Query psy16475
Match_columns 299
No_of_seqs 179 out of 2008
Neff 9.5
Searched_HMMs 29240
Date Fri Aug 16 22:16:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16475.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16475hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.8 1.7E-21 5.6E-26 179.0 8.6 218 59-285 199-434 (445)
2 4djk_A Probable glutamate/gamm 99.8 7.8E-21 2.7E-25 177.5 11.7 188 57-254 207-431 (511)
3 3gia_A Uncharacterized protein 99.8 4.1E-19 1.4E-23 163.0 7.8 179 60-251 197-388 (444)
4 3l1l_A Arginine/agmatine antip 98.9 3E-09 1E-13 97.2 8.9 120 2-129 301-429 (445)
5 4djk_A Probable glutamate/gamm 98.9 5.2E-09 1.8E-13 97.3 8.8 82 2-84 316-406 (511)
6 3gia_A Uncharacterized protein 98.4 3E-07 1E-11 83.8 6.6 72 2-75 299-370 (444)
7 2ks1_B Epidermal growth factor 40.2 4.6 0.00016 23.4 -0.5 15 270-284 27-41 (44)
8 2jwa_A Receptor tyrosine-prote 20.3 1.3E+02 0.0046 17.2 4.6 8 218-225 32-39 (44)
9 2jln_A MHP1; hydantoin, transp 13.0 5.3E+02 0.018 23.1 7.4 33 179-214 339-371 (501)
10 2l2t_A Receptor tyrosine-prote 10.1 2.8E+02 0.0097 15.8 5.1 6 220-225 33-38 (44)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.84 E-value=1.7e-21 Score=178.96 Aligned_cols=218 Identities=16% Similarity=0.143 Sum_probs=147.6
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHh----hcchHHH------HHHHHHHHhccceeeee
Q psy16475 59 FIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPI----LEAPREV------GMAVLITLSGVPVYLIG 127 (299)
Q Consensus 59 ~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~----~~~~~~~------~~~~~~~~~g~~~~~~~ 127 (299)
...+++.|+|...+.+||.|||+| +|+++.........+++.... ..++++. .........|-......
T Consensus 199 ~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~ 278 (445)
T 3l1l_A 199 VTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIV 278 (445)
T ss_dssp HHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHH
Confidence 456788999999999999999988 999665555444444333222 1111110 00000000110000000
Q ss_pred eeecccCcccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHh-------ccHHHHH
Q psy16475 128 VKWRDKPEAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFT-------SDVFLLI 200 (299)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~-------~~~~~l~ 200 (299)
.........++.|+.+++.+|.++ +|+|||.+|++|+|+| |+++|+++++++++++.++.+. +.++.+.
T Consensus 279 --~~~~~~~~~~~~~~~~~~~sR~~~-~~a~dg~lP~~~~~~~-~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 354 (445)
T 3l1l_A 279 --SFCAAAGCLGSLGGWTLLAGQTAK-AAADDGLFPPIFARVN-KAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVS 354 (445)
T ss_dssp --HHHHHHHHTTTHHHHHHHHHHHHH-HHHHTTSSCGGGGCCC-TTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHH-HHHhCCCCcHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 000001234788889999999999 9999999999999999 6799999999999987766543 3478999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCCCCccchhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhhhheeeeeee
Q psy16475 201 TYSSFVESAFIMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLIGVK 280 (299)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (299)
++.++..++.|.+..++++++|+|+| .+| ++.....+.++.+.+++..+.. ++.....+.++.++|.++|++.+|
T Consensus 355 ~~~~~~~~~~y~~~~~~~~~~r~~~~-~~r-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~y~~~~~ 429 (445)
T 3l1l_A 355 SVSVIFTLVPYLYTCAALLLLGHGHF-GKA-RPAYLAVTTIAFLYCIWAVVGS---GAKEVMWSFVTLMVITAMYALNYN 429 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSSS-GGG-CTTTHHHHHHHHHHHHHHHHHS---CHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCc-ccc-cchhHHHHHHHHHHHHHHHHHc---CHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999887 333 2333456666666666665433 445667778888889888887765
Q ss_pred ecCCc
Q psy16475 281 WRDKP 285 (299)
Q Consensus 281 ~~~~~ 285 (299)
++++.
T Consensus 430 ~~~~~ 434 (445)
T 3l1l_A 430 RLHKN 434 (445)
T ss_dssp TTCCC
T ss_pred hcccC
Confidence 54433
No 2
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=99.84 E-value=7.8e-21 Score=177.48 Aligned_cols=188 Identities=13% Similarity=0.167 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHh----hcchHHH-----HHHHHHHHhccceeee
Q psy16475 57 SAFIMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPI----LEAPREV-----GMAVLITLSGVPVYLI 126 (299)
Q Consensus 57 ~~~~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~----~~~~~~~-----~~~~~~~~~g~~~~~~ 126 (299)
....++++.|+|...+.+||.|||+| +|+++.........+++...+ ..++++. .........+
T Consensus 207 ~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 280 (511)
T 4djk_A 207 FVAFILSYMGVEASATHVNEMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMS------ 280 (511)
T ss_dssp HHHHHHHHTTGGGGTGGGSSSSCCTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHS------
T ss_pred HHHHHHHHhhHHHHHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHH------
Confidence 34567899999999999999999999 999665544444443333222 1111110 0000000011
Q ss_pred eeeec--ccC----------cccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHH-HHHh
Q psy16475 127 GVKWR--DKP----------EAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLF-MLFT 193 (299)
Q Consensus 127 ~~~~~--~~~----------~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~-~~~~ 193 (299)
..+ ... ....++.|+.+.+.+|.++ ++||||.+|++|+|+| |+++|.+|++++..+..+ +...
T Consensus 281 --~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~-a~ardg~lP~~~~~~~-~~~~P~~ai~~~~~~~~l~~~~~ 356 (511)
T 4djk_A 281 --HVAPEIEWTVRVISALLLLGVLAEIASWIVGPSRGMY-VTAQKNLLPAAFAKMN-KNGVPVTLVISQLVITSIALIIL 356 (511)
T ss_dssp --SSCSSCTTHHHHHHHHHHHHHHHHHHHHTTHHHHHTC-HHHHGGGCSSSCCCCC-SSSCCCHHHHHHHHHHHHHHHHH
T ss_pred --HhCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHccCCcccHHHHhcC-CCCCcHHHHHHHHHHHHHHHHHh
Confidence 111 000 1123677788899999999 9999999999999999 689999999998554333 3333
Q ss_pred cc--------HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCccchh------HHHHHHHHHHHHHHHhhc
Q psy16475 194 SD--------VFLLITYSSFVESAFIMISVCGILYLRYTQPDMHRPIKVSL------WVPISFVLICVFLVVTPI 254 (299)
Q Consensus 194 ~~--------~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 254 (299)
++ ++.+.++.+....+.|.+..++++++|+|+|+.++|||.+. ..+.+.++.+++..+...
T Consensus 357 ~~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (511)
T 4djk_A 357 TNTGGGNNMSFLIALALTVVIYLCAYFMLFIGYIVLVLKHPDLKRTFNIPGGKGVKLVVAIVGLLTSIMAFIVSF 431 (511)
T ss_dssp HSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCCSCCCSSTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeecCCCchHHHHHHHHHHHHHHHHHHeee
Confidence 33 78899999999999999999999999999888889999872 245555555555555443
No 3
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.77 E-value=4.1e-19 Score=162.96 Aligned_cols=179 Identities=15% Similarity=0.104 Sum_probs=123.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCce-ehhHHHHHHHHHHHHHHHHHh----hcchHHHHHH--HHHHHhccceeeeeeeecc
Q psy16475 60 IMISVCGILYLRYTQPDMHRPIK-VSLWVPISFVLICVFLVVTPI----LEAPREVGMA--VLITLSGVPVYLIGVKWRD 132 (299)
Q Consensus 60 ~~~~~~g~~~~~~~~~E~~~p~k-iP~~~~~~~~~~~~~~i~~~~----~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~ 132 (299)
..+++.|+|...+.+||.|||+| +|+++.........+++.... ..++++.... ........+ .......
T Consensus 197 ~~~a~~G~e~~~~~~~e~k~P~r~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~g~~~~ 273 (444)
T 3gia_A 197 FFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKP---FLGNLGF 273 (444)
T ss_dssp GGGGGTHHHHHHTTGGGBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHH---HHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHccCcccchhHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHHH---HhhHHHH
Confidence 34688999999999999999999 999665555444444433222 1222222110 000000000 0000000
Q ss_pred ------cCcccccccchhhhhhhhhhhccccccCccchhhhhcCCCCCCchhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q psy16475 133 ------KPEAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFV 206 (299)
Q Consensus 133 ------~~~~~~~~~~~~~~~~sR~~~~~~a~dg~lP~~~~~~~~~~~~P~~ai~~~~~i~~~~~~~~~~~~l~~~~~~~ 206 (299)
......++.|+.+++.+|.++ +++|||.+|++|+|+| + ++|.++++++++++.++.+..+++.+.++.+..
T Consensus 274 ~~i~~~~~~~~~~~~~~~~~~~sR~l~-a~a~dg~lP~~f~~~~-~-~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~ 350 (444)
T 3gia_A 274 LLISIGALFSISSAMNATIYGGANVAY-SLAKDGELPEFFERKV-W-FKSTEGLYITSALGVLFALLFNMEGVASITSAV 350 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHH-HHHHHSSCCSSCCTTS-C-CSCTHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCCCCHHHhCCC-C-CCCcHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 011234678889999999999 9999999999999988 4 569999999999999888888899999999999
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCCccchhHHHHHHHHHHHHHHH
Q psy16475 207 ESAFIMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVV 251 (299)
Q Consensus 207 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (299)
..+.|.+..++++++||++|+. .+.+.++++.+++..+
T Consensus 351 ~~~~~~~~~~~~~~~r~~~~~~-------~~~~~~~~~~~~~~~~ 388 (444)
T 3gia_A 351 FMVIYLFVILSHYILIDEVGGR-------KEIVIFSFIVVLGVFL 388 (444)
T ss_dssp HHHHHHHHHHHHHHTHHHHCCC-------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCCc-------chHHHHHHHHHHHHHH
Confidence 9999999999999999887542 1445555555554443
No 4
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=98.91 E-value=3e-09 Score=97.16 Aligned_cols=120 Identities=16% Similarity=0.202 Sum_probs=84.6
Q ss_pred eeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHHh-------cChHHHHHHhhHHHHHHHHHHHHHHHHHHhcC
Q psy16475 2 CFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFT-------SDVFLLITYSSFVESAFIMISVCGILYLRYTQ 74 (299)
Q Consensus 2 ~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~~-------~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 74 (299)
+|+|||||.+|++|+|+| |+++|+++++++.+++.++... +.++.+.+..+...+..|.+...+....|++.
T Consensus 301 ~~~~a~dg~lP~~~~~~~-~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~ 379 (445)
T 3l1l_A 301 AKAAADDGLFPPIFARVN-KAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGH 379 (445)
T ss_dssp HHHHHHTTSSCGGGGCCC-TTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHhCCCCcHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 578999999999999999 6899999999998877665542 34677888888888889999999999998876
Q ss_pred CCCCCCceehh--HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHhccceeeeeee
Q psy16475 75 PDMHRPIKVSL--WVPISFVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLIGVK 129 (299)
Q Consensus 75 ~E~~~p~kiP~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 129 (299)
+ +| |.|. .++......+ +...+..++.....+......|.++|...++
T Consensus 380 ~---~~-r~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~y~~~~~ 429 (445)
T 3l1l_A 380 F---GK-ARPAYLAVTTIAFLYC---IWAVVGSGAKEVMWSFVTLMVITAMYALNYN 429 (445)
T ss_dssp S---GG-GCTTTHHHHHHHHHHH---HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred c---cc-ccchhHHHHHHHHHHH---HHHHHHcCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5 22 2232 2333332222 2233344555666677777888887765443
No 5
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=98.86 E-value=5.2e-09 Score=97.29 Aligned_cols=82 Identities=12% Similarity=0.336 Sum_probs=66.1
Q ss_pred eeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHH-HHHhcC--------hHHHHHHhhHHHHHHHHHHHHHHHHHHh
Q psy16475 2 CFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLF-MLFTSD--------VFLLITYSSFVESAFIMISVCGILYLRY 72 (299)
Q Consensus 2 ~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i-~~~~~~--------~~~l~~~~~~~~~~~~~~~~~g~~~~~~ 72 (299)
+++|||||.+|++|+|+| |+++|+++++++.++..+ ++..++ ++.+.+..+......|.+...+....|+
T Consensus 316 l~a~ardg~lP~~~~~~~-~~~~P~~ai~~~~~~~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~~~~~r~ 394 (511)
T 4djk_A 316 MYVTAQKNLLPAAFAKMN-KNGVPVTLVISQLVITSIALIILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIGYIVLVL 394 (511)
T ss_dssp TCHHHHGGGCSSSCCCCC-SSSCCCHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCCcccHHHHhcC-CCCCcHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999 689999999988443332 333333 4566777777788889999999999999
Q ss_pred cCCCCCCCceeh
Q psy16475 73 TQPDMHRPIKVS 84 (299)
Q Consensus 73 ~~~E~~~p~kiP 84 (299)
+.+|.++|+|.|
T Consensus 395 ~~~~~~~~~~~~ 406 (511)
T 4djk_A 395 KHPDLKRTFNIP 406 (511)
T ss_dssp HCCSCCCSCCCS
T ss_pred hCCCCCCCeecC
Confidence 998889999987
No 6
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=98.41 E-value=3e-07 Score=83.83 Aligned_cols=72 Identities=13% Similarity=0.101 Sum_probs=62.7
Q ss_pred eeeccccCCchhhhhhhcCCCCCchHHHHHHHHHHHHHHHhcChHHHHHHhhHHHHHHHHHHHHHHHHHHhcCC
Q psy16475 2 CFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGILYLRYTQP 75 (299)
Q Consensus 2 ~~a~a~~g~lP~~~~~~~~~~~~P~~ail~~~vi~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~ 75 (299)
+|+|||||.+|++|+|+| + ++|.++++++.+++.++....+++.+.+..+......+.+...+....|++.+
T Consensus 299 l~a~a~dg~lP~~f~~~~-~-~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~ 370 (444)
T 3gia_A 299 AYSLAKDGELPEFFERKV-W-FKSTEGLYITSALGVLFALLFNMEGVASITSAVFMVIYLFVILSHYILIDEVG 370 (444)
T ss_dssp HHHHHHHSSCCSSCCTTS-C-CSCTHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHC
T ss_pred HHHHHHCCCCCHHHhCCC-C-CCCcHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 589999999999999988 4 56999999999998888877889999999998888899998888888877653
No 7
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=40.16 E-value=4.6 Score=23.44 Aligned_cols=15 Identities=7% Similarity=-0.119 Sum_probs=7.2
Q ss_pred hhhheeeeeeeecCC
Q psy16475 270 SGVPVYLIGVKWRDK 284 (299)
Q Consensus 270 ~~~~~~~~~~~~~~~ 284 (299)
++..+++++++|+.+
T Consensus 27 i~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 27 VALGIGLFMRRRHIV 41 (44)
T ss_dssp HHHHHHHHHHTTTCC
T ss_pred HHHHHHHHhhhhHhh
Confidence 334445555555444
No 8
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=20.33 E-value=1.3e+02 Score=17.18 Aligned_cols=8 Identities=13% Similarity=0.189 Sum_probs=3.4
Q ss_pred HHhhhccC
Q psy16475 218 ILYLRYTQ 225 (299)
Q Consensus 218 ~~~~r~~~ 225 (299)
.+++|||+
T Consensus 32 ~~~~RRR~ 39 (44)
T 2jwa_A 32 GILIKRRQ 39 (44)
T ss_dssp HHHHHHHC
T ss_pred Hhheehhh
Confidence 33444443
No 9
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=13.00 E-value=5.3e+02 Score=23.05 Aligned_cols=33 Identities=9% Similarity=0.140 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Q psy16475 179 SLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMIS 214 (299)
Q Consensus 179 ai~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 214 (299)
..++.++++.++......+. +.++...+.+.+.
T Consensus 339 ~~~i~~vi~~~i~~~~~~~~---f~~FL~~lg~~l~ 371 (501)
T 2jln_A 339 GVIVSAVVGLLMMPWQFAGV---LNTFLNLLASALG 371 (501)
T ss_dssp HHHHHHHHHHHTCGGGTHHH---HHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHH
Confidence 34444555554433332333 3334444444444
No 10
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=10.07 E-value=2.8e+02 Score=15.78 Aligned_cols=6 Identities=33% Similarity=0.711 Sum_probs=2.5
Q ss_pred hhhccC
Q psy16475 220 YLRYTQ 225 (299)
Q Consensus 220 ~~r~~~ 225 (299)
++|||+
T Consensus 33 ~~RRRr 38 (44)
T 2l2t_A 33 YVRRKS 38 (44)
T ss_dssp HHHTTC
T ss_pred Hhhhhh
Confidence 344443
Done!