RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16477
         (172 letters)



>d1vqob1 b.43.3.2 (B:1-337) Ribosomal protein L3 {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 337

 Score = 48.1 bits (114), Expect = 9e-08
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 2/66 (3%)

Query: 48  KLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQP--IPVGQVFAQDEMIDCIGVTKGK 105
            +    +KK  +ME ++ GGSV+D++  A   +E      +  +F   E  D  GVTKGK
Sbjct: 150 AVPSVPKKKPDVMETRVGGGSVSDRLDHALDIVEDGGEHAMNDIFRAGEYADVAGVTKGK 209

Query: 106 GFKGFV 111
           G +G V
Sbjct: 210 GTQGPV 215


>d2gycb1 b.43.3.2 (B:1-209) Ribosomal protein L3 {Escherichia coli
           [TaxId: 562]}
          Length = 209

 Score = 31.2 bits (70), Expect = 0.040
 Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 1/68 (1%)

Query: 45  AHMKLLKKRQKK-AHLMEIQLNGGSVADKIAWARQHLEQPIPVGQVFAQDEMIDCIGVTK 103
                + K +        ++   G    ++A   +         ++FA  + +D  G +K
Sbjct: 55  KKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEFTVGQSISVELFADVKKVDVTGTSK 114

Query: 104 GKGFKGFV 111
           GKGF G V
Sbjct: 115 GKGFAGTV 122


>d2j01e1 b.43.3.2 (E:1-205) Ribosomal protein L3 {Thermus
           thermophilus [TaxId: 274]}
          Length = 205

 Score = 30.8 bits (69), Expect = 0.050
 Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 5/86 (5%)

Query: 31  TVCLKLAHTEDLYGAHM-----KLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIP 85
            V  +    +D Y A       +  K+  +       +     V         + E    
Sbjct: 32  PVVQRRTPEKDGYTAVQLGFLPQNPKRVNRPLKGHFAKAGVEPVRILREIRDFNPEGDTV 91

Query: 86  VGQVFAQDEMIDCIGVTKGKGFKGFV 111
             ++F   E +D  G +KG+GF G +
Sbjct: 92  TVEIFKPGERVDVTGTSKGRGFAGVM 117


>d2zjrb1 b.43.3.2 (B:1-205) Ribosomal protein L3 {Deinococcus
           radiodurans [TaxId: 1299]}
          Length = 205

 Score = 25.4 bits (55), Expect = 3.8
 Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 1/84 (1%)

Query: 28  QHITVCLKLAHTEDLYGAHMKLLKKRQKKAHLMEIQLNGGSVADKIAWARQHLEQPIPVG 87
           Q  T      +     G   K  +K  K       +           +     +      
Sbjct: 35  QRKTAQ-TDGYEAVQIGYAPKAERKVNKPMQGHFAKAGVAPTRILREFRGFAPDGDSVNV 93

Query: 88  QVFAQDEMIDCIGVTKGKGFKGFV 111
            +FA+ E ID  G +KGKG +G +
Sbjct: 94  DIFAEGEKIDATGTSKGKGTQGVM 117


>d1o98a1 c.105.1.1 (A:77-310) 2,3-Bisphosphoglycerate-independent
          phosphoglycerate mutase, substrate-binding domain
          {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 234

 Score = 24.3 bits (52), Expect = 9.7
 Identities = 10/43 (23%), Positives = 20/43 (46%)

Query: 5  LKKRQKKAHLMEIQLNGGSVADRQHITVCLKLAHTEDLYGAHM 47
          +K+     HL  +  +GG  +   H+   L+LA  E +   ++
Sbjct: 28 VKQHGTSLHLFGLLSDGGVHSHIHHLYALLRLAAKEGVKRVYI 70


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.132    0.374 

Gapped
Lambda     K      H
   0.267   0.0552    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 602,417
Number of extensions: 26033
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 7
Length of query: 172
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 93
Effective length of database: 1,322,926
Effective search space: 123032118
Effective search space used: 123032118
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.4 bits)