BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16477
(172 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O16797|RL3_DROME 60S ribosomal protein L3 OS=Drosophila melanogaster GN=RpL3 PE=2
SV=3
Length = 416
Score = 111 bits (277), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 47/68 (69%), Positives = 59/68 (86%)
Query: 45 AHMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKG 104
+ ++L+K+RQKKAH+MEIQLNGGS+ DK+ WAR+HLE+PI V VF QDEMIDC+GVTKG
Sbjct: 166 SQIRLIKQRQKKAHVMEIQLNGGSIEDKVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKG 225
Query: 105 KGFKGFVN 112
KGFKG +
Sbjct: 226 KGFKGVTS 233
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/30 (83%), Positives = 28/30 (93%)
Query: 127 SAKFGHGRFQTPADKLAFMGYLKKDRIREE 156
S+K GHGRFQTPADKLAFMG LKKDR++EE
Sbjct: 371 SSKMGHGRFQTPADKLAFMGPLKKDRLKEE 400
>sp|P49149|RL3_TOXCA 60S ribosomal protein L3 OS=Toxocara canis GN=RPL3 PE=2 SV=2
Length = 402
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 50/77 (64%), Positives = 64/77 (83%), Gaps = 6/77 (7%)
Query: 36 LAHTEDLYGAHMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEM 95
+AHT+ MK++K R+KKAH+MEIQ+NGG+VA+K+ WAR+HLE+ +PV VFAQDEM
Sbjct: 163 IAHTQ------MKVMKHREKKAHIMEIQINGGTVAEKVDWAREHLEKQVPVDSVFAQDEM 216
Query: 96 IDCIGVTKGKGFKGFVN 112
IDCIGVTKGKGFKG +
Sbjct: 217 IDCIGVTKGKGFKGVTS 233
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/31 (74%), Positives = 25/31 (80%)
Query: 127 SAKFGHGRFQTPADKLAFMGYLKKDRIREEE 157
S+KFGHGRFQT A+K AFMG LKKD I E E
Sbjct: 368 SSKFGHGRFQTHAEKRAFMGKLKKDLIAESE 398
>sp|Q4R5Q0|RL3_MACFA 60S ribosomal protein L3 OS=Macaca fascicularis GN=RPL3 PE=2 SV=3
Length = 403
Score = 106 bits (265), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 51/86 (59%), Positives = 65/86 (75%), Gaps = 6/86 (6%)
Query: 27 RQHITVCLKLAHTEDLYGAHMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPV 86
+++ V +AHT+ M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV
Sbjct: 154 KKYCQVIRVIAHTQ------MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPV 207
Query: 87 GQVFAQDEMIDCIGVTKGKGFKGFVN 112
QVF QDEMID IGVTKGKG+KG +
Sbjct: 208 NQVFGQDEMIDVIGVTKGKGYKGVTS 233
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 26/31 (83%)
Query: 127 SAKFGHGRFQTPADKLAFMGYLKKDRIREEE 157
++KFGHGRFQT +K AFMG LKKDRI +EE
Sbjct: 371 TSKFGHGRFQTMEEKKAFMGPLKKDRIAKEE 401
>sp|P39023|RL3_HUMAN 60S ribosomal protein L3 OS=Homo sapiens GN=RPL3 PE=1 SV=2
Length = 403
Score = 106 bits (264), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 51/86 (59%), Positives = 65/86 (75%), Gaps = 6/86 (6%)
Query: 27 RQHITVCLKLAHTEDLYGAHMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPV 86
+++ V +AHT+ M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV
Sbjct: 154 KKYCQVIRVIAHTQ------MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPV 207
Query: 87 GQVFAQDEMIDCIGVTKGKGFKGFVN 112
QVF QDEMID IGVTKGKG+KG +
Sbjct: 208 NQVFGQDEMIDVIGVTKGKGYKGVTS 233
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 26/31 (83%)
Query: 127 SAKFGHGRFQTPADKLAFMGYLKKDRIREEE 157
++KFGHGRFQT +K AFMG LKKDRI +EE
Sbjct: 371 TSKFGHGRFQTMEEKKAFMGPLKKDRIAKEE 401
>sp|P27659|RL3_MOUSE 60S ribosomal protein L3 OS=Mus musculus GN=Rpl3 PE=2 SV=3
Length = 403
Score = 106 bits (264), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 51/86 (59%), Positives = 65/86 (75%), Gaps = 6/86 (6%)
Query: 27 RQHITVCLKLAHTEDLYGAHMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPV 86
+++ V +AHT+ M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV
Sbjct: 154 KKYCQVIRIIAHTQ------MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPV 207
Query: 87 GQVFAQDEMIDCIGVTKGKGFKGFVN 112
QVF QDEMID IGVTKGKG+KG +
Sbjct: 208 NQVFGQDEMIDVIGVTKGKGYKGVTS 233
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 26/31 (83%)
Query: 127 SAKFGHGRFQTPADKLAFMGYLKKDRIREEE 157
++KFGHGRFQT +K AFMG LKKDRI +EE
Sbjct: 371 TSKFGHGRFQTMEEKKAFMGPLKKDRIAKEE 401
>sp|P21531|RL3_RAT 60S ribosomal protein L3 OS=Rattus norvegicus GN=Rpl3 PE=1 SV=3
Length = 403
Score = 106 bits (264), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 51/86 (59%), Positives = 65/86 (75%), Gaps = 6/86 (6%)
Query: 27 RQHITVCLKLAHTEDLYGAHMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPV 86
+++ V +AHT+ M+LL RQKKAHLMEIQ+NGG+VA+K+ WAR+ LEQ +PV
Sbjct: 154 KKYCQVIRIIAHTQ------MRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPV 207
Query: 87 GQVFAQDEMIDCIGVTKGKGFKGFVN 112
QVF QDEMID IGVTKGKG+KG +
Sbjct: 208 NQVFGQDEMIDVIGVTKGKGYKGVTS 233
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 26/31 (83%)
Query: 127 SAKFGHGRFQTPADKLAFMGYLKKDRIREEE 157
++KFGHGRFQT +K AFMG LKKDRI +EE
Sbjct: 371 TSKFGHGRFQTMEEKKAFMGPLKKDRIAKEE 401
>sp|P39872|RL3_BOVIN 60S ribosomal protein L3 OS=Bos taurus GN=RPL3 PE=2 SV=2
Length = 403
Score = 105 bits (263), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/86 (58%), Positives = 65/86 (75%), Gaps = 6/86 (6%)
Query: 27 RQHITVCLKLAHTEDLYGAHMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPV 86
+++ V +AHT+ M+LL RQKKAHLME+Q+NGG+VA+K+ WAR+ LEQ +PV
Sbjct: 154 KKYCQVIRVIAHTQ------MRLLPLRQKKAHLMEVQVNGGTVAEKLDWARERLEQQVPV 207
Query: 87 GQVFAQDEMIDCIGVTKGKGFKGFVN 112
QVF QDEMID IGVTKGKG+KG +
Sbjct: 208 SQVFGQDEMIDVIGVTKGKGYKGVTS 233
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 26/31 (83%)
Query: 127 SAKFGHGRFQTPADKLAFMGYLKKDRIREEE 157
++KFGHGRFQT +K AFMG LKKDRI +EE
Sbjct: 371 TSKFGHGRFQTVEEKKAFMGPLKKDRIAKEE 401
>sp|Q9NBK4|RL3_CAEBR 60S ribosomal protein L3 OS=Caenorhabditis briggsae GN=rpl-3 PE=3
SV=2
Length = 401
Score = 99.8 bits (247), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 46/77 (59%), Positives = 60/77 (77%), Gaps = 6/77 (7%)
Query: 36 LAHTEDLYGAHMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEM 95
+AHT+ MK+L++RQKKAHL+EIQ+NGG++ K+ WAR+HLE+ I V VF+QDEM
Sbjct: 163 IAHTQ------MKILRRRQKKAHLVEIQINGGTIEQKVDWAREHLEKQIQVDTVFSQDEM 216
Query: 96 IDCIGVTKGKGFKGFVN 112
ID IGVTKG GFKG +
Sbjct: 217 IDTIGVTKGHGFKGVTS 233
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 26/34 (76%)
Query: 127 SAKFGHGRFQTPADKLAFMGYLKKDRIREEEKKA 160
S+K GHGRFQT A+K AFMG LK+D + E E KA
Sbjct: 368 SSKTGHGRFQTTAEKRAFMGKLKRDFLAEAENKA 401
>sp|P50880|RL3_CAEEL 60S ribosomal protein L3 OS=Caenorhabditis elegans GN=rpl-3 PE=2
SV=1
Length = 401
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 45/77 (58%), Positives = 60/77 (77%), Gaps = 6/77 (7%)
Query: 36 LAHTEDLYGAHMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEM 95
+AHT+ MK+L++RQKKAHL+EIQ+NGG++ K+ WAR+HLE+ + V VFAQDEM
Sbjct: 163 IAHTQ------MKILRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQVQVDTVFAQDEM 216
Query: 96 IDCIGVTKGKGFKGFVN 112
ID IGVT+G GFKG +
Sbjct: 217 IDTIGVTRGHGFKGVTS 233
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/34 (64%), Positives = 26/34 (76%)
Query: 127 SAKFGHGRFQTPADKLAFMGYLKKDRIREEEKKA 160
S+K GHGRFQT A+K AFMG LK+D + E E KA
Sbjct: 368 SSKTGHGRFQTTAEKRAFMGKLKRDFLAEAEAKA 401
>sp|Q3SZ10|RL3L_BOVIN 60S ribosomal protein L3-like OS=Bos taurus GN=RPL3L PE=2 SV=3
Length = 407
Score = 93.6 bits (231), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 65/95 (68%), Gaps = 6/95 (6%)
Query: 18 QLNGGSVADRQHITVCLKLAHTEDLYGAHMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 77
QL A +++ V + HT+ MKLL RQKKAH+ME+QLNGG+VA+K+AWA+
Sbjct: 145 QLQKDFAAMKKYCKVIRVIVHTQ------MKLLPFRQKKAHIMEVQLNGGTVAEKVAWAQ 198
Query: 78 QHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGFVN 112
LE+ +PV VF+Q+E+ID I VTKG+G KG +
Sbjct: 199 ARLEKQVPVHSVFSQNEIIDVIAVTKGRGIKGVTS 233
Score = 36.6 bits (83), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 6/39 (15%)
Query: 112 NSSLLFRDSKITSIISAKFGHGRFQTPADKLAFMGYLKK 150
N L F D+ ++KFGHGRFQT +K AFMG KK
Sbjct: 362 NIELKFIDT------TSKFGHGRFQTAQEKRAFMGPQKK 394
>sp|Q92901|RL3L_HUMAN 60S ribosomal protein L3-like OS=Homo sapiens GN=RPL3L PE=1 SV=3
Length = 407
Score = 92.8 bits (229), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 64/95 (67%), Gaps = 6/95 (6%)
Query: 18 QLNGGSVADRQHITVCLKLAHTEDLYGAHMKLLKKRQKKAHLMEIQLNGGSVADKIAWAR 77
QL A +++ V + HT+ MKLL RQKKAH+MEIQLNGG+VA+K+AWA+
Sbjct: 145 QLQKDFAAMKKYCKVIRVIVHTQ------MKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQ 198
Query: 78 QHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGFVN 112
LE+ +PV VF+Q E+ID I VTKG+G KG +
Sbjct: 199 ARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTS 233
Score = 36.6 bits (83), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 24/39 (61%), Gaps = 6/39 (15%)
Query: 112 NSSLLFRDSKITSIISAKFGHGRFQTPADKLAFMGYLKK 150
N L F D+ ++KFGHGRFQT +K AFMG KK
Sbjct: 362 NIELKFIDT------TSKFGHGRFQTAQEKRAFMGPQKK 394
>sp|Q8NKF4|RL3_ASPFU 60S ribosomal protein L3 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rpl3 PE=1
SV=2
Length = 392
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 46/98 (46%), Positives = 63/98 (64%), Gaps = 11/98 (11%)
Query: 20 NGGSVAD-----RQHITVCLKLAHTEDLYGAHMKLLKKRQKKAHLMEIQLNGGSVADKIA 74
NG S+ +++ TV LAHT+ ++ +QKKAHLMEIQ+NGGSVADK+
Sbjct: 141 NGASITRELERIKKYCTVVRVLAHTQ------IRKTPLKQKKAHLMEIQVNGGSVADKVD 194
Query: 75 WARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGFVN 112
+AR E+PI + +F +DEMID I VTKG GF+G +
Sbjct: 195 FARNLFEKPIEIDSIFEKDEMIDVIAVTKGHGFQGVTS 232
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 22/27 (81%)
Query: 127 SAKFGHGRFQTPADKLAFMGYLKKDRI 153
S+KFGHG FQTP +K AFMG LKKD +
Sbjct: 363 SSKFGHGAFQTPEEKRAFMGTLKKDLV 389
>sp|P36584|RL3B_SCHPO 60S ribosomal protein L3-B OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rpl3b PE=3 SV=2
Length = 388
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 58/83 (69%), Gaps = 6/83 (7%)
Query: 27 RQHITVCLKLAHTEDLYGAHMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPV 86
+++ +V LAHT+ ++ QKKAHLMEIQ+NGGSVADK+ WAR+H E+ + +
Sbjct: 152 KKYCSVVRVLAHTQ------IRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDI 205
Query: 87 GQVFAQDEMIDCIGVTKGKGFKG 109
F Q+EMID IGVT+GKG +G
Sbjct: 206 KSTFEQNEMIDVIGVTRGKGNEG 228
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 21/25 (84%)
Query: 127 SAKFGHGRFQTPADKLAFMGYLKKD 151
++KFGHGRFQTPA+ F+G LKKD
Sbjct: 362 ASKFGHGRFQTPAEAKQFLGTLKKD 386
>sp|P40372|RL3A_SCHPO 60S ribosomal protein L3-A OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rpl3a PE=1 SV=2
Length = 388
Score = 87.8 bits (216), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 58/83 (69%), Gaps = 6/83 (7%)
Query: 27 RQHITVCLKLAHTEDLYGAHMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPV 86
+++ +V LAHT+ ++ QKKAHLMEIQ+NGGSVADK+ WAR+H E+ + +
Sbjct: 152 KKYCSVVRVLAHTQ------IRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDI 205
Query: 87 GQVFAQDEMIDCIGVTKGKGFKG 109
F Q+EMID IGVT+GKG +G
Sbjct: 206 KSTFEQNEMIDVIGVTRGKGNEG 228
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 21/25 (84%)
Query: 127 SAKFGHGRFQTPADKLAFMGYLKKD 151
++KFGHGRFQTPA+ F+G LKKD
Sbjct: 362 ASKFGHGRFQTPAEAKQFLGTLKKD 386
>sp|Q759R7|RL3_ASHGO 60S ribosomal protein L3 OS=Ashbya gossypii (strain ATCC 10895 /
CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RPL3 PE=3 SV=2
Length = 387
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 58/86 (67%), Gaps = 6/86 (6%)
Query: 27 RQHITVCLKLAHTEDLYGAHMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPV 86
+++ +V LAHT+ ++ QKKAHL EIQLNGGSV++K+ WAR+H E+ + V
Sbjct: 152 KKYASVVRVLAHTQ------VRKTPLVQKKAHLAEIQLNGGSVSEKVDWAREHFEKTVSV 205
Query: 87 GQVFAQDEMIDCIGVTKGKGFKGFVN 112
VF Q+EMID I VTKG GF+G +
Sbjct: 206 DSVFEQNEMIDVIAVTKGHGFEGVTH 231
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/25 (76%), Positives = 22/25 (88%)
Query: 127 SAKFGHGRFQTPADKLAFMGYLKKD 151
++KFG GRFQTPA+K AFMG LKKD
Sbjct: 362 ASKFGKGRFQTPAEKHAFMGTLKKD 386
>sp|P35684|RL3_ORYSJ 60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3
PE=2 SV=2
Length = 389
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/86 (51%), Positives = 61/86 (70%), Gaps = 5/86 (5%)
Query: 27 RQHITVCLKLAHTEDLYGAHMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPV 86
+++ ++ +AHT+ MK LK QKKAHLMEIQ+NGG++ADK+ + + E+ IPV
Sbjct: 154 KKYASIVRVIAHTQI---RKMKGLK--QKKAHLMEIQINGGTIADKVDYGYKFFEKEIPV 208
Query: 87 GQVFAQDEMIDCIGVTKGKGFKGFVN 112
VF +DEMID IGVTKGKG++G V
Sbjct: 209 DAVFQKDEMIDIIGVTKGKGYEGVVT 234
Score = 34.3 bits (77), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 112 NSSLLFRDSKITSI-ISAKFGHGRFQTPADKLAFMGYLK 149
S L + K+ I S+KFGHGRFQT +K F G LK
Sbjct: 350 TSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388
>sp|Q6FTJ2|RL3_CANGA 60S ribosomal protein L3 OS=Candida glabrata (strain ATCC 2001 /
CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RPL3 PE=3
SV=1
Length = 387
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 41/86 (47%), Positives = 57/86 (66%), Gaps = 6/86 (6%)
Query: 27 RQHITVCLKLAHTEDLYGAHMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPV 86
+++ TV L HT+ ++ QKKAHL EIQLNGGS+++K+ WAR+H E+ + V
Sbjct: 152 KKYATVVRVLVHTQ------VRKTPLVQKKAHLAEIQLNGGSISEKVDWAREHFEKTVSV 205
Query: 87 GQVFAQDEMIDCIGVTKGKGFKGFVN 112
VF Q+EMID I VTKG GF+G +
Sbjct: 206 DSVFEQNEMIDAIAVTKGHGFEGVTH 231
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/25 (76%), Positives = 22/25 (88%)
Query: 127 SAKFGHGRFQTPADKLAFMGYLKKD 151
++KFG GRFQTPA+K AFMG LKKD
Sbjct: 362 ASKFGKGRFQTPAEKHAFMGTLKKD 386
>sp|Q6CJR7|RL3_KLULA 60S ribosomal protein L3 OS=Kluyveromyces lactis (strain ATCC 8585
/ CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=RPL3 PE=3 SV=1
Length = 387
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 46/59 (77%)
Query: 54 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGFVN 112
QKKAHL EIQLNGGSV+DK+ WA++H E+ + V VF Q+EMID + VTKG GF+G +
Sbjct: 173 QKKAHLAEIQLNGGSVSDKVDWAKEHFEKTVAVDSVFEQNEMIDVVAVTKGHGFEGVTH 231
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/25 (72%), Positives = 22/25 (88%)
Query: 127 SAKFGHGRFQTPADKLAFMGYLKKD 151
++KFG GRFQTPA+K AF+G LKKD
Sbjct: 362 ASKFGKGRFQTPAEKHAFLGTLKKD 386
>sp|P14126|RL3_YEAST 60S ribosomal protein L3 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPL3 PE=1 SV=4
Length = 387
Score = 84.3 bits (207), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 46/59 (77%)
Query: 54 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGFVN 112
QKKAHL EIQLNGGS+++K+ WAR+H E+ + V VF Q+EMID I VTKG GF+G +
Sbjct: 173 QKKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDSVFEQNEMIDAIAVTKGHGFEGVTH 231
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 19/25 (76%), Positives = 22/25 (88%)
Query: 127 SAKFGHGRFQTPADKLAFMGYLKKD 151
++KFG GRFQTPA+K AFMG LKKD
Sbjct: 362 ASKFGKGRFQTPAEKHAFMGTLKKD 386
>sp|P17094|RL31_ARATH 60S ribosomal protein L3-1 OS=Arabidopsis thaliana GN=ARP1 PE=2
SV=5
Length = 389
Score = 83.6 bits (205), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 45/86 (52%), Positives = 60/86 (69%), Gaps = 5/86 (5%)
Query: 27 RQHITVCLKLAHTEDLYGAHMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPV 86
+++ TV LAHT+ MK LK QKKAH+MEIQ+NGG++A K+ +A E+ IP+
Sbjct: 154 KKYATVIRVLAHTQI---RKMKGLK--QKKAHMMEIQINGGTIAQKVDFAYSFFEKQIPI 208
Query: 87 GQVFAQDEMIDCIGVTKGKGFKGFVN 112
VF +DEMID IGVTKGKG++G V
Sbjct: 209 EAVFQKDEMIDIIGVTKGKGYEGVVT 234
>sp|Q6BXM5|RL3_DEBHA 60S ribosomal protein L3 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=RPL3 PE=3 SV=1
Length = 389
Score = 83.2 bits (204), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 40/86 (46%), Positives = 57/86 (66%), Gaps = 6/86 (6%)
Query: 27 RQHITVCLKLAHTEDLYGAHMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPV 86
+++ +V LAHT+ +K QKKAHL EIQ+NGGSV+DK+ WA++H E+ + V
Sbjct: 152 KKYASVVRVLAHTQ------IKKTPLAQKKAHLAEIQVNGGSVSDKVDWAKEHFEKTVSV 205
Query: 87 GQVFAQDEMIDCIGVTKGKGFKGFVN 112
VF +DEM+D VTKG GF+G +
Sbjct: 206 DSVFEKDEMVDVAAVTKGHGFEGVTH 231
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/25 (72%), Positives = 22/25 (88%)
Query: 127 SAKFGHGRFQTPADKLAFMGYLKKD 151
++KFG GRFQTPA+K AF+G LKKD
Sbjct: 362 ASKFGKGRFQTPAEKHAFLGTLKKD 386
>sp|O96774|RL3_TETTH Ribosomal protein L3 OS=Tetrahymena thermophila GN=RPL3 PE=1 SV=1
Length = 391
Score = 80.5 bits (197), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 59/84 (70%), Gaps = 6/84 (7%)
Query: 28 QHITVCLKLAHTEDLYGAHMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVG 87
++ +V +AHT +M L RQKK H++EIQ+NGG VA+K+A+A+ LE+ + V
Sbjct: 151 KYCSVVRVIAHT------NMSKLNLRQKKNHILEIQVNGGKVAEKVAFAKSLLEKEVKVD 204
Query: 88 QVFAQDEMIDCIGVTKGKGFKGFV 111
+FA++EM+D +GVTKGKGF G +
Sbjct: 205 SIFAENEMLDVLGVTKGKGFAGVI 228
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 127 SAKFGHGRFQTPADKLAFMGYLKKDRIREEEKKA 160
S+K GHGRFQT +K F G +DR ++ E K+
Sbjct: 360 SSKIGHGRFQTVEEKDKFFG---RDRTKKVEAKS 390
>sp|P59671|RL3_NEUCR 60S ribosomal protein L3 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rpl-3
PE=3 SV=1
Length = 392
Score = 79.7 bits (195), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 55/83 (66%), Gaps = 6/83 (7%)
Query: 27 RQHITVCLKLAHTEDLYGAHMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPV 86
+++ TV LAHT+ ++ +QKKAHLMEIQ+NGGSVADK+ + E+P+ +
Sbjct: 153 KKYCTVVRVLAHTQ------IRKTPLKQKKAHLMEIQINGGSVADKVEFGHGLFEKPVSI 206
Query: 87 GQVFAQDEMIDCIGVTKGKGFKG 109
+F +DE+ID I VTKG GF G
Sbjct: 207 DSIFEKDEVIDVIAVTKGHGFTG 229
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 78/215 (36%), Gaps = 71/215 (33%)
Query: 8 RQKKAHLMEIQLNGG--------------------SVADRQHITVCLKLAHTEDLYGAHM 47
+QKKAHLMEIQ+NGG S+ ++ + + + G
Sbjct: 173 KQKKAHLMEIQINGGSVADKVEFGHGLFEKPVSIDSIFEKDEVIDVIAVTKGHGFTGVTA 232
Query: 48 KL-LKKRQKKAH--LMEIQLNGGSVADKIAWA-----------RQHLEQPI-PVGQVFAQ 92
+ KK +K H L ++ G + W R + I +G+ A+
Sbjct: 233 RWGTKKLPRKTHKGLRKVACIGAWHPSHVQWTVARAGQAGYHHRTSVNHKIYRIGKGDAE 292
Query: 93 DEMIDCIGVTKGK-----GF--KGFVNSSLLFRDSKITSI-------------------- 125
D + VTK K GF G +N+ + + +
Sbjct: 293 DSAATEVDVTKKKITPMGGFVRYGEINNDFVMVKGSVPGVKKRVMTLRKSMFVHTSRKAL 352
Query: 126 ---------ISAKFGHGRFQTPADKLAFMGYLKKD 151
S++FGHG FQTPA+K F G LKKD
Sbjct: 353 EKVELKWIDTSSEFGHGAFQTPAEKKQFQGTLKKD 387
>sp|P22738|RL32_ARATH 60S ribosomal protein L3-2 OS=Arabidopsis thaliana GN=ARP2 PE=2
SV=4
Length = 390
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 58/86 (67%), Gaps = 5/86 (5%)
Query: 27 RQHITVCLKLAHTEDLYGAHMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPV 86
+++ +V LAHT+ MK LK QKKAHL EIQ+NGG +A K+ +A E+ +PV
Sbjct: 154 KKYCSVIRVLAHTQI---RKMKGLK--QKKAHLNEIQINGGDIAKKVDYACSLFEKQVPV 208
Query: 87 GQVFAQDEMIDCIGVTKGKGFKGFVN 112
+F +DEMID IGVTKGKG++G V
Sbjct: 209 DAIFQKDEMIDIIGVTKGKGYEGVVT 234
>sp|Q8SQI3|RL3_ENCCU 60S ribosomal protein L3 OS=Encephalitozoon cuniculi (strain GB-M1)
GN=RPL3-1 PE=1 SV=1
Length = 383
Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 34/57 (59%), Positives = 45/57 (78%)
Query: 55 KKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGFV 111
KKAH+ EIQ+NGGS+++K+ WA LE+ I +G+VF +E ID IGVTKGKGF+G V
Sbjct: 170 KKAHIAEIQVNGGSISEKVEWALGRLEKEIAIGEVFGVNENIDTIGVTKGKGFQGTV 226
Score = 35.0 bits (79), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 127 SAKFGHGRFQTPADKLAFMGYLKKD 151
S+K GHGRFQT A+K AF G K D
Sbjct: 353 SSKIGHGRFQTSAEKKAFYGARKAD 377
>sp|P34113|RL3_DICDI 60S ribosomal protein L3 OS=Dictyostelium discoideum GN=rpl3 PE=1
SV=2
Length = 398
Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/87 (44%), Positives = 59/87 (67%), Gaps = 6/87 (6%)
Query: 25 ADRQHITVCLKLAHTEDLYGAHMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPI 84
A ++ +V +AHT+ + LK QKKAH++EIQ+NGGS+ +K+ +A + E+ +
Sbjct: 153 AIKKRCSVVRVIAHTQ------VHKLKLTQKKAHVLEIQVNGGSIVEKVNFAVANFEKTV 206
Query: 85 PVGQVFAQDEMIDCIGVTKGKGFKGFV 111
V VFA++E+ID IGVTKGKGF G +
Sbjct: 207 NVTGVFAENELIDVIGVTKGKGFNGVI 233
>sp|Q4JB40|RL3_SULAC 50S ribosomal protein L3P OS=Sulfolobus acidocaldarius (strain ATCC
33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770)
GN=rpl3p PE=3 SV=1
Length = 342
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 40/58 (68%)
Query: 54 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGFV 111
+K+ ++EIQ+ GGS+ D++ + L + IPV VF + ++ D IGVTKGKGF+G +
Sbjct: 164 KKRPEIVEIQIGGGSIQDQLNYGLSLLGKQIPVRDVFREGQLTDIIGVTKGKGFQGVI 221
>sp|A4FVY2|RL3_METM5 50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C5 /
ATCC BAA-1333) GN=rpl3p PE=3 SV=1
Length = 334
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 43/58 (74%)
Query: 54 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGFV 111
+KK ++EI++ G SVA+++A+A++ L + + +G VF E+ID + +TKGKGF+G V
Sbjct: 153 KKKPEVVEIRIGGSSVAERLAYAKEILGKTLAIGDVFEAGEIIDTLAITKGKGFQGSV 210
>sp|A3DNA4|RL3_STAMF 50S ribosomal protein L3P OS=Staphylothermus marinus (strain ATCC
43588 / DSM 3639 / F1) GN=rpl3p PE=3 SV=1
Length = 395
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 42/58 (72%)
Query: 54 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGFV 111
+KK ++EI++ GG+++++I +A + L + V QVF + + ID IGVTKGKGF+G +
Sbjct: 215 KKKPEIIEIKIGGGTLSERIDYAEKLLGNYVTVDQVFREGQFIDIIGVTKGKGFQGVI 272
>sp|Q975I1|RL3_SULTO 50S ribosomal protein L3P OS=Sulfolobus tokodaii (strain DSM 16993
/ JCM 10545 / NBRC 100140 / 7) GN=rpl3p PE=3 SV=1
Length = 343
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 39/58 (67%)
Query: 54 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGFV 111
+KK ++E+Q+ GG + ++ + L +P+ V VF + ++ID IGVTKGKGF+G V
Sbjct: 165 KKKPEIVEVQVGGGDIKSQLNYVLNILGKPLSVKDVFKEGQLIDIIGVTKGKGFQGVV 222
>sp|Q6LX10|RL3_METMP 50S ribosomal protein L3P OS=Methanococcus maripaludis (strain S2 /
LL) GN=rpl3p PE=3 SV=1
Length = 334
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 42/58 (72%)
Query: 54 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGFV 111
+KK ++EI++ G SVA+++A+A++ L + + + VF E+ID + +TKGKGF+G V
Sbjct: 153 KKKPEVVEIRIGGSSVAERLAYAKEILGKTLAISDVFEAGEIIDTLAITKGKGFQGSV 210
>sp|A6VHD2|RL3_METM7 50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C7 /
ATCC BAA-1331) GN=rpl3p PE=3 SV=1
Length = 334
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 42/58 (72%)
Query: 54 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGFV 111
+KK ++EI++ G SVA+++A+A++ L + + + VF E+ID + +TKGKGF+G V
Sbjct: 153 KKKPEVVEIRIGGSSVAERLAYAKEILGKTLAISDVFEAGEIIDTLAITKGKGFQGSV 210
>sp|A9A9B8|RL3_METM6 50S ribosomal protein L3P OS=Methanococcus maripaludis (strain C6 /
ATCC BAA-1332) GN=rpl3p PE=3 SV=1
Length = 334
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 42/58 (72%)
Query: 54 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGFV 111
+KK ++EI++ G SVA+++A+A++ L + + + VF E+ID + +TKGKGF+G V
Sbjct: 153 KKKPEVVEIRIGGSSVAERLAYAKEILGKTLAISDVFEAGEIIDTLAITKGKGFQGSV 210
>sp|A6UQJ0|RL3_METVS 50S ribosomal protein L3P OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=rpl3p PE=3 SV=1
Length = 334
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 40/58 (68%)
Query: 54 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGFV 111
+KK ++EI++ G SVA+K+A+A+ L + + + VF E ID + VTKGKGF+G V
Sbjct: 153 KKKPEVVEIRVGGSSVAEKLAYAKDILGKTLSINDVFETGEFIDTLAVTKGKGFQGPV 210
>sp|Q9UWG2|RL3_METVA 50S ribosomal protein L3P OS=Methanococcus vannielii GN=rpl3p PE=3
SV=1
Length = 334
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 40/58 (68%)
Query: 54 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGFV 111
+KK ++EI++ G SVA+K+A+A+ L + + + VF E ID + VTKGKGF+G V
Sbjct: 153 KKKPEVVEIRVGGSSVAEKLAYAKDILGKTLSINDVFETGEFIDTLAVTKGKGFQGPV 210
>sp|P54014|RL3_METJA 50S ribosomal protein L3P OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=rpl3p PE=3 SV=1
Length = 335
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 47/77 (61%)
Query: 35 KLAHTEDLYGAHMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDE 94
K+ L + KL +KK ++EI++ G + +++ +A++ L + + + VF + E
Sbjct: 135 KIEDVRVLVHTNPKLTCLPKKKPEILEIRIGGKDIEERLNYAKEILGKQLNITDVFQEGE 194
Query: 95 MIDCIGVTKGKGFKGFV 111
++D IGVTKGKGF+G V
Sbjct: 195 LVDTIGVTKGKGFQGQV 211
>sp|A6UV68|RL3_META3 50S ribosomal protein L3P OS=Methanococcus aeolicus (strain
Nankai-3 / ATCC BAA-1280) GN=rpl3p PE=3 SV=1
Length = 333
Score = 50.8 bits (120), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 39/58 (67%)
Query: 54 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGFV 111
+KK ++EI++ G +++D IA+A+ + + + + VF E ID + +TKGKGF+G V
Sbjct: 152 KKKPEIIEIKIGGKNISDIIAYAKDIIGKKLSINDVFTGGEFIDTVAITKGKGFQGPV 209
>sp|Q29293|RL3_PIG 60S ribosomal protein L3 (Fragment) OS=Sus scrofa GN=RPL3 PE=2 SV=1
Length = 130
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/26 (80%), Positives = 23/26 (88%)
Query: 84 IPVGQVFAQDEMIDCIGVTKGKGFKG 109
+PV QVF QDEMID IGVTKGKG+KG
Sbjct: 2 VPVNQVFGQDEMIDVIGVTKGKGYKG 27
>sp|O59418|RL3_PYRHO 50S ribosomal protein L3P OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rpl3p PE=3 SV=1
Length = 362
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%)
Query: 52 KRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGFV 111
K +KK +ME + G SV +K + ++ L + I VG+V + E++D I VTKGKG +G V
Sbjct: 173 KLKKKPEVMEYAIGGTSVEEKFNYIKEKLGKEIRVGEVLKEGELLDVIAVTKGKGTQGPV 232
>sp|Q9UXA8|RL3_SULSO 50S ribosomal protein L3P OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=rpl3p PE=3 SV=1
Length = 351
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 54 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGFV 111
+K L+EIQ+ GG ++ +A L + I + VF + ++ID +GVTKGKGF G +
Sbjct: 173 KKAPDLVEIQIGGGEKKSQLDYALNILGKEITIRDVFKEGQLIDVVGVTKGKGFAGVI 230
>sp|C3NEE3|RL3_SULIY 50S ribosomal protein L3P OS=Sulfolobus islandicus (strain
Y.G.57.14 / Yellowstone #1) GN=rpl3p PE=3 SV=1
Length = 351
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 54 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGFV 111
+K L+EIQ+ GG ++ +A L + I + VF + ++ID +GVTKGKGF G +
Sbjct: 173 KKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVI 230
>sp|C3NHA9|RL3_SULIN 50S ribosomal protein L3P OS=Sulfolobus islandicus (strain
Y.N.15.51 / Yellowstone #2) GN=rpl3p PE=3 SV=1
Length = 351
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 54 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGFV 111
+K L+EIQ+ GG ++ +A L + I + VF + ++ID +GVTKGKGF G +
Sbjct: 173 KKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVI 230
>sp|C3MQ59|RL3_SULIL 50S ribosomal protein L3P OS=Sulfolobus islandicus (strain L.S.2.15
/ Lassen #1) GN=rpl3p PE=3 SV=1
Length = 351
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 54 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGFV 111
+K L+EIQ+ GG ++ +A L + I + VF + ++ID +GVTKGKGF G +
Sbjct: 173 KKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVI 230
>sp|Q9V1T5|RL3_PYRAB 50S ribosomal protein L3P OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=rpl3p PE=3 SV=1
Length = 361
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 38/60 (63%)
Query: 52 KRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGFV 111
K +KK +ME + G SV +K + ++ L + + VG+V + E++D I VTKGKG +G V
Sbjct: 172 KLKKKPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPV 231
>sp|Q8TZZ8|RL3_PYRFU 50S ribosomal protein L3P OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=rpl3p PE=1 SV=1
Length = 365
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 38/60 (63%)
Query: 52 KRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGFV 111
K +KK +ME + G SV +K + ++ L + + VG+V + E++D I VTKGKG +G V
Sbjct: 175 KLKKKPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPV 234
>sp|C3MVH8|RL3_SULIM 50S ribosomal protein L3P OS=Sulfolobus islandicus (strain M.14.25
/ Kamchatka #1) GN=rpl3p PE=3 SV=1
Length = 351
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 54 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGFV 111
+K L+EIQ+ GG ++ +A L + I + VF + ++ID +GVTKGKGF G +
Sbjct: 173 KKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVI 230
>sp|C4KHF6|RL3_SULIK 50S ribosomal protein L3P OS=Sulfolobus islandicus (strain M.16.4 /
Kamchatka #3) GN=rpl3p PE=3 SV=1
Length = 351
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 54 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGFV 111
+K L+EIQ+ GG ++ +A L + I + VF + ++ID +GVTKGKGF G +
Sbjct: 173 KKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVI 230
>sp|C3N5S7|RL3_SULIA 50S ribosomal protein L3P OS=Sulfolobus islandicus (strain M.16.27)
GN=rpl3p PE=3 SV=1
Length = 351
Score = 47.4 bits (111), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 54 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGFV 111
+K L+EIQ+ GG ++ +A L + I + VF + ++ID +GVTKGKGF G +
Sbjct: 173 KKVPDLVEIQIGGGEKKAQLDYALNVLGKEISIKDVFKEGQLIDVVGVTKGKGFAGVI 230
>sp|C6A159|RL3_THESM 50S ribosomal protein L3P OS=Thermococcus sibiricus (strain MM 739
/ DSM 12597) GN=rpl3p PE=3 SV=1
Length = 359
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 40/67 (59%)
Query: 45 AHMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKG 104
A L + +KK +ME + G S+ +K + ++ L + I VG++ + E++D + VTKG
Sbjct: 163 ATQPWLARIKKKPEVMEYAVGGTSIEEKFNYIKEKLGKEIRVGEILQEGELLDIVAVTKG 222
Query: 105 KGFKGFV 111
KG +G V
Sbjct: 223 KGTQGPV 229
>sp|A4YCW6|RL3_METS5 50S ribosomal protein L3P OS=Metallosphaera sedula (strain ATCC
51363 / DSM 5348) GN=rpl3p PE=3 SV=1
Length = 341
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 37/58 (63%)
Query: 54 QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGFV 111
+K ++E+Q+ GG+ +++ + + L + V VF + +++D IGVTKG GF+G +
Sbjct: 163 KKTPDIVEVQIGGGNTKNQLEYGLKLLGNTLSVRDVFKEGQLMDIIGVTKGHGFQGVI 220
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.132 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,699,680
Number of Sequences: 539616
Number of extensions: 2441859
Number of successful extensions: 6013
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 5766
Number of HSP's gapped (non-prelim): 278
length of query: 172
length of database: 191,569,459
effective HSP length: 109
effective length of query: 63
effective length of database: 132,751,315
effective search space: 8363332845
effective search space used: 8363332845
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)