BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16481
(175 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AMY|A Chain A, X-Ray Structure Of Human Phosphomannomutase 2 (Pmm2)
pdb|2Q4R|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Human Phosphomannomutase 2 (Pmm2)
Length = 246
Score = 140 bits (354), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 70/124 (56%), Positives = 90/124 (72%), Gaps = 2/124 (1%)
Query: 7 TICLFDVDGTLTQPRQKAQNETLDFLLKKLKPLSHLAIVSGSDMNKVAEQLGGEKVLEQF 66
+CLFDVDGTLT PRQK E DFL +KL+ + +V GSD KV EQLG + V+E++
Sbjct: 7 ALCLFDVDGTLTAPRQKITKEXDDFL-QKLRQKIKIGVVGGSDFEKVQEQLGND-VVEKY 64
Query: 67 DFVFPENGLVAYKNGKLFEKKSIIDHMGEDKIQTFINYCLQHLSTVTLPFKRGNFIEFRT 126
D+VFPENGLVAYK+GKL +++I H+GE IQ INYCL +++ + LP KRG FIEFR
Sbjct: 65 DYVFPENGLVAYKDGKLLCRQNIQSHLGEALIQDLINYCLSYIAKIKLPKKRGTFIEFRN 124
Query: 127 GLIN 130
G +N
Sbjct: 125 GXLN 128
>pdb|2FUC|A Chain A, Human Alpha-Phosphomannomutase 1 With Mg2+ Cofactor Bound
pdb|2FUE|A Chain A, Human Alpha-Phosphomannomutase 1 With D-Mannose
1-Phosphate And Mg2+ Cofactor Bound
Length = 262
Score = 132 bits (332), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 65/128 (50%), Positives = 90/128 (70%), Gaps = 2/128 (1%)
Query: 4 RANTICLFDVDGTLTQPRQKAQNETLDFLLKKLKPLSHLAIVSGSDMNKVAEQLG-GEKV 62
+ +CLFDVDGTLT RQK E FL +KL+ + +V GSD K+AEQLG G++V
Sbjct: 11 KERVLCLFDVDGTLTPARQKIDPEVAAFL-QKLRSRVQIGVVGGSDYCKIAEQLGDGDEV 69
Query: 63 LEQFDFVFPENGLVAYKNGKLFEKKSIIDHMGEDKIQTFINYCLQHLSTVTLPFKRGNFI 122
+E+FD+VF ENG V YK+G+L K++I +H+GE+ +Q IN+CL + + + LP KRG FI
Sbjct: 70 IEKFDYVFAENGTVQYKHGRLLSKQTIQNHLGEELLQDLINFCLSYXALLRLPKKRGTFI 129
Query: 123 EFRTGLIN 130
EFR G +N
Sbjct: 130 EFRNGXLN 137
>pdb|2I54|A Chain A, Phosphomannomutase From Leishmania Mexicana
pdb|2I54|B Chain B, Phosphomannomutase From Leishmania Mexicana
pdb|2I54|C Chain C, Phosphomannomutase From Leishmania Mexicana
pdb|2I55|A Chain A, Complex Of Glucose-1,6-Bisphosphate With
Phosphomannomutase From Leishmania Mexicana
pdb|2I55|B Chain B, Complex Of Glucose-1,6-Bisphosphate With
Phosphomannomutase From Leishmania Mexicana
pdb|2I55|C Chain C, Complex Of Glucose-1,6-Bisphosphate With
Phosphomannomutase From Leishmania Mexicana
Length = 247
Score = 116 bits (291), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 80/126 (63%), Gaps = 1/126 (0%)
Query: 5 ANTICLFDVDGTLTQPRQKAQNETLDFLLKKLKPLSHLAIVSGSDMNKVAEQLGGEKVLE 64
+ I LFDVDGTLT PR ++ + LLK L +V GSD K EQLG E +LE
Sbjct: 3 SKAILLFDVDGTLTPPRNPETHDMKEALLKARAAGFKLGVVGGSDFAKQKEQLG-ESILE 61
Query: 65 QFDFVFPENGLVAYKNGKLFEKKSIIDHMGEDKIQTFINYCLQHLSTVTLPFKRGNFIEF 124
FD+VF ENGL+AYK+GK F + S++ +G +K+ F+ CL ++ + +P +RG F+EF
Sbjct: 62 DFDYVFSENGLLAYKDGKEFHRNSLLRALGNEKVVAFVKKCLHLIADLDIPVQRGTFVEF 121
Query: 125 RTGLIN 130
R G+ N
Sbjct: 122 RNGMFN 127
>pdb|3F9R|A Chain A, Crystal Structure Of Trypanosoma Brucei
Phosphomannosemutase, Tb.10.700.370
pdb|3F9R|B Chain B, Crystal Structure Of Trypanosoma Brucei
Phosphomannosemutase, Tb.10.700.370
Length = 246
Score = 102 bits (255), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 80/125 (64%), Gaps = 3/125 (2%)
Query: 7 TICLFDVDGTLTQPRQKAQNETLDFLLKKLKPLSH-LAIVSGSDMNKVAEQLGGEKVLEQ 65
+ LFDVDGTLT PR Q + + L+K+ + + V GSD K EQLG VL Q
Sbjct: 5 VLLLFDVDGTLTPPRL-CQTDEMRALIKRARGAGFCVGTVGGSDFAKQVEQLG-RDVLTQ 62
Query: 66 FDFVFPENGLVAYKNGKLFEKKSIIDHMGEDKIQTFINYCLQHLSTVTLPFKRGNFIEFR 125
FD+VF ENGL+AY+NG ++S+++ +G D+I F+ L+ ++ + +P +RG F+E+R
Sbjct: 63 FDYVFAENGLLAYRNGLEIHRQSLLNALGNDRIVKFVKKTLRLIADLDIPVQRGTFVEYR 122
Query: 126 TGLIN 130
G+IN
Sbjct: 123 NGMIN 127
>pdb|1YVE|I Chain I, Acetohydroxy Acid Isomeroreductase Complexed With Nadph,
Magnesium And Inhibitor Ipoha (N-Hydroxy-N-
Isopropyloxamate)
pdb|1YVE|J Chain J, Acetohydroxy Acid Isomeroreductase Complexed With Nadph,
Magnesium And Inhibitor Ipoha (N-Hydroxy-N-
Isopropyloxamate)
pdb|1YVE|K Chain K, Acetohydroxy Acid Isomeroreductase Complexed With Nadph,
Magnesium And Inhibitor Ipoha (N-Hydroxy-N-
Isopropyloxamate)
pdb|1YVE|L Chain L, Acetohydroxy Acid Isomeroreductase Complexed With Nadph,
Magnesium And Inhibitor Ipoha (N-Hydroxy-N-
Isopropyloxamate)
pdb|1QMG|A Chain A, Acetohydroxyacid Isomeroreductase Complexed With Its
Reaction Product Dihydroxy-methylvalerate, Manganese And
Adp-ribose.
pdb|1QMG|B Chain B, Acetohydroxyacid Isomeroreductase Complexed With Its
Reaction Product Dihydroxy-methylvalerate, Manganese And
Adp-ribose.
pdb|1QMG|C Chain C, Acetohydroxyacid Isomeroreductase Complexed With Its
Reaction Product Dihydroxy-methylvalerate, Manganese And
Adp-ribose.
pdb|1QMG|D Chain D, Acetohydroxyacid Isomeroreductase Complexed With Its
Reaction Product Dihydroxy-methylvalerate, Manganese And
Adp-ribose
Length = 524
Score = 33.5 bits (75), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 2/90 (2%)
Query: 26 NETLDFLLKKLKPLSHLAIVS-GSDMNKVAEQLGGEKVLEQFDFVFPENGLVAYKNGKLF 84
NE++ + L P H VS D +LG K +FD++ + LVA NG
Sbjct: 420 NESVIEAVDSLNPFMHARGVSFMVDNCSTTARLGSRKWAPRFDYILSQQALVAVDNGAPI 479
Query: 85 EKKSIIDHMGEDKIQTFINYCLQHLSTVTL 114
+ +I + D + I C Q +V +
Sbjct: 480 -NQDLISNFLSDPVHEAIGVCAQLRPSVDI 508
>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure
pdb|2P1N|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1N|E Chain E, Mechanism Of Auxin Perception By The Tir1 Ubiqutin Ligase
pdb|2P1O|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1P|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|2P1Q|B Chain B, Mechanism Of Auxin Perception By The Tir1 Ubiquitin Ligase
pdb|3C6N|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
pdb|3C6O|B Chain B, Small Molecule Agonists And Antagonists Of F-Box
Protein-Substrate Interactions In Auxin Perception And
Signaling
pdb|3C6P|B Chain B, Small Molecule Agonists And Antagonists Of F-Box Protein-
Substrate Interactions In Auxin Perception And Signaling
Length = 594
Score = 29.3 bits (64), Expect = 1.3, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 69 VFPENGLVAYKNGKLFEKKSIIDHMGEDKIQTFINYCLQ--HLSTVTLPFKRGNFIEFRT 126
VFP V N L E+ + MG K+++ + +C Q + + +T+ R N FR
Sbjct: 345 VFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRL 404
Query: 127 GLI 129
+I
Sbjct: 405 CII 407
>pdb|3GNO|A Chain A, Crystal Structure Of A Rice Os3bglu6 Beta-glucosidase
pdb|3GNP|A Chain A, Crystal Structure Of A Rice Os3bglu6 Beta-Glucosidase With
Octyl-Beta- D-Thio-Glucoside
pdb|3GNR|A Chain A, Crystal Structure Of A Rice Os3bglu6 Beta-glucosidase With
Covalently Bound 2-deoxy-2-fluoroglucoside To The
Catalytic Nucleophile E396
Length = 488
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 92 HMGEDKIQTFINYCLQHLSTVTLPFKRGNFIEFRTGLINSIIDHMGEDKIQTFINYCLQH 151
H + I T +N L TV+LPFK G I R NSI ++ +++ +NY +
Sbjct: 328 HNNTNIIGTLLNNTLADTGTVSLPFKNGKPIGDRA---NSIWLYIVPRGMRSLMNYVKER 384
Query: 152 LST 154
++
Sbjct: 385 YNS 387
>pdb|3SD7|A Chain A, 1.7 Angstrom Resolution Crystal Structure Of Putative
Phosphatase From Clostridium Difficile
Length = 240
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 10/15 (66%), Positives = 13/15 (86%)
Query: 8 ICLFDVDGTLTQPRQ 22
I LFD+DGTLT P++
Sbjct: 31 IVLFDLDGTLTDPKE 45
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 57 LGGEKVLEQFDFVFPENGLVAYKNGKL-FEKKSIIDHMGEDKIQTFINYCLQHLSTVTLP 115
+ GE+ + D + ENGL+ Y NG+L F+ K M ++I+ + C V +P
Sbjct: 373 IDGERAYKTGDAGYVENGLLFY-NGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVP 431
Query: 116 FKRGNFIEFRTGLI 129
K+G ++ ++
Sbjct: 432 IKKGEKYDYLLAVV 445
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 2/74 (2%)
Query: 57 LGGEKVLEQFDFVFPENGLVAYKNGKL-FEKKSIIDHMGEDKIQTFINYCLQHLSTVTLP 115
+ GE+ + D + ENGL+ Y NG+L F+ K M ++I+ + C V +P
Sbjct: 373 IDGERAYKTGDAGYVENGLLFY-NGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVP 431
Query: 116 FKRGNFIEFRTGLI 129
K+G ++ ++
Sbjct: 432 IKKGEKYDYLLAVV 445
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.141 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,121,070
Number of Sequences: 62578
Number of extensions: 205261
Number of successful extensions: 460
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 440
Number of HSP's gapped (non-prelim): 19
length of query: 175
length of database: 14,973,337
effective HSP length: 92
effective length of query: 83
effective length of database: 9,216,161
effective search space: 764941363
effective search space used: 764941363
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)