---~---~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 234 (299)
+.+.... + . |+.+.++++....+.|.+.+.+++++|| +|+.+|||+.
T Consensus 376 ~~l~~~~~~~~~~~~~~~f~~l~~l~~~~~li~y~~~~~a~i~~r~-~~~~~r~~~~ 431 (496)
T PRK15238 376 VSVFILLVSFGGDAASAFFNILTLMANVSMTLPYLFLAGAFPFFKK-KKDIDRPFVV 431 (496)
T ss_pred HHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCCcee
Confidence 7765322 1 1 6789999999999999999999999876 5666777665
No 33
>KOG1286|consensus
Probab=99.75 E-value=2.5e-17 Score=153.58 Aligned_cols=176 Identities=16% Similarity=0.165 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHhh---cchHHH--HHHHHHHHhcccee-eeee
Q psy16475 56 ESAFIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPIL---EAPREV--GMAVLITLSGVPVY-LIGV 128 (299)
Q Consensus 56 ~~~~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~~---~~~~~~--~~~~~~~~~g~~~~-~~~~ 128 (299)
......++|.|.|.+...+||.|||+| +|+++......+..+++..... .-|.+. +.... ....|+. ....
T Consensus 237 ~~~~~~fsf~G~e~va~~a~E~kNP~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~--~~~spF~iai~~ 314 (554)
T KOG1286|consen 237 GAATAFFSFIGFELVATTAEEAKNPRKAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGA--ALASPFVIAIGN 314 (554)
T ss_pred HHHHHHHHHhhHHHHHHHHHhccCCcccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCC--ccccHHHHHHhc
Confidence 345677899999999999999999999 9997766666555555544432 111100 00000 1111110 0000
Q ss_pred -eecc---cC-----cccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHhcc----
Q psy16475 129 -KWRD---KP-----EAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFTSD---- 195 (299)
Q Consensus 129 -~~~~---~~-----~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~---- 195 (299)
..+. .. ....+++|+.++..+|.++ +||+||.+||+|+++|++ ++|++|++++++.+.+..+..+
T Consensus 315 ~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~-amA~~G~~Pk~f~~v~~~-g~P~~a~~v~~~~~~l~~~~~~~~~~ 392 (554)
T KOG1286|consen 315 AGAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLY-ALAKDGLAPKFFARVDRR-GVPLVAVLVSGLFGALAALNFSLGAA 392 (554)
T ss_pred cCccccchhhhHHHHHHHHHHHHHHhHHhHHHHH-HHHhcCCcchHHhhcCCC-CCchhHHHHHHHHHHHHHHHhccccc
Confidence 0000 01 2235789999999999999 999999999999999966 9999999999999998777633
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC-----CCCCccch
Q psy16475 196 --VFLLITYSSFVESAFIMISVCGILYLRYTQPD-----MHRPIKVS 235 (299)
Q Consensus 196 --~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~~~~~ 235 (299)
++++.++.+.+..+.|...+.+++++|+..++ .+.+|+.+
T Consensus 393 ~~f~~L~~~~si~tl~~w~~i~~~~i~~R~a~~~q~~~~~~~~~~s~ 439 (554)
T KOG1286|consen 393 TVFNWLVNLSSIGTLFAWTLVALSHLRFRYAMKVQGRSLDELPYKSP 439 (554)
T ss_pred hHHHHHHHHHhHHHHHHHHHHHHHHeeeeecccccCCCcccccccCC
Confidence 69999999999999999999999999887422 23456665
No 34
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=99.75 E-value=7e-19 Score=164.33 Aligned_cols=177 Identities=19% Similarity=0.206 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHhh----cchHHHHH-H---------HHHHHhccc
Q psy16475 58 AFIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPIL----EAPREVGM-A---------VLITLSGVP 122 (299)
Q Consensus 58 ~~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~~----~~~~~~~~-~---------~~~~~~g~~ 122 (299)
...++++.|+|.....+||.|||+| +||++....+....+++...+. .+.++... . ......+.+
T Consensus 207 ~~~~~af~G~e~~a~~a~E~k~P~k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~ 286 (478)
T PF00324_consen 207 VFAFFAFVGFESIAILAEEAKNPRKTIPRATLLSVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQYSGGP 286 (478)
T ss_pred hhhhcccccccccccccccCCCchhhhhhHhhhhhhhhhhhhhhhhhhcccccCccchhhccccccccchhhhhhhcccc
Confidence 3466789999999999999999999 9997666665555555544432 11111100 0 000011111
Q ss_pred eeeeeeeecccCcccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHhc------cH
Q psy16475 123 VYLIGVKWRDKPEAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFTS------DV 196 (299)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~------~~ 196 (299)
.... ...........++.|+.++..+|.++ +|+|||.+|+++.+.|+|+++|++|++++++++.+..+.. .+
T Consensus 287 ~~~~-i~~~~~l~s~~s~~~~~~~~~sR~l~-ama~dg~lP~~~~~~~~k~~~P~~Ai~~~~~i~~~~~l~~~~~~~~~~ 364 (478)
T PF00324_consen 287 WLAW-IVNAGILISAFSSANASLYAASRLLY-AMARDGLLPKKFFARHPKNGVPYVAILVSSIISLLVLLLGSFSPGIVF 364 (478)
T ss_pred cccc-eecccchhhhhhhhhhhhcccceeeh-hhhhhhhhhhhhhhhhhcCCceEEEEeeehhchheeeeeccchhhHHH
Confidence 0000 00001113345788999999999999 9999999996666678899999999999999988766542 25
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC-----CCCccchh
Q psy16475 197 FLLITYSSFVESAFIMISVCGILYLRYTQPDM-----HRPIKVSL 236 (299)
Q Consensus 197 ~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-----~~~~~~~~ 236 (299)
+.+.+..+....+.|.+...+++++||+.+.. +.|++.+.
T Consensus 365 ~~~~~~~~~~~l~~~~~~~~s~~~~r~~~~~~~~~~~~~~~~~~~ 409 (478)
T PF00324_consen 365 NWLLNISTISNLIVYILINISYIRFRKKFKYRGRSISELPFKSPF 409 (478)
T ss_pred HHHhhhhhhhhhhHHHhhhhhhhhhhhhhccccccccccChhhhh
Confidence 66788889999999999999999888874322 23666655
No 35
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.74 E-value=1.9e-17 Score=154.12 Aligned_cols=174 Identities=18% Similarity=0.330 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHhh---cchH-HHHHHHHHHHhccceeeeeeeecc
Q psy16475 58 AFIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPIL---EAPR-EVGMAVLITLSGVPVYLIGVKWRD 132 (299)
Q Consensus 58 ~~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~~---~~~~-~~~~~~~~~~~g~~~~~~~~~~~~ 132 (299)
....+++.|+|...+.+||+|||+| +|+++....+....+++..... ..+. +.... ....|..........
T Consensus 208 ~~~~~~f~G~e~~~~~a~E~knp~r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~----~~~~p~~~~~~~~~g 283 (466)
T COG0531 208 LLAFFAFTGFEAIATLAEEVKNPKRTIPRAIILSLLIVLILYILGALVIVGVLPAGDLAAS----APSAPLALAALFGGG 283 (466)
T ss_pred HHHHHHhhcHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHhCccHHHHhcc----CCCccHHHHHHHcCc
Confidence 3457899999999999999999988 9997666555444444433332 1222 11111 000121111111110
Q ss_pred -cC---------cccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHH-HHHHhc----cHH
Q psy16475 133 -KP---------EAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSL-FMLFTS----DVF 197 (299)
Q Consensus 133 -~~---------~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~-~~~~~~----~~~ 197 (299)
.. ....++.++...+.+|..+ +|+|||.+|++|+|+|+|+++|+++++++++++. +..... +++
T Consensus 284 ~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~-~~ardg~lP~~~~~~~~~~~~P~~a~~~~~ii~~~l~~~~~~~~~~~~ 362 (466)
T COG0531 284 NWGAIIIAILALLSLFGSLLAWILAVSRVLY-AMARDGLLPKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFN 362 (466)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCccHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhccccHHH
Confidence 11 1223677889999999999 9999999999999999999999999999999999 333322 478
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCccchh
Q psy16475 198 LLITYSSFVESAFIMISVCGILYLRYTQPDMHRPIKVSL 236 (299)
Q Consensus 198 ~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 236 (299)
.+.++++....+.|.+...+..++|+++|+.+++++.+.
T Consensus 363 ~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (466)
T COG0531 363 ALVSLASVAFLIAYLLVALALLVLRRKKPDLKRPFRLPL 401 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcccccc
Confidence 999999999999999999999999999887777777665
No 36
>KOG1287|consensus
Probab=99.71 E-value=4.6e-17 Score=146.81 Aligned_cols=152 Identities=41% Similarity=0.778 Sum_probs=136.9
Q ss_pred eeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHHhcChHHHHHHhhHHHHHHHHHHHHHHHHHHhcCCCCCCCc
Q psy16475 2 CFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGILYLRYTQPDMHRPI 81 (299)
Q Consensus 2 ~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~E~~~p~ 81 (299)
++++||||++|+.|+++|++..+|+.++++++.+++++...+|+++++|+.++..|..+.+++.|+.++|+++++.+||.
T Consensus 313 ~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~rPi 392 (479)
T KOG1287|consen 313 FYAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPLPRPI 392 (479)
T ss_pred HHHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCE
Confidence 57899999999999999988889999999999999999999999999999999999999999999999999999999999
Q ss_pred eehhHHHHHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHhccceeeeeeeecccCcccccccchhhhhhhhhhh
Q psy16475 82 KVSLWVPISFVLICVFLVVTPILEA-PREVGMAVLITLSGVPVYLIGVKWRDKPEAFTRSFNALTYFVQKLMC 153 (299)
Q Consensus 82 kiP~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~ 153 (299)
|+|..++..++..+..++..++..+ +.+...+..+...|.++|+...+++.++.|+....++.+...+.+..
T Consensus 393 Kvpl~~p~~~~~~~i~lvvip~~~~~~~~~~ig~~i~l~G~~~Y~~~i~~~~~p~~~~~~~~~it~~~q~l~~ 465 (479)
T KOG1287|consen 393 KVPLFIPILFLLICIFLVVIPIISDFPVETLIGIGIILSGVPFYFLFIHWKKKPKWLRKISESITRVCQKLFN 465 (479)
T ss_pred eeeeehHHHHHHHHHHHhheeeeecCCccchhHHHHHHHhhhhheEEEEecCCcHHHHHhhHHHHHHHHHHHH
Confidence 9999999999999999988888776 56678888889999999999888888888887766776666666654
No 37
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.62 E-value=5.6e-16 Score=142.77 Aligned_cols=190 Identities=18% Similarity=0.294 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCceehhHHHHHHHHHHHHHHHHHh----hcchHHHHHHHHHHHhccceeeeeeeec-
Q psy16475 57 SAFIMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPI----LEAPREVGMAVLITLSGVPVYLIGVKWR- 131 (299)
Q Consensus 57 ~~~~~~~~~g~~~~~~~~~E~~~p~kiP~~~~~~~~~~~~~~i~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~- 131 (299)
.....+++.|+|...+.+||.|| +++||++....+....++..... ..++++...... ...+........+
T Consensus 194 ~~~~~~~~~G~e~~~~~~~E~k~-k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 269 (426)
T PF13520_consen 194 FSVAFFAFSGFEAIASLAEENKN-KTIPRAIIISIIIVAIIYILFSIALLGALPDDELANSSN---SPSPFAVLASAVGG 269 (426)
T ss_dssp HHHHGGGGTTTTHHHHGGGGSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTC---HHCHHHHHHHHHHC
T ss_pred HHHHHhhcccccccccccccccc-hhheeecccchhHHHHHHhhhhheeeecccchhhhcccc---cccccchhhccccc
Confidence 34466788999999999999887 34999665555544444433322 222222210000 0000000001111
Q ss_pred ccC---------cccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHH-h-----ccH
Q psy16475 132 DKP---------EAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLF-T-----SDV 196 (299)
Q Consensus 132 ~~~---------~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~-~-----~~~ 196 (299)
... ....++.|+.+.+.+|.++ +++|||.+|++|+|+| |+++|++|++++++++.++.+ . .++
T Consensus 270 ~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~-~~a~d~~lP~~~~~~~-k~~~P~~a~~~~~~i~~i~~~~~~~~~~~~~ 347 (426)
T PF13520_consen 270 SWLAIIVSIAAILSLFGSINAFIFGASRLLY-AMARDGVLPKWFAKVN-KFGTPYNAIILVAVISSILLLLFLFIPQSSF 347 (426)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTTSSSGGGGTTS-SSSSCHHHHHHHHHHHHHHHHHTTTSSSSHH
T ss_pred cccccccccccccccccccchhhcchhhccc-ccccccchhhhhhhcc-ccCCceeeehhhhHHHHHHHHHHHhhhHHHH
Confidence 111 1224688889999999999 9999999999999999 999999999999999965532 2 358
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCC-CccchhHHHHHHHHHHHHHHHhhc
Q psy16475 197 FLLITYSSFVESAFIMISVCGILYLRYTQPDMHR-PIKVSLWVPISFVLICVFLVVTPI 254 (299)
Q Consensus 197 ~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 254 (299)
+.+.+..+....+.|.+..++.+++|+|+|+.+| +++. ..+++..+..++......
T Consensus 348 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~i~~~~~~~~~~~~~~ 404 (426)
T PF13520_consen 348 DILVSLSSVGYLISYILVILAVLFLRRKRPDLKRIPYRP--PVGIIGIIIILFVIIASF 404 (426)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHTHHHSCSSGH-HHHH--HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcCCCCcch--HHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999887655 3332 234444444444444443
No 38
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.48 E-value=1.4e-13 Score=127.55 Aligned_cols=129 Identities=21% Similarity=0.317 Sum_probs=101.1
Q ss_pred CeeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHHhcChHHHHHHhhHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q psy16475 1 MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGILYLRYTQPDMHRP 80 (299)
Q Consensus 1 ~~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~E~~~p 80 (299)
++|+|||||.+|++|+|+|||+|+|+++++++.+++.++...++.+.+.+..+...+..+...+.+....|++ ++.++|
T Consensus 306 ~~~a~ardg~lp~~~~~v~~~~~tP~~a~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~i~lr~~-~~~~~~ 384 (445)
T PRK11357 306 LEYAMAKDNLFFKCFGHVHPKYNTPDVSIILQGALGIFFIFVSDLTSLLGYFTLVMCFKNTLTFGSIIWCRKR-DDYKPL 384 (445)
T ss_pred HHHHHHhcCCchHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHheeecC-CCCCCC
Confidence 3689999999999999999999999999999999998888778888888888888888888888888888765 566889
Q ss_pred ceehh--HHHHHHHHHHHHHHHHHhhcchHH-HHHHHHHHHhccceeeeeeee
Q psy16475 81 IKVSL--WVPISFVLICVFLVVTPILEAPRE-VGMAVLITLSGVPVYLIGVKW 130 (299)
Q Consensus 81 ~kiP~--~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~ 130 (299)
+|.|. ..+...+..+.+++......++.+ ...+......|.++|+..+++
T Consensus 385 ~k~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~~ 437 (445)
T PRK11357 385 WRTPAFGLMTTLAIASSLILVASTFVWAPIPGLICAVIVIATGLPAYAFWAKR 437 (445)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhhhHHhheech
Confidence 99876 455556555555554444455543 334666778999988766544
No 39
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.46 E-value=1.2e-13 Score=129.90 Aligned_cols=125 Identities=44% Similarity=0.895 Sum_probs=101.7
Q ss_pred CeeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHHhcChHHHHHHhhHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q psy16475 1 MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGILYLRYTQPDMHRP 80 (299)
Q Consensus 1 ~~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~E~~~p 80 (299)
++|+|||||.+|++|+|+|+|+++|++++++.++++.+....++..++.+..+...+..+.++..+...+|+++||.+||
T Consensus 343 ~l~a~ardg~lP~~~~~v~~~~~~P~~all~~~~i~~l~~~~~~~~~l~~~~~~~~~i~y~l~~~a~i~lR~~~p~~~rp 422 (501)
T TIGR00911 343 LFFVGGREGHLPSLLSMIHVKRLTPLPSLLIVCTLTLLMLFSGDIYSLINLISFANWLFNALAVAGLLWLRYKRPEMNRP 422 (501)
T ss_pred HHHHHHhcCCccHHHHHhcCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHheeccCCCCCCC
Confidence 36899999999999999999999999999999888887776778888888777888889999999999999999999999
Q ss_pred ceehhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhccceee
Q psy16475 81 IKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYL 125 (299)
Q Consensus 81 ~kiP~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~ 125 (299)
+|.|...+...++.+.+.+...+..++.+...+......|.++|.
T Consensus 423 ~r~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~ 467 (501)
T TIGR00911 423 IKVPLFFPVFFLLSCLFLIILSLYSPPVGCGVGFIIMLTGVPVYF 467 (501)
T ss_pred ccCchHHHHHHHHHHHHHhhhhhccCchhhHHHHHHHHHHHHHHH
Confidence 999886666666666666555555555554555666677877765
No 40
>TIGR00909 2A0306 amino acid transporter.
Probab=99.43 E-value=7.4e-13 Score=122.19 Aligned_cols=121 Identities=19% Similarity=0.263 Sum_probs=94.6
Q ss_pred eeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHHhcChHHHHHHhhHHHHHHHHHHHHHHHHHHhcCCCCCCCc
Q psy16475 2 CFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGILYLRYTQPDMHRPI 81 (299)
Q Consensus 2 ~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~E~~~p~ 81 (299)
+|++||||.+|++|+|+|+|+++|++++++..+++.+....++++.+.+..+......|.+.+.+...+|++.+|.++|+
T Consensus 305 ~~~~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~a~~~lr~~~~~~~~~~ 384 (429)
T TIGR00909 305 LFAMSRDGLLPGSLSKVHPKTGTPHMSIIIFSLTAALLASLVPLEGLAELTSIGTLIAFAAVNVAVIILRRRRPDIQRAF 384 (429)
T ss_pred HHHHHcCCCCcHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCC
Confidence 57899999999999999999999999999999888887767788888888888888999999999999999999999999
Q ss_pred eehhH--HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhccceee
Q psy16475 82 KVSLW--VPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYL 125 (299)
Q Consensus 82 kiP~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~ 125 (299)
|.|.. .+...+..+. ......++.+..........|.++|.
T Consensus 385 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~y~ 427 (429)
T TIGR00909 385 RCPLVPVLPVLVVSYCI---YLLLNLGPGTTVWFLVWMLLGSVFYF 427 (429)
T ss_pred CCCcchHHHHHHHHHHH---HHHHHccHHHHHHHHHHHHHHHHHHH
Confidence 97652 2222222222 22233455666667777788887663
No 41
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.41 E-value=1.2e-12 Score=121.23 Aligned_cols=106 Identities=24% Similarity=0.342 Sum_probs=87.3
Q ss_pred CeeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHHhcChHHHHHHhhHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q psy16475 1 MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGILYLRYTQPDMHRP 80 (299)
Q Consensus 1 ~~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~E~~~p 80 (299)
++|+|||||.+|++|+|+| |+|+|++|+++..+++.+....++.+.+.+..+...+..|.++..+....|++++|.++|
T Consensus 302 ~l~a~ardg~lP~~~~~~~-~~~~P~~Ail~~~~i~~~~~l~~~~~~l~~~~~~~~~~~y~~~~~a~i~lr~~~p~~~rp 380 (442)
T TIGR00908 302 QIFALSRAGYLPESLSKVN-RKKAPVLAIVVPGVIGFGLSLTGQTALIILVSVFGAIISYVLSMAAHFTLRIRRPDMERP 380 (442)
T ss_pred HHHHHHhcCCccHHHHHhC-CCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 3689999999999999999 999999999999998888777777777777778888889999999999999999999999
Q ss_pred ceehh--HHHHHHHHHHHHHHHHHhhcch
Q psy16475 81 IKVSL--WVPISFVLICVFLVVTPILEAP 107 (299)
Q Consensus 81 ~kiP~--~~~~~~~~~~~~~i~~~~~~~~ 107 (299)
+|.|. ..++..++.+.+.+......++
T Consensus 381 ~~~p~~~~~~~l~~~~~~~~l~~~~~~~~ 409 (442)
T TIGR00908 381 YRTPGGILTPGVALVLACVALVTGFYVDP 409 (442)
T ss_pred ccCCCcchHHHHHHHHHHHHHHHHHHcCh
Confidence 99875 5556665555555555544455
No 42
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.25 E-value=3.6e-11 Score=114.06 Aligned_cols=74 Identities=23% Similarity=0.232 Sum_probs=65.9
Q ss_pred CeeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHHhcChHHHHHHhhHHHHHHHHHHHHHHHHHHhcC
Q psy16475 1 MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGILYLRYTQ 74 (299)
Q Consensus 1 ~~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 74 (299)
++|+|||||.+|++|+|+|+|+++|++++++..+++.++....+.+.+.+..+.+....+.+...+...+|++.
T Consensus 339 il~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~~~~~~l~~l~sig~ll~y~lv~~~~l~lR~~~ 412 (557)
T TIGR00906 339 VIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFDLKALVDLLSIGTLLAYSLVAACVLILRYQP 412 (557)
T ss_pred HHHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 36899999999999999999999999999999999888777778888889888888889999888998888543
No 43
>PRK10655 potE putrescine transporter; Provisional
Probab=99.20 E-value=4.6e-11 Score=110.60 Aligned_cols=122 Identities=11% Similarity=0.191 Sum_probs=88.9
Q ss_pred eeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHHh-------cChHHHHHHhhHHHHHHHHHHHHHHHHHHhcC
Q psy16475 2 CFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFT-------SDVFLLITYSSFVESAFIMISVCGILYLRYTQ 74 (299)
Q Consensus 2 ~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~~-------~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 74 (299)
+|+|||||.+|++|+|+| |+++|+++++++.+++.++... ++++.+.+..+......|.+...+...+|+++
T Consensus 299 ~~~~a~dg~lP~~~~~v~-~~~tP~~all~~~~i~~~l~l~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~~~lr~~~ 377 (438)
T PRK10655 299 FKSSADEGYFPKIFSRVT-KVDAPVQGMLIIVVIQSLLSLMTISPSLNSQFNVLVNLAVVTNIIPYILSMAALVIIQKVA 377 (438)
T ss_pred HHHHhcCCchhHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 588999999999999999 7899999999988876654432 23566777778888889999999999999998
Q ss_pred CCCCCCceehhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhccceeeee
Q psy16475 75 PDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLIG 127 (299)
Q Consensus 75 ~E~~~p~kiP~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 127 (299)
++.++|+|.|..++....+.+.+.+ +..+......+......|.++|...
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~y~~~ 427 (438)
T PRK10655 378 NVPPSKAKVANFIAFVGALYSFYAL---YSSGEEAMLYGSIVTFLGWTLYGLI 427 (438)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 8878888866555554444443221 2222234455666777888877543
No 44
>KOG2082|consensus
Probab=99.11 E-value=1.1e-09 Score=102.03 Aligned_cols=223 Identities=14% Similarity=0.079 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHhh-cc-hHHHHH--HHHHHHhccceeeeeeeecccC
Q psy16475 60 IMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPIL-EA-PREVGM--AVLITLSGVPVYLIGVKWRDKP 134 (299)
Q Consensus 60 ~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~~-~~-~~~~~~--~~~~~~~g~~~~~~~~~~~~~~ 134 (299)
++=+..|...=..++++.|||+| +|.......+..+.+++..... .. .+.... -.+....|-.+-.. ..|-...
T Consensus 419 fFPsVTGImaGSNrSGDLkDaQkSIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRDKfG~sv~g~lVva~-laWPsPw 497 (1075)
T KOG2082|consen 419 FFPSVTGIMAGSNRSGDLKDAQKSIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRDKFGQSVGGNLVVAT-LAWPSPW 497 (1075)
T ss_pred hccccceeeecCCCCccccchhhcCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhccCcEEEEE-ecCCCce
Confidence 34466677777788999999999 9984433333333333332221 10 010000 01111222211000 0111110
Q ss_pred -----ccc--ccccchhhhhhhhhhhccccccCccc--hhhhhcCCCCCCchhHHHHHHHHHHHHHHhccHHHHHHHHHH
Q psy16475 135 -----EAF--TRSFNALTYFVQKLMCFVGARYGHFP--AMLSHINISRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSF 205 (299)
Q Consensus 135 -----~~~--~~~~~~~~~~~sR~~~~~~a~dg~lP--~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~ 205 (299)
.++ .+...-++++++|++. +.|||+.+| +-|+|.+ +++-|..|++++.+|+-+-+++++++.+.-+.++
T Consensus 498 Vi~IGsFlST~GAgLQsLtgAPRLLQ-AIAkD~IiPfL~~F~~~~-~ngEPt~aLlLT~~Ice~gILigslD~iApilsm 575 (1075)
T KOG2082|consen 498 VIVIGSFLSTCGAGLQSLTGAPRLLQ-AIAKDDIIPFLAPFGHGK-ANGEPTWALLLTAIICECGILIGSLDLIAPILSM 575 (1075)
T ss_pred eeehhHHHHHhHHHHhhhcCcHHHHH-HHhhcCccchhhhhcccc-CCCCccHHHHHHHHHHHhhheeechhHHHHHHHH
Confidence 111 1222334788899999 999999999 8999976 8899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhh-hccCCCCCCCccchhH-HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhhhheeeeeeeecC
Q psy16475 206 VESAFIMISVCGILYL-RYTQPDMHRPIKVSLW-VPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLIGVKWRD 283 (299)
Q Consensus 206 ~~~~~~~~~~~~~~~~-r~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (299)
..+.+|....++-... --|.|..+..||...| +..++...|+.+.+...+ ...++..++..++|-|...|..
T Consensus 576 FFLMCY~fVNLaCavqtLLrtPnWRPRfkyyHW~LSflG~sLC~~iMF~~SW------yyAlvAm~~a~~IYKYiEykGA 649 (1075)
T KOG2082|consen 576 FFLMCYLFVNLACAVQTLLRTPNWRPRFKYYHWSLSFLGASLCLAIMFISSW------YYALVAMLIAGVIYKYIEYKGA 649 (1075)
T ss_pred HHHHHHHHHhHHHHHHHHhcCCCCCccchhhhhHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHhhccc
Confidence 9999999886663322 2234543334766555 788888888877765532 2333334445556776665655
Q ss_pred Cchhhhhc
Q psy16475 284 KPEAFTRS 291 (299)
Q Consensus 284 ~~~~~~~~ 291 (299)
++..=|.+
T Consensus 650 eKEWGDGi 657 (1075)
T KOG2082|consen 650 EKEWGDGI 657 (1075)
T ss_pred cchhccch
Confidence 55443433
No 45
>PRK10836 lysine transporter; Provisional
Probab=99.10 E-value=3.4e-10 Score=106.22 Aligned_cols=124 Identities=17% Similarity=0.216 Sum_probs=83.2
Q ss_pred CeeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHHhcC------hHHHHHHhhHHHHHHHHHHHHHHHHHHhc-
Q psy16475 1 MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTSD------VFLLITYSSFVESAFIMISVCGILYLRYT- 73 (299)
Q Consensus 1 ~~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~~~~------~~~l~~~~~~~~~~~~~~~~~g~~~~~~~- 73 (299)
++|+|||||.+|++|+|+| |+++|++|++++.+++.+..+.+. ++.+.+..+......|.....+....|++
T Consensus 322 ~l~a~Ardg~lP~~~~kv~-~~~~P~~All~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~a~l~~R~~~ 400 (489)
T PRK10836 322 MLYTLACDGKAPRIFAKLS-RGGVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSGMTGFIAWLGIAISHYRFRRGY 400 (489)
T ss_pred HHHHHHcCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999 789999999999988876655321 23455666667777788888888888885
Q ss_pred ---CCCCC-CCceehh--HHHHHHHHHHHHHHHHHhhc---chHHHHHHHHHHHhccceee
Q psy16475 74 ---QPDMH-RPIKVSL--WVPISFVLICVFLVVTPILE---APREVGMAVLITLSGVPVYL 125 (299)
Q Consensus 74 ---~~E~~-~p~kiP~--~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~g~~~~~ 125 (299)
.+|.+ +|+|.|. ..+...++.+.+.+...... ++.....+......|+|+|.
T Consensus 401 ~~~~~~~~~~p~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 461 (489)
T PRK10836 401 VLQGHDLNDLPYRSGFFPLGPIFAFVLCLIITLGQNYEAFLKDTIDWGGVAATYIGIPLFL 461 (489)
T ss_pred HhcCCCcCCCCCcCCCccHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHH
Confidence 46665 7999876 55555555555544433222 11112233444456666543
No 46
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.09 E-value=3.2e-10 Score=105.84 Aligned_cols=120 Identities=15% Similarity=0.140 Sum_probs=80.9
Q ss_pred eeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHHh-----cChHHHHHHhhHHHHHHHHHHHHHHHHHHhcCC-
Q psy16475 2 CFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFT-----SDVFLLITYSSFVESAFIMISVCGILYLRYTQP- 75 (299)
Q Consensus 2 ~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~~-----~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~- 75 (299)
+|+|||||.+||+|+|+| |+|+|.++++++.+++.+.... +.++.+.+..+......|.++..+..++|++.+
T Consensus 305 ~~a~ardg~lP~~f~k~~-~~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~~ 383 (468)
T TIGR03810 305 PLLMAKDKLMPKYFGKEN-ANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLATSAILVPYLWSAAYQVKLSWRGGQ 383 (468)
T ss_pred HHHHHhCCCccHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 689999999999999999 7899999999988776554432 235667777777888889999888888887653
Q ss_pred CCCCCceehhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhccceeeee
Q psy16475 76 DMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLIG 127 (299)
Q Consensus 76 E~~~p~kiP~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 127 (299)
|.++++| ..+.. ....+.+...+...+.....+......|.++|+..
T Consensus 384 ~~~~~~~--~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~~~ 430 (468)
T TIGR03810 384 ERGRRKQ--LLIGL---VALLYAVWLIYAAGLKYLLLSAILYAPGIYFYARA 430 (468)
T ss_pred ccchhhh--HHHHH---HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222 12222 22222222333344556666777778888877543
No 47
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.05 E-value=1.1e-09 Score=101.58 Aligned_cols=124 Identities=15% Similarity=0.207 Sum_probs=83.1
Q ss_pred CeeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHHh------cChHHHHHHhhHHHHHHHHHHHHHHHHHHhc-
Q psy16475 1 MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFT------SDVFLLITYSSFVESAFIMISVCGILYLRYT- 73 (299)
Q Consensus 1 ~~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~~------~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~- 73 (299)
++|+|||||.+|++|+|+| |+|+|++|++++.+++.+.... +.++.+.+..+...+..|.....+....|++
T Consensus 291 ~l~a~ardg~lP~~~~~~~-~~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~i~lr~~~ 369 (446)
T PRK10197 291 MLYSLSRRGDAPAVMGKIN-RSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKIL 369 (446)
T ss_pred HHHHHHcCCCcCHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999 8899999999998776654432 1356777788888888999999999998885
Q ss_pred -CCCCCCCceehh--HHHHHHHHHHHHHHHHHhhc-chHHHHHHHHHHHhccceee
Q psy16475 74 -QPDMHRPIKVSL--WVPISFVLICVFLVVTPILE-APREVGMAVLITLSGVPVYL 125 (299)
Q Consensus 74 -~~E~~~p~kiP~--~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~g~~~~~ 125 (299)
.++.+.|+|.|. ..+...+....+.+...... ++.....+......+...|.
T Consensus 370 ~~~~~~~~~~~~~~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (446)
T PRK10197 370 RAEGSEIRLRMWLYPWLTWLVIGFITFVLVVMLFRPAQQLEVISTGLLAIGIICTV 425 (446)
T ss_pred HhcCCCCCCcCCCcchHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHHHHHhhh
Confidence 334456777664 34444444443333332222 22222334445556655544
No 48
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.04 E-value=8.4e-10 Score=103.09 Aligned_cols=128 Identities=15% Similarity=0.210 Sum_probs=82.1
Q ss_pred CeeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHHhc--C----hHHHHHHhhHHHHHHHHHHHHHHHHHHhcC
Q psy16475 1 MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTS--D----VFLLITYSSFVESAFIMISVCGILYLRYTQ 74 (299)
Q Consensus 1 ~~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~~~--~----~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 74 (299)
++|+|||||.+|++|+|+| |+++|++++++..+.+.+.+... . ++.+.+..+......|.+...+....|++.
T Consensus 315 ~l~a~ardg~lP~~f~~~~-~~~~P~~Ail~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~li~y~~~~~~~i~lr~~~ 393 (471)
T PRK11387 315 MLWSLSNEGTLPACFARLT-KRGIPLTALSVSMLGGLLALFSSVVAPDTVFVALSAISGFAVVAVWLSICASHFMFRRRH 393 (471)
T ss_pred HHHHHHhcCCcCHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999 78999999998876555443321 1 233455666666677888888888888776
Q ss_pred CC-----CCCCceehh--HHHHHHHHHHHHHHHHHhhcchH--HHHHHHHHHHhccceeeeeee
Q psy16475 75 PD-----MHRPIKVSL--WVPISFVLICVFLVVTPILEAPR--EVGMAVLITLSGVPVYLIGVK 129 (299)
Q Consensus 75 ~E-----~~~p~kiP~--~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~ 129 (299)
++ .++|+|.|. ..+...++.+.+.+......++. ....+......+.+.|..+++
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (471)
T PRK11387 394 LRDGKALSELAYRAPWYPLTPILGFVLCLLACVGLAFDPSQRIALWCGIPFVALCYGAYYLTQR 457 (471)
T ss_pred HhcCCCCCCCCccCCCccHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 43 346888776 45555555554444333222221 133455555667776655433
No 49
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.04 E-value=1.1e-09 Score=102.54 Aligned_cols=84 Identities=14% Similarity=0.144 Sum_probs=64.6
Q ss_pred CeeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHHh-c-----ChHHHHHHhhHHHHHHHHHHHHHHHHHHhc-
Q psy16475 1 MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFT-S-----DVFLLITYSSFVESAFIMISVCGILYLRYT- 73 (299)
Q Consensus 1 ~~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~~-~-----~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~- 73 (299)
++|+|||||.+|++|+|+| |+++|++|++++.+++.+.... + .++.+.+..+......|.+...+....|++
T Consensus 315 ~l~a~ardg~lP~~f~k~~-~~~~P~~Ai~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~i~~r~~~ 393 (478)
T TIGR00913 315 TLYALAHQGLAPKIFAYVD-RRGVPYVAVIVSSLFGLLAFLAVSKKEAEVFTWLLNISGLSGFFTWMCICLSHIRFRKAM 393 (478)
T ss_pred HHHHHHhCCcccHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999 7899999999998887654332 1 245566676777778888888888888765
Q ss_pred ----CCCCCCCceehh
Q psy16475 74 ----QPDMHRPIKVSL 85 (299)
Q Consensus 74 ----~~E~~~p~kiP~ 85 (299)
.++.++|+|.|.
T Consensus 394 ~~~~~~~~~~p~~~~~ 409 (478)
T TIGR00913 394 KAQGRSLDELPYKSQT 409 (478)
T ss_pred HhcCCCcccCCccCCC
Confidence 234577888766
No 50
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.03 E-value=7.8e-10 Score=103.36 Aligned_cols=120 Identities=18% Similarity=0.253 Sum_probs=81.8
Q ss_pred eeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHH-----hcChHHHHHHhhHHHHHHHHHHHHHHHHHHhcCCC
Q psy16475 2 CFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLF-----TSDVFLLITYSSFVESAFIMISVCGILYLRYTQPD 76 (299)
Q Consensus 2 ~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~-----~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~E 76 (299)
+|+|||||.+|++|+|+| ++++|++++++..+++.+... .++++.+.+..+......|.+...+....|++. +
T Consensus 309 ~~amardg~lP~~~~~v~-~~~tP~~Ai~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~-~ 386 (473)
T TIGR00905 309 PFSAAKDGLFPKIFGRVN-KNGAPSVALLLTNILIQLFLLLTLLTSSAYNVLVSLAVVMILVPYLLSAAYLLKLAKVG-T 386 (473)
T ss_pred HHHHHhCCChhHHHHhhC-ccCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-C
Confidence 689999999999999999 569999999999887764443 235677788888888999999999998888765 2
Q ss_pred CCC-CceehhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhccceeee
Q psy16475 77 MHR-PIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLI 126 (299)
Q Consensus 77 ~~~-p~kiP~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~ 126 (299)
.++ +++.+..++......+.+. .+..++.+...+......|.++|..
T Consensus 387 ~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~g~~~y~~ 434 (473)
T TIGR00905 387 YPKIKNRKALIVGVIACVYSIWL---LYAAGLKYLLLGFILYAPGIIFYGR 434 (473)
T ss_pred ccccccchHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 222 2222223444443333332 2233445555666666778776643
No 51
>KOG1288|consensus
Probab=99.01 E-value=1.6e-09 Score=100.26 Aligned_cols=178 Identities=13% Similarity=0.105 Sum_probs=121.6
Q ss_pred HHHHHHHHhcCCCCCCCce-ehh--HHHHHHHHHHHHHHHHHh-hcchHHHHHHHHHHHhccceeeeeeeecccC-----
Q psy16475 64 VCGILYLRYTQPDMHRPIK-VSL--WVPISFVLICVFLVVTPI-LEAPREVGMAVLITLSGVPVYLIGVKWRDKP----- 134 (299)
Q Consensus 64 ~~g~~~~~~~~~E~~~p~k-iP~--~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----- 134 (299)
..|...=+.+++|.|+|.| +|+ ...+.+..++++++.... +..|...+...- .+.......+
T Consensus 307 ~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~~t~~r~~Lq~dy---------~v~~~isl~p~fi~i 377 (945)
T KOG1288|consen 307 TTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMGCTVPRTLLQNDY---------DVMMHISLHPPFILI 377 (945)
T ss_pred chhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHhccCcchHHhhhch---------hheeeccccchHHHH
Confidence 3677777788999999999 999 334444444444433332 233333222110 0000111111
Q ss_pred ---cccccccchhhhhhhhhhhccccccCccc--hhhhhcCCCCCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q psy16475 135 ---EAFTRSFNALTYFVQKLMCFVGARYGHFP--AMLSHINISRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESA 209 (299)
Q Consensus 135 ---~~~~~~~~~~~~~~sR~~~~~~a~dg~lP--~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~~~~ 209 (299)
.....+..+.+.+++|++. +.|||..+| -.|+|...+.+-|+.|+.++-.+.-+..+.++++.+.++.+...++
T Consensus 378 Gi~sttlfss~s~liGasrvL~-alakD~lfg~ll~fak~~s~~~nP~~av~vtw~lvqlvll~g~~N~iA~~it~~FLl 456 (945)
T KOG1288|consen 378 GILSTTLFSSMSGLIGASRVLE-ALAKDDLFGGLLFFAKGSSYDGNPYVAVGVTWLLVQLVLLWGDINKIASMITMTFLL 456 (945)
T ss_pred HHHHHHHHHHHHHHhhHHHHHH-HHhhcccchhhheeeeccccCCCceeeeeHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 1111233456889999998 999999999 5788988899999999999999999888889999999999999999
Q ss_pred HHHHHHHHHHhhhccC-CCCCCCccchhH-HHHHHHHHHHHHHH
Q psy16475 210 FIMISVCGILYLRYTQ-PDMHRPIKVSLW-VPISFVLICVFLVV 251 (299)
Q Consensus 210 ~~~~~~~~~~~~r~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~ 251 (299)
+|..+.++.+.++... |+-+..||...+ ..+++.+.++.+.+
T Consensus 457 ty~~vNLacl~LeissAPNFRPtFkyF~w~TclvG~l~s~~mMf 500 (945)
T KOG1288|consen 457 TYGAVNLACLLLEISSAPNFRPTFKYFNWHTCLVGVLLSLGMMF 500 (945)
T ss_pred HHHHHHHHHHHhhhccCCCCCchhhhhhHHHHHHHHHHHHhhhh
Confidence 9999999988888764 433223665544 67777766665544
No 52
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=98.98 E-value=1.6e-09 Score=100.45 Aligned_cols=121 Identities=17% Similarity=0.247 Sum_probs=83.1
Q ss_pred eeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHHh---c----ChHHHHHHhhHHHHHHHHHHHHHHHHHHhcC
Q psy16475 2 CFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFT---S----DVFLLITYSSFVESAFIMISVCGILYLRYTQ 74 (299)
Q Consensus 2 ~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~~---~----~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 74 (299)
.|+|||||.+||+|+|+| |+++|+++++++.+++.+..+. . .++.+.+..+......|.+...+....|+++
T Consensus 301 ~~a~ardg~lP~~~~~v~-~~~tP~~Ai~~~~~i~~l~~l~~~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~ 379 (445)
T PRK10644 301 AKAAADDGLFPPIFARVN-KAGTPVAGLLIVGVLMTIFQLSSISPNASKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGH 379 (445)
T ss_pred HHHHHhCCCccHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 578999999999999999 6899999999999887765533 1 2555667777778888999999999998887
Q ss_pred CCCCCCceehhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhccceeeeee
Q psy16475 75 PDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLIGV 128 (299)
Q Consensus 75 ~E~~~p~kiP~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 128 (299)
++.++|.. | ..+...++.+.+.+. ..++.+...+......+.++|+..+
T Consensus 380 ~~~~~p~~-~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~y~~~~ 428 (445)
T PRK10644 380 FGKARPAY-L-AVTLIAFVYCIWAVV---GSGAKEVMWSFVTLMVITAFYALNY 428 (445)
T ss_pred Ccccccch-h-HHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 65555532 2 344444444444432 2334444555555667777765443
No 53
>PRK15049 L-asparagine permease; Provisional
Probab=98.96 E-value=4.5e-09 Score=98.74 Aligned_cols=106 Identities=11% Similarity=0.120 Sum_probs=74.7
Q ss_pred CeeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHH---h---cChHHHHHHhhHHHHHHHHHHHHHHHHHHhcC
Q psy16475 1 MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLF---T---SDVFLLITYSSFVESAFIMISVCGILYLRYTQ 74 (299)
Q Consensus 1 ~~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~---~---~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 74 (299)
++|+|||||.+|++|+|+| |+++|++|++++.+++.+... . +.++.+.+..+......|.+...+....|++.
T Consensus 329 ~l~a~Ardg~lP~~f~kv~-k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~~~~li~y~~~~~~~l~~R~~~ 407 (499)
T PRK15049 329 ILRSMAMGGSAPSFMAKMS-RQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASLGIIASWAFIIVCQMRLRKAI 407 (499)
T ss_pred HHHHHHhcCCcCHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4689999999999999999 889999999988877554322 1 12566778888888889999999998888763
Q ss_pred C---CCCCCceehh--HHHHHHHHHHHHHHHHHhhcch
Q psy16475 75 P---DMHRPIKVSL--WVPISFVLICVFLVVTPILEAP 107 (299)
Q Consensus 75 ~---E~~~p~kiP~--~~~~~~~~~~~~~i~~~~~~~~ 107 (299)
+ +.++|+|.|. ...+..++...+.+.......|
T Consensus 408 ~~~~~~~~pf~~~~~p~~~~~~l~~~~~~~~~~~~~~~ 445 (499)
T PRK15049 408 KEGKAADVSFKLPGAPFTSWLTLLFLLSVLVLMAFDYP 445 (499)
T ss_pred hhcCCCCCCCcccCccHHHHHHHHHHHHHHHHHHHcCc
Confidence 3 3356899876 3444444444433333333334
No 54
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=98.92 E-value=3.7e-09 Score=99.50 Aligned_cols=84 Identities=15% Similarity=0.291 Sum_probs=67.2
Q ss_pred CeeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHHh----cC-----hHHHHHHhhHHHHHHHHHHHHHHHHHH
Q psy16475 1 MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFT----SD-----VFLLITYSSFVESAFIMISVCGILYLR 71 (299)
Q Consensus 1 ~~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~~----~~-----~~~l~~~~~~~~~~~~~~~~~g~~~~~ 71 (299)
++|++||||.+|++|+|+| |+|+|.++++++++++.++... ++ +..+.+..+......|.+.+.+...+|
T Consensus 308 ~l~~~ardg~lP~~~~k~n-k~~~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~i~Y~l~~~a~i~lr 386 (507)
T TIGR00910 308 GMFAAAQKGLLPAAFAKMN-KHEVPVPLVIIQGIITSIAGAILTFGGGGNNLSFLIAIALTVVIYLCAYFLFFIGYFVLI 386 (507)
T ss_pred HHHHhcccCCcCHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999 8899999999998877654321 11 122334556677888999999999999
Q ss_pred hcCCCCCCCceehh
Q psy16475 72 YTQPDMHRPIKVSL 85 (299)
Q Consensus 72 ~~~~E~~~p~kiP~ 85 (299)
++.+|.+||+|+|.
T Consensus 387 ~k~p~~~rpf~~pg 400 (507)
T TIGR00910 387 LKHPDLKRTFNIPG 400 (507)
T ss_pred HhcCCCCCCeEecC
Confidence 99999999999875
No 55
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=98.92 E-value=4.4e-09 Score=97.82 Aligned_cols=81 Identities=15% Similarity=0.213 Sum_probs=62.8
Q ss_pred CeeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHHh--cC----hHHHHHHhhHHHHHHHHHHHHHHHHHHhcC
Q psy16475 1 MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFT--SD----VFLLITYSSFVESAFIMISVCGILYLRYTQ 74 (299)
Q Consensus 1 ~~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~~--~~----~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 74 (299)
++|+|||||.+||+|+|+| |+++|++|+++..+++.+.... .+ ++.+.+..+......|.....+....|++.
T Consensus 311 ~~~a~ardg~lP~~~~~v~-~~~~P~~Ail~~~~~~~~~~l~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~~i~~r~~~ 389 (452)
T TIGR01773 311 MLYSLAERGDAPRVFMKLN-KKGVPVQAVLASTFFSFLTVVVNYFAPDKVFLFLVNSSGAIALLVYLVIAVSQLRMRKKL 389 (452)
T ss_pred HHHHHHhCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999 7899999999998887765443 12 234556666667788888888888888887
Q ss_pred CCCCCCce
Q psy16475 75 PDMHRPIK 82 (299)
Q Consensus 75 ~E~~~p~k 82 (299)
++.++|++
T Consensus 390 ~~~~~~~~ 397 (452)
T TIGR01773 390 KANGEAIK 397 (452)
T ss_pred HhcCCCCC
Confidence 76666644
No 56
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=98.91 E-value=5e-09 Score=97.97 Aligned_cols=83 Identities=18% Similarity=0.314 Sum_probs=66.2
Q ss_pred eeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHH----hcC----hHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Q psy16475 2 CFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLF----TSD----VFLLITYSSFVESAFIMISVCGILYLRYT 73 (299)
Q Consensus 2 ~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~----~~~----~~~l~~~~~~~~~~~~~~~~~g~~~~~~~ 73 (299)
+|+|||||.+||+|+|+| |+|+|+++++++.++..++.. ..+ ++.+.+..+......|.+...+...+|++
T Consensus 307 ~~a~ardg~lP~~~~kv~-k~~~P~~a~~~~~~~~~~l~~~~~~~~s~~~~f~~l~~~~~~~~~i~y~~~~~a~i~lr~~ 385 (474)
T TIGR03813 307 MLAVAKAGYLPTFFQKTN-KNGMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQILSQLTVILYLVMYLLMFASAIYLRYS 385 (474)
T ss_pred HHHHhhcCCCCHHHhccC-CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 689999999999999999 899999999988876443221 122 34555666666777888999999999988
Q ss_pred CCCCCCCceehh
Q psy16475 74 QPDMHRPIKVSL 85 (299)
Q Consensus 74 ~~E~~~p~kiP~ 85 (299)
.+|.++|+|+|.
T Consensus 386 ~~~~~rpf~~p~ 397 (474)
T TIGR03813 386 QPDRPRPYRIPG 397 (474)
T ss_pred CCCCCCCeEecC
Confidence 889999999875
No 57
>PRK10249 phenylalanine transporter; Provisional
Probab=98.88 E-value=1.3e-08 Score=94.75 Aligned_cols=84 Identities=17% Similarity=0.155 Sum_probs=65.5
Q ss_pred CeeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHHh---c---ChHHHHHHhhHHHHHHHHHHHHHHHHHHh--
Q psy16475 1 MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFT---S---DVFLLITYSSFVESAFIMISVCGILYLRY-- 72 (299)
Q Consensus 1 ~~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~~---~---~~~~l~~~~~~~~~~~~~~~~~g~~~~~~-- 72 (299)
++|+|||||.+|++|+|+| |+|+|++|++++.+++.+.... . .++.+.+..+......|.+...+....|+
T Consensus 318 ~l~a~ardg~lP~~~~kv~-~~~~P~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~~ 396 (458)
T PRK10249 318 MLFGLSVQGNAPKFLTRVS-RRGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVVATLLLNWIMICLAHLRFRAAM 396 (458)
T ss_pred HHHHHhcCCCcCHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999 7899999999998887765432 1 24556667667777888888888888886
Q ss_pred cCCCCCCCceehh
Q psy16475 73 TQPDMHRPIKVSL 85 (299)
Q Consensus 73 ~~~E~~~p~kiP~ 85 (299)
++++.++|+|.|.
T Consensus 397 ~~~~~~~p~~~~~ 409 (458)
T PRK10249 397 RRQGRETQFKALL 409 (458)
T ss_pred HhcCCCCCccCCC
Confidence 4455678888765
No 58
>PRK10746 putative transport protein YifK; Provisional
Probab=98.87 E-value=9e-09 Score=95.85 Aligned_cols=84 Identities=12% Similarity=0.192 Sum_probs=62.3
Q ss_pred CeeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHH----HhcC----hHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q psy16475 1 MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFML----FTSD----VFLLITYSSFVESAFIMISVCGILYLRY 72 (299)
Q Consensus 1 ~~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~----~~~~----~~~l~~~~~~~~~~~~~~~~~g~~~~~~ 72 (299)
++|+|||||++|++|+|+| |+|+|+++++++.+...+.. ...+ ++.+.+..+......|.....+....|+
T Consensus 309 ~l~~~a~~g~lP~~~~~~~-~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~ 387 (461)
T PRK10746 309 MLYALAKNRQLPAAMAKVS-RHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRR 387 (461)
T ss_pred HHHHHHhCCCcCHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999 88999999988764433211 1111 3456667777777888888888888998
Q ss_pred cCCC--CCCCceehh
Q psy16475 73 TQPD--MHRPIKVSL 85 (299)
Q Consensus 73 ~~~E--~~~p~kiP~ 85 (299)
+.++ .++|+|.|.
T Consensus 388 ~~~~~~~~~~~~~~~ 402 (461)
T PRK10746 388 AHKAAIASHPFRSIL 402 (461)
T ss_pred hccccccCCCCcCCC
Confidence 8775 356888554
No 59
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=98.84 E-value=1.1e-08 Score=95.54 Aligned_cols=83 Identities=25% Similarity=0.309 Sum_probs=63.1
Q ss_pred eeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHH---HH-hcC----hHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Q psy16475 2 CFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFM---LF-TSD----VFLLITYSSFVESAFIMISVCGILYLRYT 73 (299)
Q Consensus 2 ~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~---~~-~~~----~~~l~~~~~~~~~~~~~~~~~g~~~~~~~ 73 (299)
+|+|||||.+|++|+|+| |+|+|++++++..++..+. .. ..+ ++.+.+..+......|.....+....|++
T Consensus 321 l~a~ardg~lP~~~~kv~-~~~tP~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~ 399 (469)
T PRK11049 321 LFGLAQEGVAPKAFAKLS-KRAVPAKGLTFSCICLLGGVVLLYVNPSVIGAFTLVTTVSAILFMFVWTIILCSYLVYRKQ 399 (469)
T ss_pred HHHHHhCCCCCHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 689999999999999999 6699999999887654431 11 122 34445555666677888889999999999
Q ss_pred CCCCC--CCceehh
Q psy16475 74 QPDMH--RPIKVSL 85 (299)
Q Consensus 74 ~~E~~--~p~kiP~ 85 (299)
.+|.+ +|+|.|.
T Consensus 400 ~p~~~~~~pf~~p~ 413 (469)
T PRK11049 400 RPHLHEKSIYKMPL 413 (469)
T ss_pred hhhcCCCCCccCcC
Confidence 88876 4788765
No 60
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=98.84 E-value=9.8e-09 Score=96.26 Aligned_cols=84 Identities=11% Similarity=0.104 Sum_probs=62.5
Q ss_pred CeeeccccCCch--hhhhhhcCCCCCchHHHHHHHHHHHHHHHh--c---ChHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Q psy16475 1 MCFVGARYDHFP--VMLSHINLSRFTPTPSLVFLNILSLFMLFT--S---DVFLLITYSSFVESAFIMISVCGILYLRYT 73 (299)
Q Consensus 1 ~~~a~a~~g~lP--~~~~~~~~~~~~P~~ail~~~vi~~i~~~~--~---~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~ 73 (299)
++|+|||||.+| ++|+|+||++|+|+++++++.+++.+.... + .++.+.+..+......|.+...+....|+
T Consensus 330 ~l~a~ardg~lP~~~~f~~v~~~~~~P~~ai~~~~~i~~~~~~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~~~- 408 (482)
T TIGR00907 330 MIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWIILIGLLGLGSSTAFQAIFSVCTVALDVSYVIPIICKLAKGR- 408 (482)
T ss_pred HHHHHHhcCCcCchHhhceeCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 368999999999 999999988899999999998887664433 1 35566677777777778877765544333
Q ss_pred CCCCCCCceehh
Q psy16475 74 QPDMHRPIKVSL 85 (299)
Q Consensus 74 ~~E~~~p~kiP~ 85 (299)
.++.++|+|+++
T Consensus 409 ~~~~~~~f~lg~ 420 (482)
T TIGR00907 409 NTIAPGPFWLGK 420 (482)
T ss_pred CCCCCCCCcCCc
Confidence 245677888744
No 61
>PRK10580 proY putative proline-specific permease; Provisional
Probab=98.82 E-value=2.1e-08 Score=93.35 Aligned_cols=98 Identities=15% Similarity=0.216 Sum_probs=67.3
Q ss_pred CeeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHHh---c---ChHHHHHHhhHHHHHHHHHHHHHHHHHHhcC
Q psy16475 1 MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFT---S---DVFLLITYSSFVESAFIMISVCGILYLRYTQ 74 (299)
Q Consensus 1 ~~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~~---~---~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 74 (299)
++|+|||||.+|++|+|+| |+|+|++|++++.+++.+.... . .++.+.+..+......|.+...+....|++.
T Consensus 308 ~~~~~ardg~lP~~~~kv~-~~~~P~~Ai~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~lr~~~ 386 (457)
T PRK10580 308 MLHGMAEQGSAPKIFSKTS-RRGIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFRRRL 386 (457)
T ss_pred HHHHHHhCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999 6899999999887655543322 1 1345666667777778888888888888774
Q ss_pred --CCCC-CCceehh--HHHHHHHHHHHHHH
Q psy16475 75 --PDMH-RPIKVSL--WVPISFVLICVFLV 99 (299)
Q Consensus 75 --~E~~-~p~kiP~--~~~~~~~~~~~~~i 99 (299)
++.+ +|+|.|. ......+....+.+
T Consensus 387 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 416 (457)
T PRK10580 387 PPEEVKALKFKVPGGVATTIGGLIFLVFII 416 (457)
T ss_pred HhcCCCCCCcccCCccHHHHHHHHHHHHHH
Confidence 2333 3677765 34444444444333
No 62
>TIGR00930 2a30 K-Cl cotransporter.
Probab=98.75 E-value=6.6e-08 Score=96.63 Aligned_cols=98 Identities=7% Similarity=0.073 Sum_probs=76.4
Q ss_pred CeeeccccCCch--hhhhhhcCCCCCchHHHHHHHHHHHHHHHhcChHHHHHHhhHHHHHHHHHHHHHHHHHHhcCC-CC
Q psy16475 1 MCFVGARYDHFP--VMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGILYLRYTQP-DM 77 (299)
Q Consensus 1 ~~~a~a~~g~lP--~~~~~~~~~~~~P~~ail~~~vi~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~-E~ 77 (299)
++|+|||||.+| ++|+|+|+|+++|++|++++.+++.++++.++.+.+.+..+......|.+...+....+...+ +.
T Consensus 412 vl~AmArDg~lP~l~~fakv~~k~~tP~~Alllt~iIa~l~ili~~l~~ia~lis~~fLl~Y~lvnla~~~l~~~~~p~~ 491 (953)
T TIGR00930 412 LFQALCKDNIYPFLQFFGKGYGKNGEPLRAYLLTAFIAEGFILIAELNTIAPIISNFFLASYALINFSCFHASLLRSPGW 491 (953)
T ss_pred HHHHHHhcCCCCcchhhcccCCCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC
Confidence 368999999999 899999999999999999999999998888889999888888888899998888888776553 33
Q ss_pred CCCcee-hhHHHHHHHHHHHHH
Q psy16475 78 HRPIKV-SLWVPISFVLICVFL 98 (299)
Q Consensus 78 ~~p~ki-P~~~~~~~~~~~~~~ 98 (299)
+..+|. ...+++++.+.+.++
T Consensus 492 RP~fk~~~~~~sllG~l~c~~l 513 (953)
T TIGR00930 492 RPRFKYYHWWLSLLGASLCCAI 513 (953)
T ss_pred CCccccchHHHHHHHHHHHHHH
Confidence 333452 224555554444443
No 63
>PRK10238 aromatic amino acid transporter; Provisional
Probab=98.75 E-value=6.4e-08 Score=90.10 Aligned_cols=75 Identities=15% Similarity=0.169 Sum_probs=60.4
Q ss_pred CeeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHHh------cChHHHHHHhhHHHHHHHHHHHHHHHHHHhcC
Q psy16475 1 MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFT------SDVFLLITYSSFVESAFIMISVCGILYLRYTQ 74 (299)
Q Consensus 1 ~~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~~------~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 74 (299)
++|+|||||.+|++|+|+| |+|+|++|++++.+++.+..+. +.++.+.+..+......|.+...+....|++.
T Consensus 309 ~l~a~ardg~lP~~f~kv~-~~~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~~ 387 (456)
T PRK10238 309 MLFGLAQQGNAPKALASVD-KRGVPVNTILVSALVTALCVLINYLAPESAFGLLMALVVSALVINWAMISLAHMKFRRAK 387 (456)
T ss_pred HHHHHHhCCCccHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999 7799999999999887765443 12455667777778888999999999888876
Q ss_pred CC
Q psy16475 75 PD 76 (299)
Q Consensus 75 ~E 76 (299)
++
T Consensus 388 ~~ 389 (456)
T PRK10238 388 QE 389 (456)
T ss_pred Hh
Confidence 54
No 64
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=98.68 E-value=1e-07 Score=88.76 Aligned_cols=84 Identities=25% Similarity=0.433 Sum_probs=70.5
Q ss_pred eeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHH-HHHHhc----ChHHHHHHhhHHHHHHHHHHHHHHHHHHhcCCC
Q psy16475 2 CFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSL-FMLFTS----DVFLLITYSSFVESAFIMISVCGILYLRYTQPD 76 (299)
Q Consensus 2 ~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~-i~~~~~----~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~E 76 (299)
+|+|||||.+|++|+|+|+++++|.+++++..+++. +..... .++.+.+..+......|.++..+....|++.++
T Consensus 313 ~~~~ardg~lP~~~~~~~~~~~~P~~a~~~~~ii~~~l~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 392 (466)
T COG0531 313 LYAMARDGLLPKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSLASVAFLIAYLLVALALLVLRRKKPD 392 (466)
T ss_pred HHHHHhCCCccHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 589999999999999999998999999999999988 333322 246777888888889999999999999999877
Q ss_pred CCCCceehh
Q psy16475 77 MHRPIKVSL 85 (299)
Q Consensus 77 ~~~p~kiP~ 85 (299)
.++|+|.|+
T Consensus 393 ~~~~~~~~~ 401 (466)
T COG0531 393 LKRPFRLPL 401 (466)
T ss_pred CCCcccccc
Confidence 778777555
No 65
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=98.67 E-value=7.6e-08 Score=89.07 Aligned_cols=68 Identities=10% Similarity=0.129 Sum_probs=50.5
Q ss_pred eeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHH-----h-------cChHHHHHHhhHHHHHHHHHHHHHHHH
Q psy16475 2 CFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLF-----T-------SDVFLLITYSSFVESAFIMISVCGILY 69 (299)
Q Consensus 2 ~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~-----~-------~~~~~l~~~~~~~~~~~~~~~~~g~~~ 69 (299)
.++|||||.+||+|+|+| |+|+|.++++++.++..++.. . +.++.+.+..+......|.+...+...
T Consensus 297 ~~~~ardG~lP~~f~k~n-k~g~P~~Al~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~y~~~~~~~ir 375 (435)
T PRK10435 297 GVRAANDGNFPKVYGEVD-KNGIPKKGLLLAAVKMTALMILITLMNSSGGKASDLFGELTGIAVLLTMLPYFYSCVDLIR 375 (435)
T ss_pred HHHHHhCCCccHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357999999999999999 899999999988765544321 1 124556677777777788888877653
Q ss_pred H
Q psy16475 70 L 70 (299)
Q Consensus 70 ~ 70 (299)
.
T Consensus 376 ~ 376 (435)
T PRK10435 376 F 376 (435)
T ss_pred h
Confidence 3
No 66
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=98.61 E-value=1.9e-07 Score=87.86 Aligned_cols=81 Identities=12% Similarity=0.223 Sum_probs=63.8
Q ss_pred eeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHHh---cC------hHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Q psy16475 3 FVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFT---SD------VFLLITYSSFVESAFIMISVCGILYLRYT 73 (299)
Q Consensus 3 ~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~~---~~------~~~l~~~~~~~~~~~~~~~~~g~~~~~~~ 73 (299)
++++|||++||+|+|+| |+|+|+++++++.+++.+.... ++ ++.+.+..+......|.+.+.+....|+
T Consensus 344 ~~~~~~g~~P~~f~k~n-k~g~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~l~~~~~li~y~~~~~a~i~~r~- 421 (496)
T PRK15238 344 IEGTPKALWPKKMTKLN-KNGMPANAMWLQCIIVSVFILLVSFGGDAASAFFNILTLMANVSMTLPYLFLAGAFPFFKK- 421 (496)
T ss_pred HhhCccCcccHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 46678999999999999 9999999999988776654322 21 4557778888888899999999988876
Q ss_pred CCCCCCCceehh
Q psy16475 74 QPDMHRPIKVSL 85 (299)
Q Consensus 74 ~~E~~~p~kiP~ 85 (299)
++|.++|++.|+
T Consensus 422 ~~~~~r~~~~~~ 433 (496)
T PRK15238 422 KKDIDRPFVVFK 433 (496)
T ss_pred ccCCCCCceecC
Confidence 577788887543
No 67
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=98.57 E-value=6.1e-07 Score=80.75 Aligned_cols=104 Identities=15% Similarity=0.229 Sum_probs=73.3
Q ss_pred CeeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHHhc------ChHHHHHHhhHHHHHHHHHHHHHHHHHHhcC
Q psy16475 1 MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTS------DVFLLITYSSFVESAFIMISVCGILYLRYTQ 74 (299)
Q Consensus 1 ~~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~~~------~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 74 (299)
|+|.+|+||+.||.|+|+| |+|+|+++++++.+...+....+ .++.+.+..+......+.+...+..+.|+.+
T Consensus 312 mL~~la~~g~APk~~~kls-k~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk~~ 390 (462)
T COG1113 312 MLYSLAKQGDAPKAFAKLS-KRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLGLLFVWLMILLSQLKLRKAK 390 (462)
T ss_pred HHHHHhhcCcccHhHhhcc-ccCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6789999999999999999 99999999999987666555432 2556667777777777788888888888854
Q ss_pred CC-CCC-Cceehh--HHHHHHHHHHHHHHHHHhhc
Q psy16475 75 PD-MHR-PIKVSL--WVPISFVLICVFLVVTPILE 105 (299)
Q Consensus 75 ~E-~~~-p~kiP~--~~~~~~~~~~~~~i~~~~~~ 105 (299)
+| .|+ ++|+|. ....+.+......+..+...
T Consensus 391 ~~~~~~~~fkm~~~p~~~~l~l~fl~~vlv~m~~~ 425 (462)
T COG1113 391 PAEGKKLKFKMPLYPFTNYLTLAFLAFVLVLMLFD 425 (462)
T ss_pred hhcccCcccccccccHHHHHHHHHHHHHHHHHHcC
Confidence 43 333 467776 44444444444444444433
No 68
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=98.55 E-value=1.2e-07 Score=87.43 Aligned_cols=80 Identities=24% Similarity=0.426 Sum_probs=65.8
Q ss_pred eeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHH-h-----cChHHHHHHhhHHHHHHHHHHHHHHHHHHhcCC
Q psy16475 2 CFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLF-T-----SDVFLLITYSSFVESAFIMISVCGILYLRYTQP 75 (299)
Q Consensus 2 ~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~-~-----~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~ 75 (299)
+++|||||.+|++|+|+| |+|+|..++++..+++.+... . ++.+.+.+..+......+.+...+....|++.+
T Consensus 299 l~~~a~d~~lP~~~~~~~-k~~~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (426)
T PF13520_consen 299 LYAMARDGVLPKWFAKVN-KFGTPYNAIILVAVISSILLLLFLFIPQSSFDILVSLSSVGYLISYILVILAVLFLRRKRP 377 (426)
T ss_dssp HHHHHHTTSSSGGGGTTS-SSSSCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHSC
T ss_pred ccccccccchhhhhhhcc-ccCCceeeehhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 578999999999999999 999999999999999865542 2 235677778788888889999999999999987
Q ss_pred CCCC-Cce
Q psy16475 76 DMHR-PIK 82 (299)
Q Consensus 76 E~~~-p~k 82 (299)
|.++ |++
T Consensus 378 ~~~r~~~~ 385 (426)
T PF13520_consen 378 DLKRIPYR 385 (426)
T ss_dssp SSGH-HHH
T ss_pred CcCCCCcc
Confidence 7755 444
No 69
>PRK11021 putative transporter; Provisional
Probab=98.55 E-value=3.9e-07 Score=83.74 Aligned_cols=72 Identities=15% Similarity=0.147 Sum_probs=58.5
Q ss_pred CeeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHH-----hcChHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Q psy16475 1 MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLF-----TSDVFLLITYSSFVESAFIMISVCGILYLRYT 73 (299)
Q Consensus 1 ~~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~-----~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~ 73 (299)
++|+|||||.+||+|+|+| |+|+|+++++++.+++.+... ..+++.+.+..+......|.++..+..+++++
T Consensus 286 ~l~a~ardg~lP~~~~k~~-~~~tP~~ail~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~~~l~~~ 362 (410)
T PRK11021 286 LVWSQAREGRPPSYLARLS-ARGVPVNALNAVLGCCAVSILLIYALGLNLEALIAYANGIFVLIYLLCMLAACKLLKG 362 (410)
T ss_pred HHHHHHccCCccHHHHhhc-cCCCcHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3689999999999999999 789999999988776665432 24677888888877788899888888887753
No 70
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=98.55 E-value=3.6e-07 Score=85.55 Aligned_cols=85 Identities=16% Similarity=0.199 Sum_probs=61.0
Q ss_pred CeeeccccCCch--hhhhhhcCCCCCchHHHHHHHHHHHHHHHh--cC---hHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Q psy16475 1 MCFVGARYDHFP--VMLSHINLSRFTPTPSLVFLNILSLFMLFT--SD---VFLLITYSSFVESAFIMISVCGILYLRYT 73 (299)
Q Consensus 1 ~~~a~a~~g~lP--~~~~~~~~~~~~P~~ail~~~vi~~i~~~~--~~---~~~l~~~~~~~~~~~~~~~~~g~~~~~~~ 73 (299)
++|+|||||.+| ++|+|+|||+++|++++++..+++.++... ++ ++.+.+..+......|.....+....|.+
T Consensus 323 ~~~a~Ardg~lP~s~~~~~v~~r~~tP~~A~~l~~~i~~~~~~i~~~~~~af~~l~s~~~~~~~~~Y~~~~~~~l~~~~~ 402 (475)
T TIGR03428 323 LMFSMARDGKLPASAQLSRVHPRTGTPILPSIVIGVLCIGILLINVGNSALFATLASVCIVLIYLAYLLVTVPLLLRRLR 402 (475)
T ss_pred HHHHHHhcCCCcchHHhcccCCCCCCcHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 368999999999 489999999999999999998888765543 22 34555666666667777766666665544
Q ss_pred C-----C-CCCCCceehh
Q psy16475 74 Q-----P-DMHRPIKVSL 85 (299)
Q Consensus 74 ~-----~-E~~~p~kiP~ 85 (299)
. + ..+.|++.+|
T Consensus 403 ~~~~~~~~~~~g~f~lg~ 420 (475)
T TIGR03428 403 GWPRGDQTDPAGLFSLGR 420 (475)
T ss_pred ccCCccCCCCCCCCCCch
Confidence 2 1 1345677776
No 71
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=98.55 E-value=3.7e-07 Score=83.77 Aligned_cols=98 Identities=18% Similarity=0.284 Sum_probs=64.7
Q ss_pred CeeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHHhc------ChHHHHHHhhHH---HHHHHHHHHHHHHHHH
Q psy16475 1 MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTS------DVFLLITYSSFV---ESAFIMISVCGILYLR 71 (299)
Q Consensus 1 ~~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~~~------~~~~l~~~~~~~---~~~~~~~~~~g~~~~~ 71 (299)
|+|+||+||+.||+|+|+| |+|+|++|++++.+.+.+..+.. .++.+.+.++.+ .|....++..=+...-
T Consensus 351 ~L~sLA~~g~APk~f~~~~-r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~~i~W~~I~~shirFR~A~ 429 (541)
T COG0833 351 MLYSLAKQGKAPKIFAKVD-RRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSGFIAWGSICLSHIRFRRAM 429 (541)
T ss_pred HHHHHHhcCCCchHHHhhC-CCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999 88999999999999888766542 145566655544 4445555554444444
Q ss_pred hcCCCC--CCCceehh--HHHHHHHHHHHHHH
Q psy16475 72 YTQPDM--HRPIKVSL--WVPISFVLICVFLV 99 (299)
Q Consensus 72 ~~~~E~--~~p~kiP~--~~~~~~~~~~~~~i 99 (299)
++++.. +-|+|.|. ..++..++.+.+.+
T Consensus 430 ~~QG~s~~~L~yks~~~p~g~~~~~~~~~li~ 461 (541)
T COG0833 430 KAQGRSLDELPYKSPFGPYGPIYGLILCILIL 461 (541)
T ss_pred HHcCCChhhcCccCCCccHHHHHHHHHHHHHH
Confidence 444442 23788555 44444444444333
No 72
>KOG1286|consensus
Probab=98.18 E-value=4.6e-06 Score=78.60 Aligned_cols=71 Identities=13% Similarity=0.147 Sum_probs=59.8
Q ss_pred eeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHHhcC------hHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Q psy16475 2 CFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTSD------VFLLITYSSFVESAFIMISVCGILYLRYT 73 (299)
Q Consensus 2 ~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~~~~------~~~l~~~~~~~~~~~~~~~~~g~~~~~~~ 73 (299)
+|+|||||++||+|+++|++ |+|+.+++++.+.+.+.....+ ++++.+..+.+....+.....+....|+.
T Consensus 347 l~amA~~G~~Pk~f~~v~~~-g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~tl~~w~~i~~~~i~~R~a 423 (554)
T KOG1286|consen 347 LYALAKDGLAPKFFARVDRR-GVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSIGTLFAWTLVALSHLRFRYA 423 (554)
T ss_pred HHHHHhcCCcchHHhhcCCC-CCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhHHHHHHHHHHHHHHeeeeec
Confidence 58999999999999999965 9999999999999988776544 38888888888888887777777777665
No 73
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=98.08 E-value=4.2e-05 Score=68.96 Aligned_cols=77 Identities=16% Similarity=0.121 Sum_probs=64.2
Q ss_pred chhhhhcCCCCCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHh--hhccCCCCCCCccchhHHHH
Q psy16475 163 PAMLSHINISRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGILY--LRYTQPDMHRPIKVSLWVPI 240 (299)
Q Consensus 163 P~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~~~~~~ 240 (299)
-+.|+|.++| +|+.+..+...+...+....+++.+.+++....++.|-+.....+. +||+.|+.+++||.+.....
T Consensus 293 a~~f~~~~~k--~~y~~~v~~~~l~s~~ia~~Gl~~Ii~~~~PvL~~~YP~~i~lill~ll~~~~~~~~~~y~~~~~~~~ 370 (378)
T TIGR00796 293 SEYFHKLVPK--LSYKTWVIVFTLFSFIVANLGLTQIISISIPVLMIIYPLAIVLILLSFLRKLWDSKRAVYQITLIVAL 370 (378)
T ss_pred HHHHHHhcCC--CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeehHHHHHH
Confidence 3678888764 9999999888888777777789999999999999999998888776 88888888899999876443
Q ss_pred H
Q psy16475 241 S 241 (299)
Q Consensus 241 ~ 241 (299)
+
T Consensus 371 ~ 371 (378)
T TIGR00796 371 L 371 (378)
T ss_pred H
Confidence 3
No 74
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=97.98 E-value=8e-06 Score=76.57 Aligned_cols=73 Identities=15% Similarity=0.195 Sum_probs=51.1
Q ss_pred CeeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHHhcC------hHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Q psy16475 1 MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTSD------VFLLITYSSFVESAFIMISVCGILYLRYT 73 (299)
Q Consensus 1 ~~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~~~~------~~~l~~~~~~~~~~~~~~~~~g~~~~~~~ 73 (299)
++|+|||||.+|+++.+.|+|+|+|++|++++.+++.+..+..+ ++.+.+..+......+.....+....|++
T Consensus 314 ~l~ama~dg~lP~~~~~~~~k~~~P~~Ai~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~r~~ 392 (478)
T PF00324_consen 314 LLYAMARDGLLPKKFFARHPKNGVPYVAILVSSIISLLVLLLGSFSPGIVFNWLLNISTISNLIVYILINISYIRFRKK 392 (478)
T ss_pred eehhhhhhhhhhhhhhhhhhcCCceEEEEeeehhchheeeeeccchhhHHHHHHhhhhhhhhhhHHHhhhhhhhhhhhh
Confidence 47999999999966666677999999999999888877665322 22334444455555566666666656555
No 75
>KOG1289|consensus
Probab=97.81 E-value=5.2e-05 Score=69.90 Aligned_cols=52 Identities=17% Similarity=0.234 Sum_probs=41.4
Q ss_pred eeeccccCCch--hhhhhhcCCCCCchHHHHHHHHHHHHHHHh--cChHHHHHHhh
Q psy16475 2 CFVGARYDHFP--VMLSHINLSRFTPTPSLVFLNILSLFMLFT--SDVFLLITYSS 53 (299)
Q Consensus 2 ~~a~a~~g~lP--~~~~~~~~~~~~P~~ail~~~vi~~i~~~~--~~~~~l~~~~~ 53 (299)
.|+.||||.+| ++++|+||+.++|.+|+++..+++.++.+. .+...+....+
T Consensus 366 v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~s~~Af~Alfs 421 (550)
T KOG1289|consen 366 VYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLILASATAFNALFS 421 (550)
T ss_pred HhhhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 58999999999 999999988899999999999988876653 44444444433
No 76
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=97.11 E-value=0.006 Score=55.45 Aligned_cols=76 Identities=7% Similarity=-0.100 Sum_probs=42.3
Q ss_pred ccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHh--ccH-HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCccc
Q psy16475 158 RYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFT--SDV-FLLITYSSFVESAFIMISVCGILYLRYTQPDMHRPIKV 234 (299)
Q Consensus 158 ~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~--~~~-~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 234 (299)
+|+ +++.+++.|++++ |..+..++.+..+++... ..+ ..+.........+...+..+-..+.|||+|+ .+||.
T Consensus 292 ~d~-l~~~~~~~~~~~~-~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G~~~~~~~~~~p~l~~~~~r~~~~~--~~~~~ 367 (381)
T TIGR00837 292 FDY-LADLFKFDDSKKG-RFKTGLLTFLPPLVFALFYPEGFLYAIGYAGLAATIWAVIIPALLAWKARKKFPN--AGYRV 367 (381)
T ss_pred HHH-HHHHhCCCcccCC-CchhhhhhHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCccc
Confidence 355 7777877664444 778877777777766543 223 3333333222233334444444455655553 48998
Q ss_pred hhH
Q psy16475 235 SLW 237 (299)
Q Consensus 235 ~~~ 237 (299)
|..
T Consensus 368 ~~~ 370 (381)
T TIGR00837 368 WGG 370 (381)
T ss_pred cCC
Confidence 875
No 77
>KOG2082|consensus
Probab=97.06 E-value=0.0043 Score=59.31 Aligned_cols=97 Identities=13% Similarity=0.104 Sum_probs=67.9
Q ss_pred eeeccccCCch--hhhhhhcCCCCCchHHHHHHHHHHHHHHHhcChHHHHHHhhHHHHHHHHHHHHHHHHHHh-cCCCCC
Q psy16475 2 CFVGARYDHFP--VMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGILYLRY-TQPDMH 78 (299)
Q Consensus 2 ~~a~a~~g~lP--~~~~~~~~~~~~P~~ail~~~vi~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~-~~~E~~ 78 (299)
++|.|||+.+| +.|+|.+ ++|-|..|++++.+++-..++.++.+.+....+......|.+...+...-.. +.|..+
T Consensus 522 LQAIAkD~IiPfL~~F~~~~-~ngEPt~aLlLT~~Ice~gILigslD~iApilsmFFLMCY~fVNLaCavqtLLrtPnWR 600 (1075)
T KOG2082|consen 522 LQAIAKDDIIPFLAPFGHGK-ANGEPTWALLLTAIICECGILIGSLDLIAPILSMFFLMCYLFVNLACAVQTLLRTPNWR 600 (1075)
T ss_pred HHHHhhcCccchhhhhcccc-CCCCccHHHHHHHHHHHhhheeechhHHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCC
Confidence 67899999999 9999977 9999999999999999998888999988877777666666665443333322 234554
Q ss_pred CCce-ehhHHHHHHHHHHHHHH
Q psy16475 79 RPIK-VSLWVPISFVLICVFLV 99 (299)
Q Consensus 79 ~p~k-iP~~~~~~~~~~~~~~i 99 (299)
..+| .-..++.++...++.++
T Consensus 601 PRfkyyHW~LSflG~sLC~~iM 622 (1075)
T KOG2082|consen 601 PRFKYYHWSLSFLGASLCLAIM 622 (1075)
T ss_pred ccchhhhhHHHHHHHHHHHHHH
Confidence 4445 32245555544444433
No 78
>KOG2083|consensus
Probab=96.95 E-value=0.0025 Score=59.44 Aligned_cols=113 Identities=11% Similarity=0.107 Sum_probs=88.2
Q ss_pred ccccchhhhhhhhhhhccccccCccc--hhhhhcCCCCCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Q psy16475 138 TRSFNALTYFVQKLMCFVGARYGHFP--AMLSHINISRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISV 215 (299)
Q Consensus 138 ~~~~~~~~~~~sR~~~~~~a~dg~lP--~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 215 (299)
.++..++...+.++.. ++++|...| .+++|-.+|++.|..+.+++..++......++.+.+.-+.+......|....
T Consensus 328 LSsalsslVsap~V~Q-aL~kd~~yp~i~~f~KgyGkn~~Plrg~~l~~~~av~fi~igeln~iapiis~FfL~syAlin 406 (643)
T KOG2083|consen 328 LSSALSSLVSAPKVLQ-ALCKDSLYPSILFFAKGYGKNKEPLRGYLLTFLTAVSFIAIGELNIIAPIISNFFLLSYALIN 406 (643)
T ss_pred HHHHHHHHHhhhHHHH-HHHhcCCCccHHHHHccCCccccchHHHHHHHHhHheeEEecccceeccchhhhhhhhhhccc
Confidence 3556677888999998 899999999 6789999999999999999999998887788888888888888999999998
Q ss_pred HHHHhhhccCCCCCCC-ccch-hHHHHHHHHHHHHHHH
Q psy16475 216 CGILYLRYTQPDMHRP-IKVS-LWVPISFVLICVFLVV 251 (299)
Q Consensus 216 ~~~~~~r~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~ 251 (299)
.+.+.-+-..++..|| ++.. .|...++.+.++.+.+
T Consensus 407 f~~f~aSl~~s~~wRp~f~~yn~wVSllGalKOG~ImF 444 (643)
T KOG2083|consen 407 FSCFHASLAISEGWRPSFKFYNAWVSLLGALLCLAIMF 444 (643)
T ss_pred hhhhhhhhccccccCchhhhHHHHHHHHHHHHHHHHHH
Confidence 8887666555555443 3333 2566666655555444
No 79
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=94.40 E-value=0.42 Score=43.36 Aligned_cols=71 Identities=15% Similarity=0.110 Sum_probs=56.9
Q ss_pred hhhhhhcCCCCCchHHHHHHHHHHHHHHHhcChHHHHHHhhHHHHHHHHHHHHHHHH--HHhcCCCCCCCceehh
Q psy16475 13 VMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGILY--LRYTQPDMHRPIKVSL 85 (299)
Q Consensus 13 ~~~~~~~~~~~~P~~ail~~~vi~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~--~~~~~~E~~~p~kiP~ 85 (299)
++|+|+++| .|+.+.++...+....+...+.+++.++.....+..|-.+...... +|++.+|.++|+|.|.
T Consensus 294 ~~f~~~~~k--~~y~~~v~~~~l~s~~ia~~Gl~~Ii~~~~PvL~~~YP~~i~lill~ll~~~~~~~~~~y~~~~ 366 (378)
T TIGR00796 294 EYFHKLVPK--LSYKTWVIVFTLFSFIVANLGLTQIISISIPVLMIIYPLAIVLILLSFLRKLWDSKRAVYQITL 366 (378)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeehHH
Confidence 678898754 9999988888777777777889999999988888877776655555 7777788888999764
No 80
>PF13906 AA_permease_C: C-terminus of AA_permease
Probab=91.50 E-value=0.51 Score=29.45 Aligned_cols=48 Identities=19% Similarity=0.164 Sum_probs=35.7
Q ss_pred ccchh--HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhhhheeeeeeeec
Q psy16475 232 IKVSL--WVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLIGVKWR 282 (299)
Q Consensus 232 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (299)
||.|. +.|.+.+...+++..... .....-..++.++|.++|+....|+
T Consensus 1 F~vP~vP~~P~~si~~ni~Lm~~L~---~~twirf~iWl~iGl~iYf~YG~~h 50 (51)
T PF13906_consen 1 FKVPLVPFLPALSILINIYLMAQLS---ALTWIRFGIWLAIGLVIYFGYGIRH 50 (51)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhh---HhHHHHHHHHHHHHHHHHHheeeec
Confidence 56666 589999999999988653 3466666778888988888665554
No 81
>KOG1288|consensus
Probab=91.21 E-value=0.54 Score=45.24 Aligned_cols=81 Identities=14% Similarity=0.072 Sum_probs=61.5
Q ss_pred eeeccccCCch--hhhhhhcCCCCCchHHHHHHHHHHHHHHHhcChHHHHHHhhHHHHHHHHHHHHHHHHHHhcC-CCCC
Q psy16475 2 CFVGARYDHFP--VMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGILYLRYTQ-PDMH 78 (299)
Q Consensus 2 ~~a~a~~g~lP--~~~~~~~~~~~~P~~ail~~~vi~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~-~E~~ 78 (299)
+.+.|||..+| -.|+|.....+.|+.|+.++-++.-+.++.|+.+.+..+.+.....+|+....+...+...+ |..+
T Consensus 398 L~alakD~lfg~ll~fak~~s~~~nP~~av~vtw~lvqlvll~g~~N~iA~~it~~FLlty~~vNLacl~LeissAPNFR 477 (945)
T KOG1288|consen 398 LEALAKDDLFGGLLFFAKGSSYDGNPYVAVGVTWLLVQLVLLWGDINKIASMITMTFLLTYGAVNLACLLLEISSAPNFR 477 (945)
T ss_pred HHHHhhcccchhhheeeeccccCCCceeeeeHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Confidence 45789999999 67888877889999999999888887777788888888877777777776666666555554 4443
Q ss_pred CCce
Q psy16475 79 RPIK 82 (299)
Q Consensus 79 ~p~k 82 (299)
.-+|
T Consensus 478 PtFk 481 (945)
T KOG1288|consen 478 PTFK 481 (945)
T ss_pred chhh
Confidence 3355
No 82
>PHA02764 hypothetical protein; Provisional
Probab=86.44 E-value=5.9 Score=34.88 Aligned_cols=28 Identities=18% Similarity=0.080 Sum_probs=24.8
Q ss_pred hhhhhhhccccccCccchhhhhcCCCCCCch
Q psy16475 147 FVQKLMCFVGARYGHFPAMLSHINISRFTPT 177 (299)
Q Consensus 147 ~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~ 177 (299)
-.||..+ +|+-|+.+|+.|+|+|| ++|.
T Consensus 258 ~~srli~-~~~fd~~lpe~f~k~~~--nv~~ 285 (399)
T PHA02764 258 IQSRLIQ-TMSFDKVLPEKFSKINP--NVLL 285 (399)
T ss_pred hHHHHHH-HHHhhhhchHHHhccCC--Ccee
Confidence 4689999 99999999999999973 8887
No 83
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=75.80 E-value=12 Score=33.98 Aligned_cols=34 Identities=3% Similarity=-0.122 Sum_probs=21.0
Q ss_pred ccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHHh
Q psy16475 7 RYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFT 42 (299)
Q Consensus 7 ~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~~ 42 (299)
+|+ +++.+++.|++++ |..+.++..+...++...
T Consensus 292 ~d~-l~~~~~~~~~~~~-~~~~~~~~~~~pl~~a~~ 325 (381)
T TIGR00837 292 FDY-LADLFKFDDSKKG-RFKTGLLTFLPPLVFALF 325 (381)
T ss_pred HHH-HHHHhCCCcccCC-CchhhhhhHHhHHHHHHH
Confidence 455 7778888664444 666666666666655433
No 84
>PHA02764 hypothetical protein; Provisional
Probab=72.34 E-value=5.1 Score=35.29 Aligned_cols=23 Identities=17% Similarity=-0.051 Sum_probs=19.9
Q ss_pred eeeccccCCchhhhhhhcCCCCCch
Q psy16475 2 CFVGARYDHFPVMLSHINLSRFTPT 26 (299)
Q Consensus 2 ~~a~a~~g~lP~~~~~~~~~~~~P~ 26 (299)
.++||-|+.+|+.|+|+|| ++|+
T Consensus 263 i~~~~fd~~lpe~f~k~~~--nv~~ 285 (399)
T PHA02764 263 IQTMSFDKVLPEKFSKINP--NVLL 285 (399)
T ss_pred HHHHHhhhhchHHHhccCC--Ccee
Confidence 4789999999999999984 6777
No 85
>COG4025 Predicted membrane protein [Function unknown]
Probab=71.55 E-value=58 Score=27.35 Aligned_cols=13 Identities=15% Similarity=0.092 Sum_probs=8.8
Q ss_pred hhhhccccccCccc
Q psy16475 150 KLMCFVGARYGHFP 163 (299)
Q Consensus 150 R~~~~~~a~dg~lP 163 (299)
|-.. .+.||+.+|
T Consensus 58 e~v~-e~~re~~i~ 70 (284)
T COG4025 58 EKVM-EKVREFQIP 70 (284)
T ss_pred HHHH-HHHhcCCCc
Confidence 3445 578888876
No 86
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=68.47 E-value=8.3 Score=34.57 Aligned_cols=38 Identities=8% Similarity=0.092 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCCceehhHHHHHHHHHHHH
Q psy16475 60 IMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVF 97 (299)
Q Consensus 60 ~~~~~~g~~~~~~~~~E~~~p~kiP~~~~~~~~~~~~~ 97 (299)
..+++.|++......+|.|||+|.||+...........
T Consensus 188 ~~~~f~g~~i~~~~~~~~~~~~~~~k~~~~~~~~~~~l 225 (359)
T TIGR00912 188 VTFAFGEIEIFFLLFPLLSKKKKIKKSIIKAIIIGVLL 225 (359)
T ss_pred hhhhhHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHH
Confidence 45677888988888889988888888554444443333
No 87
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=67.50 E-value=32 Score=28.30 Aligned_cols=18 Identities=11% Similarity=0.047 Sum_probs=8.4
Q ss_pred HHHHHHhhhheeeeeeee
Q psy16475 264 AVLITLSGVPVYLIGVKW 281 (299)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~ 281 (299)
..++.++..+.+++++||
T Consensus 183 ~iiig~i~~~~~~~lkkk 200 (206)
T PF06570_consen 183 YIIIGVIAFALRFYLKKK 200 (206)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444455555544
No 88
>KOG1304|consensus
Probab=55.98 E-value=94 Score=29.00 Aligned_cols=39 Identities=13% Similarity=0.249 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHhcCCCCCCCceeh---hHHHHHHHHHHHHHH
Q psy16475 61 MISVCGILYLRYTQPDMHRPIKVS---LWVPISFVLICVFLV 99 (299)
Q Consensus 61 ~~~~~g~~~~~~~~~E~~~p~kiP---~~~~~~~~~~~~~~i 99 (299)
.+++-|.-.+--.++++|+|++.| +.+.....+++.+++
T Consensus 251 ifafEGig~VLPlEn~Mk~P~~F~g~~gVLn~~M~~V~~ly~ 292 (449)
T KOG1304|consen 251 IFAFEGIGMVLPLENSMKKPQKFPGPFGVLNLGMGIVTLLYI 292 (449)
T ss_pred HHHhccceEEEehhhcccChhhcCCccchHHHHHHHHHHHHH
Confidence 344444444444456789999866 344444444444444
No 89
>PF14256 YwiC: YwiC-like protein
Probab=50.50 E-value=1.1e+02 Score=23.17 Aligned_cols=30 Identities=7% Similarity=-0.222 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCCccchh
Q psy16475 206 VESAFIMISVCGILYLRYTQPDMHRPIKVSL 236 (299)
Q Consensus 206 ~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~ 236 (299)
+-...|....-....+|+|++ .+++++.+.
T Consensus 33 aw~~~yl~~~p~~~~~k~r~~-~~~~~~~~~ 62 (129)
T PF14256_consen 33 AWLFGYLAFYPFLLWLKQRRR-RRPRYLKWA 62 (129)
T ss_pred HHHHHHHHHHHHHHHHhcccc-cchhHHHHH
Confidence 334455555555666666553 122354444
No 90
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=49.57 E-value=2.1e+02 Score=26.58 Aligned_cols=71 Identities=10% Similarity=0.034 Sum_probs=39.9
Q ss_pred hhhhhcCCCCCCchhHH-HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH--hhhccCCCCCCCccchhH
Q psy16475 164 AMLSHINISRFTPTPSL-VFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGIL--YLRYTQPDMHRPIKVSLW 237 (299)
Q Consensus 164 ~~~~~~~~~~~~P~~ai-~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~r~~~~~~~~~~~~~~~ 237 (299)
+.|.+..| +.++... ...++++.+.... +++++++++.....+.|=....-.+ ..++..++.+..||...+
T Consensus 300 ~yf~~~~~--kisY~~~v~i~~i~S~~ian~-Gl~~Ii~~s~PiL~~iYP~~IvLIll~l~~~~~~~~~~~y~~~v~ 373 (427)
T PF05525_consen 300 EYFSELFP--KISYKVWVIIFTIFSFIIANL-GLDQIIKISVPILMFIYPVAIVLILLNLFDKFIKNKKIVYRGTVL 373 (427)
T ss_pred HHHHHHhc--ccChHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCceeeeeeh
Confidence 35555553 4444433 3444555555544 4999999999999888866543322 223333332345666554
No 91
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=48.06 E-value=2.3e+02 Score=26.15 Aligned_cols=42 Identities=7% Similarity=0.093 Sum_probs=23.1
Q ss_pred hccHHHHHHHHHHHHHHHHHH-HHHHHHhhhccCCCCCCCccchh
Q psy16475 193 TSDVFLLITYSSFVESAFIMI-SVCGILYLRYTQPDMHRPIKVSL 236 (299)
Q Consensus 193 ~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~~~~~~ 236 (299)
.+.|....++++....+-..+ ......+.|++ ++ +++||.|.
T Consensus 330 P~~F~~al~~aG~~~ail~~ilP~~m~~~~r~~-~~-~~~y~v~g 372 (403)
T PRK15132 330 PRGFVMALGYAGVALAVLALLLPSLLVWQSRKQ-NP-QAGYRVKG 372 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CC-CCCccCCC
Confidence 356777777777655444333 34444444543 32 35688765
No 92
>KOG1303|consensus
Probab=46.73 E-value=67 Score=29.95 Aligned_cols=42 Identities=21% Similarity=0.263 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCceehhHHHHHHHHHHHHHHHH
Q psy16475 60 IMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVT 101 (299)
Q Consensus 60 ~~~~~~g~~~~~~~~~E~~~p~kiP~~~~~~~~~~~~~~i~~ 101 (299)
+.++|.|-.....-+.++|+|.+.+++..+.+......++..
T Consensus 237 iaFaf~gH~v~peIq~tMk~p~~f~~~~lis~~~~~~~y~~v 278 (437)
T KOG1303|consen 237 IAFAYGGHAVLPEIQHTMKSPPKFKKALLISYIIVTFLYFPV 278 (437)
T ss_pred eeeeecCCeeeeehHhhcCCchhhhhHHHHHHHHHHHHHHHH
Confidence 344454444444445567778777775555555544444433
No 93
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=44.70 E-value=2.5e+02 Score=25.70 Aligned_cols=41 Identities=15% Similarity=0.247 Sum_probs=24.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHH-HHhhhccCCCCCCCccchh
Q psy16475 194 SDVFLLITYSSFVESAFIMISVCG-ILYLRYTQPDMHRPIKVSL 236 (299)
Q Consensus 194 ~~~~~l~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~~ 236 (299)
+.|....++++....+.+.+.+.. ..+.|++++ +++|+.+.
T Consensus 334 ~~F~~al~~aG~~~~il~~ilP~~m~~~~r~~~~--~~~~~~~g 375 (394)
T PF03222_consen 334 NGFLIALGYAGIGIAILLGILPALMVWKARKRKP--KQPYRVPG 375 (394)
T ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHHHcccC--CCCeEEeC
Confidence 457788888886665555555544 344444443 34577654
No 94
>PRK11375 allantoin permease; Provisional
Probab=43.78 E-value=92 Score=29.43 Aligned_cols=14 Identities=21% Similarity=0.472 Sum_probs=8.3
Q ss_pred hHHHHHHHHHHHHH
Q psy16475 178 PSLVFLNILSLFML 191 (299)
Q Consensus 178 ~ai~~~~~i~~~~~ 191 (299)
++.++.++++.++.
T Consensus 349 ~~~~i~~iig~~~~ 362 (484)
T PRK11375 349 NGVLIASIISLLIC 362 (484)
T ss_pred hHHHHHHHHHHHhc
Confidence 46666666665544
No 95
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=42.37 E-value=1.7e+02 Score=28.12 Aligned_cols=70 Identities=14% Similarity=0.210 Sum_probs=38.1
Q ss_pred cccccCccchh-hhhcCCCC----CCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH-HHHHHhhhcc
Q psy16475 155 VGARYGHFPAM-LSHINISR----FTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMIS-VCGILYLRYT 224 (299)
Q Consensus 155 ~~a~dg~lP~~-~~~~~~~~----~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~r~~ 224 (299)
+.-+-|.+||. ..+++++. -.|...-++......+...+.+-+.+.+.-+++......++ .+..+.+|++
T Consensus 303 Qai~Lg~~Pr~~I~hTS~~~~GQIYIP~vNw~L~i~~i~vvl~F~~S~~la~AYGiAVt~tM~iTT~L~~~v~~~~ 378 (534)
T PF02705_consen 303 QAIQLGYFPRLKIVHTSEKEEGQIYIPEVNWLLMIGVIAVVLGFRSSSNLAAAYGIAVTGTMLITTILLFLVMRRV 378 (534)
T ss_pred HHHHhCCCCceEEEECCcccCCcEechHHHHHHHHHHHhhheEECChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566999962 33444332 24666655555444444445566666666666666555554 4444445544
No 96
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=30.22 E-value=46 Score=19.54 Aligned_cols=11 Identities=9% Similarity=0.114 Sum_probs=4.3
Q ss_pred Hhhhheeeeee
Q psy16475 269 LSGVPVYLIGV 279 (299)
Q Consensus 269 ~~~~~~~~~~~ 279 (299)
+++...|.++|
T Consensus 27 vl~~~l~~~~r 37 (40)
T PF08693_consen 27 VLGAFLFFWYR 37 (40)
T ss_pred HHHHHhheEEe
Confidence 33333444333
No 97
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=29.89 E-value=2.3e+02 Score=21.01 Aligned_cols=20 Identities=10% Similarity=0.022 Sum_probs=13.5
Q ss_pred CCCCchhHHHHHHHHHHHHH
Q psy16475 172 SRFTPTPSLVFLNILSLFML 191 (299)
Q Consensus 172 ~~~~P~~ai~~~~~i~~~~~ 191 (299)
|.+.+.....+..++.+...
T Consensus 27 k~~~~~~~~~~~~~v~i~~~ 46 (146)
T PF14667_consen 27 KTKWPFIITLIGAIVNIILN 46 (146)
T ss_pred CchHHHHHHHHHHHHHHHHH
Confidence 66777777777777766544
No 98
>KOG2083|consensus
Probab=29.22 E-value=57 Score=31.44 Aligned_cols=82 Identities=5% Similarity=-0.019 Sum_probs=51.9
Q ss_pred eeeccccCCch--hhhhhhcCCCCCchHHHHHHHHHHHHHHHhcChHHHHHHhhHHHHHHHHHHHHHHHHHHhcC-CCCC
Q psy16475 2 CFVGARYDHFP--VMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGILYLRYTQ-PDMH 78 (299)
Q Consensus 2 ~~a~a~~g~lP--~~~~~~~~~~~~P~~ail~~~vi~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~-~E~~ 78 (299)
++++.+|...| .+++|-.++++-|..+-.+...+..-....++.+.+....+......+...--+.+..+... ++.+
T Consensus 342 ~QaL~kd~~yp~i~~f~KgyGkn~~Plrg~~l~~~~av~fi~igeln~iapiis~FfL~syAlinf~~f~aSl~~s~~wR 421 (643)
T KOG2083|consen 342 LQALCKDSLYPSILFFAKGYGKNKEPLRGYLLTFLTAVSFIAIGELNIIAPIISNFFLLSYALINFSCFHASLAISEGWR 421 (643)
T ss_pred HHHHHhcCCCccHHHHHccCCccccchHHHHHHHHhHheeEEecccceeccchhhhhhhhhhccchhhhhhhhccccccC
Confidence 35678999999 67889899999999998888777776666666655544444444444444422333333333 3444
Q ss_pred CCcee
Q psy16475 79 RPIKV 83 (299)
Q Consensus 79 ~p~ki 83 (299)
.+++.
T Consensus 422 p~f~~ 426 (643)
T KOG2083|consen 422 PSFKF 426 (643)
T ss_pred chhhh
Confidence 45553
No 99
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=28.96 E-value=4.8e+02 Score=24.26 Aligned_cols=72 Identities=15% Similarity=0.162 Sum_probs=39.3
Q ss_pred hhhhhcCCCCCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH--HHHhhhccCCCCCCCccchhH
Q psy16475 164 AMLSHINISRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVC--GILYLRYTQPDMHRPIKVSLW 237 (299)
Q Consensus 164 ~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~r~~~~~~~~~~~~~~~ 237 (299)
++|.|.-||-.-.. ...+..+++.+..-. ++++++.++.......|=+... .+...||..++.++.|+...+
T Consensus 302 efF~~~~p~~SY~~-~v~if~i~sflvan~-GL~~Ii~isvPvL~~iYPiaI~Lv~l~~~~k~~~~~~~~y~~~l~ 375 (431)
T COG1114 302 EFFSKLVPKLSYKT-WVIIFTLISFLVANL-GLEQIIKISVPVLTAIYPIAIALVLLSFARKLWKNSKRVYRLTLL 375 (431)
T ss_pred HHHHHhcccccHHH-HHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCcchhHHHHHH
Confidence 45666554322222 233344445444433 5999999999888888765533 233345444444445555543
No 100
>COG4984 Predicted membrane protein [Function unknown]
Probab=26.49 E-value=2.4e+02 Score=26.69 Aligned_cols=20 Identities=20% Similarity=0.026 Sum_probs=10.2
Q ss_pred HHHHHHHhhhheeeeeeeec
Q psy16475 263 MAVLITLSGVPVYLIGVKWR 282 (299)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~ 282 (299)
....+.+...++|++.+.|+
T Consensus 207 ~ll~wla~~g~vY~~~~yr~ 226 (644)
T COG4984 207 VLLSWLASAGLVYYYKEYRR 226 (644)
T ss_pred HHHHHHHHhheeeeeeeccc
Confidence 33445555555666554343
No 101
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=25.91 E-value=2.3e+02 Score=26.64 Aligned_cols=27 Identities=19% Similarity=0.253 Sum_probs=14.7
Q ss_pred HHHHHHHHHhhhheeeeeeeecCCchh
Q psy16475 261 VGMAVLITLSGVPVYLIGVKWRDKPEA 287 (299)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (299)
.++.+.++++|++++++.+|++.+|..
T Consensus 258 Q~lSl~~il~gl~~~~~~~~~~~~~~~ 284 (460)
T PRK13108 258 SFTSTFVFIGAVVYIILAPKGREAPGA 284 (460)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCccc
Confidence 355556666666555555554445433
No 102
>PF13965 SID-1_RNA_chan: dsRNA-gated channel SID-1
Probab=22.50 E-value=6.2e+02 Score=24.65 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhhh-ccCCCC
Q psy16475 208 SAFIMISVCGILYLR-YTQPDM 228 (299)
Q Consensus 208 ~~~~~~~~~~~~~~r-~~~~~~ 228 (299)
...|++..++.+++. +|||+.
T Consensus 347 ~fmyvi~~L~~lkiyq~RH~di 368 (570)
T PF13965_consen 347 SFMYVIAGLCMLKIYQKRHPDI 368 (570)
T ss_pred HHHHHHHHHHHHHHHHhhCCCC
Confidence 455666666666655 445654
Done!