Query psy16475
Match_columns 299
No_of_seqs 179 out of 2008
Neff 9.5
Searched_HMMs 13730
Date Fri Aug 16 22:16:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16475.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/16475hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3dtub2 f.17.2.1 (B:30-129) Ba 12.5 1.6E+02 0.012 18.2 8.2 19 215-233 48-66 (100)
2 d1fftb2 f.17.2.1 (B:27-117) Cy 10.1 1.2E+02 0.0087 18.6 3.2 17 209-225 31-47 (91)
3 d3ehbb2 f.17.2.1 (B:1-107) Bac 9.2 2.2E+02 0.016 17.8 7.7 19 215-233 54-72 (107)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 6.8 4.2E+02 0.03 20.0 6.3 10 281-290 435-444 (447)
5 d1r5aa2 c.47.1.5 (A:2-86) Clas 5.1 1.2E+02 0.0087 18.0 1.2 16 162-177 40-55 (85)
6 d1aw9a2 c.47.1.5 (A:2-82) Clas 5.0 1.4E+02 0.01 17.4 1.5 16 162-177 41-56 (81)
7 d1gnwa2 c.47.1.5 (A:2-85) Clas 4.8 1.4E+02 0.011 17.5 1.5 15 163-177 41-55 (84)
8 d1f2ea2 c.47.1.5 (A:1-80) Clas 4.4 97 0.007 18.2 0.4 16 162-177 39-54 (80)
9 d1nhya2 c.47.1.5 (A:1-75) GST- 4.2 1.1E+02 0.0081 17.9 0.6 15 163-177 37-51 (75)
10 d1k0ma2 c.47.1.5 (A:6-91) Chlo 4.1 1.2E+02 0.0087 18.2 0.7 15 163-177 47-61 (86)
No 1
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=12.45 E-value=1.6e+02 Score=18.19 Aligned_cols=19 Identities=0% Similarity=0.065 Sum_probs=8.1
Q ss_pred HHHHHhhhccCCCCCCCcc
Q psy16475 215 VCGILYLRYTQPDMHRPIK 233 (299)
Q Consensus 215 ~~~~~~~r~~~~~~~~~~~ 233 (299)
.....++|+++.+.++++.
T Consensus 48 ~~~~~~~r~~~~~~~~~~~ 66 (100)
T d3dtub2 48 LYAVWRFHEKRNKVPARFT 66 (100)
T ss_dssp HHHHHHHBTTTCCSCCCCC
T ss_pred HHHhhhhhccCCCCCcccc
Confidence 3334455554433333343
No 2
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=10.14 E-value=1.2e+02 Score=18.57 Aligned_cols=17 Identities=18% Similarity=0.114 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHhhhccC
Q psy16475 209 AFIMISVCGILYLRYTQ 225 (299)
Q Consensus 209 ~~~~~~~~~~~~~r~~~ 225 (299)
....+.....+++|+++
T Consensus 31 ~V~~~~~~~~~ryR~~~ 47 (91)
T d1fftb2 31 PAILMAVGFAWKYRASN 47 (91)
T ss_dssp HHHHHHHTTTTTTTTST
T ss_pred HHHHHHHhhheeeeccC
Confidence 33334444566777664
No 3
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=9.22 E-value=2.2e+02 Score=17.77 Aligned_cols=19 Identities=5% Similarity=0.025 Sum_probs=8.3
Q ss_pred HHHHHhhhccCCCCCCCcc
Q psy16475 215 VCGILYLRYTQPDMHRPIK 233 (299)
Q Consensus 215 ~~~~~~~r~~~~~~~~~~~ 233 (299)
....+++|+++.+.++.+.
T Consensus 54 ~~~~~~~r~~~~~~~~~~~ 72 (107)
T d3ehbb2 54 LICIVRFNRRANPVPARFT 72 (107)
T ss_dssp HHHHHHSBTTTSSSCCCCC
T ss_pred HHHhhhhhccCCccccccc
Confidence 3334455555433333444
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=6.77 E-value=4.2e+02 Score=19.99 Aligned_cols=10 Identities=10% Similarity=0.132 Sum_probs=3.9
Q ss_pred ecCCchhhhh
Q psy16475 281 WRDKPEAFTR 290 (299)
Q Consensus 281 ~~~~~~~~~~ 290 (299)
++++++..++
T Consensus 435 ~~r~~~~~~e 444 (447)
T d1pw4a_ 435 KRRHEQLLQE 444 (447)
T ss_dssp HHHHHGGGGG
T ss_pred cccHHHHHHh
Confidence 3334433333
No 5
>d1r5aa2 c.47.1.5 (A:2-86) Class delta GST {Mosquito (Anopheles dirus b), isozyme 1-5 [TaxId: 123217]}
Probab=5.07 E-value=1.2e+02 Score=18.04 Aligned_cols=16 Identities=19% Similarity=0.285 Sum_probs=12.0
Q ss_pred cchhhhhcCCCCCCch
Q psy16475 162 FPAMLSHINISRFTPT 177 (299)
Q Consensus 162 lP~~~~~~~~~~~~P~ 177 (299)
.+..+.++||..++|.
T Consensus 40 ~~~~~~~~nP~g~vP~ 55 (85)
T d1r5aa2 40 LKPDFVELNPQHCIPT 55 (85)
T ss_dssp GSHHHHTTCTTCCSSE
T ss_pred CCHHHHHHHhcCCCCE
Confidence 4456778898888885
No 6
>d1aw9a2 c.47.1.5 (A:2-82) Class phi GST {Maize (Zea mays), type III [TaxId: 4577]}
Probab=4.96 E-value=1.4e+02 Score=17.42 Aligned_cols=16 Identities=13% Similarity=-0.037 Sum_probs=11.4
Q ss_pred cchhhhhcCCCCCCch
Q psy16475 162 FPAMLSHINISRFTPT 177 (299)
Q Consensus 162 lP~~~~~~~~~~~~P~ 177 (299)
.+..+.++||..++|+
T Consensus 41 ~~~~~~~~nP~g~vP~ 56 (81)
T d1aw9a2 41 KQPDFLALNPFGQIPA 56 (81)
T ss_dssp CCCSGGGTCTTCCSCE
T ss_pred hhHHHHHHhhcCeeEE
Confidence 3456677888888885
No 7
>d1gnwa2 c.47.1.5 (A:2-85) Class phi GST {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=4.78 E-value=1.4e+02 Score=17.54 Aligned_cols=15 Identities=13% Similarity=-0.057 Sum_probs=10.6
Q ss_pred chhhhhcCCCCCCch
Q psy16475 163 PAMLSHINISRFTPT 177 (299)
Q Consensus 163 P~~~~~~~~~~~~P~ 177 (299)
+..+.++||..++|+
T Consensus 41 ~~~~~~~nP~g~vP~ 55 (84)
T d1gnwa2 41 KEPFLSRNPFGQVPA 55 (84)
T ss_dssp STTGGGTCTTCCSCE
T ss_pred HHHHHHHhhcCcceE
Confidence 345667788888885
No 8
>d1f2ea2 c.47.1.5 (A:1-80) Class beta GST {Sphingomonas paucimobilis [TaxId: 13689]}
Probab=4.44 E-value=97 Score=18.23 Aligned_cols=16 Identities=19% Similarity=0.067 Sum_probs=11.6
Q ss_pred cchhhhhcCCCCCCch
Q psy16475 162 FPAMLSHINISRFTPT 177 (299)
Q Consensus 162 lP~~~~~~~~~~~~P~ 177 (299)
.+..+.++||..++|+
T Consensus 39 ~~~~~~~~nP~g~vP~ 54 (80)
T d1f2ea2 39 AGEDFLTVNPSGKVPA 54 (80)
T ss_dssp TSCBHHHHCTTCCSCE
T ss_pred CCHHHHHHhhccccce
Confidence 3456777888888885
No 9
>d1nhya2 c.47.1.5 (A:1-75) GST-like domain of elongation factor 1-gamma {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.25 E-value=1.1e+02 Score=17.86 Aligned_cols=15 Identities=7% Similarity=-0.020 Sum_probs=0.0
Q ss_pred chhhhhcCCCCCCch
Q psy16475 163 PAMLSHINISRFTPT 177 (299)
Q Consensus 163 P~~~~~~~~~~~~P~ 177 (299)
+..|.++||..++|.
T Consensus 37 ~~~~~~~nP~gkVP~ 51 (75)
T d1nhya2 37 AEQFARDFPLKKVPA 51 (75)
T ss_dssp HHHHHHHCTTCCSSE
T ss_pred CHHHHHhCcCCCCCe
No 10
>d1k0ma2 c.47.1.5 (A:6-91) Chloride intracellular channel 1 (clic1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.13 E-value=1.2e+02 Score=18.20 Aligned_cols=15 Identities=7% Similarity=0.005 Sum_probs=0.0
Q ss_pred chhhhhcCCCCCCch
Q psy16475 163 PAMLSHINISRFTPT 177 (299)
Q Consensus 163 P~~~~~~~~~~~~P~ 177 (299)
|..|.++||..++|+
T Consensus 47 ~~~~~~~nP~~~vPv 61 (86)
T d1k0ma2 47 TETVQKLCPGGELPF 61 (86)
T ss_dssp CHHHHHHCTTCCSSE
T ss_pred cHHHHHHhccCceeE
Done!