RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16475
         (299 letters)



>d2j0pa1 e.62.1.1 (A:4-341) Hemin transport protein HemS {Yersinia
           enterocolitica [TaxId: 630]}
          Length = 338

 Score = 26.3 bits (58), Expect = 4.6
 Identities = 7/29 (24%), Positives = 13/29 (44%)

Query: 130 WRDKPEAFTRSFNALTYFVQKLMCFVGAR 158
           ++    + T+  N       ++M FVG R
Sbjct: 219 YQVDNSSLTQLLNIAQQEQNEIMIFVGNR 247


>d1sfra_ c.69.1.3 (A:) Antigen 85a {Mycobacterium tuberculosis
           [TaxId: 1773]}
          Length = 288

 Score = 25.7 bits (55), Expect = 7.4
 Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 13/118 (11%)

Query: 69  YLRYTQPDMHRPIKVSLW-----VPISFVL--------ICVFLVVTPILEAPREVGMAVL 115
           YL+   P M R IKV         P  ++L           + + TP  E   + G++V+
Sbjct: 11  YLQVPSPSMGRDIKVQFQSGGANSPALYLLDGLRAQDDFSGWDINTPAFEWYDQSGLSVV 70

Query: 116 ITLSGVPVYLIGVKWRDKPEAFTRSFNALTYFVQKLMCFVGARYGHFPAMLSHINISR 173
           + + G   +          +A  +++   T+   +L  ++ A     P   + + +S 
Sbjct: 71  MPVGGQSSFYSDWYQPACGKAGCQTYKWETFLTSELPGWLQANRHVKPTGSAVVGLSM 128


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.334    0.146    0.455 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,110,375
Number of extensions: 50730
Number of successful extensions: 208
Number of sequences better than 10.0: 1
Number of HSP's gapped: 208
Number of HSP's successfully gapped: 21
Length of query: 299
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 214
Effective length of database: 1,240,546
Effective search space: 265476844
Effective search space used: 265476844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 53 (24.3 bits)