Query psy16477
Match_columns 172
No_of_seqs 269 out of 1129
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 22:18:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16477.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16477hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00103 60S ribosomal protein 100.0 3.3E-43 7.2E-48 315.0 8.9 96 16-117 140-235 (390)
2 KOG0746|consensus 100.0 2.8E-42 6E-47 304.2 4.3 105 3-115 119-223 (384)
3 TIGR03626 L3_arch archaeal rib 100.0 9.2E-36 2E-40 263.0 8.4 127 17-150 120-256 (330)
4 PRK04231 rpl3p 50S ribosomal p 100.0 1E-34 2.2E-39 257.0 9.5 124 18-150 128-261 (337)
5 PF00297 Ribosomal_L3: Ribosom 100.0 2.1E-29 4.6E-34 216.9 3.5 129 15-151 75-214 (263)
6 COG0087 RplC Ribosomal protein 99.9 2.3E-23 5E-28 175.9 6.7 110 28-151 56-174 (218)
7 TIGR03625 L3_bact 50S ribosoma 99.9 1.3E-21 2.9E-26 163.7 8.1 112 28-150 28-168 (202)
8 PRK00001 rplC 50S ribosomal pr 99.8 3.9E-21 8.5E-26 161.6 7.6 110 28-150 31-169 (210)
9 CHL00143 rpl3 ribosomal protei 99.8 6.5E-21 1.4E-25 160.0 7.3 112 28-150 31-170 (207)
10 KOG3141|consensus 99.6 2.7E-15 5.8E-20 131.6 4.5 75 56-139 138-215 (310)
11 KOG0746|consensus 58.8 3.3 7.2E-05 38.1 0.1 67 92-159 304-384 (384)
12 smart00739 KOW KOW (Kyprides, 43.2 30 0.00064 19.0 2.4 25 90-115 2-26 (28)
13 cd00018 AP2 DNA-binding domain 35.7 25 0.00054 23.4 1.5 33 106-139 2-36 (61)
14 PF13061 DUF3923: Protein of u 22.7 38 0.00082 24.0 0.6 16 127-142 25-40 (66)
15 PF08262 Lem_TRP: Leucophaea m 21.9 36 0.00078 16.3 0.3 6 105-110 4-9 (10)
No 1
>PTZ00103 60S ribosomal protein L3; Provisional
Probab=100.00 E-value=3.3e-43 Score=314.99 Aligned_cols=96 Identities=45% Similarity=0.604 Sum_probs=92.3
Q ss_pred hhhhcccccccccceeEEEEEeeecccccccchhhhhccCcceEEEEecCCCChhhhhHHHhhhCCCeeeccccccCCCe
Q psy16477 16 EIQLNGGSVADRQHITVCLKLAHTEDLYGAHMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEM 95 (172)
Q Consensus 16 ~~~~~~~~~~~k~~~~virvi~hT~~~~g~q~~~lgl~qKK~~l~Eirv~gg~~~~k~e~a~~~lGk~I~v~dvF~~Ge~ 95 (172)
+..+++.+++|+++|++||||+|| ||.+++|+||||||||||||||+++++++||+++||++|+++|+|++||+
T Consensus 140 ~~~~~~~~~~l~k~~~~IRvi~hT------qp~~~~l~kKkp~imEiqv~GGsv~~k~d~a~~llgk~i~v~dvF~~ge~ 213 (390)
T PTZ00103 140 KKAEERTLKRIKKYCSVIRVIAHT------QPSKLPLGQKKAHVMEIQVNGGSVAEKVDFAKSLLEKEVPVDSVFQQNEM 213 (390)
T ss_pred hhhHHHHHHHHhhcccEEEEEEEc------chhhcCcCCcCccEEEEeecCCCHHHHHHHHHHHhcCeechhhhccCCCE
Confidence 457888889999999999999999 99998999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecccccccceeecccc
Q psy16477 96 IDCIGVTKGKGFKGFVNSSLLF 117 (172)
Q Consensus 96 VDViGvTKGKGFqGvvKR~~F~ 117 (172)
|||||+|||||||||||||||.
T Consensus 214 VDVigvTKGKGfqGvvKRwg~~ 235 (390)
T PTZ00103 214 IDVIGVTKGHGFEGVVKRWGVT 235 (390)
T ss_pred eeeEEEEcCCccccCeeccccC
Confidence 9999999999999999999976
No 2
>KOG0746|consensus
Probab=100.00 E-value=2.8e-42 Score=304.25 Aligned_cols=105 Identities=53% Similarity=0.763 Sum_probs=100.8
Q ss_pred hhhHHHHHHHhhhhhhhcccccccccceeEEEEEeeecccccccchhhhhccCcceEEEEecCCCChhhhhHHHhhhCCC
Q psy16477 3 KLLKKRQKKAHLMEIQLNGGSVADRQHITVCLKLAHTEDLYGAHMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQ 82 (172)
Q Consensus 3 ~~~~~~~~k~~~~~~~~~~~~~~~k~~~~virvi~hT~~~~g~q~~~lgl~qKK~~l~Eirv~gg~~~~k~e~a~~~lGk 82 (172)
+.+++||+.. +.++++.++++|++||++||||+|| ||.+++++|||+||||||+|||+++++++||.+.+++
T Consensus 119 ~~~k~~~~~~--gk~~~~~~~~~~kky~~virv~aht------q~~~~~l~qkkahlmeiqvngGtia~KvdwA~~~lEk 190 (384)
T KOG0746|consen 119 KYCKKWQDED--GKKQLEKDFSSMKKYCQVIRVIAHT------QMRLLPLRQKKAHLMEIQVNGGTVAEKVDWARERLEK 190 (384)
T ss_pred HHhhhhhhhh--cchhhHHHHHHHHhhhheeeeeeec------hhhhhhhhhhhhhheeeeecCCcHHHHhHHHHhhhhc
Confidence 5677888766 8899999999999999999999999 9999999999999999999999999999999999999
Q ss_pred eeeccccccCCCeEEEEEEecccccccceeecc
Q psy16477 83 PIPVGQVFAQDEMIDCIGVTKGKGFKGFVNSSL 115 (172)
Q Consensus 83 ~I~v~dvF~~Ge~VDViGvTKGKGFqGvvKR~~ 115 (172)
+|+++++|+++|||||||+|||+||+||+.||+
T Consensus 191 qv~v~~vF~qdemId~IgvtkGkGykGvt~rw~ 223 (384)
T KOG0746|consen 191 QVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWH 223 (384)
T ss_pred cCchhhccccccccceeeeeecccccccccccc
Confidence 999999999999999999999999999999987
No 3
>TIGR03626 L3_arch archaeal ribosomal protein L3. This model describes exclusively the archaeal class of ribosomal protein L3. A separate model (TIGR03625) describes the bacterial/organelle form, and both belong to Pfam family pfam00297. Eukaryotic proteins are excluded from this model.
Probab=100.00 E-value=9.2e-36 Score=262.95 Aligned_cols=127 Identities=31% Similarity=0.443 Sum_probs=110.8
Q ss_pred hhhcccccccccceeEEEEEeeecccccccchhh-hhccCcceEEEEecCCCChhhhhHHHhhhCCCeeeccccccCCCe
Q psy16477 17 IQLNGGSVADRQHITVCLKLAHTEDLYGAHMKLL-KKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEM 95 (172)
Q Consensus 17 ~~~~~~~~~~k~~~~virvi~hT~~~~g~q~~~l-gl~qKK~~l~Eirv~gg~~~~k~e~a~~~lGk~I~v~dvF~~Ge~ 95 (172)
.++++.++.++++|++||||+|| ||.++ +++|||||||||+||||++++++|||++++|++|+++|+|++||+
T Consensus 120 ~~~~~~~~~l~~~~~~iRvi~~T------qp~~~~~~~kKkp~imEi~v~Gg~i~~k~~~a~~~lG~~i~v~dvF~~Ge~ 193 (330)
T TIGR03626 120 EKLEKIEELLENDADDVRLIVHT------QPKLVTGVPKKKPEIMEIRIGGGSVEERFEYALSILGKEISVSDVFKEGQL 193 (330)
T ss_pred hHHHHHHHHHhcCceEEEEEEEe------ccccccCcccCCccEEEEeecCCCHHHHhHhhHhcCCcEEehhheecCCCE
Confidence 45677777788789999999999 99988 799999999999999999999999999999999999889999999
Q ss_pred EEEEEEecccccccceeeccccCcc-ccc-ccccccccC-cCCCChh------hhhcccccchh
Q psy16477 96 IDCIGVTKGKGFKGFVNSSLLFRDS-KIT-SIISAKFGH-GRFQTPA------DKLAFMGYLKK 150 (172)
Q Consensus 96 VDViGvTKGKGFqGvvKR~~F~r~~-~~~-~~tssk~Gh-G~fqT~~------ek~~f~G~~kk 150 (172)
|||+|+|||||||||||||||.+.. +++ +-..++.|. |++ +|. ...++||++++
T Consensus 194 VDV~gvTKGKGfqGvvKRwg~~~~p~~hg~~~~~R~~GsiG~~-~P~rV~~~~~maGqmG~~~r 256 (330)
T TIGR03626 194 VDVIAVTKGKGFQGVVKRWGVKLLPRKHKRRKGGRHIGTLGPW-TPSRVRWTVPQAGQMGYHQR 256 (330)
T ss_pred EEEEEEEcCCccccCeeccccCCCCCccCCCCCCCCCcccCCC-CCCcccCCcccCCCCCCceE
Confidence 9999999999999999999999876 333 113456666 664 444 78899999885
No 4
>PRK04231 rpl3p 50S ribosomal protein L3P; Reviewed
Probab=100.00 E-value=1e-34 Score=257.05 Aligned_cols=124 Identities=31% Similarity=0.475 Sum_probs=107.5
Q ss_pred hhcccccccccceeEEEEEeeecccccccchhh-hhccCcceEEEEecCCCChhhhhHHHhhhCCCeeeccccccCCCeE
Q psy16477 18 QLNGGSVADRQHITVCLKLAHTEDLYGAHMKLL-KKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMI 96 (172)
Q Consensus 18 ~~~~~~~~~k~~~~virvi~hT~~~~g~q~~~l-gl~qKK~~l~Eirv~gg~~~~k~e~a~~~lGk~I~v~dvF~~Ge~V 96 (172)
+++.+++. ++|++||+|+|| ||.++ ||+|||||||||+|+||++++++|||++++|++|+++|+|++||+|
T Consensus 128 ~~~~~~~~--~~~~~vR~i~~T------qp~~~~~l~kKkp~i~Ei~v~Gg~i~~k~~~a~~llG~~i~v~dvF~~Ge~V 199 (337)
T PRK04231 128 KLLKLLEE--GKIVDVRVIVHT------QPKLVTGVPKKKPEIMEIRIGGGSVEERLEYAKELLGKEISISDVFKEGQLV 199 (337)
T ss_pred HHHHHhhc--CCeeEEEEEEEe------chhhccCCCCCCCCEEEEeecCCCHHHHHHHHHHhcCCccchhhhccCCCEE
Confidence 34444443 789999999999 99997 8999999999999999999999999999999999998899999999
Q ss_pred EEEEEecccccccceeeccccCcc-ccc-ccccccccC-cCCCChh------hhhcccccchh
Q psy16477 97 DCIGVTKGKGFKGFVNSSLLFRDS-KIT-SIISAKFGH-GRFQTPA------DKLAFMGYLKK 150 (172)
Q Consensus 97 DViGvTKGKGFqGvvKR~~F~r~~-~~~-~~tssk~Gh-G~fqT~~------ek~~f~G~~kk 150 (172)
||+|+|||||||||||||||.+.. +++ +...++.|. |++ +|. ...++||++++
T Consensus 200 DV~gvTKGKGfqGvvKRwg~~~~p~~Hg~~~~~R~~GsiG~~-~P~rV~~~~~maGqmG~~~r 261 (337)
T PRK04231 200 DVIAVTKGKGFQGVVKRWGVKLLPRKHKRRGGSRHIGTLGPW-NPSRVMWTVPQAGQMGFHQR 261 (337)
T ss_pred EEEEEEeCCccccCeeccCcCCCCCccCCCCCCCCCcccCCC-CCCcccCCCccCCCCCCceE
Confidence 999999999999999999999876 333 223567777 775 555 78899999886
No 5
>PF00297 Ribosomal_L3: Ribosomal protein L3; InterPro: IPR000597 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L3 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L3 is known to bind to the 23S rRNA and may participate in the formation of the peptidyltransferase centre of the ribosome. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities includes bacterial, red algal, cyanelle, mammalian, yeast and Arabidopsis thaliana L3 proteins; archaeal Haloarcula marismortui HmaL3 (HL1), and yeast mitochondrial YmL9 [, , , ].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3UZ8_E 2X9U_E 3UZ1_E 3KNM_E 4ABS_E 2WDI_E 3UYG_E 4DHC_E 2J01_E 2Y11_E ....
Probab=99.95 E-value=2.1e-29 Score=216.93 Aligned_cols=129 Identities=29% Similarity=0.398 Sum_probs=107.9
Q ss_pred hhhhhcccccccccceeEEEEEeeecccccccchhhhhccCcceEEEEecCCCChhhhhHHHhhhCC--CeeeccccccC
Q psy16477 15 MEIQLNGGSVADRQHITVCLKLAHTEDLYGAHMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLE--QPIPVGQVFAQ 92 (172)
Q Consensus 15 ~~~~~~~~~~~~k~~~~virvi~hT~~~~g~q~~~lgl~qKK~~l~Eirv~gg~~~~k~e~a~~~lG--k~I~v~dvF~~ 92 (172)
+...+...+..+++.+..+|+|+|| ++..+++++++++|+||+++++++++++|||.++++ ++|+++|+|.+
T Consensus 75 g~~a~~~~~~~~~~~~~~~~~~~~~------~~~~~~i~~~k~~i~E~~v~~~~~~~~~~~a~~~l~~G~~i~v~dvF~~ 148 (263)
T PF00297_consen 75 GYKAVQLGFGEKKEKRVSKRLLGHF------QKAGVPIPKKKPHIMEFRVSGGDVEEKLEYAKELLGVGKEIKVNDVFKE 148 (263)
T ss_dssp SCHCCEECCCHHCCSTSCCECCEEH------HGGGSSSS-CSSEEEEEECESSSHHHHHHHHHHHCSCSSEBSCCTTSST
T ss_pred cchhhhhhhhhccccccchhhhhcc------cccccchhhccceeEEecccccChhHhhhhhhhhcCccceeehhheecc
Confidence 3444556666777889999999999 999999999999999999999999999999998887 99999999999
Q ss_pred CCeEEEEEEecccccccceeeccccCcc-ccc-ccccccccC-cCCCChh------hhhcccccchhh
Q psy16477 93 DEMIDCIGVTKGKGFKGFVNSSLLFRDS-KIT-SIISAKFGH-GRFQTPA------DKLAFMGYLKKD 151 (172)
Q Consensus 93 Ge~VDViGvTKGKGFqGvvKR~~F~r~~-~~~-~~tssk~Gh-G~fqT~~------ek~~f~G~~kk~ 151 (172)
||+|||+|+|||||||||||||||.+.. +++ +. .++.|. |. ++|. .-.++||++++.
T Consensus 149 Gq~VDV~gvTKGKGFqGv~KR~gf~~~p~sHg~~~-hR~~GsiG~-~~PgrV~~g~kmaGqmG~~~rT 214 (263)
T PF00297_consen 149 GQYVDVIGVTKGKGFQGVMKRWGFKGGPASHGSSK-HRKPGSIGA-WTPGRVFKGKKMAGQMGNHRRT 214 (263)
T ss_dssp TSEEEEEEEE-EEEEETHHHHCSS--S-SSSSSTT-SSSSS-SSC-SSSSSCGTTSTSSEEESSSEEE
T ss_pred cceEEEEEeecCccccccccccCCCccCCCCCCcc-cCCCCcccc-cccceeecccccCccccceEEE
Confidence 9999999999999999999999999986 555 32 688888 88 7886 678899988763
No 6
>COG0087 RplC Ribosomal protein L3 [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=2.3e-23 Score=175.90 Aligned_cols=110 Identities=33% Similarity=0.448 Sum_probs=88.5
Q ss_pred cceeEEEEEeeecccccccchhhhhccCcceEEEEecCCCChhhhhHHHhhhCCCeeeccccccCCCeEEEEEEeccccc
Q psy16477 28 QHITVCLKLAHTEDLYGAHMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGF 107 (172)
Q Consensus 28 ~~~~virvi~hT~~~~g~q~~~lgl~qKK~~l~Eirv~gg~~~~k~e~a~~~lGk~I~v~dvF~~Ge~VDViGvTKGKGF 107 (172)
+.+.++|.+++| +++ ++.+++++|+|||+++.+..+.+|| |++|.+ |+|++||+|||+|+||||||
T Consensus 56 k~~~~~k~~~g~------~~k--~~~~~k~~l~E~rv~~~~~~~~~e~-----g~ei~~-dvF~~g~~VDV~gvTKGKGF 121 (218)
T COG0087 56 KAKRVNKPLVGH------FAK--AGVKPKRHLAEFRVGGGDVAEKFEV-----GQEITV-DVFKEGELVDVTGVTKGKGF 121 (218)
T ss_pred eeehhccceeee------ecc--cCCCCCCeEEEEEecCccccceech-----hhhhch-hhccCCCEEEEEEEeccccc
Confidence 336678888888 888 5678999999999988776666765 566666 79999999999999999999
Q ss_pred ccceeeccccCcc-ccc-ccccccccC-cCCCChh------hhhcccccchhh
Q psy16477 108 KGFVNSSLLFRDS-KIT-SIISAKFGH-GRFQTPA------DKLAFMGYLKKD 151 (172)
Q Consensus 108 qGvvKR~~F~r~~-~~~-~~tssk~Gh-G~fqT~~------ek~~f~G~~kk~ 151 (172)
||+||||||.++. +++ +...+..|. |.=|||. .-.+.||.++..
T Consensus 122 ~G~~KR~gf~~~p~sHg~~~~hR~~GSiG~~~~P~rV~~g~kmaG~mG~~~vT 174 (218)
T COG0087 122 QGVMKRWGFKGGPASHGSSLSHRRPGSIGQRQTPGRVFKGKKMAGHMGNERVT 174 (218)
T ss_pred ceeeeecccccCCcccCCCccccCCcccCCCCCCCceeCCCccCccCCCceEE
Confidence 9999999999986 555 335677777 7335666 778889987763
No 7
>TIGR03625 L3_bact 50S ribosomal protein L3, bacterial. This model describes bacterial (and mitochondrial and chloroplast) class of ribosomal protein L3. A separate model describes the archaeal form, where both belong to Pfam family pfam00297. The name is phrased to meet the needs of bacterial genome annotation. Organellar forms typically will have transit peptides, N-terminal to the region modeled here.
Probab=99.85 E-value=1.3e-21 Score=163.68 Aligned_cols=112 Identities=25% Similarity=0.309 Sum_probs=89.5
Q ss_pred cceeEEEEEeeecccccccchhhhhccC--------------------cceEEEEecCCCChhhhhHHHhhhCCCeeecc
Q psy16477 28 QHITVCLKLAHTEDLYGAHMKLLKKRQK--------------------KAHLMEIQLNGGSVADKIAWARQHLEQPIPVG 87 (172)
Q Consensus 28 ~~~~virvi~hT~~~~g~q~~~lgl~qK--------------------K~~l~Eirv~gg~~~~k~e~a~~~lGk~I~v~ 87 (172)
+.|.|+++. |.+.+||...+||...+ +++|.||++...+ ++ .+|++|++
T Consensus 28 ~~~~V~q~k--t~e~dGY~AvqvG~~~~~~~~~~Kp~~G~f~Kag~~pkr~l~Efrv~~~~-----~~---~~G~~l~v- 96 (202)
T TIGR03625 28 GPNVVTQVK--TVEKDGYSAVQLGFGEKKEKRVNKPEAGHFAKAGVEPKRHLREFRVDDLE-----GY---EVGDEITV- 96 (202)
T ss_pred CCcEEEEEe--CCCCCCcEEEEEeccccccccCChhhhhHHHHcCCCcCcEEEEEEcCCcc-----cC---CCCCEEEe-
Confidence 568888875 55688998888766433 2589999986521 34 59999999
Q ss_pred ccccCCCeEEEEEEecccccccceeeccccCcc-ccc-ccccccccC-cCCCChh------hhhcccccchh
Q psy16477 88 QVFAQDEMIDCIGVTKGKGFKGFVNSSLLFRDS-KIT-SIISAKFGH-GRFQTPA------DKLAFMGYLKK 150 (172)
Q Consensus 88 dvF~~Ge~VDViGvTKGKGFqGvvKR~~F~r~~-~~~-~~tssk~Gh-G~fqT~~------ek~~f~G~~kk 150 (172)
|+|.+||+|||+|+|||||||||||||||++++ +++ +...+..|. |..|+|. .-.+.||..+.
T Consensus 97 ~~F~~G~~VDV~g~skGKGFqGvmKR~gf~g~~~sHG~s~~hR~~GSiG~~~~PgrV~kgkkm~G~mG~~~~ 168 (202)
T TIGR03625 97 DIFEAGQKVDVTGTSKGKGFAGVMKRHNFSGGPASHGNSKSHRAPGSIGQRQTPGRVFKGKKMAGHMGNERV 168 (202)
T ss_pred eeecCCCEEEEEEEEcCCcceeceEecccCCCCcccCCCCCCCCCCccCCCCCCCeEcCCCccCCCcCCeeE
Confidence 799999999999999999999999999999987 666 345577888 9998887 56778887764
No 8
>PRK00001 rplC 50S ribosomal protein L3; Validated
Probab=99.84 E-value=3.9e-21 Score=161.63 Aligned_cols=110 Identities=26% Similarity=0.324 Sum_probs=88.6
Q ss_pred cceeEEEEEeeecccccccchhhhhccC--------------------cceEEEEecCCCChhhhhHHHhhhCCCeeecc
Q psy16477 28 QHITVCLKLAHTEDLYGAHMKLLKKRQK--------------------KAHLMEIQLNGGSVADKIAWARQHLEQPIPVG 87 (172)
Q Consensus 28 ~~~~virvi~hT~~~~g~q~~~lgl~qK--------------------K~~l~Eirv~gg~~~~k~e~a~~~lGk~I~v~ 87 (172)
+.|.|+++. |.+.+||...++|...+ +++|.||+.+. +| .+|++|++
T Consensus 31 ~~~~V~~~k--t~e~dGY~avqvG~~~~~~~~~~Kp~~G~f~kag~~pkr~l~Efr~~~-------~~---~~G~~l~v- 97 (210)
T PRK00001 31 GPNVVTQVK--TVEKDGYNAVQLGFGDKKEKRVNKPEAGHFAKAGVEPKRHLREFRVVE-------EY---EVGQEITV- 97 (210)
T ss_pred cCcEEEEEe--CCCCCCcEEEEEeccccCcccCCHHHhHHHHHcCCCcceEEEEEccCC-------CC---CCCCEEee-
Confidence 568888876 45588999888876544 36899999432 24 58999999
Q ss_pred ccccCCCeEEEEEEecccccccceeeccccCcc-ccc-ccccccccC-cCCCChh------hhhcccccchh
Q psy16477 88 QVFAQDEMIDCIGVTKGKGFKGFVNSSLLFRDS-KIT-SIISAKFGH-GRFQTPA------DKLAFMGYLKK 150 (172)
Q Consensus 88 dvF~~Ge~VDViGvTKGKGFqGvvKR~~F~r~~-~~~-~~tssk~Gh-G~fqT~~------ek~~f~G~~kk 150 (172)
|+|++||+|||+|+|||||||||||||||.++. +++ +...+..|. |..|||. .-.+.||..+.
T Consensus 98 ~~F~~G~~VDV~g~tKGKGFqGvmKR~gf~g~p~sHG~s~~hR~~GSiG~~~~PgrV~kgkkmaG~mG~~~~ 169 (210)
T PRK00001 98 DIFEAGQKVDVTGTSKGKGFAGVIKRHNFSGGPASHGNSRSHRRPGSIGARQTPGRVFKGKKMAGHMGNERV 169 (210)
T ss_pred hhccCCCEEEEEEEEcCCcceeceEecccCCCCCcCCcCcCCcCCcccCCCCCCCeECCCcccCCCCCCeEE
Confidence 699999999999999999999999999999986 566 445677888 8888887 56778888764
No 9
>CHL00143 rpl3 ribosomal protein L3; Validated
Probab=99.83 E-value=6.5e-21 Score=160.00 Aligned_cols=112 Identities=21% Similarity=0.252 Sum_probs=87.0
Q ss_pred cceeEEEEEeeecccccccchhhhhccC--------------------cceEEEEecCCCChhhhhHHHhhhCCCeeecc
Q psy16477 28 QHITVCLKLAHTEDLYGAHMKLLKKRQK--------------------KAHLMEIQLNGGSVADKIAWARQHLEQPIPVG 87 (172)
Q Consensus 28 ~~~~virvi~hT~~~~g~q~~~lgl~qK--------------------K~~l~Eirv~gg~~~~k~e~a~~~lGk~I~v~ 87 (172)
+.|.|+++. |.+.+||...+||...+ +++|.||++... + +| .+|++|++
T Consensus 31 ~~~~V~~~k--t~e~dGY~avqvg~~~~~~k~~~K~~~G~f~ka~v~p~r~l~Efrv~~~--~---~~---~vG~~l~v- 99 (207)
T CHL00143 31 GPCVITQIK--TLTTDGYNAIQIGYKQVSTKKLTKPQLGHLQKSNVPPLKYLKEFRVKSS--E---EF---EVGQPLTV- 99 (207)
T ss_pred CCeEEEEEe--cCCCCCcEEEEEeeeecccccCChhhcchhHHcCCCcceEEEEEEcCCc--c---cC---CCCCEEEh-
Confidence 568887765 55689999888765422 367999998652 1 34 59999999
Q ss_pred ccccCCCeEEEEEEecccccccceeeccccCcc-cccccccccccC-cCCCChh------hhhcccccchh
Q psy16477 88 QVFAQDEMIDCIGVTKGKGFKGFVNSSLLFRDS-KITSIISAKFGH-GRFQTPA------DKLAFMGYLKK 150 (172)
Q Consensus 88 dvF~~Ge~VDViGvTKGKGFqGvvKR~~F~r~~-~~~~~tssk~Gh-G~fqT~~------ek~~f~G~~kk 150 (172)
++|.+||+|||+|+|||||||||||||||++++ ++++-..+..|. |.-|||. .-.+.||..+.
T Consensus 100 ~~F~~Gq~VDV~g~sKGKGF~GvmKR~gF~g~pasHGs~~HR~~GSiG~~~~PgRV~kGkKMpG~mG~~~~ 170 (207)
T CHL00143 100 DAFSVGQLVNVSGKSIGKGFAGLQKRHNFSRGPMTHGSKNHRAPGSIGAGTTPGRVYPGKKMAGRLGNKKV 170 (207)
T ss_pred hhccCCCEEEEEEEecCCcceeeeEeeccCCCCCccCCCCCCCCcccCCCCCCCeEcCCCccCCCCCCeeE
Confidence 589999999999999999999999999999986 677435677787 8888887 34566776543
No 10
>KOG3141|consensus
Probab=99.55 E-value=2.7e-15 Score=131.60 Aligned_cols=75 Identities=27% Similarity=0.338 Sum_probs=60.0
Q ss_pred cceEEEEecCCCChhhhhHHHhhhCCCeeeccccccCCCeEEEEEEecccccccceeeccccCcc-ccc-ccccccccC-
Q psy16477 56 KAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTKGKGFKGFVNSSLLFRDS-KIT-SIISAKFGH- 132 (172)
Q Consensus 56 K~~l~Eirv~gg~~~~k~e~a~~~lGk~I~v~dvF~~Ge~VDViGvTKGKGFqGvvKR~~F~r~~-~~~-~~tssk~Gh- 132 (172)
|.||.||+|.. =|..-.|+.+.+ ++|.+||+|||+|+|+|||||||||||+|.|.. ++| +.+.+..|.
T Consensus 138 K~~l~eF~Vt~--------~al~~pGt~l~~-~hFk~GqyVDV~g~TigkGFqGvmKR~GFkG~pasHG~sksHR~~GS~ 208 (310)
T KOG3141|consen 138 KRHLREFRVTE--------EALLPPGTPLFA-RHFKPGQYVDVTGKTIGKGFQGVMKRHGFKGGPASHGTSKSHRRPGSI 208 (310)
T ss_pred hhhhheEeech--------hccCCCCcccch-hhcCCCceEEEEeeEeccccccceeeccccCCccccCccccccCCccc
Confidence 36888998762 122247999999 599999999999999999999999999999986 777 456777777
Q ss_pred cCCCChh
Q psy16477 133 GRFQTPA 139 (172)
Q Consensus 133 G~fqT~~ 139 (172)
|.=+|+.
T Consensus 209 G~~~~pg 215 (310)
T KOG3141|consen 209 GQGTTPG 215 (310)
T ss_pred cCCCCCc
Confidence 6555554
No 11
>KOG0746|consensus
Probab=58.82 E-value=3.3 Score=38.14 Aligned_cols=67 Identities=43% Similarity=0.599 Sum_probs=49.5
Q ss_pred CCCeEEEEEEecccccccceeeccccCcc------c-----cc-cc--ccccccCcCCCChhhhhcccccchhhhhHHHH
Q psy16477 92 QDEMIDCIGVTKGKGFKGFVNSSLLFRDS------K-----IT-SI--ISAKFGHGRFQTPADKLAFMGYLKKDRIREEE 157 (172)
Q Consensus 92 ~Ge~VDViGvTKGKGFqGvvKR~~F~r~~------~-----~~-~~--tssk~GhG~fqT~~ek~~f~G~~kk~~~~~~~ 157 (172)
=|+..+..-+.||- --|.-||-.--|.| + +. +| |+|+||||||||++||++|||||++|++++||
T Consensus 304 YG~V~ndfvM~kgc-vvg~kKrv~TLrksll~qtkr~alE~i~lKfiDTtSkfGhgrFQT~~EKkAFmgpLkKD~~aeee 382 (384)
T KOG0746|consen 304 YGEVINDFVMLKGC-VVGPKKRVVTLRKSLLKQTKRRALEKIVLKFIDTTSKFGHGRFQTVEEKKAFMGPLKKDLLAEEE 382 (384)
T ss_pred eeeeechheeeccc-ccCccccccchhhhhhhhhhhhhhhcccceeeeeccccCCcccccHHHHHHHhhhHhhhhhhhhc
Confidence 46666666777765 34555664433332 2 22 33 99999999999999999999999999999998
Q ss_pred Hh
Q psy16477 158 KK 159 (172)
Q Consensus 158 ~~ 159 (172)
++
T Consensus 383 ~a 384 (384)
T KOG0746|consen 383 GA 384 (384)
T ss_pred cC
Confidence 64
No 12
>smart00739 KOW KOW (Kyprides, Ouzounis, Woese) motif. Motif in ribosomal proteins, NusG, Spt5p, KIN17 and T54.
Probab=43.16 E-value=30 Score=19.03 Aligned_cols=25 Identities=24% Similarity=0.159 Sum_probs=19.2
Q ss_pred ccCCCeEEEEEEecccccccceeecc
Q psy16477 90 FAQDEMIDCIGVTKGKGFKGFVNSSL 115 (172)
Q Consensus 90 F~~Ge~VDViGvTKGKGFqGvvKR~~ 115 (172)
|.+|+.|-|++ -.-+|+.|.+.+.+
T Consensus 2 ~~~G~~V~I~~-G~~~g~~g~i~~i~ 26 (28)
T smart00739 2 FEVGDTVRVIA-GPFKGKVGKVLEVD 26 (28)
T ss_pred CCCCCEEEEeE-CCCCCcEEEEEEEc
Confidence 67899999888 45778888887654
No 13
>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.
Probab=35.74 E-value=25 Score=23.35 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=17.2
Q ss_pred ccccceeeccccCcc-cccccccccccC-cCCCChh
Q psy16477 106 GFKGFVNSSLLFRDS-KITSIISAKFGH-GRFQTPA 139 (172)
Q Consensus 106 GFqGvvKR~~F~r~~-~~~~~tssk~Gh-G~fqT~~ 139 (172)
||.||-.+.. .+|. ++..-...+..+ |.|.|+|
T Consensus 2 ~~~GV~~~~~-gkw~A~I~~~~~gk~~~lG~f~t~e 36 (61)
T cd00018 2 KYRGVRQRPW-GKWVAEIRDPSGGRRIWLGTFDTAE 36 (61)
T ss_pred CccCEEECCC-CcEEEEEEeCCCCceEccCCCCCHH
Confidence 6788875543 5554 332101123344 7787755
No 14
>PF13061 DUF3923: Protein of unknown function (DUF3923)
Probab=22.72 E-value=38 Score=24.02 Aligned_cols=16 Identities=44% Similarity=0.412 Sum_probs=12.2
Q ss_pred cccccCcCCCChhhhh
Q psy16477 127 SAKFGHGRFQTPADKL 142 (172)
Q Consensus 127 ssk~GhG~fqT~~ek~ 142 (172)
++==|||..||++-|-
T Consensus 25 R~vDgaGv~qT~~~k~ 40 (66)
T PF13061_consen 25 RKVDGAGVVQTPELKL 40 (66)
T ss_pred eeccccccccCHHHHH
Confidence 3444899999999764
No 15
>PF08262 Lem_TRP: Leucophaea maderae tachykinin-related peptide ; InterPro: IPR013206 These peptides are designated Leucophaea maderae (Madeira cockroach) tachykinin-related peptides (Lem TRPs). Some were isolated from the midgut of L. maderae, whereas others appear to be brain specific. The Lem TRPs of the brain are myotropic and induce increases in the amplitude and frequency of spontaneous contractions and tonus of hindgut muscle in L. maderae []. They were also isolated from brain-corpora, cardiaca-corpora, allata-suboesophageal ganglion extracts of Locusta migratoria (Migratory locust). They stimulate visceral muscle contractions of the oviduct and the foregut of L. migratoria [].
Probab=21.88 E-value=36 Score=16.31 Aligned_cols=6 Identities=50% Similarity=1.165 Sum_probs=4.1
Q ss_pred cccccc
Q psy16477 105 KGFKGF 110 (172)
Q Consensus 105 KGFqGv 110 (172)
-||+|+
T Consensus 4 mgf~g~ 9 (10)
T PF08262_consen 4 MGFHGM 9 (10)
T ss_pred cccccc
Confidence 478875
Done!