RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16475
(299 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 61.6 bits (149), Expect = 9e-11
Identities = 74/395 (18%), Positives = 122/395 (30%), Gaps = 134/395 (33%)
Query: 2 CFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILS----LFMLF----TSDVFL--LI-- 49
++ AR +++ + + S +F + L +F +D + L
Sbjct: 125 NYITAR------IMAKRPFDK--KSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDL 176
Query: 50 --TYSSFVESAFIMISVCGILYLRYTQPDMH----RPIKVSLW---------------VP 88
TY V I S + L T D + + + W +P
Sbjct: 177 YQTYHVLVG-DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIP 235
Query: 89 ISFVLICV-----FLVVTPILE-APREVGMAVLITLSGVPVYLI-------GVKWRDKPE 135
IS LI V ++V +L P E+ + L +G L+ W E
Sbjct: 236 ISCPLIGVIQLAHYVVTAKLLGFTPGEL-RSYLKGATGHSQGLVTAVAIAETDSW----E 290
Query: 136 AFTRSF-NALTY-FVQKLMCFVGAR----YGHF---PAMLSH-INISRFTPTPSLVFLNI 185
+F S A+T F F+G R Y + P++L + + P+P +
Sbjct: 291 SFFVSVRKAITVLF------FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP------M 338
Query: 186 LSLFMLFTSDVFLLITY--SSFVESAFIMIS---------VCG--------ILYLR---- 222
LS+ L V + S + IS V G L LR
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA 398
Query: 223 YTQPDMHRPIKVSLWVPIS-----FVLICVFLVVT-----PILEAPREVGMAVL----IT 268
+ D R +P S F FL V +L ++ L ++
Sbjct: 399 PSGLDQSR-------IPFSERKLKFSN--RFLPVASPFHSHLLVPASDLINKDLVKNNVS 449
Query: 269 LSG----VPVYLI--GVKWRDKPEAFTRSFSKFII 297
+ +PVY G R + + II
Sbjct: 450 FNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCII 484
Score = 35.4 bits (81), Expect = 0.024
Identities = 26/135 (19%), Positives = 40/135 (29%), Gaps = 45/135 (33%)
Query: 109 EVGMAVLITLSGVPVYLIGVKWRDKPEAFTRSFN-ALTYFVQKLMCFVGARYGHFPAMLS 167
E GM G+ +Y +A +N A +F YG S
Sbjct: 1628 EQGM-------GMDLY-------KTSKAAQDVWNRADNHFKDT--------YG-----FS 1660
Query: 168 HINISRFTPTPSLVFLN-------ILSLFMLFTSDVFL---LITYSSFVESAFIMISVC- 216
++I P +L I + + + L T F E S
Sbjct: 1661 ILDIVINNPV-NLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTF 1719
Query: 217 ----GILYL-RYTQP 226
G+L ++TQP
Sbjct: 1720 RSEKGLLSATQFTQP 1734
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound,
amino-acid transport, cell inner membrane, cell
membrane, membrane; HET: ARG BNG; 3.00A {Escherichia
coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A
3ncy_A
Length = 445
Score = 52.0 bits (125), Expect = 8e-08
Identities = 26/138 (18%), Positives = 46/138 (33%), Gaps = 13/138 (9%)
Query: 154 FVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFTSDVF-------LLITYSSFV 206
A G FP + + +N TP L+ + IL +S L+ + S
Sbjct: 302 KAAADDGLFPPIFARVN-KAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIF 360
Query: 207 ESAFIMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVL 266
+ + +L L + RP L V L C++ VV + V + +
Sbjct: 361 TLVPYLYTCAALLLLGHGHFGKARPA--YLAVTTIAFLYCIWAVVGSGAKE---VMWSFV 415
Query: 267 ITLSGVPVYLIGVKWRDK 284
+ +Y + K
Sbjct: 416 TLMVITAMYALNYNRLHK 433
Score = 47.7 bits (114), Expect = 2e-06
Identities = 25/138 (18%), Positives = 45/138 (32%), Gaps = 13/138 (9%)
Query: 3 FVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVF-------LLITYSSFV 55
A FP + + +N TP L+ + IL +S L+ + S
Sbjct: 302 KAAADDGLFPPIFARVN-KAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIF 360
Query: 56 ESAFIMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVL 115
+ + +L L + RP L V L C++ VV + V + +
Sbjct: 361 TLVPYLYTCAALLLLGHGHFGKARPA--YLAVTTIAFLYCIWAVVGSGAKE---VMWSFV 415
Query: 116 ITLSGVPVYLIGVKWRDK 133
+ +Y + K
Sbjct: 416 TLMVITAMYALNYNRLHK 433
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell
membrane, membrane, transmembrane, transport protein;
HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB:
3gi9_C* 3gi8_C
Length = 444
Score = 42.3 bits (100), Expect = 1e-04
Identities = 18/127 (14%), Positives = 42/127 (33%), Gaps = 8/127 (6%)
Query: 152 MCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVE-SAF 210
+ + A+ G P F T L + L + ++ + + +S V +
Sbjct: 298 VAYSLAKDGELPEFFERKV--WFKSTEGLYITSALGVLFALLFNMEGVASITSAVFMVIY 355
Query: 211 IMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLS 270
+ + + L + S ++ + V + + R V ++ T
Sbjct: 356 LFVIL-SHYILIDEVGGRKEIVIFS-FIVVLGVFLLLLYY---QWITNRFVFYGIIATFI 410
Query: 271 GVPVYLI 277
GV ++ I
Sbjct: 411 GVLIFEI 417
Score = 38.4 bits (90), Expect = 0.002
Identities = 17/127 (13%), Positives = 41/127 (32%), Gaps = 8/127 (6%)
Query: 1 MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVE-SAF 59
+ + A+ P F T L + L + ++ + + +S V +
Sbjct: 298 VAYSLAKDGELPEFFERKV--WFKSTEGLYITSALGVLFALLFNMEGVASITSAVFMVIY 355
Query: 60 IMISVCGILYLRYTQPDMHRPIKVSLWVPISFVLICVFLVVTPILEAPREVGMAVLITLS 119
+ + + L + S ++ + V + + R V ++ T
Sbjct: 356 LFVIL-SHYILIDEVGGRKEIVIFS-FIVVLGVFLLLLYY---QWITNRFVFYGIIATFI 410
Query: 120 GVPVYLI 126
GV ++ I
Sbjct: 411 GVLIFEI 417
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT,
glutamate-GABA antiporter, transport protein; 3.10A
{Escherichia coli} PDB: 4dji_A
Length = 511
Score = 36.4 bits (84), Expect = 0.011
Identities = 22/146 (15%), Positives = 47/146 (32%), Gaps = 22/146 (15%)
Query: 152 MCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVE---- 207
+V A+ PA + +N P ++ +++ L SF+
Sbjct: 315 GMYVTAQKNLLPAAFAKMN-KNGVPVTLVISQLVITSIALIILTNTGGGNNMSFLIALAL 373
Query: 208 ------SAFIMISVCGILYLRYTQPDMHRPIK----------VSLWVPISFVLICVFLVV 251
A+ M+ + G + L PD+ R V++ ++ ++ + +
Sbjct: 374 TVVIYLCAYFMLFI-GYIVLVLKHPDLKRTFNIPGGKGVKLVVAIVGLLTSIMAFIVSFL 432
Query: 252 TPILEAPREVGMAVLITLSGVPVYLI 277
P M V + + V L
Sbjct: 433 PPDNIQGDSTDMYVELLVVSFLVVLA 458
Score = 32.5 bits (74), Expect = 0.15
Identities = 21/146 (14%), Positives = 47/146 (32%), Gaps = 22/146 (15%)
Query: 1 MCFVGARYDHFPVMLSHINLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVE---- 56
+V A+ + P + +N P ++ +++ L SF+
Sbjct: 315 GMYVTAQKNLLPAAFAKMN-KNGVPVTLVISQLVITSIALIILTNTGGGNNMSFLIALAL 373
Query: 57 ------SAFIMISVCGILYLRYTQPDMHRPIK----------VSLWVPISFVLICVFLVV 100
A+ M+ + G + L PD+ R V++ ++ ++ + +
Sbjct: 374 TVVIYLCAYFMLFI-GYIVLVLKHPDLKRTFNIPGGKGVKLVVAIVGLLTSIMAFIVSFL 432
Query: 101 TPILEAPREVGMAVLITLSGVPVYLI 126
P M V + + V L
Sbjct: 433 PPDNIQGDSTDMYVELLVVSFLVVLA 458
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 35.2 bits (80), Expect = 0.023
Identities = 37/291 (12%), Positives = 71/291 (24%), Gaps = 86/291 (29%)
Query: 18 INLSRFTPTPSLVFLNILSLFMLFTSDVFLLITYSSFVESAFIMISVCGILYLRYTQPDM 77
+NL +P V + L + ++S + + + + +
Sbjct: 187 LNLKNCN-SPETVLEMLQKLLYQIDPN------WTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 78 HRPIKVSL---------WVPISFVLICVFLVVTPILEAPREVGMA-VLITLSGVPVYLIG 127
+P + L +F L C L+ T R + L + + L
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT------RFKQVTDFLSAATTTHISLD- 292
Query: 128 VKWRDKPEAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISRFTPTPSLVFLNILS 187
T + ++ ++ R P + N P LS
Sbjct: 293 ----HHSMTLTPD-EVKSLLLK----YLDCRPQDLPREVLTTN-------P-RR----LS 331
Query: 188 LFMLFTSDVFLLITYSSFVESAFIMISVCGILYLRYTQPDMHRPIKVSLWV--PIS---- 241
+ D + + I+ SL V P
Sbjct: 332 IIAESIRDGLATWDN-----------------WKHVNCDKLTTIIESSLNVLEPAEYRKM 374
Query: 242 FVLICVFLVVTPILEAPREVGMAVLITLSGVPVYLIGVKWRDKPEAFTRSF 292
F + VF P +P L+ + W D ++
Sbjct: 375 FDRLSVF---------PPSAH---------IPTILLSLIWFDVIKSDVMVV 407
Score = 27.9 bits (61), Expect = 5.0
Identities = 24/171 (14%), Positives = 44/171 (25%), Gaps = 56/171 (32%)
Query: 4 VGARYDHFPVMLSHINLSRFTPTPSL-VFLNILSLFMLFTSDVFLL----ITYSSFVESA 58
A H L H +++ TP + L L L +T +
Sbjct: 282 SAATTTHIS--LDHHSMT-LTPDEVKSLLLKYLDC------RPQDLPREVLTTNPRR--- 329
Query: 59 FIMISVCGIL----------YLRYTQPDMHRPIKVSLWV--PIS----FVLICVFLVVTP 102
+S+ + + I+ SL V P F + VF
Sbjct: 330 ---LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF----- 381
Query: 103 ILEAPREVGMAVLITLSGVPVYLIGVKWRDKPEAFTRSFNALTYFVQKLMC 153
P +P L+ + W D ++ + + +
Sbjct: 382 ----PPSAH---------IPTILLSLIWFDVIKSDVMVV--VNKLHKYSLV 417
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.334 0.146 0.455
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,538,049
Number of extensions: 267280
Number of successful extensions: 936
Number of sequences better than 10.0: 1
Number of HSP's gapped: 920
Number of HSP's successfully gapped: 28
Length of query: 299
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 206
Effective length of database: 4,105,140
Effective search space: 845658840
Effective search space used: 845658840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 57 (26.0 bits)