Query psy16477
Match_columns 172
No_of_seqs 269 out of 1129
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 22:19:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16477.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16477hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a17_B RPL3, ribosomal protein 100.0 4.5E-46 1.5E-50 332.7 5.8 97 17-119 140-236 (391)
2 3u5e_B 60S ribosomal protein L 100.0 1.4E-45 4.7E-50 329.3 6.6 105 9-119 134-238 (387)
3 3iz5_C 60S ribosomal protein L 100.0 2.8E-45 9.6E-50 327.4 4.6 99 15-119 142-241 (389)
4 2zkr_b 60S ribosomal protein L 100.0 1.9E-44 6.6E-49 323.5 0.6 107 4-118 133-239 (403)
5 3j21_C 50S ribosomal protein L 100.0 5.8E-37 2E-41 272.1 5.1 128 15-151 143-280 (365)
6 1vq8_B 50S ribosomal protein L 100.0 1.1E-31 3.8E-36 236.7 7.2 123 21-150 127-263 (338)
7 3bbo_F Ribosomal protein L3; l 99.9 4.1E-24 1.4E-28 183.0 1.7 113 29-150 73-213 (259)
8 2zjr_B 50S ribosomal protein L 99.9 1.3E-22 4.5E-27 169.2 5.3 107 28-150 29-165 (211)
9 2ftc_C L3MT, MRP-L3, mitochond 99.9 6.8E-22 2.3E-26 165.1 7.6 111 28-150 30-171 (211)
10 3r8s_D 50S ribosomal protein L 99.9 3.8E-22 1.3E-26 166.5 5.8 112 28-150 30-170 (209)
11 3v2d_E 50S ribosomal protein L 99.8 6.4E-22 2.2E-26 164.8 6.4 108 28-150 29-165 (206)
No 1
>4a17_B RPL3, ribosomal protein L3; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_B 4a1c_B 4a1e_B
Probab=100.00 E-value=4.5e-46 Score=332.72 Aligned_cols=97 Identities=40% Similarity=0.570 Sum_probs=93.6
Q ss_pred hhhcccccccccceeEEEEEeeecccccccchhhhhccCcceEEEEecCCCChhhhhHHHhhhCCCeeeccccccCCCeE
Q psy16477 17 IQLNGGSVADRQHITVCLKLAHTEDLYGAHMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMI 96 (172)
Q Consensus 17 ~~~~~~~~~~k~~~~virvi~hT~~~~g~q~~~lgl~qKK~~l~Eirv~gg~~~~k~e~a~~~lGk~I~v~dvF~~Ge~V 96 (172)
+++++++++|+++|+|||||+|| ||.+++|+||||||||||||||++++++|||+++||++|+|+|+|++||+|
T Consensus 140 ~~~~~~~~~~~k~~~viRvi~hT------qp~l~~l~qKK~~imEiqV~GGsv~~k~~~a~~~lg~~i~v~~vF~~ge~V 213 (391)
T 4a17_B 140 KAQDLLLKRIEKYCSVVRVIAHT------NMSKLNLRQKKNHILEIQVNGGKVAEKVAFAKSLLEKEVKVDSIFAENEML 213 (391)
T ss_dssp HHHHHHHHHHHHHCSEEEEEEEE------CGGGSCSSCCCCEEEEEEEECSCHHHHHHHHHHHTTCEECHHHHCCTTCEE
T ss_pred hHHHHHHHHhhhcccEEEEEEec------cccccCcCCCCceEEEEEecCCCHHHHHHHHHhhcCCEEehhHhcCCCCEE
Confidence 67889999999999999999999 999999999999999999999999999999999999999998899999999
Q ss_pred EEEEEecccccccceeeccccCc
Q psy16477 97 DCIGVTKGKGFKGFVNSSLLFRD 119 (172)
Q Consensus 97 DViGvTKGKGFqGvvKR~~F~r~ 119 (172)
||+|+|||||||||||||||.+.
T Consensus 214 DV~gvTKGKGfqGvvKRwg~~~~ 236 (391)
T 4a17_B 214 DVLGVTKGKGFAGVIKRFGVKHL 236 (391)
T ss_dssp EEEEECCCCCEECHHHHHCCCCC
T ss_pred EEEEEEeCcccceeeeecccCCC
Confidence 99999999999999999998764
No 2
>3u5e_B 60S ribosomal protein L3; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3o5h_C 3o58_C 3u5i_B 4b6a_B 3izc_C 3izs_C 1s1i_C 3jyw_C
Probab=100.00 E-value=1.4e-45 Score=329.28 Aligned_cols=105 Identities=39% Similarity=0.557 Sum_probs=96.8
Q ss_pred HHHHhhhhhhhcccccccccceeEEEEEeeecccccccchhhhhccCcceEEEEecCCCChhhhhHHHhhhCCCeeeccc
Q psy16477 9 QKKAHLMEIQLNGGSVADRQHITVCLKLAHTEDLYGAHMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQ 88 (172)
Q Consensus 9 ~~k~~~~~~~~~~~~~~~k~~~~virvi~hT~~~~g~q~~~lgl~qKK~~l~Eirv~gg~~~~k~e~a~~~lGk~I~v~d 88 (172)
.||.....+++++++++|+++|++||||+|| ||.+++|+||||||||||||||++++++|||++++|++|+|+|
T Consensus 134 ~kk~~~~~~~~~~~~~~~~k~~~viRvi~hT------qp~l~~l~qKK~~imEiqV~Ggsv~~k~~~a~~~lg~~i~v~~ 207 (387)
T 3u5e_B 134 SAKYAQDGAGIERELARIKKYASVVRVLVHT------QIRKTPLAQKKAHLAEIQLNGGSISEKVDWAREHFEKTVAVDS 207 (387)
T ss_dssp GGGGSSSSHHHHHHHHHHHHSCSEEEEEEEC------CGGGSSCSCCSCCEEEEECCSSCHHHHHHHHHHTTTCEECGGG
T ss_pred cccccchhHHHHHHHHHhhhcccEEEEEEec------cccccCccccCceeEEEEecCCCHHHHHHHHHhccCCEechHH
Confidence 3343323377899999999999999999999 9999999999999999999999999999999999999999988
Q ss_pred cccCCCeEEEEEEecccccccceeeccccCc
Q psy16477 89 VFAQDEMIDCIGVTKGKGFKGFVNSSLLFRD 119 (172)
Q Consensus 89 vF~~Ge~VDViGvTKGKGFqGvvKR~~F~r~ 119 (172)
+|++||+|||+|+|||||||||||||||.+.
T Consensus 208 vF~~ge~VDV~gvTKGKGfqGvvKRwg~~~~ 238 (387)
T 3u5e_B 208 VFEQNEMIDAIAVTKGHGFEGVTHRWGTKKL 238 (387)
T ss_dssp TCCTTCEEEEEEECCCCCEECHHHHHCCCCC
T ss_pred hccCCCEEEEEEEEcCccceeeeeecccCCC
Confidence 9999999999999999999999999998764
No 3
>3iz5_C 60S ribosomal protein L3 (L3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_C
Probab=100.00 E-value=2.8e-45 Score=327.44 Aligned_cols=99 Identities=40% Similarity=0.620 Sum_probs=95.5
Q ss_pred hhhhhcccccccccceeEEEEEeeecccccccchhh-hhccCcceEEEEecCCCChhhhhHHHhhhCCCeeeccccccCC
Q psy16477 15 MEIQLNGGSVADRQHITVCLKLAHTEDLYGAHMKLL-KKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQD 93 (172)
Q Consensus 15 ~~~~~~~~~~~~k~~~~virvi~hT~~~~g~q~~~l-gl~qKK~~l~Eirv~gg~~~~k~e~a~~~lGk~I~v~dvF~~G 93 (172)
+.+++++++++|+++|+|||||+|| ||.++ +|+||||||||||||||++++++|||++++|++|+|+|+|++|
T Consensus 142 g~~~~~~~~~~~~k~~~viRvi~hT------qp~l~~~l~qKK~~imEiqVnGgsv~~k~d~a~~~lg~~i~v~~vF~~g 215 (389)
T 3iz5_C 142 GKKEIQLQLEKMKKYATIVRVIAHT------QIRKMKGLKQKKAHLMEIQVNGGTIADKVDYGYKFFEKEVPVEAVFQKD 215 (389)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEEE------CGGGCSSSCCCCCEEEEEEBCCSCHHHHHHHHHHHHTSCBCGGGTCCTT
T ss_pred hhhHHHHHHHHhhhcccEEEEEEec------ccccccCCccCCceEEEEEecCCCHHHHHHHHHhcCCCEEehhhccCCC
Confidence 5688999999999999999999999 99999 9999999999999999999999999999999999998899999
Q ss_pred CeEEEEEEecccccccceeeccccCc
Q psy16477 94 EMIDCIGVTKGKGFKGFVNSSLLFRD 119 (172)
Q Consensus 94 e~VDViGvTKGKGFqGvvKR~~F~r~ 119 (172)
|+|||+|+|||||||||||||||.+.
T Consensus 216 e~VDV~gvTKGKGfqGvvKRwg~~~~ 241 (389)
T 3iz5_C 216 EMVDIIGVTKGKGYEGVVTRWGVTRL 241 (389)
T ss_dssp CEEEEEEECCEEEEECHHHHHCCCCC
T ss_pred CEEEEEEEecCcccccceeecccCCC
Confidence 99999999999999999999998764
No 4
>2zkr_b 60S ribosomal protein L3; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=1.9e-44 Score=323.53 Aligned_cols=107 Identities=51% Similarity=0.717 Sum_probs=98.4
Q ss_pred hhHHHHHHHhhhhhhhcccccccccceeEEEEEeeecccccccchhhhhccCcceEEEEecCCCChhhhhHHHhhhCCCe
Q psy16477 4 LLKKRQKKAHLMEIQLNGGSVADRQHITVCLKLAHTEDLYGAHMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP 83 (172)
Q Consensus 4 ~~~~~~~k~~~~~~~~~~~~~~~k~~~~virvi~hT~~~~g~q~~~lgl~qKK~~l~Eirv~gg~~~~k~e~a~~~lGk~ 83 (172)
+.+||++. .+.++++++|+.|++||++||||+|| ||.+++++||++|||||||+|++++++++||++.+|++
T Consensus 133 ~~kk~~~~--~~~~~i~~~l~~~~k~~~~iRvi~hT------q~~~~~l~qkk~~l~E~~v~g~~~~~k~~~A~~~lg~~ 204 (403)
T 2zkr_b 133 YCKKWQDA--DGKKQLERDFSSMKKYCQVIRVIAHT------QMRLLPLRQKKAHLMEVQVNGGTVAEKLDWARERLEQQ 204 (403)
T ss_dssp CCCCCCCH--HHHHHHHHHHHHHSCCCSSCEEEEEC------CGGGSSCSCCCCCCEEEEBCSSSHHHHHHHHHHHHHSC
T ss_pred cccccccc--hhhhhHHHHHHHhhccceEEEEEEEe------cccccccccCCCEEEEEEecCcchhhhhhhhhccCCcE
Confidence 33444444 47788999999999999999999999 99999999999999999999999999999999999999
Q ss_pred eeccccccCCCeEEEEEEecccccccceeeccccC
Q psy16477 84 IPVGQVFAQDEMIDCIGVTKGKGFKGFVNSSLLFR 118 (172)
Q Consensus 84 I~v~dvF~~Ge~VDViGvTKGKGFqGvvKR~~F~r 118 (172)
|+|+|+|++||+|||+|+|||||||||||||||.+
T Consensus 205 i~v~~vF~~ge~VDV~gvTKGKGfqGvvkRwg~~~ 239 (403)
T 2zkr_b 205 VPVSQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKK 239 (403)
T ss_dssp BCSTTTCCSSCCCCEEEECCEEEEECHHHHHCCCC
T ss_pred EchhhhccCCceEEEEEeecCCcceeceeecCcCC
Confidence 99988999999999999999999999999999754
No 5
>3j21_C 50S ribosomal protein L3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=5.8e-37 Score=272.14 Aligned_cols=128 Identities=29% Similarity=0.379 Sum_probs=115.0
Q ss_pred hhhhhccccccccc--ceeEEEEEeeecccccccchhhhhccCcceEEEEecCCCChhhhhHHHhhhCCCeeeccccccC
Q psy16477 15 MEIQLNGGSVADRQ--HITVCLKLAHTEDLYGAHMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQ 92 (172)
Q Consensus 15 ~~~~~~~~~~~~k~--~~~virvi~hT~~~~g~q~~~lgl~qKK~~l~Eirv~gg~~~~k~e~a~~~lGk~I~v~dvF~~ 92 (172)
..++++++|++|++ ||++||||+|| ||.+++| ||||||||||||||++++++|||++.+|++|+++|+|++
T Consensus 143 ~~~~~~~~~~~~~k~~~~~~iRvi~hT------qp~~~~l-qKK~~imEiqV~Ggsv~~k~~~a~~~lG~~i~v~~vF~~ 215 (365)
T 3j21_C 143 MFEQKLGQLEDMIKEGEIVDVRAIVAT------QPWVIKL-KKKPEVMEYAIGGTSVEEKFNYIKEKLGKELRVGEVLKE 215 (365)
T ss_dssp HHHHHHHHHHHHHTCTTEEEEEEEEEE------CCSSCSS-CCSCCEEEEEEECSSHHHHHHHHHHHTTCBCCHHHHCCT
T ss_pred chhhHHHHHHHhhccCcceEEEEEEec------ccccccc-ccCccEEEEEecCCCHHHHHHHHHhhcCcEEechhccCC
Confidence 44678899999998 99999999999 9998899 999999999999999999999999999999999889999
Q ss_pred CCeEEEEEEecccccccceeeccccCcc-cccccccccccC-cCCCChh------hhhcccccchhh
Q psy16477 93 DEMIDCIGVTKGKGFKGFVNSSLLFRDS-KITSIISAKFGH-GRFQTPA------DKLAFMGYLKKD 151 (172)
Q Consensus 93 Ge~VDViGvTKGKGFqGvvKR~~F~r~~-~~~~~tssk~Gh-G~fqT~~------ek~~f~G~~kk~ 151 (172)
||+|||+|+|||||||||||||||.+.. ++++ ..++.|. |.+ +|. ...++||+++..
T Consensus 216 ge~VDV~GvTKGKGFqGvvKRwgf~~~p~~hg~-~hR~~GsiG~~-~P~rV~~g~~maGqmG~~~rT 280 (365)
T 3j21_C 216 GELLDVIAVTKGKGTQGPVKRWGIKLRAHKDSK-GRRKVGSIGPW-HPARVMWTVPMAGQMGFHHRT 280 (365)
T ss_dssp TCEEEEEEECCCCEEECHHHHHCCCCCSSCCSS-CSSCCCCSCCS-SSCSCCSSSCCCEEESSCEEE
T ss_pred CCEEEEEEEeeccccccceeeccCCCCCCCCCC-CCCCCcccCCC-CCCcccCCCccCCccCcceeE
Confidence 9999999999999999999999999986 4443 3677777 875 776 778899988753
No 6
>1vq8_B 50S ribosomal protein L3P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.43.3.2 PDB: 1vq4_B* 1vq5_B* 1vq6_B* 1vq7_B* 1s72_B* 1vq9_B* 1vqk_B* 1vql_B* 1vqm_B* 1vqn_B* 1vqo_B* 1vqp_B* 1yhq_B* 1yi2_B* 1yij_B* 1yit_B* 1yj9_B* 1yjn_B* 1yjw_B* 2otj_B* ...
Probab=99.97 E-value=1.1e-31 Score=236.66 Aligned_cols=123 Identities=24% Similarity=0.357 Sum_probs=106.7
Q ss_pred cccccccc--ceeEEEEEeeecccccccchhh-hhccCcceEEEEecCCCChhhhhHHHhhhC--CCeeeccccccCCCe
Q psy16477 21 GGSVADRQ--HITVCLKLAHTEDLYGAHMKLL-KKRQKKAHLMEIQLNGGSVADKIAWARQHL--EQPIPVGQVFAQDEM 95 (172)
Q Consensus 21 ~~~~~~k~--~~~virvi~hT~~~~g~q~~~l-gl~qKK~~l~Eirv~gg~~~~k~e~a~~~l--Gk~I~v~dvF~~Ge~ 95 (172)
..+.++.+ +|++||+|+|| ||.++ |+++|++||+||+|++++++++++||.++| |++|+++|+|++||+
T Consensus 127 ~~~~~~~~~~~~~~ir~i~~t------qp~k~agv~~kk~~l~E~rv~~~~~~~k~~~a~~~l~~G~~i~v~~vF~~Gq~ 200 (338)
T 1vq8_B 127 EQIRDAHEAGDLGDLRLITHT------VPDAVPSVPKKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAGEY 200 (338)
T ss_dssp HHHHHHHHHTCEEEEEEEEEC------CGGGCTTSCCCSCCEEEEEEECSCHHHHHHHHHHHHHHTCEECSTTTCCTTCE
T ss_pred HHHHhhhcccceeEEEEEEEe------ccccccCCCccCCEEEEEEecCcchhhhhhhhhhccCCCcEEchhhcccCCCc
Confidence 34444444 99999999999 99995 999999999999999999999999999999 999999889999999
Q ss_pred EEEEEEecccccccceeeccccCcc-ccc-ccccccccC-cCCCChh------hhhcccccchh
Q psy16477 96 IDCIGVTKGKGFKGFVNSSLLFRDS-KIT-SIISAKFGH-GRFQTPA------DKLAFMGYLKK 150 (172)
Q Consensus 96 VDViGvTKGKGFqGvvKR~~F~r~~-~~~-~~tssk~Gh-G~fqT~~------ek~~f~G~~kk 150 (172)
|||+|+|||||||||||||||.+.. +++ +...++.|. |++ +|. .-.++||+++.
T Consensus 201 VDV~gvTKGKGFqGv~KRwgf~~~p~sHG~sk~hR~~GsiG~~-~P~RV~~g~kmaGqmG~~~r 263 (338)
T 1vq8_B 201 ADVAGVTKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPW-NPSRVRSTVPQQGQTGYHQR 263 (338)
T ss_dssp EEEEEECCCCCEECHHHHHCCCCCCGGGGSSSCSSCCSCSCCS-SSSSCCTTSCCCEECSCCEE
T ss_pred eeeEEEEeCCCceeeeeecCCCCCCcccCCCccCCCCcccCCC-CCCeeccCCcCCCCcCCceE
Confidence 9999999999999999999999986 455 445678888 874 665 55789998876
No 7
>3bbo_F Ribosomal protein L3; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=99.88 E-value=4.1e-24 Score=182.99 Aligned_cols=113 Identities=25% Similarity=0.359 Sum_probs=75.3
Q ss_pred ceeEEEEEeeecccccccchhhhhc--------------------cCcceEEEEecCCCChhhhhHHHhhhCCCeeeccc
Q psy16477 29 HITVCLKLAHTEDLYGAHMKLLKKR--------------------QKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVGQ 88 (172)
Q Consensus 29 ~~~virvi~hT~~~~g~q~~~lgl~--------------------qKK~~l~Eirv~gg~~~~k~e~a~~~lGk~I~v~d 88 (172)
.|.|| +-.+|.+.+||...+++.. ++++||+||+++. .+ +| .+|++|++++
T Consensus 73 p~~Vv-~q~kt~e~dGy~Avqvg~~~~k~k~~tKp~~Ghf~kagv~~kr~l~Efrv~~--~~---~~---~~G~~i~v~~ 143 (259)
T 3bbo_F 73 EGNIV-TQIKTEATDGYNAVQVGYRRVRDRKLTKPEMGHLEKSGIIPLRHLQEFRLQS--ID---GF---EVTQKLDFGE 143 (259)
T ss_dssp ---------------------------CCSSCCHHHHTTCSSCCCCCSSCCCCCCSCC--CC---TT---TTCCCCSSCS
T ss_pred CCEEE-EEEeecCCCCcEEEEEEEeeechhhCChhhhhhHHHcCCCCCcEEEEEecCC--hh---hc---ccccEeehhh
Confidence 46664 3457888899987776431 4578999999974 23 35 7999999976
Q ss_pred cccCCCeEEEEEEecccccccceeeccccCcc-cccccccccccC-cCCCChh------hhhcccccchh
Q psy16477 89 VFAQDEMIDCIGVTKGKGFKGFVNSSLLFRDS-KITSIISAKFGH-GRFQTPA------DKLAFMGYLKK 150 (172)
Q Consensus 89 vF~~Ge~VDViGvTKGKGFqGvvKR~~F~r~~-~~~~~tssk~Gh-G~fqT~~------ek~~f~G~~kk 150 (172)
||++||+|||+|+|||||||||||||||.++. ++++-..++.|. |.+|+|. .-.+.||..+.
T Consensus 144 vF~~Gq~VDV~G~TKGKGFqGv~KRwgf~g~p~sHGsk~hR~~GSiG~~~~PgRV~kGkkMaGqmG~~~~ 213 (259)
T 3bbo_F 144 LFKEGDLVDVSGTTIGKGFQGGIKRHNFKRGQMTHGSKSHRQLGSIGAGTTPGRVYKGKKMPGRMGGTKR 213 (259)
T ss_dssp SSCSSSCCCCCCBCCCCSSCCSSSSSCCCCCCSSSCSSTTTSCCCCSCSSCCTTTTTTSCCCCCCCCCBC
T ss_pred eecCCCEEEEEEEecCCcceeeeeecCcCCCCCcCCCCCCCCCcccCCCCCCCcCcCCCccCCCCCCceE
Confidence 79999999999999999999999999999986 565546788888 9999987 44788998875
No 8
>2zjr_B 50S ribosomal protein L3; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.43.3.2 PDB: 1nwx_B* 1nwy_B* 1sm1_B* 1xbp_B* 2ogm_B* 2ogn_B* 2ogo_B* 2zjp_B* 2zjq_B 1nkw_B 3cf5_B* 3dll_B* 3pio_B* 3pip_B* 1pnu_B 1pny_B 1vor_E 1vou_E 1vow_E 1voy_E ...
Probab=99.86 E-value=1.3e-22 Score=169.23 Aligned_cols=107 Identities=21% Similarity=0.234 Sum_probs=83.8
Q ss_pred cceeEEEEEeeecccccccchh---------------------hhhccCcceEEEEecCCCChhhhhHHHhhhCCCeeec
Q psy16477 28 QHITVCLKLAHTEDLYGAHMKL---------------------LKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPV 86 (172)
Q Consensus 28 ~~~~virvi~hT~~~~g~q~~~---------------------lgl~qKK~~l~Eirv~gg~~~~k~e~a~~~lGk~I~v 86 (172)
..|.|+.+..+..| ||...+ .+++ +++||+||++++ .+|++|++
T Consensus 29 ~p~~V~~~kt~~~d--gy~avqvg~~~~~~~~~tkp~~g~~~kagv~-~k~~l~Efrv~~------------~~G~~i~v 93 (211)
T 2zjr_B 29 GPCPIVQRKTAQTD--GYEAVQIGYAPKAERKVNKPMQGHFAKAGVA-PTRILREFRGFA------------PDGDSVNV 93 (211)
T ss_dssp CCEEEEEEECTTTT--SSCEEEEECSCCCGGGCCHHHHHHHHTTTCC-CCSCEEEETTCC------------CSSEECST
T ss_pred CCcEEEEEeceecC--CCcEEEEEEEEecccccChhhhhhHHHcCCC-CCcEEEEEEcCC------------cCCCEeEh
Confidence 45777777766544 443222 2455 579999999875 59999999
Q ss_pred cccccCCCeEEEEEEecccccccceeeccccCcc-ccc-ccccccccC-cCCCChh------hhhcccccchh
Q psy16477 87 GQVFAQDEMIDCIGVTKGKGFKGFVNSSLLFRDS-KIT-SIISAKFGH-GRFQTPA------DKLAFMGYLKK 150 (172)
Q Consensus 87 ~dvF~~Ge~VDViGvTKGKGFqGvvKR~~F~r~~-~~~-~~tssk~Gh-G~fqT~~------ek~~f~G~~kk 150 (172)
|+|++||+|||+|+|||||||||||||||.+++ +++ +...++.|. |.-|+|. .-.+.||..+.
T Consensus 94 -~~F~~G~~VDV~g~tKGKGFqGv~KR~gf~~~p~sHG~s~~hR~~GsiG~~~~PgRV~kgkkmaG~mG~~~~ 165 (211)
T 2zjr_B 94 -DIFAEGEKIDATGTSKGKGTQGVMKRWNFAGGPASHGSKKWHRRPGSIGQRKTPGRVYKGKRMAGHMGMERV 165 (211)
T ss_dssp -TTSCTTCEEEEEEECCEEEEECHHHHHCCCCCCSSSSCSSCSCSCCCCCCSSTTCSCCTTCCCCEEEECCEE
T ss_pred -hhhcCCCceEEEEEEcCCcceeceeecCCCCCCcccCCCCCCCCCcccCCCCCCCcCcCCCccCCCCCCccE
Confidence 799999999999999999999999999999986 565 445678888 8767876 44778888765
No 9
>2ftc_C L3MT, MRP-L3, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=99.85 E-value=6.8e-22 Score=165.13 Aligned_cols=111 Identities=14% Similarity=0.118 Sum_probs=86.5
Q ss_pred cceeEEEEEeeecc--cccccchhhhhccC--------------------cceEEEEecCCCChhhhhHHHhhhCCCeee
Q psy16477 28 QHITVCLKLAHTED--LYGAHMKLLKKRQK--------------------KAHLMEIQLNGGSVADKIAWARQHLEQPIP 85 (172)
Q Consensus 28 ~~~~virvi~hT~~--~~g~q~~~lgl~qK--------------------K~~l~Eirv~gg~~~~k~e~a~~~lGk~I~ 85 (172)
..|.|+++. |++ .+||...++|...+ +++|+||++++.+ +| .+|++|+
T Consensus 30 ~~~~V~q~k--t~e~~~dGY~Avqvg~~~~~~~~~~kp~~Ghf~kagv~pkr~l~Efrv~~~~-----~~---~~G~~l~ 99 (211)
T 2ftc_C 30 QDCHVLKYT--SKENCNGKMATLSVGGKTVSRFRKATSILEFYRELGLPPKQTVKIFNITDNA-----AI---KPGTPLY 99 (211)
T ss_pred cCCEEEEEE--ccccCCCCEEEEEEeeeecccccCChhHhhhHHHcCCCcccEEEEEEeCCCC-----cc---ccCCEEE
Confidence 467777774 444 68887666654222 4689999997631 34 6999999
Q ss_pred ccccccCCCeEEEEEEecccccccceeeccccCcc-ccc-ccccccccC-cCCCChh------hhhcccccchh
Q psy16477 86 VGQVFAQDEMIDCIGVTKGKGFKGFVNSSLLFRDS-KIT-SIISAKFGH-GRFQTPA------DKLAFMGYLKK 150 (172)
Q Consensus 86 v~dvF~~Ge~VDViGvTKGKGFqGvvKR~~F~r~~-~~~-~~tssk~Gh-G~fqT~~------ek~~f~G~~kk 150 (172)
+ |+|++||+|||+|+|||||||||||||||.+++ +++ +...++.|. |.+ +|. .-.+.||..+.
T Consensus 100 v-~~F~~Gq~VDV~g~sKGKGFqGv~KR~gf~~~p~sHG~s~~hR~~GSiG~~-~PgRV~kgkkmaG~mG~~~~ 171 (211)
T 2ftc_C 100 A-AHFRPGQYVDVTAKTIGKGFQGVMKRWGFKGQPATHGQTKTHRRPGAVATG-DIGRVWPGTKMPGKMGNIYR 171 (211)
T ss_pred h-HhccCCceEEEEEEEcCCcceeceeecCCCCCCcccCCCCCCCCCcccCCC-CCCeecCCcccCCCCCCeeE
Confidence 9 699999999999999999999999999999986 566 445677888 877 776 44788888765
No 10
>3r8s_D 50S ribosomal protein L3; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_B 1p86_B 1vs8_D 1vs6_D 2aw4_D 2awb_D 2gya_B 2gyc_B 1vt2_D 2i2v_D 2j28_D 2i2t_D* 2qao_D* 2qba_D* 2qbc_D* 2qbe_D 2qbg_D 2qbi_D* 2qbk_D* 2qov_D ...
Probab=99.85 E-value=3.8e-22 Score=166.51 Aligned_cols=112 Identities=26% Similarity=0.293 Sum_probs=87.9
Q ss_pred cceeEEEEEeeecccccccchhhhhccC--------------------cceEEEEecCCCChhhhhHHHhhhCCCeeecc
Q psy16477 28 QHITVCLKLAHTEDLYGAHMKLLKKRQK--------------------KAHLMEIQLNGGSVADKIAWARQHLEQPIPVG 87 (172)
Q Consensus 28 ~~~~virvi~hT~~~~g~q~~~lgl~qK--------------------K~~l~Eirv~gg~~~~k~e~a~~~lGk~I~v~ 87 (172)
+.|.|+++. |.+.+||...+||...+ +++|.||++... + +| .+|++|++
T Consensus 30 ~~~~V~q~k--t~e~dGY~Avqvg~g~~~~~~~~Kp~~Ghf~kagv~pkr~l~Efrv~~~--~---~~---~~G~~i~v- 98 (209)
T 3r8s_D 30 EANRVTQVK--DLANDGYRAIQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEG--E---EF---TVGQSISV- 98 (209)
T ss_dssp CCEEEEEEE--CHHHHSSCEEEEEESCCCGGGSCHHHHHHHHHHTCCCCSEEEEEECCTT--C---CC---CTTCEECG-
T ss_pred cCCEEEEEE--ccCCCCeEEEEEEEeecCcccCCHHHhhHHHHcCCCCCeEEEEEecCCc--c---cC---CCCCEEEe-
Confidence 467777764 66789998777655332 468999998652 1 34 69999999
Q ss_pred ccccCCCeEEEEEEecccccccceeeccccCcc-ccc-ccccccccC-cCCCChh------hhhcccccchh
Q psy16477 88 QVFAQDEMIDCIGVTKGKGFKGFVNSSLLFRDS-KIT-SIISAKFGH-GRFQTPA------DKLAFMGYLKK 150 (172)
Q Consensus 88 dvF~~Ge~VDViGvTKGKGFqGvvKR~~F~r~~-~~~-~~tssk~Gh-G~fqT~~------ek~~f~G~~kk 150 (172)
|+|++||+|||+|+|||||||||||||||.+.+ +++ +...++.|. |.-|+|. .-.+.||..+.
T Consensus 99 ~~F~~G~~VDV~g~sKGKGFqGv~KR~gf~~~p~sHG~s~~hR~~GsiG~~~~P~rV~kgkkmaG~mG~~~~ 170 (209)
T 3r8s_D 99 ELFADVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKKMAGQMGNERV 170 (209)
T ss_dssp GGGGSCCEEEEEEECCCCCEECHHHHHCCCCCCSSTTCCSCSSSCCCCCCBTTBCSCCTTCCCSEECSSSEE
T ss_pred eeEcCCCEEEEEEEEeccccceeeeEcCCCCCCcccCCCCCCCCCeeCCCCCCCCcCcCCCccCCCCCCccE
Confidence 799999999999999999999999999999986 566 345677777 7766776 56678888764
No 11
>3v2d_E 50S ribosomal protein L3; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_C 2hgj_E 2hgq_E 2hgu_E 1vsa_C 2j03_E 2jl6_E 2jl8_E 2v47_E 2v49_E 2wdi_E 2wdj_E 2wdl_E 2wdn_E 2wh2_E 2wh4_E 2wrj_E 2wrl_E 2wro_E 2wrr_E ...
Probab=99.85 E-value=6.4e-22 Score=164.83 Aligned_cols=108 Identities=21% Similarity=0.231 Sum_probs=86.8
Q ss_pred cceeEEEEEeeecccccccchhhhhccC--------------------cceEEEEecCCCChhhhhHHHhhhCCCeeecc
Q psy16477 28 QHITVCLKLAHTEDLYGAHMKLLKKRQK--------------------KAHLMEIQLNGGSVADKIAWARQHLEQPIPVG 87 (172)
Q Consensus 28 ~~~~virvi~hT~~~~g~q~~~lgl~qK--------------------K~~l~Eirv~gg~~~~k~e~a~~~lGk~I~v~ 87 (172)
+.|.|+++. |.+.+||...+||...+ +++|.||++.. .+|++|++
T Consensus 29 ~~~~V~q~k--t~e~dGY~Avqvg~~~~~~~~~~kp~~Ghf~kagv~pkr~l~Efrv~~------------~~G~~i~v- 93 (206)
T 3v2d_E 29 GPCPVVQRR--TPEKDGYTAVQLGFLPQNPKRVNRPLKGHFAKAGVEPVRILREIRDFN------------PEGDTVTV- 93 (206)
T ss_dssp CCEEEEEEE--CHHHHSSCEEEEEEEECCGGGCCHHHHHHHHTTCCCCEEEEEEEETCC------------CSSSEECG-
T ss_pred cCCEEEEEE--ccCcCCeEEEEEEeccCCccCCCHHHhhhHHHcCCCcCeEEEEEECCC------------CCCCEEEe-
Confidence 568888765 56688998777665432 37899999753 59999999
Q ss_pred ccccCCCeEEEEEEecccccccceeeccccCcc-ccc-ccccccccC-cCCCChh------hhhcccccchh
Q psy16477 88 QVFAQDEMIDCIGVTKGKGFKGFVNSSLLFRDS-KIT-SIISAKFGH-GRFQTPA------DKLAFMGYLKK 150 (172)
Q Consensus 88 dvF~~Ge~VDViGvTKGKGFqGvvKR~~F~r~~-~~~-~~tssk~Gh-G~fqT~~------ek~~f~G~~kk 150 (172)
|+|++||+|||+|+|||||||||||||||.+.+ +++ +...++.|. |.-|+|. .-.+.||..+.
T Consensus 94 ~~F~~G~~VDV~g~sKGKGFqGv~KR~gf~~~p~tHG~s~~hR~~GsiG~~~~P~rV~kgkkmaG~mG~~~~ 165 (206)
T 3v2d_E 94 EIFKPGERVDVTGTSKGRGFAGVMKRWNFAGGPDSHGAHKIHRHPGSIGNRKTPGRVYKGKKMAGHYGAERV 165 (206)
T ss_dssp GGCCTTCEEEEEEECCCCCEECHHHHSCCCCCCSSTTCCSCTTCCCCCCCBTTBCSCCTTCCCCEECSSSEE
T ss_pred eeecCCCEEEEEEEEeccccceeeeEcccCCCCcccCCCCCCCCCeeCCCCCCCCcCcCCCccCCCCCCccE
Confidence 799999999999999999999999999999986 566 556777887 7766776 56778888764
Done!