Query psy16481
Match_columns 175
No_of_seqs 200 out of 2068
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 22:24:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16481.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16481hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00174 phosphomannomutase; P 100.0 2.3E-27 4.9E-32 185.9 16.2 171 1-174 1-190 (247)
2 PRK10513 sugar phosphate phosp 99.9 8.9E-27 1.9E-31 184.2 14.4 165 5-174 2-198 (270)
3 PLN02423 phosphomannomutase 99.9 4.8E-26 1E-30 178.2 16.4 172 1-174 1-191 (245)
4 PRK15126 thiamin pyrimidine py 99.9 1.7E-26 3.7E-31 183.0 12.8 161 6-174 2-190 (272)
5 PRK10976 putative hydrolase; P 99.9 3.5E-26 7.5E-31 180.5 13.6 161 6-174 2-192 (266)
6 PRK10530 pyridoxal phosphate ( 99.9 8.2E-25 1.8E-29 172.8 14.3 102 5-114 2-106 (272)
7 COG0561 Cof Predicted hydrolas 99.9 1.8E-24 3.8E-29 170.7 14.1 162 5-174 2-191 (264)
8 PF08282 Hydrolase_3: haloacid 99.9 1.3E-24 2.7E-29 168.2 12.3 158 9-174 1-188 (254)
9 TIGR00099 Cof-subfamily Cof su 99.9 2.8E-24 6.2E-29 168.8 12.7 159 8-174 1-190 (256)
10 PLN02887 hydrolase family prot 99.9 1.2E-23 2.6E-28 181.0 13.6 165 5-174 307-509 (580)
11 KOG3189|consensus 99.9 1.9E-23 4.2E-28 154.6 12.7 168 5-174 10-195 (252)
12 PRK03669 mannosyl-3-phosphogly 99.9 1.7E-22 3.7E-27 160.2 13.1 100 2-108 3-110 (271)
13 PRK01158 phosphoglycolate phos 99.9 4.7E-21 1E-25 148.0 12.6 94 5-108 2-98 (230)
14 PRK10187 trehalose-6-phosphate 99.8 1.9E-19 4.2E-24 142.5 14.9 155 4-174 12-176 (266)
15 TIGR02463 MPGP_rel mannosyl-3- 99.8 5.9E-20 1.3E-24 141.3 11.5 94 8-108 1-102 (221)
16 PRK14502 bifunctional mannosyl 99.8 2.9E-19 6.4E-24 154.5 14.7 98 3-108 413-526 (694)
17 TIGR02461 osmo_MPG_phos mannos 99.8 1.8E-19 3.8E-24 139.5 11.8 91 8-107 1-107 (225)
18 TIGR01484 HAD-SF-IIB HAD-super 99.8 1E-18 2.3E-23 132.7 12.5 155 8-174 1-165 (204)
19 TIGR01487 SPP-like sucrose-pho 99.8 7.8E-19 1.7E-23 134.6 11.4 73 6-82 1-74 (215)
20 TIGR01486 HAD-SF-IIB-MPGP mann 99.8 2.8E-18 6.2E-23 134.9 12.0 92 8-107 1-100 (256)
21 TIGR01482 SPP-subfamily Sucros 99.8 2.8E-18 6E-23 132.0 10.2 77 9-89 1-80 (225)
22 TIGR01485 SPP_plant-cyano sucr 99.8 6.7E-18 1.5E-22 132.3 11.9 73 7-81 2-78 (249)
23 PRK00192 mannosyl-3-phosphogly 99.8 4.3E-18 9.4E-23 135.1 10.3 95 6-108 4-114 (273)
24 PF03332 PMM: Eukaryotic phosp 99.7 3.3E-17 7.1E-22 124.2 10.7 145 29-174 2-164 (220)
25 TIGR02471 sucr_syn_bact_C sucr 99.7 5.7E-17 1.2E-21 126.0 9.5 68 8-79 1-69 (236)
26 PLN02382 probable sucrose-phos 99.7 2.8E-16 6E-21 131.4 12.9 79 2-81 5-86 (413)
27 PRK12702 mannosyl-3-phosphogly 99.7 5.8E-17 1.2E-21 128.3 7.5 70 6-79 1-71 (302)
28 PRK14501 putative bifunctional 99.7 1.4E-15 3E-20 135.3 14.9 153 4-174 490-659 (726)
29 PLN03017 trehalose-phosphatase 99.6 1.4E-14 3.1E-19 118.3 14.7 70 4-79 109-183 (366)
30 PLN02205 alpha,alpha-trehalose 99.6 9.7E-15 2.1E-19 131.1 14.7 159 4-174 594-764 (854)
31 TIGR00685 T6PP trehalose-phosp 99.6 6E-14 1.3E-18 109.8 13.6 156 4-174 1-169 (244)
32 smart00775 LNS2 LNS2 domain. T 99.6 7.5E-15 1.6E-19 107.7 6.8 97 8-109 1-118 (157)
33 COG1877 OtsB Trehalose-6-phosp 99.5 1.1E-12 2.3E-17 103.4 14.3 153 5-174 17-184 (266)
34 PLN02151 trehalose-phosphatase 99.5 1.1E-12 2.4E-17 106.9 14.6 69 5-79 97-170 (354)
35 PF05116 S6PP: Sucrose-6F-phos 99.4 4.3E-13 9.3E-18 105.2 6.7 73 5-79 1-74 (247)
36 PLN03063 alpha,alpha-trehalose 99.4 9E-12 1.9E-16 111.8 15.7 158 4-174 505-680 (797)
37 PF02358 Trehalose_PPase: Treh 99.4 1.3E-12 2.8E-17 101.7 8.8 153 10-174 1-167 (235)
38 PLN02580 trehalose-phosphatase 99.4 8.1E-12 1.8E-16 103.0 13.9 68 5-78 118-190 (384)
39 PLN03064 alpha,alpha-trehalose 99.4 1.1E-11 2.5E-16 111.7 15.5 157 4-174 589-770 (934)
40 TIGR01689 EcbF-BcbF capsule bi 99.3 7.9E-12 1.7E-16 88.1 7.7 72 7-112 2-80 (126)
41 TIGR01684 viral_ppase viral ph 99.3 1.2E-11 2.5E-16 98.1 7.4 73 4-78 124-200 (301)
42 PHA03398 viral phosphatase sup 99.1 1.6E-10 3.6E-15 91.7 7.1 74 4-79 126-203 (303)
43 TIGR01457 HAD-SF-IIA-hyp2 HAD- 99.0 3.4E-10 7.4E-15 88.9 4.2 71 6-78 1-75 (249)
44 COG3769 Predicted hydrolase (H 98.8 8E-09 1.7E-13 78.5 6.2 70 5-78 6-76 (274)
45 PRK09484 3-deoxy-D-manno-octul 98.8 2.3E-09 5E-14 80.4 2.0 58 4-62 19-87 (183)
46 cd01427 HAD_like Haloacid deha 98.7 1.2E-08 2.6E-13 71.1 4.2 70 8-78 1-79 (139)
47 TIGR01458 HAD-SF-IIA-hyp3 HAD- 98.7 1.2E-08 2.5E-13 80.6 3.7 56 6-62 1-63 (257)
48 PLN02645 phosphoglycolate phos 98.6 4.3E-08 9.3E-13 79.4 5.0 57 5-63 27-87 (311)
49 TIGR01681 HAD-SF-IIIC HAD-supe 98.6 5.4E-08 1.2E-12 68.9 4.2 53 7-60 1-67 (128)
50 PRK10444 UMP phosphatase; Prov 98.6 2.9E-08 6.3E-13 78.0 2.8 55 6-62 1-59 (248)
51 TIGR01452 PGP_euk phosphoglyco 98.6 1E-07 2.2E-12 76.0 5.3 55 6-62 2-60 (279)
52 KOG1050|consensus 98.6 6.8E-07 1.5E-11 79.4 10.8 152 4-175 501-660 (732)
53 TIGR01670 YrbI-phosphatas 3-de 98.5 5.8E-08 1.3E-12 70.9 2.8 54 6-62 1-67 (154)
54 TIGR01662 HAD-SF-IIIA HAD-supe 98.3 4.4E-07 9.6E-12 64.1 3.0 55 7-62 1-72 (132)
55 TIGR01664 DNA-3'-Pase DNA 3'-p 98.3 1.6E-06 3.4E-11 64.1 5.7 45 5-50 12-69 (166)
56 TIGR02468 sucrsPsyn_pln sucros 98.3 1E-05 2.2E-10 74.3 11.6 65 9-79 775-845 (1050)
57 TIGR01460 HAD-SF-IIA Haloacid 98.1 3E-06 6.5E-11 66.0 3.4 52 9-62 1-57 (236)
58 PF13344 Hydrolase_6: Haloacid 98.1 5.2E-06 1.1E-10 56.4 3.9 52 9-62 1-56 (101)
59 TIGR01672 AphA HAD superfamily 98.0 1.8E-05 4E-10 61.7 6.2 55 8-63 65-158 (237)
60 TIGR01459 HAD-SF-IIA-hyp4 HAD- 97.9 2E-05 4.3E-10 61.5 5.3 66 4-71 6-75 (242)
61 TIGR01656 Histidinol-ppas hist 97.9 1.9E-05 4.1E-10 57.0 4.5 42 7-49 1-53 (147)
62 TIGR01668 YqeG_hyp_ppase HAD s 97.9 3.8E-05 8.2E-10 56.9 5.7 54 5-59 24-80 (170)
63 TIGR01685 MDP-1 magnesium-depe 97.8 4.9E-05 1.1E-09 56.6 6.2 56 6-62 2-85 (174)
64 TIGR02726 phenyl_P_delta pheny 97.8 1.7E-05 3.6E-10 58.9 3.4 58 4-62 5-73 (169)
65 PRK13222 phosphoglycolate phos 97.8 0.00011 2.3E-09 56.2 7.2 20 1-20 1-20 (226)
66 PRK13288 pyrophosphatase PpaX; 97.8 3.1E-05 6.7E-10 59.0 4.1 38 33-70 91-129 (214)
67 COG1778 Low specificity phosph 97.7 2.3E-05 4.9E-10 56.8 2.8 58 4-62 6-74 (170)
68 PHA02530 pseT polynucleotide k 97.7 4.5E-05 9.8E-10 61.1 4.3 56 5-61 157-225 (300)
69 PRK13225 phosphoglycolate phos 97.7 3.9E-05 8.4E-10 61.1 3.8 19 3-21 59-77 (273)
70 COG0647 NagD Predicted sugar p 97.6 9.2E-05 2E-09 58.8 5.0 56 2-59 4-63 (269)
71 COG0560 SerB Phosphoserine pho 97.6 0.00032 6.9E-09 53.9 7.9 80 24-111 78-159 (212)
72 PLN03243 haloacid dehalogenase 97.6 0.0001 2.3E-09 58.3 5.2 18 4-21 22-39 (260)
73 PRK14988 GMP/IMP nucleotidase; 97.6 0.00015 3.3E-09 56.0 5.5 17 4-20 8-24 (224)
74 TIGR00338 serB phosphoserine p 97.6 0.00014 3E-09 55.5 5.2 34 28-62 90-124 (219)
75 PRK06769 hypothetical protein; 97.5 6.5E-05 1.4E-09 55.8 2.8 47 3-50 1-55 (173)
76 COG2179 Predicted hydrolase of 97.5 0.00043 9.4E-09 50.8 6.6 57 5-62 27-85 (175)
77 PF08645 PNK3P: Polynucleotide 97.4 8.2E-05 1.8E-09 54.6 2.4 39 7-46 1-52 (159)
78 PRK08942 D,D-heptose 1,7-bisph 97.4 0.00018 3.8E-09 53.6 4.1 44 5-49 2-55 (181)
79 TIGR00213 GmhB_yaeD D,D-heptos 97.4 9.8E-05 2.1E-09 54.8 2.6 42 7-49 2-52 (176)
80 PLN02940 riboflavin kinase 97.4 0.00017 3.6E-09 60.2 4.2 39 33-71 102-142 (382)
81 PLN02954 phosphoserine phospha 97.4 0.00016 3.4E-09 55.4 3.5 33 29-62 90-123 (224)
82 PRK13582 thrH phosphoserine ph 97.4 0.00039 8.5E-09 52.4 5.6 33 29-62 74-106 (205)
83 TIGR01686 FkbH FkbH-like domai 97.4 0.00054 1.2E-08 55.8 6.7 54 5-59 2-67 (320)
84 smart00577 CPDc catalytic doma 97.4 0.00054 1.2E-08 49.5 5.9 55 6-61 2-82 (148)
85 PF08235 LNS2: LNS2 (Lipin/Ned 97.4 0.00027 5.8E-09 51.7 4.1 45 8-53 1-57 (157)
86 PF05152 DUF705: Protein of un 97.3 0.00093 2E-08 53.1 7.1 72 5-78 121-196 (297)
87 PRK10725 fructose-1-P/6-phosph 97.3 0.00011 2.3E-09 54.7 1.9 34 3-37 2-35 (188)
88 TIGR01663 PNK-3'Pase polynucle 97.3 0.00048 1.1E-08 59.6 6.0 45 5-50 167-224 (526)
89 PF09419 PGP_phosphatase: Mito 97.3 0.0005 1.1E-08 50.9 5.3 58 3-61 38-106 (168)
90 TIGR01428 HAD_type_II 2-haloal 97.3 0.00059 1.3E-08 51.2 5.5 16 6-21 1-16 (198)
91 PLN02575 haloacid dehalogenase 97.2 0.00035 7.6E-09 58.1 4.1 39 33-71 225-264 (381)
92 TIGR01261 hisB_Nterm histidino 97.2 0.00064 1.4E-08 50.0 5.0 41 7-48 2-54 (161)
93 PRK11009 aphA acid phosphatase 97.2 0.0014 3E-08 51.2 6.9 34 28-62 119-157 (237)
94 PTZ00445 p36-lilke protein; Pr 97.2 0.00043 9.3E-09 52.9 3.5 46 4-50 41-102 (219)
95 PRK10826 2-deoxyglucose-6-phos 97.1 0.00024 5.2E-09 54.4 1.9 36 1-37 2-37 (222)
96 PRK08238 hypothetical protein; 97.1 0.0013 2.8E-08 56.5 6.4 47 25-75 74-121 (479)
97 PRK11587 putative phosphatase; 97.1 0.00023 5E-09 54.5 1.6 32 5-37 2-33 (218)
98 TIGR01675 plant-AP plant acid 97.1 0.0013 2.8E-08 51.1 5.7 48 4-52 75-149 (229)
99 TIGR01489 DKMTPPase-SF 2,3-dik 97.1 0.0012 2.6E-08 48.8 5.4 38 33-70 81-119 (188)
100 PRK10748 flavin mononucleotide 97.1 0.00032 6.8E-09 54.6 2.2 33 3-36 7-39 (238)
101 TIGR01533 lipo_e_P4 5'-nucleot 97.1 0.0022 4.7E-08 51.0 6.8 57 5-62 74-160 (266)
102 TIGR01456 CECR5 HAD-superfamil 97.1 0.0012 2.5E-08 53.8 5.5 53 8-62 2-63 (321)
103 PRK13478 phosphonoacetaldehyde 97.0 0.00061 1.3E-08 53.8 3.4 33 3-36 1-34 (267)
104 TIGR01488 HAD-SF-IB Haloacid D 96.9 0.0019 4.2E-08 47.3 5.0 30 33-62 82-112 (177)
105 PLN02770 haloacid dehalogenase 96.9 0.00043 9.2E-09 54.2 1.4 32 4-36 20-51 (248)
106 TIGR03351 PhnX-like phosphonat 96.9 0.00066 1.4E-08 51.8 2.4 30 6-36 1-30 (220)
107 TIGR02252 DREG-2 REG-2-like, H 96.8 0.00083 1.8E-08 50.6 2.4 29 7-36 1-29 (203)
108 COG0546 Gph Predicted phosphat 96.8 0.00079 1.7E-08 51.8 2.2 34 4-38 2-35 (220)
109 PF03031 NIF: NLI interacting 96.8 0.00099 2.1E-08 48.4 2.5 52 7-59 1-71 (159)
110 TIGR02009 PGMB-YQAB-SF beta-ph 96.7 0.00066 1.4E-08 50.2 1.4 18 6-23 1-18 (185)
111 TIGR01548 HAD-SF-IA-hyp1 haloa 96.7 0.00062 1.3E-08 51.2 1.1 29 8-37 2-30 (197)
112 COG0241 HisB Histidinol phosph 96.7 0.0023 5E-08 47.9 4.1 46 6-52 5-65 (181)
113 PF12689 Acid_PPase: Acid Phos 96.7 0.0025 5.5E-08 47.2 4.2 56 6-62 3-85 (169)
114 TIGR02253 CTE7 HAD superfamily 96.7 0.0018 3.8E-08 49.4 3.3 32 6-38 2-33 (221)
115 PRK09552 mtnX 2-hydroxy-3-keto 96.6 0.0028 6.1E-08 48.5 4.4 28 33-60 83-111 (219)
116 PRK05446 imidazole glycerol-ph 96.6 0.003 6.5E-08 52.2 4.6 43 5-48 1-55 (354)
117 TIGR01422 phosphonatase phosph 96.6 0.0019 4.2E-08 50.4 3.3 31 5-36 1-32 (253)
118 PRK10563 6-phosphogluconate ph 96.6 0.0013 2.7E-08 50.3 2.1 19 4-22 2-20 (221)
119 PLN02779 haloacid dehalogenase 96.6 0.0011 2.3E-08 53.2 1.8 34 3-37 37-71 (286)
120 TIGR02254 YjjG/YfnB HAD superf 96.6 0.0013 2.8E-08 50.1 2.0 29 6-35 1-29 (224)
121 PRK13223 phosphoglycolate phos 96.5 0.00095 2.1E-08 53.1 1.1 31 4-35 11-41 (272)
122 PRK11590 hypothetical protein; 96.5 0.0021 4.5E-08 49.1 2.9 20 1-20 1-20 (211)
123 PRK13226 phosphoglycolate phos 96.4 0.0014 3.1E-08 50.6 1.2 31 6-37 12-42 (229)
124 PF03767 Acid_phosphat_B: HAD 96.4 0.0013 2.9E-08 51.0 0.9 47 5-52 71-144 (229)
125 PF06888 Put_Phosphatase: Puta 96.3 0.025 5.3E-07 44.2 7.8 57 25-83 73-132 (234)
126 TIGR01993 Pyr-5-nucltdase pyri 96.3 0.0035 7.5E-08 46.5 2.8 24 8-31 2-25 (184)
127 COG0637 Predicted phosphatase/ 96.3 0.0021 4.7E-08 49.5 1.6 32 5-37 1-32 (221)
128 COG4996 Predicted phosphatase 96.2 0.013 2.8E-07 41.6 5.2 63 7-70 1-88 (164)
129 TIGR01680 Veg_Stor_Prot vegeta 96.1 0.008 1.7E-07 47.8 4.1 47 5-52 100-174 (275)
130 TIGR01491 HAD-SF-IB-PSPlk HAD- 96.1 0.0038 8.2E-08 46.6 2.0 16 6-21 4-19 (201)
131 PHA02597 30.2 hypothetical pro 96.0 0.0029 6.4E-08 47.4 1.4 16 6-21 2-17 (197)
132 PRK09449 dUMP phosphatase; Pro 96.0 0.0067 1.4E-07 46.3 3.1 17 5-21 2-18 (224)
133 TIGR02251 HIF-SF_euk Dullard-l 95.9 0.028 6.1E-07 41.2 5.9 54 6-60 1-78 (162)
134 PRK06698 bifunctional 5'-methy 95.8 0.0036 7.9E-08 53.4 1.2 30 6-36 241-270 (459)
135 TIGR02245 HAD_IIID1 HAD-superf 95.8 0.024 5.2E-07 43.0 5.5 56 4-60 19-81 (195)
136 COG3882 FkbH Predicted enzyme 95.7 0.025 5.5E-07 48.2 5.8 60 1-60 217-292 (574)
137 TIGR01449 PGP_bact 2-phosphogl 95.7 0.0032 7E-08 47.6 0.4 27 9-36 1-27 (213)
138 TIGR01549 HAD-SF-IA-v1 haloaci 95.6 0.0037 8.1E-08 44.8 0.5 28 8-36 1-28 (154)
139 TIGR01454 AHBA_synth_RP 3-amin 95.6 0.0035 7.6E-08 47.3 0.3 26 9-35 1-26 (205)
140 TIGR01990 bPGM beta-phosphoglu 95.5 0.0056 1.2E-07 45.1 1.0 17 8-24 1-17 (185)
141 TIGR02250 FCP1_euk FCP1-like p 95.4 0.039 8.4E-07 40.3 5.0 57 3-60 3-94 (156)
142 TIGR01493 HAD-SF-IA-v2 Haloaci 95.3 0.0054 1.2E-07 45.0 0.5 15 8-22 1-15 (175)
143 PRK11133 serB phosphoserine ph 95.2 0.019 4.2E-07 46.9 3.2 26 4-36 108-133 (322)
144 TIGR01545 YfhB_g-proteo haloac 95.2 0.012 2.6E-07 45.1 1.8 18 5-22 4-21 (210)
145 PF00702 Hydrolase: haloacid d 94.9 0.0099 2.1E-07 44.6 0.9 30 6-36 1-34 (215)
146 TIGR02247 HAD-1A3-hyp Epoxide 94.9 0.015 3.3E-07 44.0 1.9 16 6-21 2-17 (211)
147 PLN02919 haloacid dehalogenase 94.5 0.017 3.8E-07 54.2 1.4 33 3-36 72-104 (1057)
148 COG1011 Predicted hydrolase (H 94.4 0.04 8.6E-07 41.9 3.1 21 3-23 1-21 (229)
149 KOG1615|consensus 94.2 0.051 1.1E-06 41.1 3.2 40 23-63 88-128 (227)
150 COG4087 Soluble P-type ATPase 94.1 0.047 1E-06 38.7 2.5 53 8-62 16-68 (152)
151 COG4359 Uncharacterized conser 93.8 0.17 3.7E-06 38.1 5.2 36 24-60 74-110 (220)
152 TIGR02137 HSK-PSP phosphoserin 93.8 0.03 6.5E-07 42.7 1.3 36 26-62 71-106 (203)
153 TIGR01490 HAD-SF-IB-hyp1 HAD-s 93.6 0.032 7E-07 41.8 1.1 14 8-21 1-14 (202)
154 PF06437 ISN1: IMP-specific 5' 93.3 0.19 4.1E-06 41.8 5.1 48 5-52 146-195 (408)
155 PF12710 HAD: haloacid dehalog 93.1 0.041 9E-07 40.6 1.1 30 33-62 98-128 (192)
156 COG5083 SMP2 Uncharacterized p 93.1 0.12 2.6E-06 43.7 3.8 48 5-53 374-433 (580)
157 TIGR01509 HAD-SF-IA-v3 haloaci 92.5 0.043 9.4E-07 40.1 0.4 15 8-22 1-15 (183)
158 KOG3109|consensus 92.0 0.19 4.2E-06 38.7 3.4 27 5-31 14-40 (244)
159 PRK09456 ?-D-glucose-1-phospha 91.9 0.095 2.1E-06 39.3 1.7 15 7-21 1-15 (199)
160 PF13419 HAD_2: Haloacid dehal 91.7 0.077 1.7E-06 38.0 1.0 14 9-22 1-14 (176)
161 PLN02177 glycerol-3-phosphate 91.6 0.13 2.9E-06 44.5 2.5 21 5-25 21-41 (497)
162 KOG2116|consensus 91.3 0.2 4.4E-06 44.2 3.3 47 6-53 530-588 (738)
163 PF06941 NT5C: 5' nucleotidase 91.1 0.13 2.8E-06 38.6 1.6 15 6-20 1-16 (191)
164 PLN02499 glycerol-3-phosphate 91.0 0.24 5.2E-06 42.7 3.3 25 5-29 7-31 (498)
165 KOG1618|consensus 89.7 0.5 1.1E-05 38.5 3.9 46 5-52 34-86 (389)
166 KOG2134|consensus 89.4 0.35 7.6E-06 40.3 2.9 41 5-46 74-127 (422)
167 TIGR03333 salvage_mtnX 2-hydro 89.1 0.19 4.2E-06 38.2 1.2 28 33-60 79-107 (214)
168 TIGR01454 AHBA_synth_RP 3-amin 88.4 0.64 1.4E-05 34.9 3.6 48 23-71 75-123 (205)
169 KOG3120|consensus 87.9 0.93 2E-05 35.1 4.2 37 25-62 86-124 (256)
170 TIGR01449 PGP_bact 2-phosphogl 87.3 0.88 1.9E-05 34.1 3.9 48 23-71 85-133 (213)
171 TIGR01511 ATPase-IB1_Cu copper 87.3 1 2.2E-05 39.6 4.7 57 5-62 384-444 (562)
172 TIGR02253 CTE7 HAD superfamily 86.4 1 2.2E-05 34.0 3.8 48 23-71 94-142 (221)
173 PLN02770 haloacid dehalogenase 86.4 1.2 2.5E-05 34.8 4.2 48 23-71 108-156 (248)
174 TIGR01548 HAD-SF-IA-hyp1 haloa 86.3 1.1 2.4E-05 33.4 3.8 42 29-71 112-154 (197)
175 KOG3040|consensus 85.4 1.4 3.1E-05 33.9 4.0 57 3-61 4-64 (262)
176 PF13419 HAD_2: Haloacid dehal 85.2 0.74 1.6E-05 32.7 2.4 48 23-71 77-125 (176)
177 TIGR03351 PhnX-like phosphonat 85.1 1.1 2.4E-05 33.9 3.4 48 23-71 87-137 (220)
178 KOG2914|consensus 84.6 0.49 1.1E-05 36.6 1.2 52 5-57 9-63 (222)
179 TIGR01490 HAD-SF-IB-hyp1 HAD-s 84.4 5.1 0.00011 29.7 6.7 39 23-62 87-126 (202)
180 COG0546 Gph Predicted phosphat 84.2 1.4 3.1E-05 33.6 3.7 47 24-71 90-137 (220)
181 PRK11590 hypothetical protein; 84.1 4.7 0.0001 30.5 6.5 74 25-105 97-172 (211)
182 PF09047 MEF2_binding: MEF2 bi 83.5 1 2.2E-05 23.5 1.7 19 16-35 1-19 (35)
183 PF04312 DUF460: Protein of un 83.5 1.5 3.1E-05 31.4 3.1 46 7-55 44-94 (138)
184 PRK10826 2-deoxyglucose-6-phos 83.5 2.2 4.7E-05 32.4 4.4 49 22-71 91-140 (222)
185 COG3700 AphA Acid phosphatase 81.8 2.5 5.5E-05 31.8 4.0 47 7-53 64-144 (237)
186 TIGR02009 PGMB-YQAB-SF beta-ph 81.8 1.7 3.7E-05 31.7 3.2 46 23-71 88-134 (185)
187 KOG3085|consensus 81.4 2.1 4.6E-05 33.5 3.6 17 3-19 4-20 (237)
188 TIGR01422 phosphonatase phosph 81.2 1.8 3.9E-05 33.6 3.3 39 23-62 99-138 (253)
189 TIGR01106 ATPase-IIC_X-K sodiu 81.0 1.8 3.8E-05 40.8 3.6 39 23-62 568-607 (997)
190 PRK13223 phosphoglycolate phos 80.4 2.5 5.3E-05 33.5 3.8 48 23-71 101-149 (272)
191 TIGR01525 ATPase-IB_hvy heavy 80.3 2.7 5.9E-05 36.8 4.4 58 4-62 362-424 (556)
192 KOG2882|consensus 79.4 2.5 5.4E-05 34.2 3.5 47 5-53 21-68 (306)
193 KOG4549|consensus 79.0 5 0.00011 28.4 4.5 49 7-56 19-77 (144)
194 PF11019 DUF2608: Protein of u 78.9 2.7 5.9E-05 33.1 3.6 21 33-53 90-111 (252)
195 TIGR01545 YfhB_g-proteo haloac 78.8 9.8 0.00021 28.9 6.5 75 24-105 95-171 (210)
196 COG2503 Predicted secreted aci 78.0 3.2 6.9E-05 32.7 3.6 27 5-31 78-114 (274)
197 TIGR01509 HAD-SF-IA-v3 haloaci 77.7 3.8 8.1E-05 29.6 3.9 47 23-71 85-132 (183)
198 TIGR02254 YjjG/YfnB HAD superf 77.3 3.5 7.6E-05 31.0 3.7 48 23-71 97-144 (224)
199 TIGR02244 HAD-IG-Ncltidse HAD 76.8 1.4 3E-05 36.4 1.4 20 2-21 8-27 (343)
200 TIGR01544 HAD-SF-IE haloacid d 76.5 6.1 0.00013 31.7 5.0 40 22-62 120-160 (277)
201 TIGR01491 HAD-SF-IB-PSPlk HAD- 76.2 4.5 9.8E-05 29.8 4.0 39 23-62 80-119 (201)
202 PF03437 BtpA: BtpA family; I 74.8 10 0.00022 30.0 5.8 79 12-106 172-253 (254)
203 TIGR01512 ATPase-IB2_Cd heavy 74.5 4.5 9.7E-05 35.4 4.1 55 7-62 343-402 (536)
204 PRK06698 bifunctional 5'-methy 74.0 4.6 0.0001 34.5 4.0 48 23-71 330-378 (459)
205 PRK11033 zntA zinc/cadmium/mer 73.9 5.1 0.00011 36.6 4.4 58 4-62 546-607 (741)
206 KOG1605|consensus 72.8 2.3 4.9E-05 33.8 1.7 18 4-21 87-104 (262)
207 PRK13226 phosphoglycolate phos 72.6 5.6 0.00012 30.4 3.8 47 23-70 95-142 (229)
208 COG5663 Uncharacterized conser 71.9 1.9 4.2E-05 32.0 1.0 22 4-25 4-25 (194)
209 PRK13478 phosphonoacetaldehyde 71.8 5.3 0.00012 31.3 3.6 37 23-60 101-138 (267)
210 COG0637 Predicted phosphatase/ 69.9 4 8.8E-05 31.3 2.5 47 23-70 86-133 (221)
211 PRK09449 dUMP phosphatase; Pro 69.6 8.1 0.00018 29.1 4.1 48 23-71 95-142 (224)
212 PRK10725 fructose-1-P/6-phosph 69.5 7.8 0.00017 28.3 3.9 43 28-71 92-134 (188)
213 TIGR01497 kdpB K+-transporting 69.0 7 0.00015 35.3 4.1 57 5-62 425-485 (675)
214 TIGR03333 salvage_mtnX 2-hydro 68.1 8.8 0.00019 29.0 4.0 12 8-19 1-12 (214)
215 PF00702 Hydrolase: haloacid d 68.0 3.9 8.5E-05 30.3 2.0 39 23-62 127-166 (215)
216 PLN02588 glycerol-3-phosphate 64.4 4.9 0.00011 35.0 2.1 22 6-27 50-71 (525)
217 PRK01122 potassium-transportin 63.5 10 0.00022 34.3 4.0 57 5-62 424-484 (679)
218 TIGR02137 HSK-PSP phosphoserin 63.1 16 0.00034 27.7 4.5 13 7-19 2-14 (203)
219 KOG2469|consensus 62.5 3.6 7.7E-05 34.7 0.9 24 3-26 24-47 (424)
220 TIGR02244 HAD-IG-Ncltidse HAD 62.2 14 0.00031 30.6 4.3 51 23-74 184-243 (343)
221 TIGR02252 DREG-2 REG-2-like, H 61.8 11 0.00023 28.0 3.4 46 23-70 105-151 (203)
222 TIGR01549 HAD-SF-IA-v1 haloaci 61.6 9.2 0.0002 26.9 2.9 34 25-59 66-100 (154)
223 TIGR01522 ATPase-IIA2_Ca golgi 58.8 18 0.00038 33.8 4.8 58 4-62 501-567 (884)
224 PRK14010 potassium-transportin 58.1 16 0.00036 33.0 4.3 56 6-62 421-480 (673)
225 TIGR01657 P-ATPase-V P-type AT 58.0 11 0.00023 35.9 3.3 40 22-62 655-695 (1054)
226 TIGR01990 bPGM beta-phosphoglu 57.7 15 0.00033 26.6 3.5 45 23-70 87-132 (185)
227 TIGR01993 Pyr-5-nucltdase pyri 57.1 24 0.00051 25.7 4.5 46 23-71 84-129 (184)
228 PF12710 HAD: haloacid dehalog 56.0 5.8 0.00013 28.9 1.0 13 9-21 1-13 (192)
229 KOG2961|consensus 55.8 17 0.00038 26.7 3.3 35 4-39 41-76 (190)
230 PRK10671 copA copper exporting 55.2 24 0.00051 32.7 5.0 57 5-62 629-689 (834)
231 PRK11133 serB phosphoserine ph 53.7 56 0.0012 26.7 6.5 39 22-61 180-219 (322)
232 PF05761 5_nucleotid: 5' nucle 53.7 7.9 0.00017 33.2 1.6 17 3-19 9-25 (448)
233 PRK11587 putative phosphatase; 53.1 20 0.00043 27.0 3.6 38 23-61 83-121 (218)
234 COG2217 ZntA Cation transport 52.5 23 0.00049 32.4 4.3 54 8-62 519-576 (713)
235 PLN02811 hydrolase 50.0 25 0.00055 26.5 3.8 31 23-54 78-109 (220)
236 TIGR02247 HAD-1A3-hyp Epoxide 49.6 21 0.00047 26.5 3.3 27 23-50 94-121 (211)
237 TIGR01647 ATPase-IIIA_H plasma 47.6 25 0.00054 32.3 3.8 41 21-62 440-481 (755)
238 PF06189 5-nucleotidase: 5'-nu 46.9 25 0.00055 27.9 3.3 14 9-22 124-137 (264)
239 COG0434 SgcQ Predicted TIM-bar 45.6 77 0.0017 25.1 5.7 81 12-107 177-259 (263)
240 PRK09456 ?-D-glucose-1-phospha 44.0 37 0.0008 25.1 3.8 31 23-54 84-115 (199)
241 PRK10517 magnesium-transportin 43.5 34 0.00074 32.1 4.1 40 22-62 549-589 (902)
242 TIGR01691 enolase-ppase 2,3-di 42.9 16 0.00034 28.2 1.6 29 6-35 1-32 (220)
243 TIGR01116 ATPase-IIA1_Ca sarco 41.5 32 0.00069 32.3 3.7 40 22-62 536-576 (917)
244 TIGR03192 benz_CoA_bzdQ benzoy 40.1 57 0.0012 26.5 4.4 48 3-52 41-100 (293)
245 cd04723 HisA_HisF Phosphoribos 38.9 34 0.00074 26.4 3.0 8 7-14 161-168 (233)
246 TIGR01517 ATPase-IIB_Ca plasma 38.3 39 0.00085 31.8 3.7 40 22-62 578-618 (941)
247 TIGR01523 ATPase-IID_K-Na pota 38.3 40 0.00086 32.3 3.8 39 23-62 646-685 (1053)
248 PF02670 DXP_reductoisom: 1-de 37.4 52 0.0011 23.2 3.4 43 17-60 3-46 (129)
249 KOG3212|consensus 37.1 31 0.00068 26.1 2.3 14 41-54 100-113 (208)
250 KOG3189|consensus 37.0 41 0.00089 25.9 3.0 39 134-172 94-132 (252)
251 PTZ00079 NADP-specific glutama 36.1 40 0.00087 29.1 3.1 31 6-38 261-292 (454)
252 PLN02779 haloacid dehalogenase 35.8 46 0.001 26.5 3.3 36 23-59 144-180 (286)
253 TIGR01524 ATPase-IIIB_Mg magne 35.5 47 0.001 31.1 3.7 40 22-62 514-554 (867)
254 PLN02919 haloacid dehalogenase 35.3 54 0.0012 31.4 4.1 47 24-71 162-210 (1057)
255 TIGR01494 ATPase_P-type ATPase 35.0 63 0.0014 27.9 4.3 54 6-60 327-384 (499)
256 cd07018 S49_SppA_67K_type Sign 34.5 82 0.0018 24.0 4.4 42 9-51 1-58 (222)
257 TIGR00090 iojap_ybeB iojap-lik 34.5 40 0.00087 22.5 2.4 15 40-54 30-44 (99)
258 PHA01735 hypothetical protein 34.4 44 0.00096 20.9 2.3 36 24-60 31-67 (76)
259 PRK04128 1-(5-phosphoribosyl)- 34.0 44 0.00095 25.8 2.9 47 6-58 44-93 (228)
260 KOG2832|consensus 33.9 1.2E+02 0.0025 25.6 5.3 54 6-60 189-250 (393)
261 PRK04081 hypothetical protein; 33.4 73 0.0016 24.3 3.8 31 1-35 67-97 (207)
262 COG0777 AccD Acetyl-CoA carbox 33.3 94 0.002 25.1 4.5 40 68-109 220-259 (294)
263 cd05013 SIS_RpiR RpiR-like pro 32.7 92 0.002 20.9 4.1 30 25-55 73-103 (139)
264 cd05008 SIS_GlmS_GlmD_1 SIS (S 32.6 51 0.0011 22.2 2.8 33 23-56 57-90 (126)
265 PRK11538 ribosome-associated p 32.4 40 0.00086 22.8 2.1 14 41-54 36-49 (105)
266 COG1591 Holliday junction reso 32.1 75 0.0016 22.7 3.5 62 29-111 11-81 (137)
267 PF00834 Ribul_P_3_epim: Ribul 31.9 1.2E+02 0.0025 23.0 4.8 48 8-57 28-77 (201)
268 PRK12358 putative 6-phosphoglu 31.7 35 0.00076 26.5 2.0 37 22-58 10-48 (239)
269 COG0106 HisA Phosphoribosylfor 31.6 65 0.0014 25.4 3.4 39 8-54 164-207 (241)
270 PRK13402 gamma-glutamyl kinase 31.5 93 0.002 26.0 4.5 47 2-48 1-52 (368)
271 PRK13587 1-(5-phosphoribosyl)- 31.5 80 0.0017 24.5 4.0 43 7-57 164-211 (234)
272 PRK02083 imidazole glycerol ph 31.0 1E+02 0.0022 24.0 4.5 29 29-58 186-217 (253)
273 PF07302 AroM: AroM protein; 30.7 19 0.00041 27.9 0.3 43 7-50 54-100 (221)
274 PF07726 AAA_3: ATPase family 29.2 34 0.00073 24.3 1.3 30 22-51 72-114 (131)
275 COG0528 PyrH Uridylate kinase 29.0 1.4E+02 0.003 23.5 4.7 43 5-47 4-52 (238)
276 PTZ00489 glutamate 5-kinase; P 28.6 1.2E+02 0.0026 24.0 4.6 14 7-20 165-178 (264)
277 PF08620 RPAP1_C: RPAP1-like, 28.3 30 0.00065 21.9 0.9 8 11-18 5-12 (73)
278 PF12965 DUF3854: Domain of un 28.1 44 0.00094 23.5 1.8 7 8-14 72-78 (130)
279 PRK06557 L-ribulose-5-phosphat 27.5 87 0.0019 23.9 3.5 52 5-57 59-112 (221)
280 PF06901 FrpC: RTX iron-regula 27.3 35 0.00076 26.0 1.2 13 7-19 59-71 (271)
281 COG2433 Uncharacterized conser 26.7 68 0.0015 28.7 3.0 39 7-48 256-297 (652)
282 cd05710 SIS_1 A subgroup of th 26.6 70 0.0015 21.7 2.6 32 23-55 58-90 (120)
283 COG0743 Dxr 1-deoxy-D-xylulose 26.5 1E+02 0.0023 25.9 3.9 44 16-60 5-49 (385)
284 PF12611 DUF3766: Protein of u 26.3 34 0.00073 16.8 0.7 11 8-18 14-24 (24)
285 KOG0207|consensus 26.0 1.8E+02 0.0038 27.6 5.6 57 4-61 701-761 (951)
286 COG0799 Uncharacterized homolo 26.0 69 0.0015 22.2 2.4 13 41-53 36-48 (115)
287 PRK15122 magnesium-transportin 25.8 77 0.0017 29.8 3.4 40 22-62 549-589 (903)
288 TIGR00734 hisAF_rel hisA/hisF 25.8 1.2E+02 0.0026 23.2 4.1 41 7-55 156-201 (221)
289 TIGR01691 enolase-ppase 2,3-di 25.5 91 0.002 23.9 3.3 36 23-59 95-131 (220)
290 PF02017 CIDE-N: CIDE-N domain 25.2 1E+02 0.0022 19.8 2.9 31 8-47 42-73 (78)
291 PF06200 tify: tify domain; I 24.8 1.3E+02 0.0027 16.2 3.3 12 94-105 23-34 (36)
292 TIGR00259 thylakoid_BtpA membr 24.6 3.6E+02 0.0078 21.4 8.3 80 13-107 172-254 (257)
293 KOG3982|consensus 23.8 91 0.002 26.2 3.1 47 6-52 139-196 (475)
294 TIGR00236 wecB UDP-N-acetylglu 23.7 1.3E+02 0.0028 24.4 4.1 30 33-62 20-52 (365)
295 cd06537 CIDE_N_B CIDE_N domain 23.4 1.3E+02 0.0028 19.5 3.1 33 7-48 40-73 (81)
296 PRK12348 sgaE L-ribulose-5-pho 23.3 2E+02 0.0044 22.1 4.9 53 5-58 52-106 (228)
297 PRK09762 galactosamine-6-phosp 23.1 61 0.0013 25.0 1.9 36 23-58 11-48 (232)
298 PF02410 Oligomerisation: Olig 22.8 64 0.0014 21.4 1.8 14 40-53 30-43 (100)
299 COG0279 GmhA Phosphoheptose is 22.7 92 0.002 23.2 2.6 19 33-51 103-124 (176)
300 smart00266 CAD Domains present 22.7 1.3E+02 0.0029 19.1 3.1 29 7-44 39-67 (74)
301 COG1011 Predicted hydrolase (H 22.7 1.4E+02 0.0031 22.1 3.9 48 23-71 99-146 (229)
302 COG1210 GalU UDP-glucose pyrop 22.7 95 0.0021 25.1 2.9 31 28-58 37-69 (291)
303 cd05014 SIS_Kpsf KpsF-like pro 22.5 80 0.0017 21.3 2.3 32 23-55 58-90 (128)
304 cd06539 CIDE_N_A CIDE_N domain 22.4 1.4E+02 0.003 19.2 3.1 32 7-47 41-73 (78)
305 PF01380 SIS: SIS domain SIS d 22.4 96 0.0021 20.8 2.7 33 24-57 65-98 (131)
306 PRK06833 L-fuculose phosphate 22.3 1.3E+02 0.0028 22.9 3.5 52 5-56 54-106 (214)
307 COG3384 Aromatic ring-opening 22.2 91 0.002 24.9 2.7 48 2-53 129-176 (268)
308 TIGR02744 TrbI_Ftype type-F co 22.2 66 0.0014 22.2 1.7 26 6-31 32-62 (112)
309 cd06536 CIDE_N_ICAD CIDE_N dom 22.0 1.3E+02 0.0028 19.4 2.9 32 7-47 43-75 (80)
310 TIGR00334 5S_RNA_mat_M5 ribonu 21.5 3.5E+02 0.0076 20.2 6.3 29 41-77 4-33 (174)
311 PRK02853 hypothetical protein; 21.2 1.5E+02 0.0032 21.7 3.4 43 2-45 5-48 (161)
312 COG4502 5'(3')-deoxyribonucleo 21.1 28 0.0006 25.3 -0.3 14 6-19 3-16 (180)
313 PRK09722 allulose-6-phosphate 21.0 2.5E+02 0.0053 21.9 4.9 46 8-57 30-79 (229)
314 PF14488 DUF4434: Domain of un 21.0 79 0.0017 23.2 2.1 31 13-43 1-37 (166)
315 TIGR00735 hisF imidazoleglycer 20.8 2E+02 0.0044 22.4 4.5 11 99-109 240-250 (254)
316 PRK13717 conjugal transfer pro 20.6 72 0.0016 22.5 1.7 27 5-31 44-75 (128)
317 PRK10671 copA copper exporting 20.1 55 0.0012 30.4 1.3 21 4-24 515-535 (834)
318 PRK15418 transcriptional regul 20.1 66 0.0014 26.2 1.6 43 9-52 246-289 (318)
319 cd05017 SIS_PGI_PMI_1 The memb 20.1 1.1E+02 0.0024 20.6 2.5 33 23-58 54-87 (119)
No 1
>PTZ00174 phosphomannomutase; Provisional
Probab=99.95 E-value=2.3e-27 Score=185.90 Aligned_cols=171 Identities=43% Similarity=0.710 Sum_probs=122.8
Q ss_pred CCCCcceEEEEecCCCccCCCCCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEEecCCceeee
Q psy16481 1 MTCRANTICLFDVDGTLTQPRQKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLVAYK 79 (175)
Q Consensus 1 ~~~~~~kli~~DlDGTLl~~~~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~~NGa~i~~ 79 (175)
|.|+ +|+||+|||||||+++++++++++++ |++++++ ++|++||||++..+.+.++.... ...+++||+|||+|+.
T Consensus 1 ~~~~-~klia~DlDGTLL~~~~~is~~~~~a-i~~l~~~Gi~~viaTGR~~~~i~~~l~~~~~-~~~~~~I~~NGa~I~~ 77 (247)
T PTZ00174 1 MEMK-KTILLFDVDGTLTKPRNPITQEMKDT-LAKLKSKGFKIGVVGGSDYPKIKEQLGEDVL-EDFDYVFSENGLVAYK 77 (247)
T ss_pred CCCC-CeEEEEECcCCCcCCCCCCCHHHHHH-HHHHHHCCCEEEEEcCCCHHHHHHHHhhhhh-cccCeEEeCCceEEEE
Confidence 4455 79999999999999999999999999 9999999 99999999999999888864211 1124789999999998
Q ss_pred CCeEeeccchhhhhCHHHHHHHHHHHHHhcccccccccccceeeecccccccch--------------hhcc-HHHHHHH
Q psy16481 80 NGKLFEKKSIIDHMGEDKIQTFINYCLQHLSTVTLPFKRGNFIEFRTGLINSII--------------DHMG-EDKIQTF 144 (175)
Q Consensus 80 ~~~~i~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--------------~~~~-~~~~~~~ 144 (175)
+++.+++..+...++.+.+.++++.+.++...+.++...+.|+..........+ .+.. .+...++
T Consensus 78 ~~~~i~~~~i~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (247)
T PTZ00174 78 DGELFHSQSILKFLGEEKLKKFINFCLRYIADLDIPVKRGTFIEYRNGMINISPIGRNCSQEERDEFEKYDKEHHIREKF 157 (247)
T ss_pred CCeEEEEEcchhcCCHHHHHHHHHHHHHHHHhcCCccceeeeEEcCCceEEeccccccCCHHHHHHHHhcCCcchHHHHH
Confidence 888888877533347899999999887653333333444555443211100000 0111 2234567
Q ss_pred HHHHHHhcCCCCCceee--cceE-EecCCcccC
Q psy16481 145 INYCLQHLSTVTLPFKR--GNFI-EFRTGLINH 174 (175)
Q Consensus 145 ~~~l~~~~~~~~~~~s~--~~~i-i~~~Gv~K~ 174 (175)
.+.+.+.|+++.+..+. +.++ ++|+|+||.
T Consensus 158 ~~~l~~~~~~~~~~~s~~~~~~leI~~~gvsKg 190 (247)
T PTZ00174 158 IQDLKKEFSDLGLKFSIGGQISFDVFPKGWDKT 190 (247)
T ss_pred HHHHHHhcCCCCeEEEecCceEEEeeeCCCcHH
Confidence 77888888766666665 3688 999999995
No 2
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=99.95 E-value=8.9e-27 Score=184.16 Aligned_cols=165 Identities=13% Similarity=0.112 Sum_probs=122.7
Q ss_pred cceEEEEecCCCccCCCCCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEEecCCceeee--CC
Q psy16481 5 ANTICLFDVDGTLTQPRQKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLVAYK--NG 81 (175)
Q Consensus 5 ~~kli~~DlDGTLl~~~~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~~NGa~i~~--~~ 81 (175)
++|+||+|||||||+++++++++++++ |++|+++ ++|++||||++.++.+.++.+++....+++|++|||.|++ +|
T Consensus 2 ~~kli~~DlDGTLl~~~~~i~~~~~~a-i~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~~~~I~~NGa~i~~~~~~ 80 (270)
T PRK10513 2 AIKLIAIDMDGTLLLPDHTISPAVKQA-IAAARAKGVNVVLTTGRPYAGVHRYLKELHMEQPGDYCITNNGALVQKAADG 80 (270)
T ss_pred ceEEEEEecCCcCcCCCCccCHHHHHH-HHHHHHCCCEEEEecCCChHHHHHHHHHhCCCCCCCeEEEcCCeEEEECCCC
Confidence 489999999999999999999999999 9999999 9999999999999988888766432234799999999995 68
Q ss_pred eEeeccchhhhhCHHHHHHHHHHHHHhcccccccccccceeeecc------------ccc-------ccch--------h
Q psy16481 82 KLFEKKSIIDHMGEDKIQTFINYCLQHLSTVTLPFKRGNFIEFRT------------GLI-------NSII--------D 134 (175)
Q Consensus 82 ~~i~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~------------~~~-------~~~~--------~ 134 (175)
+.+++..+ +.+.+.++++++++.+..+.++..++.|..... ... .+.. .
T Consensus 81 ~~i~~~~l----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 156 (270)
T PRK10513 81 ETVAQTAL----SYDDYLYLEKLSREVGVHFHALDRNTLYTANRDISYYTVHESFLTGIPLVFREVEKMDPNLQFPKVMM 156 (270)
T ss_pred CEEEecCC----CHHHHHHHHHHHHHcCCcEEEEECCEEEEecCCcchhHHHhhhhccCCccccchhhccccCCceEEEE
Confidence 88998888 999999999998877654444443444432100 000 0000 0
Q ss_pred hccHHHHHHHHHHHHHhcC-CCCCceeecceE-EecCCcccC
Q psy16481 135 HMGEDKIQTFINYCLQHLS-TVTLPFKRGNFI-EFRTGLINH 174 (175)
Q Consensus 135 ~~~~~~~~~~~~~l~~~~~-~~~~~~s~~~~i-i~~~Gv~K~ 174 (175)
+...+...++.+.+.+.+. .+.++.|.++++ ++|+|+||.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~eI~~~gvsKg 198 (270)
T PRK10513 157 IDEPEILDAAIARIPAEVKERYTVLKSAPYFLEILDKRVNKG 198 (270)
T ss_pred eCCHHHHHHHHHHhHHHhcCcEEEEEecCeeEEEeCCCCChH
Confidence 1123334466666766665 477778888899 999999995
No 3
>PLN02423 phosphomannomutase
Probab=99.94 E-value=4.8e-26 Score=178.23 Aligned_cols=172 Identities=38% Similarity=0.691 Sum_probs=127.3
Q ss_pred CCCCcce-EEEEecCCCccCCCCCCCHHHHHHHHHhhCCCeEEEEEcCCCHHHHHHHhcCCCcccccceEEecCCceeee
Q psy16481 1 MTCRANT-ICLFDVDGTLTQPRQKAQNETLDFLLKKLKPLSHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLVAYK 79 (175)
Q Consensus 1 ~~~~~~k-li~~DlDGTLl~~~~~i~~~~~~~~l~~l~~~i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~~NGa~i~~ 79 (175)
|...+.| ++|||||||||+++++++++++++ |++|+++++|++||||++..+.+.++... .....++|++||+.++.
T Consensus 1 ~~~~~~~~i~~~D~DGTLl~~~~~i~~~~~~a-i~~l~~~i~fviaTGR~~~~~~~~~~~~~-~~~~~~~I~~NGa~i~~ 78 (245)
T PLN02423 1 MAARKPGVIALFDVDGTLTAPRKEATPEMLEF-MKELRKVVTVGVVGGSDLSKISEQLGKTV-INDYDYVFSENGLVAHK 78 (245)
T ss_pred CCCCccceEEEEeccCCCcCCCCcCCHHHHHH-HHHHHhCCEEEEECCcCHHHHHHHhcccc-cccCCEEEECCceEEEe
Confidence 4455666 555999999999999999999999 99999669999999999999988887631 11223789999999998
Q ss_pred CCeEeeccchhhhhCHHHHHHHHHHHHHhcccccccccccceeeecccccccc--------h------hhcc-HHHHHHH
Q psy16481 80 NGKLFEKKSIIDHMGEDKIQTFINYCLQHLSTVTLPFKRGNFIEFRTGLINSI--------I------DHMG-EDKIQTF 144 (175)
Q Consensus 80 ~~~~i~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--------~------~~~~-~~~~~~~ 144 (175)
+|+.++...+...++.+.++++++++++......+++..+.|++.+....... . .+.. .+...++
T Consensus 79 ~g~~i~~~~l~~~l~~~~~~~ii~~~~~~~~~~~i~~~~~~~ie~~~~i~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~ 158 (245)
T PLN02423 79 DGKLIGTQSLKSFLGEDKLKEFINFTLHYIADLDIPIKRGTFIEFRSGMLNVSPIGRNCSQEERDEFEKYDKVHNIRPKM 158 (245)
T ss_pred CCEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCccccCCeEEccCCccccCcccccCCHhHHhhHHhhCccchHHHHH
Confidence 89999886654555889999999999876544445555566665432221000 0 0111 2344577
Q ss_pred HHHHHHhcCCCCCceeec--ceE-EecCCcccC
Q psy16481 145 INYCLQHLSTVTLPFKRG--NFI-EFRTGLINH 174 (175)
Q Consensus 145 ~~~l~~~~~~~~~~~s~~--~~i-i~~~Gv~K~ 174 (175)
.+.+.+.|++++++.|.+ .|+ ++|+||||.
T Consensus 159 ~~~l~~~~~~~~~~~s~~g~~~iDi~~~gvnKg 191 (245)
T PLN02423 159 VSVLREKFAHLNLTYSIGGQISFDVFPQGWDKT 191 (245)
T ss_pred HHHHHHhCCCCcEEEecCCcEEEEEeeCCCCHH
Confidence 888889998778877765 699 999999995
No 4
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=99.94 E-value=1.7e-26 Score=182.95 Aligned_cols=161 Identities=17% Similarity=0.246 Sum_probs=122.5
Q ss_pred ceEEEEecCCCccCCCCCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEEecCCceeee-CCeE
Q psy16481 6 NTICLFDVDGTLTQPRQKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLVAYK-NGKL 83 (175)
Q Consensus 6 ~kli~~DlDGTLl~~~~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~~NGa~i~~-~~~~ 83 (175)
+|+||+|||||||++++.|+++++++ |++|+++ +.|++||||++..+.+.++.+++. .++||+|||.|++ +++.
T Consensus 2 ~kli~~DlDGTLl~~~~~i~~~~~~a-i~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~---~~~I~~NGa~I~~~~~~~ 77 (272)
T PRK15126 2 ARLAAFDMDGTLLMPDHHLGEKTLST-LARLRERDITLTFATGRHVLEMQHILGALSLD---AYLITGNGTRVHSLEGEL 77 (272)
T ss_pred ccEEEEeCCCcCcCCCCcCCHHHHHH-HHHHHHCCCEEEEECCCCHHHHHHHHHHcCCC---CcEEecCCcEEEcCCCCE
Confidence 69999999999999999999999999 9999999 999999999999999888877543 3789999999995 7788
Q ss_pred eeccchhhhhCHHHHHHHHHHHHHhcccccccccccceeeecc----------cc-cc------cc-h------hhccHH
Q psy16481 84 FEKKSIIDHMGEDKIQTFINYCLQHLSTVTLPFKRGNFIEFRT----------GL-IN------SI-I------DHMGED 139 (175)
Q Consensus 84 i~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~----------~~-~~------~~-~------~~~~~~ 139 (175)
++...| +.+.+.++++++++.+..+.++..++.|..... .. .. +. . .+..++
T Consensus 78 l~~~~i----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~~~~~~ 153 (272)
T PRK15126 78 LHRQDL----PADVAELVLHQQWDTRASMHVFNDDGWFTGKEIPALLQAHVYSGFRYQLIDLKRLPAHGVTKICFCGDHD 153 (272)
T ss_pred EEeecC----CHHHHHHHHHHhhhcCcEEEEEcCCeEEecCCcHHHHHHHHhcCCceEEecHHHccccCceEEEEECCHH
Confidence 888888 999999999998877654444444443321100 00 00 00 0 111334
Q ss_pred HHHHHHHHHHHhcC-CCCCceeecceE-EecCCcccC
Q psy16481 140 KIQTFINYCLQHLS-TVTLPFKRGNFI-EFRTGLINH 174 (175)
Q Consensus 140 ~~~~~~~~l~~~~~-~~~~~~s~~~~i-i~~~Gv~K~ 174 (175)
...++.+.+.+.++ .+.++.|.++++ ++|+|+||.
T Consensus 154 ~~~~~~~~l~~~~~~~~~~~~s~~~~~eI~~~g~sKg 190 (272)
T PRK15126 154 DLTRLQIQLNEALGERAHLCFSATDCLEVLPVGCNKG 190 (272)
T ss_pred HHHHHHHHHHHHhcCCEEEEEcCCcEEEeecCCCChH
Confidence 45567777777776 477777888899 999999995
No 5
>PRK10976 putative hydrolase; Provisional
Probab=99.94 E-value=3.5e-26 Score=180.52 Aligned_cols=161 Identities=14% Similarity=0.142 Sum_probs=120.7
Q ss_pred ceEEEEecCCCccCCCCCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEEecCCceeee-CCeE
Q psy16481 6 NTICLFDVDGTLTQPRQKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLVAYK-NGKL 83 (175)
Q Consensus 6 ~kli~~DlDGTLl~~~~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~~NGa~i~~-~~~~ 83 (175)
+|+||+|||||||+++++++++++++ |++++++ ++|++||||++..+.+.++.+++. .++||+|||+|++ +|+.
T Consensus 2 ikli~~DlDGTLl~~~~~is~~~~~a-i~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~---~~~I~~NGa~i~~~~~~~ 77 (266)
T PRK10976 2 YQVVASDLDGTLLSPDHTLSPYAKET-LKLLTARGIHFVFATGRHHVDVGQIRDNLEIK---SYMITSNGARVHDTDGNL 77 (266)
T ss_pred ceEEEEeCCCCCcCCCCcCCHHHHHH-HHHHHHCCCEEEEEcCCChHHHHHHHHhcCCC---CeEEEcCCcEEECCCCCE
Confidence 69999999999999999999999999 9999999 999999999999998888876542 3789999999995 6888
Q ss_pred eeccchhhhhCHHHHHHHHHHHHHh-cccccccccccceeeeccc-----------ccc------cc--h-----h-hcc
Q psy16481 84 FEKKSIIDHMGEDKIQTFINYCLQH-LSTVTLPFKRGNFIEFRTG-----------LIN------SI--I-----D-HMG 137 (175)
Q Consensus 84 i~~~~l~~~l~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~-----------~~~------~~--~-----~-~~~ 137 (175)
+++..| +.+.+.+++++++++ ...+.++..++.|+..... ... +. . . ...
T Consensus 78 i~~~~l----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ki~~~~~~ 153 (266)
T PRK10976 78 IFSHNL----DRDIASDLFGVVHDNPDIITNVYRDDEWFMNRHRPEEMRFFKEAVFKYQLYEPGLLEPDGVSKVFFTCDS 153 (266)
T ss_pred ehhhcC----CHHHHHHHHHhhcccCCEEEEEEcCCeEEEcCCChHHHHHHHhcCCcceeechhhcccCCceEEEEEcCC
Confidence 888888 999999999998764 2223333444444321100 000 00 0 0 112
Q ss_pred HHHHHHHHHHHHHhcC-CCCCceeecceE-EecCCcccC
Q psy16481 138 EDKIQTFINYCLQHLS-TVTLPFKRGNFI-EFRTGLINH 174 (175)
Q Consensus 138 ~~~~~~~~~~l~~~~~-~~~~~~s~~~~i-i~~~Gv~K~ 174 (175)
.+...++.+.+.+.++ .+.++.|.++++ ++|+|+||.
T Consensus 154 ~~~~~~~~~~l~~~~~~~~~~~~s~~~~~eI~~~gvsKg 192 (266)
T PRK10976 154 HEKLLPLEQAINARWGDRVNVSFSTLTCLEVMAGGVSKG 192 (266)
T ss_pred HHHHHHHHHHHHHHhCCcEEEEEeCCceEEEEcCCCChH
Confidence 3344566777777776 477778888899 999999995
No 6
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=99.93 E-value=8.2e-25 Score=172.81 Aligned_cols=102 Identities=19% Similarity=0.232 Sum_probs=89.7
Q ss_pred cceEEEEecCCCccCCCCCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEEecCCceeee--CC
Q psy16481 5 ANTICLFDVDGTLTQPRQKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLVAYK--NG 81 (175)
Q Consensus 5 ~~kli~~DlDGTLl~~~~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~~NGa~i~~--~~ 81 (175)
++|+||+|||||||++++.++++++++ |++++++ +.|++||||++..+.+.++.+++. .++|++|||+|++ ++
T Consensus 2 ~~kli~~DlDGTLl~~~~~i~~~~~~a-i~~~~~~G~~~~iaTGR~~~~~~~~~~~l~~~---~~~I~~NGa~i~d~~~~ 77 (272)
T PRK10530 2 TYRVIALDLDGTLLTPKKTILPESLEA-LARAREAGYKVIIVTGRHHVAIHPFYQALALD---TPAICCNGTYLYDYQAK 77 (272)
T ss_pred CccEEEEeCCCceECCCCccCHHHHHH-HHHHHHCCCEEEEEcCCChHHHHHHHHhcCCC---CCEEEcCCcEEEecCCC
Confidence 479999999999999999999999999 9999999 999999999999998888876542 2689999999995 67
Q ss_pred eEeeccchhhhhCHHHHHHHHHHHHHhcccccc
Q psy16481 82 KLFEKKSIIDHMGEDKIQTFINYCLQHLSTVTL 114 (175)
Q Consensus 82 ~~i~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~ 114 (175)
++++...| +.+.+.++++++++++....+
T Consensus 78 ~~l~~~~l----~~~~~~~i~~~~~~~~~~~~~ 106 (272)
T PRK10530 78 KVLEADPL----PVQQALQVIEMLDEHQIHGLM 106 (272)
T ss_pred EEEEecCC----CHHHHHHHHHHHHhCCcEEEE
Confidence 88998888 999999999999887654333
No 7
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=99.92 E-value=1.8e-24 Score=170.69 Aligned_cols=162 Identities=15% Similarity=0.246 Sum_probs=120.1
Q ss_pred cceEEEEecCCCccCCCCCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEEecCCceeeeCCeE
Q psy16481 5 ANTICLFDVDGTLTQPRQKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLVAYKNGKL 83 (175)
Q Consensus 5 ~~kli~~DlDGTLl~~~~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~~NGa~i~~~~~~ 83 (175)
.+|+||+|||||||+++++++++++++ |++++++ ++|++||||++..+.+.+..+++.. ++||+||+.|+..++.
T Consensus 2 ~~kli~~DlDGTLl~~~~~i~~~~~~a-l~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~~~---~~I~~NGa~i~~~~~~ 77 (264)
T COG0561 2 MIKLLAFDLDGTLLDSNKTISPETKEA-LARLREKGVKVVLATGRPLPDVLSILEELGLDG---PLITFNGALIYNGGEL 77 (264)
T ss_pred CeeEEEEcCCCCccCCCCccCHHHHHH-HHHHHHCCCEEEEECCCChHHHHHHHHHcCCCc---cEEEeCCeEEecCCcE
Confidence 579999999999999999999999999 9999999 9999999999999999998876432 7999999999988999
Q ss_pred eeccchhhhhCHHHHHHHHHHHHHhcc-cccccccccceeeeccc-c---------ccc--------ch----hh-ccHH
Q psy16481 84 FEKKSIIDHMGEDKIQTFINYCLQHLS-TVTLPFKRGNFIEFRTG-L---------INS--------II----DH-MGED 139 (175)
Q Consensus 84 i~~~~l~~~l~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~-~---------~~~--------~~----~~-~~~~ 139 (175)
++...+ +.+.+.++++++.+... ...++..++.+...... . ... .. .+ ...+
T Consensus 78 i~~~~l----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (264)
T COG0561 78 LFQKPL----SREDVEELLELLEDFQGIALVLYTDDGIYLTKKRGTFAEARIGFANLSPVGREAAELEDNKIIALDKDHE 153 (264)
T ss_pred EeeecC----CHHHHHHHHHHHHhccCceEEEEeccceeeccCCCcccccccccccccccccchhhcCcceEEEEecChH
Confidence 998888 99999999999977633 22333333332221110 0 000 00 00 1134
Q ss_pred HHHHHHHHHHHhcCC--CCCceeecceE-EecCCcccC
Q psy16481 140 KIQTFINYCLQHLST--VTLPFKRGNFI-EFRTGLINH 174 (175)
Q Consensus 140 ~~~~~~~~l~~~~~~--~~~~~s~~~~i-i~~~Gv~K~ 174 (175)
...++.+.+.+.+++ ..++.|.+.++ ++|+|+||.
T Consensus 154 ~~~~~~~~l~~~~~~~~~~~~~s~~~~lei~~~g~~K~ 191 (264)
T COG0561 154 ILEELVEALRKRFPDLGLTVSSSGPISLDITPKGVSKG 191 (264)
T ss_pred hHHHHHHHHhhhccccceEEEEcCCceEEEecCCCchH
Confidence 455777788888874 44444455558 999999995
No 8
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=99.92 E-value=1.3e-24 Score=168.25 Aligned_cols=158 Identities=18% Similarity=0.252 Sum_probs=126.6
Q ss_pred EEEecCCCccCCCCCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEEecCCcee-eeCCeEeec
Q psy16481 9 CLFDVDGTLTQPRQKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLVA-YKNGKLFEK 86 (175)
Q Consensus 9 i~~DlDGTLl~~~~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~~NGa~i-~~~~~~i~~ 86 (175)
||+||||||+++++.|+++++++ |++|+++ +.|++||||++..+.++++.+++. .++|++|||.+ ...|+.++.
T Consensus 1 i~~DlDGTLl~~~~~i~~~~~~a-l~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~~---~~~I~~nGa~i~~~~~~~l~~ 76 (254)
T PF08282_consen 1 IFSDLDGTLLNSDGKISPETIEA-LKELQEKGIKLVIATGRSYSSIKRLLKELGID---DYFICSNGALIDDPKGKILYE 76 (254)
T ss_dssp EEEECCTTTCSTTSSSCHHHHHH-HHHHHHTTCEEEEECSSTHHHHHHHHHHTTHC---SEEEEGGGTEEEETTTEEEEE
T ss_pred cEEEECCceecCCCeeCHHHHHH-HHhhcccceEEEEEccCcccccccccccccch---hhhcccccceeeecccccchh
Confidence 79999999999999999999999 9999999 999999999999999999876542 48999999999 458999999
Q ss_pred cchhhhhCHHHHHHHHHHHHHhcccccccccccceeeeccc-c----------ccc-----c---------h-hhccHHH
Q psy16481 87 KSIIDHMGEDKIQTFINYCLQHLSTVTLPFKRGNFIEFRTG-L----------INS-----I---------I-DHMGEDK 140 (175)
Q Consensus 87 ~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~-~----------~~~-----~---------~-~~~~~~~ 140 (175)
..| +.+.+.++++++.++...+.++..+..|+..... . ... . . .....+.
T Consensus 77 ~~i----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ki~~~~~~~~ 152 (254)
T PF08282_consen 77 KPI----DSDDVKKILKYLKEHNISFFFYTDDDIYIYENKDEEELFFEHKFFNFKESIVSEDDLEDEEIFKILFFPDPED 152 (254)
T ss_dssp ESB-----HHHHHHHHHHHHHTTCEEEEEESSEEEESSTTCHHHHHHHHHHTSCEEEESHHHHHHCSSESEEEEESCHHH
T ss_pred hhe----eccchhheeehhhhcccccccccceeeecccccccchhhhhhcccccccccccccccccccceeeeccccchh
Confidence 888 9999999999999988665555555555543300 0 000 0 0 1224566
Q ss_pred HHHHHHHHHHhcCC-CCCceeecceE-EecCCcccC
Q psy16481 141 IQTFINYCLQHLST-VTLPFKRGNFI-EFRTGLINH 174 (175)
Q Consensus 141 ~~~~~~~l~~~~~~-~~~~~s~~~~i-i~~~Gv~K~ 174 (175)
..++.+.+.+.+++ .....+.++++ ++|+|+||.
T Consensus 153 ~~~l~~~l~~~~~~~~~~~~~~~~~lei~~~~vsK~ 188 (254)
T PF08282_consen 153 LEQLREELKKKFPNLIDVVRSSPYFLEITPKGVSKG 188 (254)
T ss_dssp HHHHHHHHHHHHTTTEEEEEEETTEEEEEETTSSHH
T ss_pred hhhhhhhhccccCcceeEEEecccceEEeeCCCCHH
Confidence 77889999999987 47788899999 999999995
No 9
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=99.92 E-value=2.8e-24 Score=168.80 Aligned_cols=159 Identities=18% Similarity=0.228 Sum_probs=118.9
Q ss_pred EEEEecCCCccCCCCCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEEecCCceeeeC-CeEee
Q psy16481 8 ICLFDVDGTLTQPRQKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLVAYKN-GKLFE 85 (175)
Q Consensus 8 li~~DlDGTLl~~~~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~~NGa~i~~~-~~~i~ 85 (175)
+||+||||||++++++++++++++ |++|+++ ++|++||||++..+.+.++.+++. .++|++|||.|+.. |+.++
T Consensus 1 li~~DlDGTLl~~~~~i~~~~~~~-i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~---~~~I~~NGa~i~~~~~~~i~ 76 (256)
T TIGR00099 1 LIFIDLDGTLLNDDHTISPSTKEA-LAKLREKGIKVVLATGRPYKEVKNILKELGLD---TPFITANGAAVIDDQGEILY 76 (256)
T ss_pred CEEEeCCCCCCCCCCccCHHHHHH-HHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCC---CCEEEcCCcEEECCCCCEEe
Confidence 589999999999999999999999 9999999 999999999999998888876532 27999999999964 68899
Q ss_pred ccchhhhhCHHHHHHHHHHHHHhcccccccccccceeeecc-c------------ccccc--------h-----hhccHH
Q psy16481 86 KKSIIDHMGEDKIQTFINYCLQHLSTVTLPFKRGNFIEFRT-G------------LINSI--------I-----DHMGED 139 (175)
Q Consensus 86 ~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~------------~~~~~--------~-----~~~~~~ 139 (175)
...| +.+.++++++++.+++..+.++..++.|+.... . ..... . .+...+
T Consensus 77 ~~~i----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (256)
T TIGR00099 77 KKPL----DLDLVEEILNFLKKHGLDVILYGDDSIYASKNDPEYFTIFKKFLGEPKLEVVDIQYLPDDILKILLLFLDPE 152 (256)
T ss_pred ecCC----CHHHHHHHHHHHHHcCcEEEEEeCCeEEecCCCcchhHHHHHhccCCcceeccchhhhcccceEEEEECCHH
Confidence 8888 999999999999887754444444444442110 0 00000 0 111233
Q ss_pred HHHHHHHHHHH-hcC-CCCCceeecceE-EecCCcccC
Q psy16481 140 KIQTFINYCLQ-HLS-TVTLPFKRGNFI-EFRTGLINH 174 (175)
Q Consensus 140 ~~~~~~~~l~~-~~~-~~~~~~s~~~~i-i~~~Gv~K~ 174 (175)
...++.+.+.+ .+. ++.++.+++.++ ++|+|+||.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~s~~~~leI~~~~~~K~ 190 (256)
T TIGR00099 153 DLDLLIEALNKLELEENVSVVSSGPYSIEITAKGVSKG 190 (256)
T ss_pred HHHHHHHHhhhhhhcCCEEEEEecCceEEecCCCCChH
Confidence 44456666653 444 477778888899 999999995
No 10
>PLN02887 hydrolase family protein
Probab=99.91 E-value=1.2e-23 Score=180.96 Aligned_cols=165 Identities=13% Similarity=0.092 Sum_probs=120.5
Q ss_pred cceEEEEecCCCccCCCCCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccc------cceEEecCCcee
Q psy16481 5 ANTICLFDVDGTLTQPRQKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQ------FDFVFPENGLVA 77 (175)
Q Consensus 5 ~~kli~~DlDGTLl~~~~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~------~~~~i~~NGa~i 77 (175)
++|+||+|||||||+++++|+++++++ |++++++ +.|++||||++..+.+.++.+++... ..++|++|||+|
T Consensus 307 ~iKLIa~DLDGTLLn~d~~Is~~t~eA-I~kl~ekGi~~vIATGR~~~~i~~~l~~L~l~~~~~~I~~~~p~I~~NGA~I 385 (580)
T PLN02887 307 KFSYIFCDMDGTLLNSKSQISETNAKA-LKEALSRGVKVVIATGKARPAVIDILKMVDLAGKDGIISESSPGVFLQGLLV 385 (580)
T ss_pred CccEEEEeCCCCCCCCCCccCHHHHHH-HHHHHHCCCeEEEEcCCCHHHHHHHHHHhCcccccceEeecccEEeecCeEE
Confidence 579999999999999999999999999 9999999 99999999999999888876543211 025678899999
Q ss_pred ee-CCeEeeccchhhhhCHHHHHHHHHHHHHhcccccccccccceeeeccc-------------cccc---c------h-
Q psy16481 78 YK-NGKLFEKKSIIDHMGEDKIQTFINYCLQHLSTVTLPFKRGNFIEFRTG-------------LINS---I------I- 133 (175)
Q Consensus 78 ~~-~~~~i~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~-------------~~~~---~------~- 133 (175)
++ +|+.+++..| +.+.+.++++++.+++..+.++..++.|...... .... . .
T Consensus 386 ~d~~g~~I~~~~L----~~e~v~eIi~~~~~~~i~~~~~~~d~~y~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~i 461 (580)
T PLN02887 386 YGRQGREIYRSNL----DQEVCREACLYSLEHKIPLIAFSQDRCLTLFDHPLVDSLHTIYHEPKAEIMSSVDQLLAAADI 461 (580)
T ss_pred EECCCcEEEEEeC----CHHHHHHHHHHHHHcCCeEEEEECCeEEEecCchHHHHHHHhhccccccccCCHHHhhcccCe
Confidence 95 7788898888 9999999999988876654444444444321100 0000 0 0
Q ss_pred ----hhccHHH-HHHHHHHHHHhcC-CCCCceeecceE-EecCCcccC
Q psy16481 134 ----DHMGEDK-IQTFINYCLQHLS-TVTLPFKRGNFI-EFRTGLINH 174 (175)
Q Consensus 134 ----~~~~~~~-~~~~~~~l~~~~~-~~~~~~s~~~~i-i~~~Gv~K~ 174 (175)
.+...+. ...+.+.+.+.+. .+.++.|.++++ ++|+|+||.
T Consensus 462 ~Ki~~~~~~e~~~~~l~~~l~~~~~~~~~v~~S~~~~lEI~p~gvSKG 509 (580)
T PLN02887 462 QKVIFLDTAEGVSSVLRPYWSEATGDRANVVQAQPDMLEIVPPGTSKG 509 (580)
T ss_pred eEEEEEcChHHHHHHHHHHHHHHhcCcEEEEEecCcEEEEecCCCCHH
Confidence 0011111 2345566666665 478888888899 999999995
No 11
>KOG3189|consensus
Probab=99.91 E-value=1.9e-23 Score=154.59 Aligned_cols=168 Identities=51% Similarity=0.854 Sum_probs=150.0
Q ss_pred cceEEEEecCCCccCCCCCCCHHHHHHHHHhhCCCeEEEEEcCCCHHHHHHHhcCCCcccccceEEecCCceeeeCCeEe
Q psy16481 5 ANTICLFDVDGTLTQPRQKAQNETLDFLLKKLKPLSHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLVAYKNGKLF 84 (175)
Q Consensus 5 ~~kli~~DlDGTLl~~~~~i~~~~~~~~l~~l~~~i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~~NGa~i~~~~~~i 84 (175)
..-|+.||.||||+.+...++++..+. |+.|+.++.+.++.|..+..+.++++.. +...+||..++||-+-|.+|+.+
T Consensus 10 ~~~l~lfdvdgtLt~~r~~~~~e~~~~-l~~lr~~v~ig~VggsDl~k~~eqlG~~-Vl~~fDY~F~ENGl~~yk~gk~~ 87 (252)
T KOG3189|consen 10 EETLCLFDVDGTLTPPRQKVTPEMLEF-LQKLRKKVTIGFVGGSDLSKQQEQLGDN-VLEEFDYVFSENGLVAYKGGKLL 87 (252)
T ss_pred CceEEEEecCCccccccccCCHHHHHH-HHHHhhheEEEEeecHHHHHHHHHhchh-HHhhhcccccCCCeeEeeCCcch
Confidence 346899999999999999999999999 9999888999999999999998888553 44678899999999999999999
Q ss_pred eccchhhhhCHHHHHHHHHHHHHhcccccccccccceeeecccccccch--------------hhccHHHHH-HHHHHHH
Q psy16481 85 EKKSIIDHMGEDKIQTFINYCLQHLSTVTLPFKRGNFIEFRTGLINSII--------------DHMGEDKIQ-TFINYCL 149 (175)
Q Consensus 85 ~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--------------~~~~~~~~~-~~~~~l~ 149 (175)
..+.+..+|.++.+++++.+|..|-..+.++...|+++|.+++|.+++| .++....++ ++++.++
T Consensus 88 ~~Qsi~~~LGee~~q~liNF~LrYlsdidlPiKRGtFiEFRNgMiNvsPIGR~cs~EER~eF~e~Dkk~~iR~K~v~~Lr 167 (252)
T KOG3189|consen 88 SKQSIINHLGEEKLQELINFCLRYLSDIDLPIKRGTFIEFRNGMINVSPIGRNCSQEERNEFEELDKKHKIREKFVEALR 167 (252)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHhcCCcccccceEEecCCceeccccccccCHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 9999999999999999999999999888899999999999999998887 234455666 8999999
Q ss_pred HhcCCCCCceeecceE---EecCCcccC
Q psy16481 150 QHLSTVTLPFKRGNFI---EFRTGLINH 174 (175)
Q Consensus 150 ~~~~~~~~~~s~~~~i---i~~~Gv~K~ 174 (175)
++|+++.+++|-|+.| +.|+||+|.
T Consensus 168 ~~F~~~gLtFSIGGQISfDvFP~GWDKt 195 (252)
T KOG3189|consen 168 EEFADYGLTFSIGGQISFDVFPKGWDKT 195 (252)
T ss_pred HHhcccCeeEEECCeEEEeecCCCcchh
Confidence 9999999999988887 889999994
No 12
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.89 E-value=1.7e-22 Score=160.18 Aligned_cols=100 Identities=15% Similarity=0.135 Sum_probs=85.4
Q ss_pred CCCcceEEEEecCCCccCCCCCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEEecCCceeeeC
Q psy16481 2 TCRANTICLFDVDGTLTQPRQKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLVAYKN 80 (175)
Q Consensus 2 ~~~~~kli~~DlDGTLl~~~~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~~NGa~i~~~ 80 (175)
|-..+|+||+|||||||++++.++++++++ |++|+++ ++|++||||++..+.+.++.+++. ..++|++|||.|+..
T Consensus 3 ~~~~~~lI~~DlDGTLL~~~~~i~~~~~~a-i~~l~~~Gi~~viaTGR~~~~i~~~~~~l~~~--~~~~I~~NGa~I~~~ 79 (271)
T PRK03669 3 SLQDPLLIFTDLDGTLLDSHTYDWQPAAPW-LTRLREAQVPVILCSSKTAAEMLPLQQTLGLQ--GLPLIAENGAVIQLD 79 (271)
T ss_pred CcCCCeEEEEeCccCCcCCCCcCcHHHHHH-HHHHHHcCCeEEEEcCCCHHHHHHHHHHhCCC--CCcEEEeCCCEEEec
Confidence 557899999999999999988999999999 9999999 999999999999999888887542 137999999999963
Q ss_pred C--e-----EeeccchhhhhCHHHHHHHHHHHHHh
Q psy16481 81 G--K-----LFEKKSIIDHMGEDKIQTFINYCLQH 108 (175)
Q Consensus 81 ~--~-----~i~~~~l~~~l~~~~~~~i~~~~~~~ 108 (175)
+ + .++...+ +.+.+.+++++++++
T Consensus 80 ~~~~~~~~~~~~~~~l----~~~~~~~i~~~~~~~ 110 (271)
T PRK03669 80 EQWQDHPDFPRIISGI----SHGEIRQVLNTLREK 110 (271)
T ss_pred CcccCCCCceEeecCC----CHHHHHHHHHHHHHh
Confidence 2 1 3555666 999999999998876
No 13
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=99.86 E-value=4.7e-21 Score=147.97 Aligned_cols=94 Identities=17% Similarity=0.151 Sum_probs=77.8
Q ss_pred cceEEEEecCCCccCCCCCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEEecCCceeee--CC
Q psy16481 5 ANTICLFDVDGTLTQPRQKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLVAYK--NG 81 (175)
Q Consensus 5 ~~kli~~DlDGTLl~~~~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~~NGa~i~~--~~ 81 (175)
.+|+|++||||||+++++.++++++++ |++++++ ++|++||||++..+.+.+..+++. .++|++|||.++. ++
T Consensus 2 ~~kli~~DlDGTLl~~~~~i~~~~~~a-l~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~---~~~i~~nGa~i~~~~~~ 77 (230)
T PRK01158 2 KIKAIAIDIDGTITDKDRRLSLKAVEA-IRKAEKLGIPVILATGNVLCFARAAAKLIGTS---GPVIAENGGVISVGFDG 77 (230)
T ss_pred ceeEEEEecCCCcCCCCCccCHHHHHH-HHHHHHCCCEEEEEcCCchHHHHHHHHHhCCC---CcEEEecCeEEEEcCCC
Confidence 379999999999999999999999999 9999999 999999999999998877776542 3789999999986 37
Q ss_pred eEeeccchhhhhCHHHHHHHHHHHHHh
Q psy16481 82 KLFEKKSIIDHMGEDKIQTFINYCLQH 108 (175)
Q Consensus 82 ~~i~~~~l~~~l~~~~~~~i~~~~~~~ 108 (175)
+.++...+ + .+.++++.+.++
T Consensus 78 ~~~~~~~~----~--~~~~~~~~~~~~ 98 (230)
T PRK01158 78 KRIFLGDI----E--ECEKAYSELKKR 98 (230)
T ss_pred CEEEEcch----H--HHHHHHHHHHHh
Confidence 77776665 3 355666666554
No 14
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=99.83 E-value=1.9e-19 Score=142.50 Aligned_cols=155 Identities=15% Similarity=0.058 Sum_probs=105.6
Q ss_pred CcceEEEEecCCCccCC-----CCCCCHHHHHHHHHhhCC-C-eEEEEEcCCCHHHHHHHhcCCCcccccceEEecCCce
Q psy16481 4 RANTICLFDVDGTLTQP-----RQKAQNETLDFLLKKLKP-L-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLV 76 (175)
Q Consensus 4 ~~~kli~~DlDGTLl~~-----~~~i~~~~~~~~l~~l~~-~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~~NGa~ 76 (175)
....+|++|+||||++. +..++++++++ |++|++ . +.|+|||||++..+.++++.++ .+++++||+.
T Consensus 12 ~~~~li~~D~DGTLl~~~~~p~~~~i~~~~~~~-L~~L~~~~g~~v~i~SGR~~~~~~~~~~~~~-----~~~i~~nGa~ 85 (266)
T PRK10187 12 SANYAWFFDLDGTLAEIKPHPDQVVVPDNILQG-LQLLATANDGALALISGRSMVELDALAKPYR-----FPLAGVHGAE 85 (266)
T ss_pred CCCEEEEEecCCCCCCCCCCcccccCCHHHHHH-HHHHHhCCCCcEEEEeCCCHHHHHHhcCccc-----ceEEEeCCCe
Confidence 45689999999999994 56999999999 999998 5 9999999999999998887653 2588999999
Q ss_pred eeeCCeEeeccchhhhhCHHHHHHHHHHHHHhcccccccccccceeeecccccccch-hhc-cHHHHHHHHHHHHHhcCC
Q psy16481 77 AYKNGKLFEKKSIIDHMGEDKIQTFINYCLQHLSTVTLPFKRGNFIEFRTGLINSII-DHM-GEDKIQTFINYCLQHLST 154 (175)
Q Consensus 77 i~~~~~~i~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~-~~~~~~~~~~~l~~~~~~ 154 (175)
++..+..++...+ +.+.++++.+.+++... ...|.+++.+.....+.. ... ..+...++.+.+.+.++.
T Consensus 86 i~~~~~~~~~~~l----~~~~~~~i~~~l~~~~~-----~~pg~~ve~k~~~~~~h~r~~~~~~~~~~~l~~~i~~~~~~ 156 (266)
T PRK10187 86 RRDINGKTHIVHL----PDAIARDISVQLHTALA-----QLPGAELEAKGMAFALHYRQAPQHEDALLALAQRITQIWPQ 156 (266)
T ss_pred eecCCCCeeeccC----ChhHHHHHHHHHHHHhc-----cCCCcEEEeCCcEEEEECCCCCccHHHHHHHHHHHHhhCCc
Confidence 9853322333455 77878888777765421 123444444322111111 111 123344666677766664
Q ss_pred CCCceeecceE-EecCCcccC
Q psy16481 155 VTLPFKRGNFI-EFRTGLINH 174 (175)
Q Consensus 155 ~~~~~s~~~~i-i~~~Gv~K~ 174 (175)
+. +.++..++ +.|+|+||.
T Consensus 157 ~~-~~~g~~~lEi~p~g~~Kg 176 (266)
T PRK10187 157 LA-LQPGKCVVEIKPRGTNKG 176 (266)
T ss_pred eE-EeCCCEEEEeeCCCCCHH
Confidence 33 34566777 889999995
No 15
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=99.83 E-value=5.9e-20 Score=141.27 Aligned_cols=94 Identities=15% Similarity=0.081 Sum_probs=76.6
Q ss_pred EEEEecCCCccCCCCCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEEecCCceeee-C-CeE-
Q psy16481 8 ICLFDVDGTLTQPRQKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLVAYK-N-GKL- 83 (175)
Q Consensus 8 li~~DlDGTLl~~~~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~~NGa~i~~-~-~~~- 83 (175)
+||+|||||||++++.+++.++++ |++|+++ +.|++||||++..+...++.+++. ..++||+|||.|+. . ++.
T Consensus 1 ~i~~DlDGTLL~~~~~~~~~~~~~-l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~--~~~~I~~NGa~i~~~~~~~~~ 77 (221)
T TIGR02463 1 WVFSDLDGTLLDSHSYDWQPAAPW-LTRLQEAGIPVILCTSKTAAEVEYLQKALGLT--GDPYIAENGAAIHLEELWREE 77 (221)
T ss_pred CEEEeCCCCCcCCCCCCcHHHHHH-HHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC--CCcEEEeCCcEEEcCcccccC
Confidence 589999999999887677779999 9999999 999999999999998888876542 13799999999995 2 332
Q ss_pred ----eeccchhhhhCHHHHHHHHHHHHHh
Q psy16481 84 ----FEKKSIIDHMGEDKIQTFINYCLQH 108 (175)
Q Consensus 84 ----i~~~~l~~~l~~~~~~~i~~~~~~~ 108 (175)
++...+ +.+.+.++++++.+.
T Consensus 78 ~~~~~~~~~~----~~~~~~~i~~~~~~~ 102 (221)
T TIGR02463 78 PGYPRIILGI----SYGIIRLVLETLSEE 102 (221)
T ss_pred CCceEEecCC----CHHHHHHHHHHHHHH
Confidence 244556 888899998876654
No 16
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=99.82 E-value=2.9e-19 Score=154.46 Aligned_cols=98 Identities=22% Similarity=0.238 Sum_probs=84.7
Q ss_pred CCcceEEEEecCCCccCCCCCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEEecCCceeee-C
Q psy16481 3 CRANTICLFDVDGTLTQPRQKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLVAYK-N 80 (175)
Q Consensus 3 ~~~~kli~~DlDGTLl~~~~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~~NGa~i~~-~ 80 (175)
...+|+||+||||||+++++.++++++++ |++|+++ +.|++||||++..+..+++.+++. +++|++|||.|+. +
T Consensus 413 ~~~~KLIfsDLDGTLLd~d~~i~~~t~eA-L~~L~ekGI~~VIATGRs~~~i~~l~~~Lgl~---~~~I~eNGA~I~~~~ 488 (694)
T PRK14502 413 GQFKKIVYTDLDGTLLNPLTYSYSTALDA-LRLLKDKELPLVFCSAKTMGEQDLYRNELGIK---DPFITENGGAIFIPK 488 (694)
T ss_pred CceeeEEEEECcCCCcCCCCccCHHHHHH-HHHHHHcCCeEEEEeCCCHHHHHHHHHHcCCC---CeEEEcCCCEEEECC
Confidence 44789999999999999988888899999 9999999 999999999999998888776532 3799999999995 2
Q ss_pred --------------CeEeeccchhhhhCHHHHHHHHHHHHHh
Q psy16481 81 --------------GKLFEKKSIIDHMGEDKIQTFINYCLQH 108 (175)
Q Consensus 81 --------------~~~i~~~~l~~~l~~~~~~~i~~~~~~~ 108 (175)
++.+++..+ +.+.++++++.+++.
T Consensus 489 ~~~~~~~~~~~~~~~~iI~~~~l----~~e~i~~IL~~lke~ 526 (694)
T PRK14502 489 DYFRLPFAYDRVAGNYLVIELGM----AYKDIRHILKKALAE 526 (694)
T ss_pred CcccccccccccCCCeEEEEcCC----CHHHHHHHHHHHHHh
Confidence 346777777 999999999988773
No 17
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=99.82 E-value=1.8e-19 Score=139.47 Aligned_cols=91 Identities=20% Similarity=0.136 Sum_probs=78.4
Q ss_pred EEEEecCCCccCCCCCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEEecCCceeee-C-----
Q psy16481 8 ICLFDVDGTLTQPRQKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLVAYK-N----- 80 (175)
Q Consensus 8 li~~DlDGTLl~~~~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~~NGa~i~~-~----- 80 (175)
+|+|||||||++++ .++++++++ |++|+++ +.|++||||++..+...+..+++. +++|++|||.|+. .
T Consensus 1 li~~DlDGTLl~~~-~~~~~~~~a-i~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~~---~~~I~~NGa~I~~~~~~~~~ 75 (225)
T TIGR02461 1 VIFTDLDGTLLPPG-YEPGPAREA-LEELKDLGFPIVFVSSKTRAEQEYYREELGVE---PPFIVENGGAIFIPRGYFPF 75 (225)
T ss_pred CEEEeCCCCCcCCC-CCchHHHHH-HHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCC---CcEEEcCCcEEEecCccccc
Confidence 58999999999954 466789999 9999999 999999999999998888776542 3799999999995 2
Q ss_pred ---------CeEeeccchhhhhCHHHHHHHHHHHHH
Q psy16481 81 ---------GKLFEKKSIIDHMGEDKIQTFINYCLQ 107 (175)
Q Consensus 81 ---------~~~i~~~~l~~~l~~~~~~~i~~~~~~ 107 (175)
++.+++..+ +.+.++++++.+.+
T Consensus 76 ~~~~~~~~~~~~i~~~~l----~~~~~~~il~~~~~ 107 (225)
T TIGR02461 76 PVGAGREVGNYEVIELGK----PVAKIRAALKEAEN 107 (225)
T ss_pred cccccccCCCeEEEEcCC----CHHHHHHHHHHHHH
Confidence 556888888 99999999998887
No 18
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=99.80 E-value=1e-18 Score=132.72 Aligned_cols=155 Identities=17% Similarity=0.230 Sum_probs=97.0
Q ss_pred EEEEecCCCccCCC-CCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEEecCCceeeeCCeEee
Q psy16481 8 ICLFDVDGTLTQPR-QKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLVAYKNGKLFE 85 (175)
Q Consensus 8 li~~DlDGTLl~~~-~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~~NGa~i~~~~~~i~ 85 (175)
+|++|+||||++++ .+++++++++ |++|+++ +.|++||||++..+..+++.++ .++|++||+.++..++.++
T Consensus 1 li~~D~DgTL~~~~~~~~~~~~~~~-l~~l~~~g~~~~i~TGR~~~~~~~~~~~~~-----~~~i~~nGa~i~~~~~~~~ 74 (204)
T TIGR01484 1 LLFFDLDGTLLDPNAHELSPETIEA-LERLREAGVKVVLVTGRSLAEIKELLKQLP-----LPLIAENGALIFYPGEILY 74 (204)
T ss_pred CEEEeCcCCCcCCCCCcCCHHHHHH-HHHHHHCCCEEEEECCCCHHHHHHHHHhCC-----CCEEECCCcEEEECCEEEE
Confidence 58999999999987 7899999999 9999999 9999999999999988887632 3799999999998776665
Q ss_pred ccchhhhhCHHHHHHHHHHHHHhcccccccc--cccceeeecccccccch-hh-ccHHHHHHHHHHHHHh---cCCCCCc
Q psy16481 86 KKSIIDHMGEDKIQTFINYCLQHLSTVTLPF--KRGNFIEFRTGLINSII-DH-MGEDKIQTFINYCLQH---LSTVTLP 158 (175)
Q Consensus 86 ~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~-~~-~~~~~~~~~~~~l~~~---~~~~~~~ 158 (175)
.. +.+.++.++++..+....+..+. ..+..++.+.....+.. .. ........+.+.+... ++++.+.
T Consensus 75 ~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (204)
T TIGR01484 75 IE------PSDVFEEILGIKEEIGAELKSLSEHYVGTFIEDKAIAVAIHYVGAELGQELDSKMRERLEKIGRNDLELEAI 148 (204)
T ss_pred Ec------ccccHHHHHHhhhhcCceeeeeccccccceeecccceeeEEEeccchhhHHHHHHHHHHHhhccccCcEEEE
Confidence 43 23334555444432211111110 11112222111111110 00 0111122333444332 2346666
Q ss_pred eeecceE-EecCCcccC
Q psy16481 159 FKRGNFI-EFRTGLINH 174 (175)
Q Consensus 159 ~s~~~~i-i~~~Gv~K~ 174 (175)
.|+++++ ++|+|++|.
T Consensus 149 ~s~~~~~ev~p~~~~K~ 165 (204)
T TIGR01484 149 YVGKTDLEVLPAGVDKG 165 (204)
T ss_pred EecCCEEEEecCCCChH
Confidence 6788889 999999994
No 19
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=99.79 E-value=7.8e-19 Score=134.64 Aligned_cols=73 Identities=22% Similarity=0.290 Sum_probs=64.6
Q ss_pred ceEEEEecCCCccCCCCCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEEecCCceeeeCCe
Q psy16481 6 NTICLFDVDGTLTQPRQKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLVAYKNGK 82 (175)
Q Consensus 6 ~kli~~DlDGTLl~~~~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~~NGa~i~~~~~ 82 (175)
+|+|++||||||+++++.+++++.++ |++|+++ +.|++||||++..+.+++..+++. .++|++||++|+..++
T Consensus 1 ik~v~~DlDGTLl~~~~~i~~~~~~~-i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~---~~~i~~NGa~i~~~~~ 74 (215)
T TIGR01487 1 IKLVAIDIDGTLTEPNRMISERAIEA-IRKAEKKGIPVSLVTGNTVPFARALAVLIGTS---GPVVAENGGVIFYNKE 74 (215)
T ss_pred CcEEEEecCCCcCCCCcccCHHHHHH-HHHHHHCCCEEEEEcCCcchhHHHHHHHhCCC---CcEEEccCcEEEeCCC
Confidence 58999999999999999999999999 9999999 999999999999998887776432 2789999999997433
No 20
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=99.78 E-value=2.8e-18 Score=134.89 Aligned_cols=92 Identities=21% Similarity=0.178 Sum_probs=76.2
Q ss_pred EEEEecCCCccCCCCCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEEecCCceeeeC-C-eE-
Q psy16481 8 ICLFDVDGTLTQPRQKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLVAYKN-G-KL- 83 (175)
Q Consensus 8 li~~DlDGTLl~~~~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~~NGa~i~~~-~-~~- 83 (175)
+|++||||||+++++.+.+.++++ |++|+++ +.|++||||++..+...++.+++. +++||+|||.|+.. + +.
T Consensus 1 li~~DlDGTll~~~~~~~~~~~~~-i~~l~~~g~~~~~~TgR~~~~~~~~~~~~~~~---~~~I~~NGa~i~~~~~~~~~ 76 (256)
T TIGR01486 1 WIFTDLDGTLLDPHGYDWGPAKEV-LERLQELGIPVIPCTSKTAAEVEYLRKELGLE---DPFIVENGGAIYGPRGWFTE 76 (256)
T ss_pred CEEEcCCCCCcCCCCcCchHHHHH-HHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC---CcEEEcCCeEEEeCCCcccC
Confidence 589999999999888444579999 9999999 999999999999998888887542 47999999999963 3 22
Q ss_pred ----eeccchhhhhCHHHHHHHHHHHHH
Q psy16481 84 ----FEKKSIIDHMGEDKIQTFINYCLQ 107 (175)
Q Consensus 84 ----i~~~~l~~~l~~~~~~~i~~~~~~ 107 (175)
++...+ +.+.++++++.+.+
T Consensus 77 ~~~~~~~~~i----~~~~~~~il~~~~~ 100 (256)
T TIGR01486 77 PEYPVIALGI----PYEKIRARLEELSE 100 (256)
T ss_pred CCeEEEEcCC----CHHHHHHHHHHHHH
Confidence 566677 99999999986544
No 21
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=99.77 E-value=2.8e-18 Score=132.00 Aligned_cols=77 Identities=22% Similarity=0.221 Sum_probs=65.6
Q ss_pred EEEecCCCccCCCCCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEEecCCceeeeCC--eEee
Q psy16481 9 CLFDVDGTLTQPRQKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLVAYKNG--KLFE 85 (175)
Q Consensus 9 i~~DlDGTLl~~~~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~~NGa~i~~~~--~~i~ 85 (175)
|+|||||||+++++.++++++++ |++++++ +.|++||||++..+.+++..+++ ..++|++||+.|+..+ +.++
T Consensus 1 i~~DlDGTLl~~~~~i~~~~~~a-l~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~~---~~~~i~~nGa~i~~~~~~~~~~ 76 (225)
T TIGR01482 1 IASDIDGTLTDPNRAINESALEA-IRKAESVGIPVVLVTGNSVQFARALAKLIGT---PDPVIAENGGEISYNEGMDDIF 76 (225)
T ss_pred CeEeccCccCCCCcccCHHHHHH-HHHHHHCCCEEEEEcCCchHHHHHHHHHhCC---CCeEEEecCcEEEeCCCCceEE
Confidence 68999999999999999999999 9999999 99999999999999888777643 2479999999999643 4556
Q ss_pred ccch
Q psy16481 86 KKSI 89 (175)
Q Consensus 86 ~~~l 89 (175)
...+
T Consensus 77 ~~~~ 80 (225)
T TIGR01482 77 LAYL 80 (225)
T ss_pred eccc
Confidence 5555
No 22
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=99.76 E-value=6.7e-18 Score=132.31 Aligned_cols=73 Identities=21% Similarity=0.190 Sum_probs=62.2
Q ss_pred eEEEEecCCCccC---CCCCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEEecCCceeeeCC
Q psy16481 7 TICLFDVDGTLTQ---PRQKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLVAYKNG 81 (175)
Q Consensus 7 kli~~DlDGTLl~---~~~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~~NGa~i~~~~ 81 (175)
.+|++|||||||+ .++++++++.+. +++++++ +.|++||||++.++..+...+++. ..+++|++||+.|+..|
T Consensus 2 ~li~tDlDGTLl~~~~~~~~~~~~~~~~-i~~~~~~gi~fv~aTGR~~~~~~~~~~~~~~~-~p~~~I~~NGa~I~~~~ 78 (249)
T TIGR01485 2 LLLVSDLDNTLVDHTDGDNQALLRLNAL-LEDHRGEDSLLVYSTGRSPHSYKELQKQKPLL-TPDIWVTSVGSEIYYGG 78 (249)
T ss_pred eEEEEcCCCcCcCCCCCChHHHHHHHHH-HHHhhccCceEEEEcCCCHHHHHHHHhcCCCC-CCCEEEEcCCceEEeCC
Confidence 5899999999997 667899999999 9999999 999999999999998887655432 23368999999999755
No 23
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.76 E-value=4.3e-18 Score=135.12 Aligned_cols=95 Identities=16% Similarity=0.118 Sum_probs=81.5
Q ss_pred ceEEEEecCCCccCCCCCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEEecCCceeeeC-C--
Q psy16481 6 NTICLFDVDGTLTQPRQKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLVAYKN-G-- 81 (175)
Q Consensus 6 ~kli~~DlDGTLl~~~~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~~NGa~i~~~-~-- 81 (175)
+|+||+|||||||++++.++++++++ |++|+++ ++|++||||++..+...++.+++. .++|+.||++|+.. +
T Consensus 4 ~kli~~DlDGTLl~~~~~~~~~~~~a-i~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l~---~~~i~~nGa~i~~~~~~~ 79 (273)
T PRK00192 4 KLLVFTDLDGTLLDHHTYSYEPAKPA-LKALKEKGIPVIPCTSKTAAEVEVLRKELGLE---DPFIVENGAAIYIPKNYF 79 (273)
T ss_pred ceEEEEcCcccCcCCCCcCcHHHHHH-HHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC---CCEEEEcCcEEEeccccc
Confidence 79999999999999888899999999 9999999 999999999999998888877543 37899999999852 2
Q ss_pred ------------eEeeccchhhhhCHHHHHHHHHHHHHh
Q psy16481 82 ------------KLFEKKSIIDHMGEDKIQTFINYCLQH 108 (175)
Q Consensus 82 ------------~~i~~~~l~~~l~~~~~~~i~~~~~~~ 108 (175)
+.++...+ +.+.+.++++.+.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~~~~~~~ 114 (273)
T PRK00192 80 PFQPDGERLKGDYWVIELGP----PYEELREILDEISDE 114 (273)
T ss_pred ccCCccccccCCceEEEcCC----CHHHHHHHHHHHHHH
Confidence 46777777 899999998876553
No 24
>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5.4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2I55_B 2I54_C 3F9R_A 2FUE_A 2FUC_A 2AMY_A 2Q4R_A.
Probab=99.73 E-value=3.3e-17 Score=124.23 Aligned_cols=145 Identities=43% Similarity=0.761 Sum_probs=110.7
Q ss_pred HHHHHHhhCCCeEEEEEcCCCHHHHHHHhcCCCcccccceEEecCCceeeeCCeEeeccchhhhhCHHHHHHHHHHHHHh
Q psy16481 29 LDFLLKKLKPLSHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLVAYKNGKLFEKKSIIDHMGEDKIQTFINYCLQH 108 (175)
Q Consensus 29 ~~~~l~~l~~~i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~~NGa~i~~~~~~i~~~~l~~~l~~~~~~~i~~~~~~~ 108 (175)
.+. |++|++++.++++||..+..+.+++....+...++|+.++||...|..|+.+..+.+.+.++++..+++++++.++
T Consensus 2 ~~~-L~~L~~~~~vgvVgGsd~~k~~eQl~~~~~~~~fdy~f~enG~~~y~~~~~~~~~~~~~~lgee~~~~~in~~l~~ 80 (220)
T PF03332_consen 2 AEL-LQKLRKKVPVGVVGGSDLPKIQEQLGGDDVLDNFDYVFPENGLVAYKNGELIWSQSIAEFLGEEKLQKLINFCLRY 80 (220)
T ss_dssp HHH-HHHHHTTSEEEEEESS-HHHHHHHHSTTTHHHH-SEEEEGGGTEEEETTEEEEE--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHhcCeEEEEcchhHHHHHHHHcccchHhhCCeeecCCCCeEEECCCchhhHhHHHHcCHHHHHHHHHHHHHH
Confidence 455 8899988999999999999999999522244567899999999999999988888888999999999999999998
Q ss_pred cccccccccccceeeecccccccch--------------hhccHHHHH-HHHHHHHHhcCCCCCceeecc--eE-EecCC
Q psy16481 109 LSTVTLPFKRGNFIEFRTGLINSII--------------DHMGEDKIQ-TFINYCLQHLSTVTLPFKRGN--FI-EFRTG 170 (175)
Q Consensus 109 ~~~~~~~~~~~~~i~~~~~~~~~~~--------------~~~~~~~~~-~~~~~l~~~~~~~~~~~s~~~--~i-i~~~G 170 (175)
-..+.++...|+++|.|.++++++| .|++...++ ++++.|++.||++.+..|.|+ .+ +.|+|
T Consensus 81 ~~~l~lp~krGtfIE~R~gmIn~SpiGr~a~~eer~~f~~~D~~~~iR~~~v~~L~~~f~d~~L~~siGGqiSiDvfp~G 160 (220)
T PF03332_consen 81 ISDLDLPVKRGTFIEFRGGMINFSPIGRNASQEERDEFDEYDKKHKIREKLVEALKKEFPDFGLTFSIGGQISIDVFPKG 160 (220)
T ss_dssp HHT---S---S-SEEEESSEEEE-SS-TTS-HHHHHHHHHHHHHHTHHHHHHHHHHHHTCCCSEEEEEETTTEEEEEETT
T ss_pred HHhCCCCccCCCceeecCCcEEECcccCcCCHHHHHhhhhcChhhhHHHHHHHHHHHHCCCCceEEecCCceEEccccCC
Confidence 8777777889999999999988875 234555666 799999999999777666555 45 99999
Q ss_pred cccC
Q psy16481 171 LINH 174 (175)
Q Consensus 171 v~K~ 174 (175)
|+|.
T Consensus 161 wDKt 164 (220)
T PF03332_consen 161 WDKT 164 (220)
T ss_dssp -SGG
T ss_pred ccHH
Confidence 9995
No 25
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=99.71 E-value=5.7e-17 Score=126.02 Aligned_cols=68 Identities=15% Similarity=0.194 Sum_probs=57.7
Q ss_pred EEEEecCCCccCCCCCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEEecCCceeee
Q psy16481 8 ICLFDVDGTLTQPRQKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLVAYK 79 (175)
Q Consensus 8 li~~DlDGTLl~~~~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~~NGa~i~~ 79 (175)
+|++|||||||++++.+++.+ ++ ++ ++++ +.|++||||++.++.+.++.+++. ..+++|++||+.|+.
T Consensus 1 li~~DlDgTLl~~~~~~~~~~-~~-~~-~~~~gi~~viaTGR~~~~v~~~~~~l~l~-~~~~~I~~nGa~i~~ 69 (236)
T TIGR02471 1 LIITDLDNTLLGDDEGLASFV-EL-LR-GSGDAVGFGIATGRSVESAKSRYAKLNLP-SPDVLIARVGTEIYY 69 (236)
T ss_pred CeEEeccccccCCHHHHHHHH-HH-HH-hcCCCceEEEEeCCCHHHHHHHHHhCCCC-CCCEEEECCCceEEe
Confidence 589999999999888898876 66 77 6777 999999999999999999876543 234699999999875
No 26
>PLN02382 probable sucrose-phosphatase
Probab=99.70 E-value=2.8e-16 Score=131.37 Aligned_cols=79 Identities=14% Similarity=0.065 Sum_probs=62.6
Q ss_pred CCCcceEEEEecCCCccCC--CCCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEEecCCceee
Q psy16481 2 TCRANTICLFDVDGTLTQP--RQKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLVAY 78 (175)
Q Consensus 2 ~~~~~kli~~DlDGTLl~~--~~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~~NGa~i~ 78 (175)
+..++-||++|||||||++ ++.+++.++.++++++.++ +.|++||||++..+.++.+.+++. ..+++|++||+.|+
T Consensus 5 ~~~~~~lI~sDLDGTLL~~~~~~~~s~~~~~~l~~~~~~~gi~fv~aTGR~~~~~~~l~~~~~l~-~p~~~I~~nGt~I~ 83 (413)
T PLN02382 5 SGSPRLMIVSDLDHTMVDHHDPENLSLLRFNALWEAEYRHDSLLVFSTGRSPTLYKELRKEKPLL-TPDITIMSVGTEIA 83 (413)
T ss_pred cCCCCEEEEEcCCCcCcCCCCccchhHHHHHHHHHHhhcCCeeEEEEcCCCHHHHHHHHHhCCCC-CCCEEEEcCCcEEE
Confidence 3456789999999999998 4489988888834999998 999999999988877766555432 22368899999998
Q ss_pred eCC
Q psy16481 79 KNG 81 (175)
Q Consensus 79 ~~~ 81 (175)
..+
T Consensus 84 ~~~ 86 (413)
T PLN02382 84 YGE 86 (413)
T ss_pred eCC
Confidence 644
No 27
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=99.69 E-value=5.8e-17 Score=128.29 Aligned_cols=70 Identities=16% Similarity=0.121 Sum_probs=64.0
Q ss_pred ceEEEEecCCCccCCCCCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEEecCCceeee
Q psy16481 6 NTICLFDVDGTLTQPRQKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLVAYK 79 (175)
Q Consensus 6 ~kli~~DlDGTLl~~~~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~~NGa~i~~ 79 (175)
.|+||+|||||||++++.+++.++++ |++|+++ +.|++||||++.++..+.+.+++. +++|++||+.|+.
T Consensus 1 ~KLIftDLDGTLLd~~~~~~~~a~~a-L~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~---~p~I~eNGA~I~~ 71 (302)
T PRK12702 1 MRLVLSSLDGSLLDLEFNSYGAARQA-LAALERRSIPLVLYSLRTRAQLEHLCRQLRLE---HPFICEDGSAIYV 71 (302)
T ss_pred CcEEEEeCCCCCcCCCCcCCHHHHHH-HHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCC---CeEEEeCCcEEEE
Confidence 48999999999999988899999999 9999999 999999999999998888887643 3899999999995
No 28
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.67 E-value=1.4e-15 Score=135.31 Aligned_cols=153 Identities=20% Similarity=0.295 Sum_probs=97.4
Q ss_pred CcceEEEEecCCCccCCC-----CCCCHHHHHHHHHhhCC-C-eEEEEEcCCCHHHHHHHhcCCCcccccceEEecCCce
Q psy16481 4 RANTICLFDVDGTLTQPR-----QKAQNETLDFLLKKLKP-L-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLV 76 (175)
Q Consensus 4 ~~~kli~~DlDGTLl~~~-----~~i~~~~~~~~l~~l~~-~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~~NGa~ 76 (175)
+++|+|++|+||||++.. ..++++++++ |++|.+ . +.|+++|||++..+.++++..+ .++|++||+.
T Consensus 490 ~~~rLi~~D~DGTL~~~~~~~~~~~~~~~~~~~-L~~L~~d~g~~V~ivSGR~~~~l~~~~~~~~-----l~liaenG~~ 563 (726)
T PRK14501 490 ASRRLLLLDYDGTLVPFAPDPELAVPDKELRDL-LRRLAADPNTDVAIISGRDRDTLERWFGDLP-----IHLVAEHGAW 563 (726)
T ss_pred ccceEEEEecCccccCCCCCcccCCCCHHHHHH-HHHHHcCCCCeEEEEeCCCHHHHHHHhCCCC-----eEEEEeCCEE
Confidence 467999999999999832 3688999999 999999 4 9999999999999999998753 2699999999
Q ss_pred eeeCCeEeeccchhhhhC---HHHHHHHHHHHHHhcccccccccccceeeecccccccc-----hhhccHHHHHHHHHHH
Q psy16481 77 AYKNGKLFEKKSIIDHMG---EDKIQTFINYCLQHLSTVTLPFKRGNFIEFRTGLINSI-----IDHMGEDKIQTFINYC 148 (175)
Q Consensus 77 i~~~~~~i~~~~l~~~l~---~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~l 148 (175)
++..++.+..... .+ .+.+.++++.+.+. ..|.+++.+.....+. +.+ ......++.+.+
T Consensus 564 i~~~~~~w~~~~~---~~~~w~~~v~~il~~~~~~--------~~gs~ie~k~~~l~~~~r~~d~~~-~~~~a~~l~~~l 631 (726)
T PRK14501 564 SRAPGGEWQLLEP---VATEWKDAVRPILEEFVDR--------TPGSFIEEKEASLAWHYRNADPEL-GEARANELILAL 631 (726)
T ss_pred EeCCCCceEECCC---cchhHHHHHHHHHHHHHhc--------CCCcEEEEcceEEEEEccCCCHHH-HHHHHHHHHHHH
Confidence 9864443322111 02 23344444333322 2345555432221121 111 112233455666
Q ss_pred HHhcCCCCC-ceeecceE-EecCCcccC
Q psy16481 149 LQHLSTVTL-PFKRGNFI-EFRTGLINH 174 (175)
Q Consensus 149 ~~~~~~~~~-~~s~~~~i-i~~~Gv~K~ 174 (175)
...+.+..+ ..+++.++ +.|+|+||.
T Consensus 632 ~~~~~~~~~~v~~g~~~veV~p~~vnKG 659 (726)
T PRK14501 632 SSLLSNAPLEVLRGNKVVEVRPAGVNKG 659 (726)
T ss_pred HHHhcCCCeEEEECCeEEEEEECCCCHH
Confidence 555544223 34567778 999999995
No 29
>PLN03017 trehalose-phosphatase
Probab=99.62 E-value=1.4e-14 Score=118.29 Aligned_cols=70 Identities=23% Similarity=0.261 Sum_probs=58.4
Q ss_pred CcceEEEEecCCCcc---C-CCC-CCCHHHHHHHHHhhCCCeEEEEEcCCCHHHHHHHhcCCCcccccceEEecCCceee
Q psy16481 4 RANTICLFDVDGTLT---Q-PRQ-KAQNETLDFLLKKLKPLSHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLVAY 78 (175)
Q Consensus 4 ~~~kli~~DlDGTLl---~-~~~-~i~~~~~~~~l~~l~~~i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~~NGa~i~ 78 (175)
.+..+||+|+||||+ + +++ .++++++++ |++|.+.+.|+|+|||++..+..+++..+ .+++++||+.+.
T Consensus 109 ~k~~llflD~DGTL~Piv~~p~~a~i~~~~~~a-L~~La~~~~vaIvSGR~~~~l~~~~~l~~-----l~l~g~hGa~i~ 182 (366)
T PLN03017 109 GKQIVMFLDYDGTLSPIVDDPDKAFMSSKMRRT-VKKLAKCFPTAIVTGRCIDKVYNFVKLAE-----LYYAGSHGMDIK 182 (366)
T ss_pred CCCeEEEEecCCcCcCCcCCcccccCCHHHHHH-HHHHhcCCcEEEEeCCCHHHHHHhhcccC-----ceEEEcCCcEEe
Confidence 356899999999999 3 555 899999999 99999449999999999999988754321 378999999987
Q ss_pred e
Q psy16481 79 K 79 (175)
Q Consensus 79 ~ 79 (175)
.
T Consensus 183 ~ 183 (366)
T PLN03017 183 G 183 (366)
T ss_pred c
Confidence 4
No 30
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=99.62 E-value=9.7e-15 Score=131.07 Aligned_cols=159 Identities=15% Similarity=0.148 Sum_probs=99.6
Q ss_pred CcceEEEEecCCCccCCC---CCCCHHHHHHHHHhh-CCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEEecCCceee
Q psy16481 4 RANTICLFDVDGTLTQPR---QKAQNETLDFLLKKL-KPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLVAY 78 (175)
Q Consensus 4 ~~~kli~~DlDGTLl~~~---~~i~~~~~~~~l~~l-~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~~NGa~i~ 78 (175)
.++++|++|+||||++.. ..++++++++ |++| .+. +.|+|+|||++..+.++|+... . .+++++||+.+.
T Consensus 594 ~~~rlI~LDyDGTLlp~~~~~~~p~~~~~~~-L~~L~~d~g~~VaIvSGR~~~~L~~~f~~~~---~-l~laaEHG~~ir 668 (854)
T PLN02205 594 TTTRAILLDYDGTLMPQASIDKSPSSKSIDI-LNTLCRDKNNMVFIVSARSRKTLADWFSPCE---K-LGIAAEHGYFLR 668 (854)
T ss_pred hcCeEEEEecCCcccCCccccCCCCHHHHHH-HHHHHhcCCCEEEEEeCCCHHHHHHHhCCCC---C-eEEEEeCCEEEE
Confidence 467999999999999865 3788999999 9998 445 9999999999999999998741 1 268999999987
Q ss_pred eCCeEeeccchhhhhCHHHHHHHHHHHHHhcccccccccccceeeecccccccc-----hhhccHHHHHHHHHHHHHhcC
Q psy16481 79 KNGKLFEKKSIIDHMGEDKIQTFINYCLQHLSTVTLPFKRGNFIEFRTGLINSI-----IDHMGEDKIQTFINYCLQHLS 153 (175)
Q Consensus 79 ~~~~~i~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~ 153 (175)
..++..++... .. ....+++.+....+... ...+|.++|.+.....+. +++ ...+..++...+.+.+.
T Consensus 669 ~~~~~~w~~~~-~~-~~~~w~~~v~~i~~~y~----ertpGs~IE~K~~slv~HyR~adpd~-~~~qa~el~~~l~~~l~ 741 (854)
T PLN02205 669 LKRDVEWETCV-PV-ADCSWKQIAEPVMQLYT----ETTDGSTIEDKETALVWCYEDADPDF-GSCQAKELLDHLESVLA 741 (854)
T ss_pred eCCCceeeecc-hh-hhHHHHHHHHHHHHHHh----cCCCchhheecceEEEEehhhCChHH-hhhhhHHHHHHHHHHHh
Confidence 54443222111 00 11223333222222211 134677777654333322 111 11122355555555554
Q ss_pred C-CCCceeecceE-EecCCcccC
Q psy16481 154 T-VTLPFKRGNFI-EFRTGLINH 174 (175)
Q Consensus 154 ~-~~~~~s~~~~i-i~~~Gv~K~ 174 (175)
+ .-.+.++..++ +.|+|+||.
T Consensus 742 ~~~~~v~~G~~vvEV~p~gvnKG 764 (854)
T PLN02205 742 NEPVTVKSGQNIVEVKPQGVSKG 764 (854)
T ss_pred cCceEEEECCcEEEEEeCCCCHH
Confidence 3 22355677778 899999995
No 31
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=99.58 E-value=6e-14 Score=109.77 Aligned_cols=156 Identities=18% Similarity=0.086 Sum_probs=90.1
Q ss_pred CcceEEEEecCCCccCC----C-CCCCHHHHHHHHHhhCCC--eEEEEEcCCCHHHHHHHhcCCCcccccceEEecCCce
Q psy16481 4 RANTICLFDVDGTLTQP----R-QKAQNETLDFLLKKLKPL--SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLV 76 (175)
Q Consensus 4 ~~~kli~~DlDGTLl~~----~-~~i~~~~~~~~l~~l~~~--i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~~NGa~ 76 (175)
.+++++++|+||||.+. + ..++++..++ |++|.+. +.++|+|||++..+...+...+ .+++++||+.
T Consensus 1 ~~~~~l~lD~DGTL~~~~~~p~~~~~~~~~~~~-L~~L~~~~~~~v~ivSGR~~~~~~~~~~~~~-----~~l~g~hG~~ 74 (244)
T TIGR00685 1 ARKRAFFFDYDGTLSEIVPDPDAAVVSDRLLTI-LQKLAARPHNAIWIISGRKFLEKWLGVKLPG-----LGLAGEHGCE 74 (244)
T ss_pred CCcEEEEEecCccccCCcCCCcccCCCHHHHHH-HHHHHhCCCCeEEEEECCChhhccccCCCCc-----eeEEeecCEE
Confidence 36789999999999973 2 3688999999 9999887 7789999999887765443321 2589999999
Q ss_pred eeeCCeEeeccchhhhhCH--HHHHHHHHHHHHhcccccccccccceeeecccccccch--hhccHHHHHHHHHHHHHhc
Q psy16481 77 AYKNGKLFEKKSIIDHMGE--DKIQTFINYCLQHLSTVTLPFKRGNFIEFRTGLINSII--DHMGEDKIQTFINYCLQHL 152 (175)
Q Consensus 77 i~~~~~~i~~~~l~~~l~~--~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~ 152 (175)
++.+|+....... +. ..++++...+.++... ..|.++|.+...+.+.. ...++....++.+.+.+..
T Consensus 75 ~~~~g~~~~~~~~----~~~~~~~~~~~~~l~~~~~~-----~pG~~iE~K~~s~~~hyr~a~d~~~~~~~~~~~~~~~~ 145 (244)
T TIGR00685 75 MKDNGSCQDWVNL----TEKIPSWKVRANELREEITT-----RPGVFIERKGVALAWHYRQAPVPELARFRAKELKEKIL 145 (244)
T ss_pred EecCCCcceeeec----hhhhhhHHHHHHHHHHHHhc-----CCCcEEEecceEEEEEeccCCCcHHHHHHHHHHHHHHh
Confidence 8754543211111 11 1233333333333221 25777776543333321 0111222223333333333
Q ss_pred CCCCCce-eecceE-EecCCcccC
Q psy16481 153 STVTLPF-KRGNFI-EFRTGLINH 174 (175)
Q Consensus 153 ~~~~~~~-s~~~~i-i~~~Gv~K~ 174 (175)
+...+.. ++..++ +.|+|+||.
T Consensus 146 ~~~~~~v~~g~~~~e~~p~~~~Kg 169 (244)
T TIGR00685 146 SFTDLEVMDGKAVVELKPRFVNKG 169 (244)
T ss_pred cCCCEEEEECCeEEEEeeCCCCHH
Confidence 3222323 444556 889999994
No 32
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=99.56 E-value=7.5e-15 Score=107.67 Aligned_cols=97 Identities=10% Similarity=0.127 Sum_probs=73.9
Q ss_pred EEEEecCCCccCCC-----------CCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHH---HHhcC-----CCcccccc
Q psy16481 8 ICLFDVDGTLTQPR-----------QKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVA---EQLGG-----EKVLEQFD 67 (175)
Q Consensus 8 li~~DlDGTLl~~~-----------~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~---~~~~~-----~~~~~~~~ 67 (175)
+|++||||||++++ +.+++.+.++ +++++++ ++|++||||++..+. +++.. .+++ ..
T Consensus 1 iVisDIDGTL~~sd~~~~~~~~~~~~~~~~~~~~a-~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~~~~~~~lp--~g 77 (157)
T smart00775 1 IVISDIDGTITKSDVLGHVVPIIGKDWTHPGVAKL-YRDIQNNGYKILYLTARPIGQADRTRSYLSQIKQDGHNLP--HG 77 (157)
T ss_pred CEEEecCCCCcccccccccccccccCcCCHHHHHH-HHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHhhhccccCC--Cc
Confidence 58999999999998 7899999999 9999999 999999999999873 55544 1122 23
Q ss_pred eEEecCCceeee-CCeEeeccchhhhhCHHHHHHHHHHHHHhc
Q psy16481 68 FVFPENGLVAYK-NGKLFEKKSIIDHMGEDKIQTFINYCLQHL 109 (175)
Q Consensus 68 ~~i~~NGa~i~~-~~~~i~~~~l~~~l~~~~~~~i~~~~~~~~ 109 (175)
++++.||+.+.. .+++++..+. ....+.++.+.+.+.+..
T Consensus 78 ~li~~~g~~~~~~~~e~i~~~~~--~~K~~~l~~i~~~~~~~~ 118 (157)
T smart00775 78 PVLLSPDRLFAALHREVISKKPE--VFKIACLRDIKSLFPPQG 118 (157)
T ss_pred eEEEcCCcchhhhhcccccCCHH--HHHHHHHHHHHHhcCCCC
Confidence 789999999974 5666666551 115667777776665433
No 33
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=99.49 E-value=1.1e-12 Score=103.37 Aligned_cols=153 Identities=17% Similarity=0.227 Sum_probs=96.9
Q ss_pred cceEEEEecCCCccCC----C-CCCCHHHHHHHHHhhCCC--eEEEEEcCCCHHHHHHHhcCCCcccccceEEecCCcee
Q psy16481 5 ANTICLFDVDGTLTQP----R-QKAQNETLDFLLKKLKPL--SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLVA 77 (175)
Q Consensus 5 ~~kli~~DlDGTLl~~----~-~~i~~~~~~~~l~~l~~~--i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~~NGa~i 77 (175)
+++++++|+||||.+. . -.++++.++. |++|..+ ..++|.|||+...+..+++..++ +++|+||+.+
T Consensus 17 ~~~~~~lDyDGTl~~i~~~p~~a~~~~~l~~l-L~~Las~~~~~v~iiSGR~~~~l~~~~~v~~i-----~l~aehGa~~ 90 (266)
T COG1877 17 RKRLLFLDYDGTLTEIVPHPEAAVPDDRLLSL-LQDLASDPRNVVAIISGRSLAELERLFGVPGI-----GLIAEHGAEV 90 (266)
T ss_pred cceEEEEeccccccccccCccccCCCHHHHHH-HHHHHhcCCCeEEEEeCCCHHHHHHhcCCCCc-----cEEEecceEE
Confidence 6799999999999982 2 3778899999 9999998 78999999999999999885432 6899999999
Q ss_pred e-eCCeEeeccchhhhhCHHHHH---HHHHHHHHhcccccccccccceeeecccccccchh-hccHHHHH-HHHHHHHHh
Q psy16481 78 Y-KNGKLFEKKSIIDHMGEDKIQ---TFINYCLQHLSTVTLPFKRGNFIEFRTGLINSIID-HMGEDKIQ-TFINYCLQH 151 (175)
Q Consensus 78 ~-~~~~~i~~~~l~~~l~~~~~~---~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~-~~~~~l~~~ 151 (175)
. .+|+...... ..+.+. ++.+..+.+ +....|.|++.+.-++.+... ..+.+... .+.......
T Consensus 91 r~~~g~~~~~~~-----~~~~~~~~~~v~~~l~~~-----v~r~pGs~iE~K~~a~~~Hyr~a~~~~~~~~a~~~~~~~~ 160 (266)
T COG1877 91 RDPNGKWWINLA-----EEADLRWLKEVAAILEYY-----VERTPGSYIERKGFAVALHYRNAEDDEGAALALAEAATLI 160 (266)
T ss_pred ecCCCCeeEecC-----HHHHhhHHHHHHHHHHHH-----hhcCCCeEEEEcCcEEEEeeccCCchhhHHHHHHHHHhcc
Confidence 6 4776643221 222222 444443333 224568888876544443221 11122221 222322222
Q ss_pred cCCCCCceeecceE--EecCCcccC
Q psy16481 152 LSTVTLPFKRGNFI--EFRTGLINH 174 (175)
Q Consensus 152 ~~~~~~~~s~~~~i--i~~~Gv~K~ 174 (175)
-. ..+....++.+ +.|.|+||.
T Consensus 161 ~~-~~~~v~~gk~vVEvrp~~~~KG 184 (266)
T COG1877 161 NE-LKLRVTPGKMVVELRPPGVSKG 184 (266)
T ss_pred cc-ccEEEEeCceEEEEeeCCcchH
Confidence 22 21444556665 669999984
No 34
>PLN02151 trehalose-phosphatase
Probab=99.49 E-value=1.1e-12 Score=106.89 Aligned_cols=69 Identities=23% Similarity=0.267 Sum_probs=59.3
Q ss_pred cceEEEEecCCCcc----CCCC-CCCHHHHHHHHHhhCCCeEEEEEcCCCHHHHHHHhcCCCcccccceEEecCCceeee
Q psy16481 5 ANTICLFDVDGTLT----QPRQ-KAQNETLDFLLKKLKPLSHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLVAYK 79 (175)
Q Consensus 5 ~~kli~~DlDGTLl----~~~~-~i~~~~~~~~l~~l~~~i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~~NGa~i~~ 79 (175)
+..++++|+||||+ +++. .++++++++ |++|.+...++|+|||+...+..+++..+ .++++++|+.+..
T Consensus 97 ~~~ll~lDyDGTL~PIv~~P~~A~~~~~~~~a-L~~La~~~~vaIvSGR~~~~l~~~~~~~~-----l~laGsHG~e~~~ 170 (354)
T PLN02151 97 KQIVMFLDYDGTLSPIVDDPDRAFMSKKMRNT-VRKLAKCFPTAIVSGRCREKVSSFVKLTE-----LYYAGSHGMDIKG 170 (354)
T ss_pred CceEEEEecCccCCCCCCCcccccCCHHHHHH-HHHHhcCCCEEEEECCCHHHHHHHcCCcc-----ceEEEeCCceeec
Confidence 56899999999999 5666 899999999 99999558899999999999999887543 2688999999863
No 35
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=99.41 E-value=4.3e-13 Score=105.21 Aligned_cols=73 Identities=21% Similarity=0.265 Sum_probs=50.0
Q ss_pred cceEEEEecCCCccCCCCCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEEecCCceeee
Q psy16481 5 ANTICLFDVDGTLTQPRQKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLVAYK 79 (175)
Q Consensus 5 ~~kli~~DlDGTLl~~~~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~~NGa~i~~ 79 (175)
+.+|+++|+||||++.+..-..+..+. ++..... +.|+++|||+..++...+...+++ ..+++||.+|+.|+.
T Consensus 1 ~~~ll~sDlD~Tl~~~~~~~~~~l~~~-l~~~~~~~~~~v~~TGRs~~~~~~~~~~~~l~-~Pd~~I~svGt~I~~ 74 (247)
T PF05116_consen 1 PPRLLASDLDGTLIDGDDEALARLEEL-LEQQARPEILFVYVTGRSLESVLRLLREYNLP-QPDYIITSVGTEIYY 74 (247)
T ss_dssp -SEEEEEETBTTTBHCHHHHHHHHHHH-HHHHHCCGEEEEEE-SS-HHHHHHHHHHCT-E-E-SEEEETTTTEEEE
T ss_pred CCEEEEEECCCCCcCCCHHHHHHHHHH-HHHhhCCCceEEEECCCCHHHHHHHHHhCCCC-CCCEEEecCCeEEEE
Confidence 368999999999993333222333333 5523344 999999999999998888765543 346899999999997
No 36
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.41 E-value=9e-12 Score=111.77 Aligned_cols=158 Identities=18% Similarity=0.230 Sum_probs=99.6
Q ss_pred CcceEEEEecCCCccCCCC--------CCCHHHHHHHHHhhCCC--eEEEEEcCCCHHHHHHHhcCCCcccccceEEecC
Q psy16481 4 RANTICLFDVDGTLTQPRQ--------KAQNETLDFLLKKLKPL--SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPEN 73 (175)
Q Consensus 4 ~~~kli~~DlDGTLl~~~~--------~i~~~~~~~~l~~l~~~--i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~~N 73 (175)
.+.+++++|+||||.+... .++++..++ |++|.+. ..++|+|||+...+..+++..++ +++++|
T Consensus 505 a~~rll~LDyDGTL~~~~~~~~~p~~a~p~~~l~~~-L~~L~~d~~~~V~IvSGR~~~~L~~~~~~~~l-----~l~aeH 578 (797)
T PLN03063 505 SNNRLLILGFYGTLTEPRNSQIKEMDLGLHPELKET-LKALCSDPKTTVVVLSRSGKDILDKNFGEYNI-----WLAAEN 578 (797)
T ss_pred ccCeEEEEecCccccCCCCCccccccCCCCHHHHHH-HHHHHcCCCCEEEEEeCCCHHHHHHHhCCCCC-----cEEEeC
Confidence 3568999999999997422 478899999 9999986 99999999999999999987432 689999
Q ss_pred Cceeee-CCeEeeccchhhhhCHHHHHHHHHHHHHhcccccccccccceeeecccccccch-hhc---cHHHHHHHHHHH
Q psy16481 74 GLVAYK-NGKLFEKKSIIDHMGEDKIQTFINYCLQHLSTVTLPFKRGNFIEFRTGLINSII-DHM---GEDKIQTFINYC 148 (175)
Q Consensus 74 Ga~i~~-~~~~i~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~---~~~~~~~~~~~l 148 (175)
|+.+.. +++... .+...++.++...+...++.+-. ...|.++|.+.....+.. ..+ +..+..++.+.+
T Consensus 579 G~~~r~~~~~w~~--~~~~~~~~~w~~~v~~~l~~~~~-----rtpGs~iE~K~~sla~HyR~adp~~g~~~a~el~~~l 651 (797)
T PLN03063 579 GMFLRHTSGEWVT--TMPEHMNLDWVDGVKNVFKYFTD-----RTPRSYVEKSETSLVWNYEYADVEFGRAQARDMLQHL 651 (797)
T ss_pred CEEEecCCCceee--ccccccChhHHHHHHHHHHHHHH-----hCCCcEEEEcCeEEEEEcCCCChHHHHHHHHHHHHHH
Confidence 999864 333211 11111133333334333333211 245888887654444422 111 123444666666
Q ss_pred HHhc-CCCCCceeecceE--EecCCcccC
Q psy16481 149 LQHL-STVTLPFKRGNFI--EFRTGLINH 174 (175)
Q Consensus 149 ~~~~-~~~~~~~s~~~~i--i~~~Gv~K~ 174 (175)
.+.. +...+....|+.+ +.|.|+||.
T Consensus 652 ~~~~~~~~~~~v~~Gk~vvEvrp~gvnKG 680 (797)
T PLN03063 652 WAGPISNASVDVVRGQKSVEVHAIGVTKG 680 (797)
T ss_pred HHhhccCCCcEEEECCeEEEEEcCCCChH
Confidence 4432 3333444555665 679999994
No 37
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=99.40 E-value=1.3e-12 Score=101.67 Aligned_cols=153 Identities=18% Similarity=0.123 Sum_probs=75.6
Q ss_pred EEecCCCccCCCC-----CCCHHHHHHHHHhhCCC--eEEEEEcCCCHHHHHHHhcCCCcccccceEEecCCceeeeCCe
Q psy16481 10 LFDVDGTLTQPRQ-----KAQNETLDFLLKKLKPL--SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLVAYKNGK 82 (175)
Q Consensus 10 ~~DlDGTLl~~~~-----~i~~~~~~~~l~~l~~~--i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~~NGa~i~~~~~ 82 (175)
++|+||||.+... .++++.+++ |++|.+. ..++|+|||+...+..+....+ ..++++||+.+...+.
T Consensus 1 ~lDyDGTL~p~~~~p~~~~~~~~~~~~-L~~La~~~~~~v~IvSGR~~~~~~~~~~~~~-----i~l~gehG~e~~~~~~ 74 (235)
T PF02358_consen 1 FLDYDGTLAPIVDDPDAAVPPPELREL-LRALAADPNNTVAIVSGRSLDDLERFGGIPN-----IGLAGEHGAEIRRPGG 74 (235)
T ss_dssp EEE-TTTSS---S-GGG----HHHHHH-HHHHHHHSE--EEEE-SS-HHHHHHH-S-SS------EEEEGGGTEEEETTE
T ss_pred CcccCCccCCCCCCccccCCCHHHHHH-HHHHhccCCCEEEEEEeCCHHHhHHhcCCCC-----ceEEEEeeEEeccCcc
Confidence 6899999998332 788999999 9999997 6899999999999655544422 2689999999997655
Q ss_pred EeeccchhhhhCHHHHHHHHHHHHHhcccccccccccceeeecccccccchhhc----cHHHHHHHHHHHHHhcCC-CCC
Q psy16481 83 LFEKKSIIDHMGEDKIQTFINYCLQHLSTVTLPFKRGNFIEFRTGLINSIIDHM----GEDKIQTFINYCLQHLST-VTL 157 (175)
Q Consensus 83 ~i~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~-~~~ 157 (175)
....... .....++...+.+.++.+-. ...|.++|.+...+.+...-. ......++.+.+.+.... ..+
T Consensus 75 ~~~~~~~-~~~~~~~~~~~~~~l~~~~~-----~~pG~~iE~K~~sv~~Hyr~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 148 (235)
T PF02358_consen 75 SEWTNLP-ADEDLEWKDEVREILEYFAE-----RTPGSFIEDKEFSVAFHYRNAPPEFGEAQARELAEQLREILASHPGL 148 (235)
T ss_dssp -EEE-TT-GGGGHHHHHHHHHHHTTHHH-----HSTT-EEEEETTEEEEE-TTS-ST----THHHHHHHHHHHHHHH-T-
T ss_pred ccccccc-cccchHHHHHHHHHHHHHHh-----hccCcEEEECCeEEEEEecCCCcchhhhHHHHHHHHHHHHHHhCCCE
Confidence 3222111 11133444555444433211 245777776654333321100 112334444444443322 233
Q ss_pred ceeecc-eE-EecCCcccC
Q psy16481 158 PFKRGN-FI-EFRTGLINH 174 (175)
Q Consensus 158 ~~s~~~-~i-i~~~Gv~K~ 174 (175)
....++ .+ +.|+|++|.
T Consensus 149 ~v~~g~~~vEvrp~~~~KG 167 (235)
T PF02358_consen 149 EVVPGKKVVEVRPPGVNKG 167 (235)
T ss_dssp EEEE-SSEEEEE-TT--HH
T ss_pred EEEECCCEEEEEeCCCChH
Confidence 344444 45 779999983
No 38
>PLN02580 trehalose-phosphatase
Probab=99.40 E-value=8.1e-12 Score=102.97 Aligned_cols=68 Identities=24% Similarity=0.314 Sum_probs=58.2
Q ss_pred cceEEEEecCCCccC-----CCCCCCHHHHHHHHHhhCCCeEEEEEcCCCHHHHHHHhcCCCcccccceEEecCCceee
Q psy16481 5 ANTICLFDVDGTLTQ-----PRQKAQNETLDFLLKKLKPLSHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLVAY 78 (175)
Q Consensus 5 ~~kli~~DlDGTLl~-----~~~~i~~~~~~~~l~~l~~~i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~~NGa~i~ 78 (175)
+..++++|+||||.+ +.-.++++++++ |++|.+...++|+|||+...+..+++..++ ++++++|+.+.
T Consensus 118 k~~~LfLDyDGTLaPIv~~Pd~A~~s~~~~~a-L~~La~~~~VAIVSGR~~~~L~~~l~~~~l-----~laGsHG~e~~ 190 (384)
T PLN02580 118 KKIALFLDYDGTLSPIVDDPDRALMSDAMRSA-VKNVAKYFPTAIISGRSRDKVYELVGLTEL-----YYAGSHGMDIM 190 (384)
T ss_pred CCeEEEEecCCccCCCCCCcccccCCHHHHHH-HHHHhhCCCEEEEeCCCHHHHHHHhCCCCc-----cEEEeCCceee
Confidence 568999999999976 223889999999 999998877999999999999999876432 68899999876
No 39
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.39 E-value=1.1e-11 Score=111.68 Aligned_cols=157 Identities=17% Similarity=0.244 Sum_probs=99.0
Q ss_pred CcceEEEEecCCCccCCC--------------CCCCHHHHHHHHHhhCCC--eEEEEEcCCCHHHHHHHhcCCCcccccc
Q psy16481 4 RANTICLFDVDGTLTQPR--------------QKAQNETLDFLLKKLKPL--SHLAIVSGSDMNKVAEQLGGEKVLEQFD 67 (175)
Q Consensus 4 ~~~kli~~DlDGTLl~~~--------------~~i~~~~~~~~l~~l~~~--i~~~iaTGR~~~~~~~~~~~~~~~~~~~ 67 (175)
.+.+++++|+||||.+.. -.++++..++ |++|.+. ..++|+|||+...+..+++..++
T Consensus 589 a~~RLlfLDyDGTLap~~~~P~~~~~~~~~~~a~p~p~l~~~-L~~L~~dp~n~VaIVSGR~~~~Le~~fg~~~L----- 662 (934)
T PLN03064 589 SNNRLLILGFNATLTEPVDTPGRRGDQIKEMELRLHPELKEP-LRALCSDPKTTIVVLSGSDRSVLDENFGEFDM----- 662 (934)
T ss_pred ccceEEEEecCceeccCCCCcccccccccccccCCCHHHHHH-HHHHHhCCCCeEEEEeCCCHHHHHHHhCCCCc-----
Confidence 356899999999999732 1377889999 9999986 99999999999999999988532
Q ss_pred eEEecCCceeee-CCeEeeccchhhhhCHHHHHHHHHHHHHhcccccccccccceeeecccccccch-----hhccHHHH
Q psy16481 68 FVFPENGLVAYK-NGKLFEKKSIIDHMGEDKIQTFINYCLQHLSTVTLPFKRGNFIEFRTGLINSII-----DHMGEDKI 141 (175)
Q Consensus 68 ~~i~~NGa~i~~-~~~~i~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~~~~~~ 141 (175)
+++++||+.+.. +++... .+...++.++...+...++.+-. ...|.++|.+.....|.. ++ +..+.
T Consensus 663 ~LaAEHG~~~R~~~~~w~~--~~~~~~~~~W~~~v~~ile~~~e-----RtPGS~IE~K~~SLawHYR~ADpe~-g~~qA 734 (934)
T PLN03064 663 WLAAENGMFLRHTKGEWMT--TMPEHLNMDWVDSVKHVFEYFTE-----RTPRSHFETRETSLVWNYKYADVEF-GRLQA 734 (934)
T ss_pred eEEeeCCeEEecCCCccee--ccccccchHHHHHHHHHHHHHHh-----cCCCcEEEEcCcEEEEEecCCChhh-HHHHH
Confidence 689999999864 333221 11111133333334333333211 345888887654444432 11 22334
Q ss_pred HHHHHHHHHh-cCCCCCceeecceE--EecCCcccC
Q psy16481 142 QTFINYCLQH-LSTVTLPFKRGNFI--EFRTGLINH 174 (175)
Q Consensus 142 ~~~~~~l~~~-~~~~~~~~s~~~~i--i~~~Gv~K~ 174 (175)
+++.+.+.+. +.+..+....|+.+ +.|.|+||.
T Consensus 735 ~el~~~L~~~~~~~~~v~V~~Gk~VVEVrP~gvnKG 770 (934)
T PLN03064 735 RDMLQHLWTGPISNAAVDVVQGSRSVEVRPVGVTKG 770 (934)
T ss_pred HHHHHHHHhhhccCCCcEEEeCCeEEEEEcCCCCHH
Confidence 5666666332 22333434455555 679999994
No 40
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=99.32 E-value=7.9e-12 Score=88.14 Aligned_cols=72 Identities=21% Similarity=0.212 Sum_probs=56.1
Q ss_pred eEEEEecCCCccCCCC------CCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEEecCCceeee
Q psy16481 7 TICLFDVDGTLTQPRQ------KAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLVAYK 79 (175)
Q Consensus 7 kli~~DlDGTLl~~~~------~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~~NGa~i~~ 79 (175)
|+|++|+||||+++++ .+.++++++ |++++++ +.|++||||+..... .||+.
T Consensus 2 K~i~~DiDGTL~~~~~~~y~~~~~~~~~ie~-L~~l~~~G~~IiiaTGR~~~~~~-----------------~n~~~--- 60 (126)
T TIGR01689 2 KRLVMDLDNTITLTENGDYANVAPILAVIEK-LRHYKALGFEIVISSSRNMRTYE-----------------GNVGK--- 60 (126)
T ss_pred CEEEEeCCCCcccCCCCcccccccCHHHHHH-HHHHHHCCCEEEEECCCCchhhh-----------------ccccc---
Confidence 7999999999998642 366888999 9999888 999999999986542 36665
Q ss_pred CCeEeeccchhhhhCHHHHHHHHHHHHHhcccc
Q psy16481 80 NGKLFEKKSIIDHMGEDKIQTFINYCLQHLSTV 112 (175)
Q Consensus 80 ~~~~i~~~~l~~~l~~~~~~~i~~~~~~~~~~~ 112 (175)
| +.+.+..+.+++.+++..+
T Consensus 61 ---------i----~~~~~~~t~~wL~k~~ipY 80 (126)
T TIGR01689 61 ---------I----NIHTLPIIILWLNQHNVPY 80 (126)
T ss_pred ---------c----chhhHHHHHHHHHHcCCCC
Confidence 2 5556677778888887654
No 41
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=99.27 E-value=1.2e-11 Score=98.14 Aligned_cols=73 Identities=26% Similarity=0.322 Sum_probs=61.6
Q ss_pred CcceEEEEecCCCccCCCCCC---CHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEEecCCceee
Q psy16481 4 RANTICLFDVDGTLTQPRQKA---QNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLVAY 78 (175)
Q Consensus 4 ~~~kli~~DlDGTLl~~~~~i---~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~~NGa~i~ 78 (175)
...|+|||||||||+++++++ +|.+.++ |++|+++ +.++|||+++...+...++..|+...++ .|..||....
T Consensus 124 ~~~kvIvFDLDgTLi~~~~~v~irdPgV~Ea-L~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~YFd-vIIs~Gdv~~ 200 (301)
T TIGR01684 124 EPPHVVVFDLDSTLITDEEPVRIRDPRIYDS-LTELKKRGCILVLWSYGDRDHVVESMRKVKLDRYFD-IIISGGHKAE 200 (301)
T ss_pred ccceEEEEecCCCCcCCCCccccCCHHHHHH-HHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCcccC-EEEECCcccc
Confidence 356899999999999998876 6999999 9999999 9999999999998888888887755454 4455887765
No 42
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=99.12 E-value=1.6e-10 Score=91.73 Aligned_cols=74 Identities=24% Similarity=0.251 Sum_probs=60.8
Q ss_pred CcceEEEEecCCCccCCCCCC---CHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEEecCCceeee
Q psy16481 4 RANTICLFDVDGTLTQPRQKA---QNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLVAYK 79 (175)
Q Consensus 4 ~~~kli~~DlDGTLl~~~~~i---~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~~NGa~i~~ 79 (175)
...|+|+|||||||+++++++ +|.+.++ |++|+++ +.++|+|+.+...+...++..++...++. |.++|+...+
T Consensus 126 ~~~~~i~~D~D~TL~~~~~~v~irdp~V~Et-L~eLkekGikLaIvTNg~Re~v~~~Le~lgL~~yFDv-II~~g~i~~k 203 (303)
T PHA03398 126 EIPHVIVFDLDSTLITDEEPVRIRDPFVYDS-LDELKERGCVLVLWSYGNREHVVHSLKETKLEGYFDI-IICGGRKAGE 203 (303)
T ss_pred eeccEEEEecCCCccCCCCccccCChhHHHH-HHHHHHCCCEEEEEcCCChHHHHHHHHHcCCCccccE-EEECCCcccc
Confidence 356899999999999999888 8999999 9999999 99999998877777788887776544443 4457777664
No 43
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=99.00 E-value=3.4e-10 Score=88.88 Aligned_cols=71 Identities=23% Similarity=0.286 Sum_probs=59.4
Q ss_pred ceEEEEecCCCccCCCCCCCHHHHHHHHHhhCCC-eEEEEEcC---CCHHHHHHHhcCCCcccccceEEecCCceee
Q psy16481 6 NTICLFDVDGTLTQPRQKAQNETLDFLLKKLKPL-SHLAIVSG---SDMNKVAEQLGGEKVLEQFDFVFPENGLVAY 78 (175)
Q Consensus 6 ~kli~~DlDGTLl~~~~~i~~~~~~~~l~~l~~~-i~~~iaTG---R~~~~~~~~~~~~~~~~~~~~~i~~NGa~i~ 78 (175)
+|.++||+||||++.++.++ .+.++ |++|+++ ++|+++|| |++..+...+..+|+....+.+++.||+.+.
T Consensus 1 ~~~~~~D~DGtl~~~~~~i~-~a~~~-l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~~~~~iit~~~~~~~ 75 (249)
T TIGR01457 1 YKGYLIDLDGTMYKGKERIP-EAETF-VHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPATLETVFTASMATAD 75 (249)
T ss_pred CCEEEEeCCCceEcCCeeCc-CHHHH-HHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEeeHHHHHHH
Confidence 47899999999999988776 78999 9999999 99999995 8899988888887765444458888887643
No 44
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=98.83 E-value=8e-09 Score=78.49 Aligned_cols=70 Identities=21% Similarity=0.167 Sum_probs=56.8
Q ss_pred cceEEEEecCCCccCCCCCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEEecCCceee
Q psy16481 5 ANTICLFDVDGTLTQPRQKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLVAY 78 (175)
Q Consensus 5 ~~kli~~DlDGTLl~~~~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~~NGa~i~ 78 (175)
-.++||+|+||||+++.-.-.| .... +.+|++. +.+++||......+..+-+.+++.. -++|++||+.|+
T Consensus 6 ~~~lIFtDlD~TLl~~~ye~~p-A~pv-~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~v~~--~p~iaEnG~aI~ 76 (274)
T COG3769 6 MPLLIFTDLDGTLLPHSYEWQP-AAPV-LLELKDAGVPVILCSSKTRAEMLYLQKSLGVQG--LPLIAENGAAIY 76 (274)
T ss_pred cceEEEEcccCcccCCCCCCCc-cchH-HHHHHHcCCeEEEeccchHHHHHHHHHhcCCCC--CceeecCCceEE
Confidence 4689999999999995444433 3566 9999999 9999999999999877777766542 379999999999
No 45
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=98.78 E-value=2.3e-09 Score=80.42 Aligned_cols=58 Identities=16% Similarity=0.235 Sum_probs=48.5
Q ss_pred CcceEEEEecCCCccCC-------CCCCCHHHH---HHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCc
Q psy16481 4 RANTICLFDVDGTLTQP-------RQKAQNETL---DFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKV 62 (175)
Q Consensus 4 ~~~kli~~DlDGTLl~~-------~~~i~~~~~---~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~ 62 (175)
..+|+|++|+||||++. +..+++.+. .+ ++.|+++ +.++|+|||+...+...++.+++
T Consensus 19 ~~ikli~~D~Dgtl~~~~i~~~~~~~~~~~~~~~d~~~-i~~L~~~Gi~v~I~T~~~~~~v~~~l~~lgl 87 (183)
T PRK09484 19 ENIRLLICDVDGVFSDGLIYMGNNGEELKAFNVRDGYG-IRCLLTSGIEVAIITGRKSKLVEDRMTTLGI 87 (183)
T ss_pred hCceEEEEcCCeeeecCEEEEcCCCCEEEEEeccchHH-HHHHHHCCCEEEEEeCCCcHHHHHHHHHcCC
Confidence 35899999999999986 555655555 78 9999988 99999999999998888887653
No 46
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=98.74 E-value=1.2e-08 Score=71.10 Aligned_cols=70 Identities=31% Similarity=0.398 Sum_probs=55.4
Q ss_pred EEEEecCCCccCCCC--------CCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEEecCCceee
Q psy16481 8 ICLFDVDGTLTQPRQ--------KAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLVAY 78 (175)
Q Consensus 8 li~~DlDGTLl~~~~--------~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~~NGa~i~ 78 (175)
+++||+||||.+.+. .+.+...+. |++|+++ +.++++|||....+...++..++......+++.++....
T Consensus 1 ~~vfD~D~tl~~~~~~~~~~~~~~~~~~~~~~-l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 79 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIAEIEELELYPGVKEA-LKELKEKGIKLALATNKSRREVLELLEELGLDDYFDPVITSNGAAIY 79 (139)
T ss_pred CeEEccCCceEccCccccccccCCcCcCHHHH-HHHHHHCCCeEEEEeCchHHHHHHHHHHcCCchhhhheeccchhhhh
Confidence 479999999999875 888999999 9999999 999999999999988888765542223346665655443
No 47
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=98.70 E-value=1.2e-08 Score=80.59 Aligned_cols=56 Identities=18% Similarity=0.216 Sum_probs=46.7
Q ss_pred ceEEEEecCCCccCCCC---CCCHHHHHHHHHhhCCC-eEEEEEcCCCHHH---HHHHhcCCCc
Q psy16481 6 NTICLFDVDGTLTQPRQ---KAQNETLDFLLKKLKPL-SHLAIVSGSDMNK---VAEQLGGEKV 62 (175)
Q Consensus 6 ~kli~~DlDGTLl~~~~---~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~---~~~~~~~~~~ 62 (175)
+|+|+||+||||++.++ .+.+.+.++ |++|+++ ++++++|||+... +...+..+|+
T Consensus 1 ~k~i~~D~DGtl~~~~~~~~~~~~~a~~a-l~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~ 63 (257)
T TIGR01458 1 VKGVLLDISGVLYISDAKSGVAVPGSQEA-VKRLRGASVKVRFVTNTTKESKQDLLERLQRLGF 63 (257)
T ss_pred CCEEEEeCCCeEEeCCCcccCcCCCHHHH-HHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCC
Confidence 47999999999999876 377899999 9999999 9999999987775 5555655554
No 48
>PLN02645 phosphoglycolate phosphatase
Probab=98.63 E-value=4.3e-08 Score=79.40 Aligned_cols=57 Identities=14% Similarity=0.264 Sum_probs=46.5
Q ss_pred cceEEEEecCCCccCCCCCCCHHHHHHHHHhhCCC-eEEEEEcCCCHH---HHHHHhcCCCcc
Q psy16481 5 ANTICLFDVDGTLTQPRQKAQNETLDFLLKKLKPL-SHLAIVSGSDMN---KVAEQLGGEKVL 63 (175)
Q Consensus 5 ~~kli~~DlDGTLl~~~~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~---~~~~~~~~~~~~ 63 (175)
++|+|+||+||||++.++.+ +...++ |++|+++ ++|+++|+|+.. .+.+.+..+|+.
T Consensus 27 ~~~~~~~D~DGtl~~~~~~~-~ga~e~-l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~ 87 (311)
T PLN02645 27 SVETFIFDCDGVIWKGDKLI-EGVPET-LDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLN 87 (311)
T ss_pred hCCEEEEeCcCCeEeCCccC-cCHHHH-HHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCC
Confidence 68999999999999988655 777999 9999999 999999999944 444455566653
No 49
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=98.59 E-value=5.4e-08 Score=68.90 Aligned_cols=53 Identities=30% Similarity=0.220 Sum_probs=41.7
Q ss_pred eEEEEecCCCccCCCC---C---------CCHHHHHHHHHhhCCC-eEEEEEcCC-CHHHHHHHhcCC
Q psy16481 7 TICLFDVDGTLTQPRQ---K---------AQNETLDFLLKKLKPL-SHLAIVSGS-DMNKVAEQLGGE 60 (175)
Q Consensus 7 kli~~DlDGTLl~~~~---~---------i~~~~~~~~l~~l~~~-i~~~iaTGR-~~~~~~~~~~~~ 60 (175)
|+|++||||||++... . +-+...+. |+.|+++ +++++||++ +.......++..
T Consensus 1 kli~~DlD~Tl~~~~~~~~~~~~~~~~~~~~~gv~e~-L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~ 67 (128)
T TIGR01681 1 KVIVFDLDNTLWTGENIVVGEDPIIDLEVTIKEIRDK-LQTLKKNGFLLALASYNDDPHVAYELLKIF 67 (128)
T ss_pred CEEEEeCCCCCCCCCcccccCCcchhhHHHHHHHHHH-HHHHHHCCeEEEEEeCCCCHHHHHHHHHhc
Confidence 7899999999999842 1 35688888 9999998 999999999 665555555543
No 50
>PRK10444 UMP phosphatase; Provisional
Probab=98.58 E-value=2.9e-08 Score=77.95 Aligned_cols=55 Identities=18% Similarity=0.250 Sum_probs=46.6
Q ss_pred ceEEEEecCCCccCCCCCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHH---HHHhcCCCc
Q psy16481 6 NTICLFDVDGTLTQPRQKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKV---AEQLGGEKV 62 (175)
Q Consensus 6 ~kli~~DlDGTLl~~~~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~---~~~~~~~~~ 62 (175)
+|+|+||+||||++.+ ++.|.+.++ |++|+++ .+|+++|||+.... .+.+..+|+
T Consensus 1 ~~~v~~DlDGtL~~~~-~~~p~a~~~-l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~ 59 (248)
T PRK10444 1 IKNVICDIDGVLMHDN-VAVPGAAEF-LHRILDKGLPLVLLTNYPSQTGQDLANRFATAGV 59 (248)
T ss_pred CcEEEEeCCCceEeCC-eeCccHHHH-HHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCC
Confidence 5899999999999988 577889999 9999999 99999999998754 445555555
No 51
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=98.56 E-value=1e-07 Score=75.99 Aligned_cols=55 Identities=16% Similarity=0.204 Sum_probs=44.4
Q ss_pred ceEEEEecCCCccCCCCCCCHHHHHHHHHhhCCC-eEEEEEcCCCHH---HHHHHhcCCCc
Q psy16481 6 NTICLFDVDGTLTQPRQKAQNETLDFLLKKLKPL-SHLAIVSGSDMN---KVAEQLGGEKV 62 (175)
Q Consensus 6 ~kli~~DlDGTLl~~~~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~---~~~~~~~~~~~ 62 (175)
+|+|+||+||||++.++.++. +.++ |++|+++ ++|+++|||+.. .+...+..+|+
T Consensus 2 ~~~~~~D~DGtl~~~~~~~~g-a~e~-l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~ 60 (279)
T TIGR01452 2 AQGFIFDCDGVLWLGERVVPG-APEL-LDRLARAGKAALFVTNNSTKSRAEYALKFARLGF 60 (279)
T ss_pred ccEEEEeCCCceEcCCeeCcC-HHHH-HHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCC
Confidence 689999999999998776665 8999 9999999 999999998754 34445555554
No 52
>KOG1050|consensus
Probab=98.55 E-value=6.8e-07 Score=79.38 Aligned_cols=152 Identities=20% Similarity=0.189 Sum_probs=94.3
Q ss_pred CcceEEEEecCCCccCCCCCCCHHHHHHHHHhhCCC--eEEEEEcCCCHHHHHHHhcCCCcccccceEEecCCceeeeCC
Q psy16481 4 RANTICLFDVDGTLTQPRQKAQNETLDFLLKKLKPL--SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLVAYKNG 81 (175)
Q Consensus 4 ~~~kli~~DlDGTLl~~~~~i~~~~~~~~l~~l~~~--i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~~NGa~i~~~~ 81 (175)
+++++|.+|+|||+..+.... +... |+.|... ..+.|+|||....+...+... ...+++++||+.+...+
T Consensus 501 s~~rli~ldyd~t~~~~~~~~---~~~~-l~~L~~dp~n~v~i~s~~~r~~l~~~~~~~----~~lgl~aEhG~f~r~~~ 572 (732)
T KOG1050|consen 501 SKKRLILLDYDLTLIPPRSIK---AISI-LKDLCSDPKNIVYIVSGRGRSVLEKWFFGC----KNLGLAAEHGYFVRIPG 572 (732)
T ss_pred ccceEEEecccccccCCCCch---HHHH-HHHHhcCCCCeEEEEEccCchhhhhhcccc----ccceeecccCceeccCC
Confidence 478999999999999876533 6676 9999886 889999999999887666432 11378999999998655
Q ss_pred eEeeccchhhhhCHHHHHHHHHHHHHhcccccccccccceeeecccccccchh-hc---cHHHHHHHHHHHHHhcCCCCC
Q psy16481 82 KLFEKKSIIDHMGEDKIQTFINYCLQHLSTVTLPFKRGNFIEFRTGLINSIID-HM---GEDKIQTFINYCLQHLSTVTL 157 (175)
Q Consensus 82 ~~i~~~~l~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~---~~~~~~~~~~~l~~~~~~~~~ 157 (175)
. ++..+ .+-++.+.+ +...++... ..+|.|++.+.....|... .+ +.-+++++.+.+.. .+..+
T Consensus 573 ~--w~~~~---~~~~w~~~v-~~i~~~~~e----rt~GS~ie~k~~~l~~hy~~ad~~~g~~qA~el~~~l~~--~~~~~ 640 (732)
T KOG1050|consen 573 K--WETCV---LDLDWKDLV-KDIFQYYTE----RTPGSYIERKETALVWHYRNADPEFGELQAKELLEHLES--KNEPV 640 (732)
T ss_pred c--eeeec---ccccHHHHH-HHHHHHHHh----cCCCceecccCceEEEeeeccCcchhHHHHHHHHHHhcc--cCCCe
Confidence 5 32222 133333333 222222221 3568888876554444321 11 23344555666555 34444
Q ss_pred ceeecceE--EecCCcccCC
Q psy16481 158 PFKRGNFI--EFRTGLINHL 175 (175)
Q Consensus 158 ~~s~~~~i--i~~~Gv~K~~ 175 (175)
....++.+ +-|.|+||.+
T Consensus 641 ~v~~g~~~Vev~~~gvsk~~ 660 (732)
T KOG1050|consen 641 EVVRGKHIVEVRPQGVSKGL 660 (732)
T ss_pred EEEecCceEEEcccccchHH
Confidence 44555554 5699999853
No 53
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=98.52 E-value=5.8e-08 Score=70.86 Aligned_cols=54 Identities=19% Similarity=0.257 Sum_probs=42.8
Q ss_pred ceEEEEecCCCccCCCC-------C-----CCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCc
Q psy16481 6 NTICLFDVDGTLTQPRQ-------K-----AQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKV 62 (175)
Q Consensus 6 ~kli~~DlDGTLl~~~~-------~-----i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~ 62 (175)
+|+|+||+||||++... . +.+. .+ |++|+++ ++++|+||++...+...++.+++
T Consensus 1 ~~~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~~~--~~-i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi 67 (154)
T TIGR01670 1 IRLLILDVDGVLTDGKIYYTNNGEEIKAFNVRDG--YG-IRCALKSGIEVAIITGRKAKLVEDRCKTLGI 67 (154)
T ss_pred CeEEEEeCceeEEcCeEEECCCCcEEEEEechhH--HH-HHHHHHCCCEEEEEECCCCHHHHHHHHHcCC
Confidence 58999999999998321 1 2222 37 9999999 99999999999988888877654
No 54
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=98.31 E-value=4.4e-07 Score=64.10 Aligned_cols=55 Identities=31% Similarity=0.355 Sum_probs=45.2
Q ss_pred eEEEEecCCCccCC--------CCCCCHHHHHHHHHhhCCC-eEEEEEcCCC--------HHHHHHHhcCCCc
Q psy16481 7 TICLFDVDGTLTQP--------RQKAQNETLDFLLKKLKPL-SHLAIVSGSD--------MNKVAEQLGGEKV 62 (175)
Q Consensus 7 kli~~DlDGTLl~~--------~~~i~~~~~~~~l~~l~~~-i~~~iaTGR~--------~~~~~~~~~~~~~ 62 (175)
|+++||+||||++. ..++.+...++ |++|+++ +.++++|+++ ...+...++.+++
T Consensus 1 k~~~~D~dgtL~~~~~~~~~~~~~~~~~~v~~~-l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l 72 (132)
T TIGR01662 1 KGVVLDLDGTLTDDVPYVDDEDERILYPEVPDA-LAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGV 72 (132)
T ss_pred CEEEEeCCCceecCCCCCCCHHHheeCCCHHHH-HHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCC
Confidence 68999999999962 13677888999 9999998 9999999998 6667777776554
No 55
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=98.29 E-value=1.6e-06 Score=64.13 Aligned_cols=45 Identities=24% Similarity=0.324 Sum_probs=35.9
Q ss_pred cceEEEEecCCCccCCCCC------------CCHHHHHHHHHhhCCC-eEEEEEcCCCH
Q psy16481 5 ANTICLFDVDGTLTQPRQK------------AQNETLDFLLKKLKPL-SHLAIVSGSDM 50 (175)
Q Consensus 5 ~~kli~~DlDGTLl~~~~~------------i~~~~~~~~l~~l~~~-i~~~iaTGR~~ 50 (175)
+.|++++|+||||+...+. +-+...++ |++|+++ ++++|+|..+.
T Consensus 12 ~~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~pgv~e~-L~~Lk~~G~~l~I~TN~~~ 69 (166)
T TIGR01664 12 QSKVAAFDLDGTLITTRSGKVFPTSASDWRFLYPEIPAK-LQELDDEGYKIVIFTNQSG 69 (166)
T ss_pred cCcEEEEeCCCceEecCCCCcccCChHHeEEecCCHHHH-HHHHHHCCCEEEEEeCCcc
Confidence 3589999999999985442 23678888 9999998 99999996543
No 56
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.28 E-value=1e-05 Score=74.34 Aligned_cols=65 Identities=11% Similarity=0.142 Sum_probs=47.4
Q ss_pred EEEecCCCccCCCCCCCHHHHHHHHHhhC----CC-eEEEEEcCCCHHHHHHHhcCCCcc-cccceEEecCCceeee
Q psy16481 9 CLFDVDGTLTQPRQKAQNETLDFLLKKLK----PL-SHLAIVSGSDMNKVAEQLGGEKVL-EQFDFVFPENGLVAYK 79 (175)
Q Consensus 9 i~~DlDGTLl~~~~~i~~~~~~~~l~~l~----~~-i~~~iaTGR~~~~~~~~~~~~~~~-~~~~~~i~~NGa~i~~ 79 (175)
||+|+|+| +. ..+..++. ++.++ .. +.|+++|||++..+...+...+++ ..+|.+||.-|+.||.
T Consensus 775 ia~D~d~~-~~----~~~~l~~~-~~~~~~~~~~~~igfv~aTGR~l~~~~~~l~~~~lp~~~PD~lI~~vGTeIyy 845 (1050)
T TIGR02468 775 IAVDCYDD-KD----LLQIIKNI-FEAVRKERMEGSSGFILSTSMTISEIQSFLKSGGLNPTDFDALICNSGSELYY 845 (1050)
T ss_pred EEeccCCC-CC----hHHHHHHH-HHHHhccccCCceEEEEEcCCCHHHHHHHHHhCCCCCCCCCEEEeCCCcceec
Confidence 44999999 22 22222232 55554 34 999999999999999988776664 2577899999999986
No 57
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=98.07 E-value=3e-06 Score=65.99 Aligned_cols=52 Identities=23% Similarity=0.351 Sum_probs=44.0
Q ss_pred EEEecCCCccCCCCCCCHHHHHHHHHhhCCC-eEEEEEc---CCCHHHHHHHhcC-CCc
Q psy16481 9 CLFDVDGTLTQPRQKAQNETLDFLLKKLKPL-SHLAIVS---GSDMNKVAEQLGG-EKV 62 (175)
Q Consensus 9 i~~DlDGTLl~~~~~i~~~~~~~~l~~l~~~-i~~~iaT---GR~~~~~~~~~~~-~~~ 62 (175)
++||+||||++.++.++ .+.++ |+.++++ +++.+.| ||+...+.+.+.. .++
T Consensus 1 ~lfD~DGvL~~~~~~~~-~a~e~-i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~ 57 (236)
T TIGR01460 1 FLFDIDGVLWLGHKPIP-GAAEA-LNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGV 57 (236)
T ss_pred CEEeCcCccCcCCccCc-CHHHH-HHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 57999999999987766 88999 9999998 9999998 8999988776665 444
No 58
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=98.05 E-value=5.2e-06 Score=56.38 Aligned_cols=52 Identities=19% Similarity=0.335 Sum_probs=39.6
Q ss_pred EEEecCCCccCCCCCCCHHHHHHHHHhhCCC-eEEEEEcCCC---HHHHHHHhcCCCc
Q psy16481 9 CLFDVDGTLTQPRQKAQNETLDFLLKKLKPL-SHLAIVSGSD---MNKVAEQLGGEKV 62 (175)
Q Consensus 9 i~~DlDGTLl~~~~~i~~~~~~~~l~~l~~~-i~~~iaTGR~---~~~~~~~~~~~~~ 62 (175)
++||+||||.+.+..++ ...++ |++|+++ .+++++|-++ ...+.+.+..+|+
T Consensus 1 ~l~D~dGvl~~g~~~ip-ga~e~-l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi 56 (101)
T PF13344_consen 1 FLFDLDGVLYNGNEPIP-GAVEA-LDALRERGKPVVFLTNNSSRSREEYAKKLKKLGI 56 (101)
T ss_dssp EEEESTTTSEETTEE-T-THHHH-HHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTT
T ss_pred CEEeCccEeEeCCCcCc-CHHHH-HHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCc
Confidence 68999999999776654 66899 9999999 9999998554 4456666666654
No 59
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=97.98 E-value=1.8e-05 Score=61.73 Aligned_cols=55 Identities=13% Similarity=0.105 Sum_probs=40.7
Q ss_pred EEEEecCCCccCCCC------C-CCHH---------------------------HHHHHHHhhCCC-eEEEEEcCC----
Q psy16481 8 ICLFDVDGTLTQPRQ------K-AQNE---------------------------TLDFLLKKLKPL-SHLAIVSGS---- 48 (175)
Q Consensus 8 li~~DlDGTLl~~~~------~-i~~~---------------------------~~~~~l~~l~~~-i~~~iaTGR---- 48 (175)
.|.|||||||+++.. + .+++ ..+. |+.++++ ++++++|+|
T Consensus 65 aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s~p~~~a~el-L~~l~~~G~~i~iVTnr~~~k 143 (237)
T TIGR01672 65 AVSFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQL-IDMHQRRGDAIFFVTGRTPGK 143 (237)
T ss_pred EEEEeCCCccccCcHHHhCCcccCCHHHhhhhcChHHHHHHHHhcccCCcchhHHHHH-HHHHHHCCCEEEEEeCCCCCc
Confidence 899999999999754 2 3442 4566 8899999 999999999
Q ss_pred CHHHHHHHhcCCCcc
Q psy16481 49 DMNKVAEQLGGEKVL 63 (175)
Q Consensus 49 ~~~~~~~~~~~~~~~ 63 (175)
.-..+..+++.+|++
T Consensus 144 ~~~~a~~ll~~lGi~ 158 (237)
T TIGR01672 144 TDTVSKTLAKNFHIP 158 (237)
T ss_pred CHHHHHHHHHHhCCc
Confidence 444555666666553
No 60
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=97.91 E-value=2e-05 Score=61.52 Aligned_cols=66 Identities=15% Similarity=0.178 Sum_probs=48.6
Q ss_pred CcceEEEEecCCCccCCCCCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHH--HHHHhcCCCccc-ccceEEe
Q psy16481 4 RANTICLFDVDGTLTQPRQKAQNETLDFLLKKLKPL-SHLAIVSGSDMNK--VAEQLGGEKVLE-QFDFVFP 71 (175)
Q Consensus 4 ~~~kli~~DlDGTLl~~~~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~--~~~~~~~~~~~~-~~~~~i~ 71 (175)
..+++++||+||||.+..+ +-|...++ |++|+++ ++++++|..+... +.+.+..+++.. .++.+++
T Consensus 6 ~~~~~~~~D~dG~l~~~~~-~~pga~e~-L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~~~~~~~Ii~ 75 (242)
T TIGR01459 6 NDYDVFLLDLWGVIIDGNH-TYPGAVQN-LNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGINADLPEMIIS 75 (242)
T ss_pred hcCCEEEEecccccccCCc-cCccHHHH-HHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCCccccceEEc
Confidence 4678999999999998765 46788999 9999998 9999987755443 335666666543 3444444
No 61
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=97.89 E-value=1.9e-05 Score=57.00 Aligned_cols=42 Identities=14% Similarity=0.275 Sum_probs=35.9
Q ss_pred eEEEEecCCCccCCCC----------CCCHHHHHHHHHhhCCC-eEEEEEcCCC
Q psy16481 7 TICLFDVDGTLTQPRQ----------KAQNETLDFLLKKLKPL-SHLAIVSGSD 49 (175)
Q Consensus 7 kli~~DlDGTLl~~~~----------~i~~~~~~~~l~~l~~~-i~~~iaTGR~ 49 (175)
+.++||+||||.+... ++-+...++ |+.|+++ ++++|+|..+
T Consensus 1 ~~~~~d~dgtl~~~~~~~~~~~~~~~~~~~g~~~~-l~~Lk~~g~~~~I~Sn~~ 53 (147)
T TIGR01656 1 PALFLDRDGVINEDTVSDYPRSLDDWQLRPGAVPA-LLTLRAAGYTVVVVTNQS 53 (147)
T ss_pred CeEEEeCCCceeccCCcccCCCHHHeEEcCChHHH-HHHHHHCCCEEEEEeCCC
Confidence 5789999999999763 346788898 9999999 9999999865
No 62
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=97.85 E-value=3.8e-05 Score=56.87 Aligned_cols=54 Identities=24% Similarity=0.275 Sum_probs=44.5
Q ss_pred cceEEEEecCCCccCCCC-CCCHHHHHHHHHhhCCC-eEEEEEcCCCH-HHHHHHhcC
Q psy16481 5 ANTICLFDVDGTLTQPRQ-KAQNETLDFLLKKLKPL-SHLAIVSGSDM-NKVAEQLGG 59 (175)
Q Consensus 5 ~~kli~~DlDGTLl~~~~-~i~~~~~~~~l~~l~~~-i~~~iaTGR~~-~~~~~~~~~ 59 (175)
..|+|++|+||||+..+. .+.+...++ |++|+++ ++++++|+.+. ..+...+..
T Consensus 24 ~v~~vv~D~Dgtl~~~~~~~~~pgv~e~-L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~ 80 (170)
T TIGR01668 24 GIKGVVLDKDNTLVYPDHNEAYPALRDW-IEELKAAGRKLLIVSNNAGEQRAKAVEKA 80 (170)
T ss_pred CCCEEEEecCCccccCCCCCcChhHHHH-HHHHHHcCCEEEEEeCCchHHHHHHHHHH
Confidence 569999999999998766 788999999 9999999 99999999883 444444344
No 63
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=97.85 E-value=4.9e-05 Score=56.62 Aligned_cols=56 Identities=30% Similarity=0.289 Sum_probs=42.7
Q ss_pred ceEEEEecCCCccCCCC--------------------------CCCHHHHHHHHHhhCCC-eEEEEEcCC-CHHHHHHHh
Q psy16481 6 NTICLFDVDGTLTQPRQ--------------------------KAQNETLDFLLKKLKPL-SHLAIVSGS-DMNKVAEQL 57 (175)
Q Consensus 6 ~kli~~DlDGTLl~~~~--------------------------~i~~~~~~~~l~~l~~~-i~~~iaTGR-~~~~~~~~~ 57 (175)
.|+|+||+|+||.++.. .+-+...+. |+.|+++ ++++++|++ +...+...+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pGv~el-L~~Lk~~G~~l~I~Sn~~~~~~~~~~L 80 (174)
T TIGR01685 2 PRVIVFDLDGTLWDHYMISLLGGPFKPVKQNNSIIIDKSGTEVTLIKEVRDV-LQTLKDAGTYLATASWNDVPEWAYEIL 80 (174)
T ss_pred CcEEEEeCCCCCcCcccccccCCCceeccCCCCeEEeCCCCEEEEcccHHHH-HHHHHHCCCEEEEEeCCCChHHHHHHH
Confidence 58999999999988321 122556788 9999999 999999988 777666666
Q ss_pred cCCCc
Q psy16481 58 GGEKV 62 (175)
Q Consensus 58 ~~~~~ 62 (175)
+.+++
T Consensus 81 ~~~~l 85 (174)
T TIGR01685 81 GTFEI 85 (174)
T ss_pred HhCCc
Confidence 66543
No 64
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=97.82 E-value=1.7e-05 Score=58.86 Aligned_cols=58 Identities=19% Similarity=0.225 Sum_probs=49.2
Q ss_pred CcceEEEEecCCCccCCC----------CCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCc
Q psy16481 4 RANTICLFDVDGTLTQPR----------QKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKV 62 (175)
Q Consensus 4 ~~~kli~~DlDGTLl~~~----------~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~ 62 (175)
+.+|+++||+||+|++.. +.++.+.-.+ |+.|+++ +.++|+|+++...+...++.+++
T Consensus 5 ~~i~~~v~d~dGv~tdg~~~~~~~g~~~~~~~~~D~~~-~~~L~~~Gi~laIiT~k~~~~~~~~l~~lgi 73 (169)
T TIGR02726 5 KNIKLVILDVDGVMTDGRIVINDEGIESRNFDIKDGMG-VIVLQLCGIDVAIITSKKSGAVRHRAEELKI 73 (169)
T ss_pred ccCeEEEEeCceeeECCeEEEcCCCcEEEEEecchHHH-HHHHHHCCCEEEEEECCCcHHHHHHHHHCCC
Confidence 568999999999999951 2566677788 9999999 99999999999999888888754
No 65
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=97.77 E-value=0.00011 Score=56.18 Aligned_cols=20 Identities=35% Similarity=0.488 Sum_probs=18.3
Q ss_pred CCCCcceEEEEecCCCccCC
Q psy16481 1 MTCRANTICLFDVDGTLTQP 20 (175)
Q Consensus 1 ~~~~~~kli~~DlDGTLl~~ 20 (175)
|.+..+|+|+||+||||+++
T Consensus 1 ~~~~~~~~iiFD~DGTL~d~ 20 (226)
T PRK13222 1 MKFMDIRAVAFDLDGTLVDS 20 (226)
T ss_pred CCCCcCcEEEEcCCcccccC
Confidence 78889999999999999975
No 66
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=97.76 E-value=3.1e-05 Score=59.03 Aligned_cols=38 Identities=34% Similarity=0.297 Sum_probs=24.9
Q ss_pred HHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEE
Q psy16481 33 LKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVF 70 (175)
Q Consensus 33 l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i 70 (175)
|+.|+++ +.++|+||.+...+...++..++...++.++
T Consensus 91 l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~~~f~~i~ 129 (214)
T PRK13288 91 LKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLDEFFDVVI 129 (214)
T ss_pred HHHHHHCCCeEEEEeCCCHHHHHHHHHHcCChhceeEEE
Confidence 6677776 8888888887777766666655443333343
No 67
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=97.74 E-value=2.3e-05 Score=56.85 Aligned_cols=58 Identities=22% Similarity=0.256 Sum_probs=45.6
Q ss_pred CcceEEEEecCCCccCCC------C----CCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCc
Q psy16481 4 RANTICLFDVDGTLTQPR------Q----KAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKV 62 (175)
Q Consensus 4 ~~~kli~~DlDGTLl~~~------~----~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~ 62 (175)
+.+|++++|+||||++-. . .+.-..=.. |+.|.+. ++++|.|||.-.-+.+.++.+|+
T Consensus 6 ~~IkLli~DVDGvLTDG~ly~~~~Gee~KaFnv~DG~G-ik~l~~~Gi~vAIITGr~s~ive~Ra~~LGI 74 (170)
T COG1778 6 KNIKLLILDVDGVLTDGKLYYDENGEEIKAFNVRDGHG-IKLLLKSGIKVAIITGRDSPIVEKRAKDLGI 74 (170)
T ss_pred hhceEEEEeccceeecCeEEEcCCCceeeeeeccCcHH-HHHHHHcCCeEEEEeCCCCHHHHHHHHHcCC
Confidence 578999999999999832 1 222222246 8888888 99999999999999999988875
No 68
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.70 E-value=4.5e-05 Score=61.13 Aligned_cols=56 Identities=23% Similarity=0.331 Sum_probs=46.1
Q ss_pred cceEEEEecCCCccCCC------------CCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCC
Q psy16481 5 ANTICLFDVDGTLTQPR------------QKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEK 61 (175)
Q Consensus 5 ~~kli~~DlDGTLl~~~------------~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~ 61 (175)
+.+.+++|+||||.... ..+.+...+. |++|+++ +.++++|||+.......+..++
T Consensus 157 ~~~~~~~D~dgtl~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~ 225 (300)
T PHA02530 157 LPKAVIFDIDGTLAKMGGRSPYDWTKVKEDKPNPMVVEL-VKMYKAAGYEIIVVSGRDGVCEEDTVEWLR 225 (300)
T ss_pred CCCEEEEECCCcCcCCCCCCccchhhcccCCCChhHHHH-HHHHHhCCCEEEEEeCCChhhHHHHHHHHH
Confidence 35799999999999733 3577889999 9999999 9999999999988766665543
No 69
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=97.69 E-value=3.9e-05 Score=61.15 Aligned_cols=19 Identities=32% Similarity=0.450 Sum_probs=16.4
Q ss_pred CCcceEEEEecCCCccCCC
Q psy16481 3 CRANTICLFDVDGTLTQPR 21 (175)
Q Consensus 3 ~~~~kli~~DlDGTLl~~~ 21 (175)
++.+|+|+|||||||+++.
T Consensus 59 ~~~~k~vIFDlDGTLiDS~ 77 (273)
T PRK13225 59 PQTLQAIIFDFDGTLVDSL 77 (273)
T ss_pred hhhcCEEEECCcCccccCH
Confidence 4578999999999999953
No 70
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=97.63 E-value=9.2e-05 Score=58.77 Aligned_cols=56 Identities=23% Similarity=0.323 Sum_probs=43.8
Q ss_pred CCCcceEEEEecCCCccCCCCCCCHHHHHHHHHhhCCC-eEEEEEcCCC---HHHHHHHhcC
Q psy16481 2 TCRANTICLFDVDGTLTQPRQKAQNETLDFLLKKLKPL-SHLAIVSGSD---MNKVAEQLGG 59 (175)
Q Consensus 2 ~~~~~kli~~DlDGTLl~~~~~i~~~~~~~~l~~l~~~-i~~~iaTGR~---~~~~~~~~~~ 59 (175)
.++.++.++||+||||.+.+..|+ ...++ |++|+++ +++++.|-++ ...+...+..
T Consensus 4 ~~~~y~~~l~DlDGvl~~G~~~ip-ga~e~-l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~ 63 (269)
T COG0647 4 VMDKYDGFLFDLDGVLYRGNEAIP-GAAEA-LKRLKAAGKPVIFLTNNSTRSREVVAARLSS 63 (269)
T ss_pred hhhhcCEEEEcCcCceEeCCccCc-hHHHH-HHHHHHcCCeEEEEeCCCCCCHHHHHHHHHh
Confidence 467889999999999998877775 66899 9999999 9999988544 4434455544
No 71
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=97.63 E-value=0.00032 Score=53.90 Aligned_cols=80 Identities=14% Similarity=0.079 Sum_probs=48.8
Q ss_pred CCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccc-eEEecCCceeeeCCeEeeccchhhhhCHHHHHHH
Q psy16481 24 AQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFD-FVFPENGLVAYKNGKLFEKKSIIDHMGEDKIQTF 101 (175)
Q Consensus 24 i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~-~~i~~NGa~i~~~~~~i~~~~l~~~l~~~~~~~i 101 (175)
+.+...+. ++.++++ .+++++||....-+.+..+.+|+..... -+...+| + -.|+++-.... .+.....+
T Consensus 78 l~~ga~el-v~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~~~an~l~~~dG--~-ltG~v~g~~~~----~~~K~~~l 149 (212)
T COG0560 78 LTPGAEEL-VAALKAAGAKVVIISGGFTFLVEPIAERLGIDYVVANELEIDDG--K-LTGRVVGPICD----GEGKAKAL 149 (212)
T ss_pred CCccHHHH-HHHHHHCCCEEEEEcCChHHHHHHHHHHhCCchheeeEEEEeCC--E-EeceeeeeecC----cchHHHHH
Confidence 34446666 8888889 9999999999887777777766432111 1333344 1 13444322222 34567777
Q ss_pred HHHHHHhccc
Q psy16481 102 INYCLQHLST 111 (175)
Q Consensus 102 ~~~~~~~~~~ 111 (175)
.+++.+.+..
T Consensus 150 ~~~~~~~g~~ 159 (212)
T COG0560 150 RELAAELGIP 159 (212)
T ss_pred HHHHHHcCCC
Confidence 7777777654
No 72
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=97.61 E-value=0.0001 Score=58.27 Aligned_cols=18 Identities=6% Similarity=0.106 Sum_probs=15.9
Q ss_pred CcceEEEEecCCCccCCC
Q psy16481 4 RANTICLFDVDGTLTQPR 21 (175)
Q Consensus 4 ~~~kli~~DlDGTLl~~~ 21 (175)
+.+|+|+|||||||+++.
T Consensus 22 ~~~k~vIFDlDGTLvDS~ 39 (260)
T PLN03243 22 CGWLGVVLEWEGVIVEDD 39 (260)
T ss_pred CCceEEEEeCCCceeCCc
Confidence 468999999999999974
No 73
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=97.57 E-value=0.00015 Score=55.96 Aligned_cols=17 Identities=35% Similarity=0.507 Sum_probs=15.1
Q ss_pred CcceEEEEecCCCccCC
Q psy16481 4 RANTICLFDVDGTLTQP 20 (175)
Q Consensus 4 ~~~kli~~DlDGTLl~~ 20 (175)
..+|+|+|||||||++.
T Consensus 8 ~~~k~vIFDlDGTL~d~ 24 (224)
T PRK14988 8 QDVDTVLLDMDGTLLDL 24 (224)
T ss_pred ccCCEEEEcCCCCccch
Confidence 36799999999999994
No 74
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=97.57 E-value=0.00014 Score=55.51 Aligned_cols=34 Identities=18% Similarity=0.105 Sum_probs=25.4
Q ss_pred HHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCc
Q psy16481 28 TLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKV 62 (175)
Q Consensus 28 ~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~ 62 (175)
..+. |++|+++ ++++|+||.....+...++.+++
T Consensus 90 ~~~~-l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i 124 (219)
T TIGR00338 90 AEEL-VKTLKEKGYKVAVISGGFDLFAEHVKDKLGL 124 (219)
T ss_pred HHHH-HHHHHHCCCEEEEECCCcHHHHHHHHHHcCC
Confidence 4445 7777777 89999999888777777766554
No 75
>PRK06769 hypothetical protein; Validated
Probab=97.53 E-value=6.5e-05 Score=55.77 Aligned_cols=47 Identities=19% Similarity=0.074 Sum_probs=38.6
Q ss_pred CCcceEEEEecCCCccCC------CC-CCCHHHHHHHHHhhCCC-eEEEEEcCCCH
Q psy16481 3 CRANTICLFDVDGTLTQP------RQ-KAQNETLDFLLKKLKPL-SHLAIVSGSDM 50 (175)
Q Consensus 3 ~~~~kli~~DlDGTLl~~------~~-~i~~~~~~~~l~~l~~~-i~~~iaTGR~~ 50 (175)
|+.+|+|++|.||||-.. +. ++-+...+. |++|+++ ++++++|+.+.
T Consensus 1 ~~~~~~~~~d~d~~~~~~~~~~~~~~~~~~pgv~e~-L~~Lk~~G~~l~I~Tn~~~ 55 (173)
T PRK06769 1 MTNIQAIFIDRDGTIGGDTTIHYPGSFTLFPFTKAS-LQKLKANHIKIFSFTNQPG 55 (173)
T ss_pred CCCCcEEEEeCCCcccCCCCCCCHHHeEECCCHHHH-HHHHHHCCCEEEEEECCch
Confidence 468999999999999544 22 456788898 9999999 99999998763
No 76
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=97.50 E-value=0.00043 Score=50.77 Aligned_cols=57 Identities=25% Similarity=0.249 Sum_probs=51.1
Q ss_pred cceEEEEecCCCccCCCC-CCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCc
Q psy16481 5 ANTICLFDVDGTLTQPRQ-KAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKV 62 (175)
Q Consensus 5 ~~kli~~DlDGTLl~~~~-~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~ 62 (175)
.+|-|++|+|.||++-+. ..+|+.++- +.+++++ +.++++|-.....+....+.+++
T Consensus 27 Gikgvi~DlDNTLv~wd~~~~tpe~~~W-~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v 85 (175)
T COG2179 27 GIKGVILDLDNTLVPWDNPDATPELRAW-LAELKEAGIKVVVVSNNKESRVARAAEKLGV 85 (175)
T ss_pred CCcEEEEeccCceecccCCCCCHHHHHH-HHHHHhcCCEEEEEeCCCHHHHHhhhhhcCC
Confidence 578999999999999665 899999999 9999999 99999999999999888887654
No 77
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=97.45 E-value=8.2e-05 Score=54.62 Aligned_cols=39 Identities=28% Similarity=0.451 Sum_probs=30.0
Q ss_pred eEEEEecCCCccCCCC------------CCCHHHHHHHHHhhCCC-eEEEEEc
Q psy16481 7 TICLFDVDGTLTQPRQ------------KAQNETLDFLLKKLKPL-SHLAIVS 46 (175)
Q Consensus 7 kli~~DlDGTLl~~~~------------~i~~~~~~~~l~~l~~~-i~~~iaT 46 (175)
|+.+||+||||..... -+.+...++ |++|.+. ..+||+|
T Consensus 1 Kia~fD~DgTLi~~~s~~~f~~~~~D~~~~~~~v~~~-L~~l~~~Gy~IvIvT 52 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKSGKKFPKDPDDWKFFPPGVPEA-LRELHKKGYKIVIVT 52 (159)
T ss_dssp SEEEE-SCTTTEE-STSTTS-SSTCGGEEC-TTHHHH-HHHHHHTTEEEEEEE
T ss_pred CEEEEeCCCCccCCCCCCcCcCCHHHhhhcchhHHHH-HHHHHhcCCeEEEEe
Confidence 7899999999987421 245578899 9999888 9999998
No 78
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=97.44 E-value=0.00018 Score=53.60 Aligned_cols=44 Identities=11% Similarity=0.255 Sum_probs=35.0
Q ss_pred cceEEEEecCCCccCCCC---------CCCHHHHHHHHHhhCCC-eEEEEEcCCC
Q psy16481 5 ANTICLFDVDGTLTQPRQ---------KAQNETLDFLLKKLKPL-SHLAIVSGSD 49 (175)
Q Consensus 5 ~~kli~~DlDGTLl~~~~---------~i~~~~~~~~l~~l~~~-i~~~iaTGR~ 49 (175)
-+|+++||+||||.-... .+-+...+. |++|+++ ++++|+|..+
T Consensus 2 ~~~~~~~d~~~t~~~~~~~~~~~~~~~~~~pgv~e~-L~~Lk~~g~~l~I~Tn~~ 55 (181)
T PRK08942 2 SMKAIFLDRDGVINVDSDGYVKSPDEWIPIPGSIEA-IARLKQAGYRVVVATNQS 55 (181)
T ss_pred CccEEEEECCCCcccCCccccCCHHHeEECCCHHHH-HHHHHHCCCEEEEEeCCc
Confidence 479999999999865432 233456788 9999999 9999999876
No 79
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=97.43 E-value=9.8e-05 Score=54.82 Aligned_cols=42 Identities=24% Similarity=0.386 Sum_probs=34.7
Q ss_pred eEEEEecCCCccCCC--------CCCCHHHHHHHHHhhCCC-eEEEEEcCCC
Q psy16481 7 TICLFDVDGTLTQPR--------QKAQNETLDFLLKKLKPL-SHLAIVSGSD 49 (175)
Q Consensus 7 kli~~DlDGTLl~~~--------~~i~~~~~~~~l~~l~~~-i~~~iaTGR~ 49 (175)
|++++|.||||+... -.+-|...++ |++|+++ ++++++|.-+
T Consensus 2 ~~~~~D~Dgtl~~~~~~~~~~~~~~~~pgv~e~-L~~Lk~~G~~l~i~TN~~ 52 (176)
T TIGR00213 2 KAIFLDRDGTINIDHGYVHEIDNFEFIDGVIDA-LRELKKMGYALVLVTNQS 52 (176)
T ss_pred CEEEEeCCCCEeCCCCCCCCHHHeEECCCHHHH-HHHHHHCCCEEEEEeCCc
Confidence 789999999999532 1345678898 9999999 9999999765
No 80
>PLN02940 riboflavin kinase
Probab=97.42 E-value=0.00017 Score=60.21 Aligned_cols=39 Identities=21% Similarity=0.313 Sum_probs=26.4
Q ss_pred HHhhCCC-eEEEEEcCCCHHHHHHHhc-CCCcccccceEEe
Q psy16481 33 LKKLKPL-SHLAIVSGSDMNKVAEQLG-GEKVLEQFDFVFP 71 (175)
Q Consensus 33 l~~l~~~-i~~~iaTGR~~~~~~~~~~-~~~~~~~~~~~i~ 71 (175)
|++|+++ ++++|+|+.+...+...+. ..++...++.+++
T Consensus 102 L~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~~~Fd~ii~ 142 (382)
T PLN02940 102 IKHLKSHGVPMALASNSPRANIEAKISCHQGWKESFSVIVG 142 (382)
T ss_pred HHHHHHCCCcEEEEeCCcHHHHHHHHHhccChHhhCCEEEe
Confidence 6677777 8999999988877766664 4444344555554
No 81
>PLN02954 phosphoserine phosphatase
Probab=97.40 E-value=0.00016 Score=55.41 Aligned_cols=33 Identities=21% Similarity=0.233 Sum_probs=25.6
Q ss_pred HHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCc
Q psy16481 29 LDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKV 62 (175)
Q Consensus 29 ~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~ 62 (175)
.+. |+.++++ +.++|+||.....+...++.+++
T Consensus 90 ~e~-l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi 123 (224)
T PLN02954 90 PEL-VKKLRARGTDVYLVSGGFRQMIAPVAAILGI 123 (224)
T ss_pred HHH-HHHHHHCCCEEEEECCCcHHHHHHHHHHhCC
Confidence 334 6777777 89999999998888877777654
No 82
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=97.39 E-value=0.00039 Score=52.42 Aligned_cols=33 Identities=15% Similarity=0.124 Sum_probs=25.5
Q ss_pred HHHHHHhhCCCeEEEEEcCCCHHHHHHHhcCCCc
Q psy16481 29 LDFLLKKLKPLSHLAIVSGSDMNKVAEQLGGEKV 62 (175)
Q Consensus 29 ~~~~l~~l~~~i~~~iaTGR~~~~~~~~~~~~~~ 62 (175)
.+. |+.|++++.++++||.....+...++.+++
T Consensus 74 ~e~-L~~L~~~~~~~IvS~~~~~~~~~~l~~~gl 106 (205)
T PRK13582 74 VEF-LDWLRERFQVVILSDTFYEFAGPLMRQLGW 106 (205)
T ss_pred HHH-HHHHHhcCCEEEEeCCcHHHHHHHHHHcCC
Confidence 345 777766678999999999988888777654
No 83
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=97.38 E-value=0.00054 Score=55.75 Aligned_cols=54 Identities=22% Similarity=0.233 Sum_probs=44.6
Q ss_pred cceEEEEecCCCccCC---CC--------CCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcC
Q psy16481 5 ANTICLFDVDGTLTQP---RQ--------KAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGG 59 (175)
Q Consensus 5 ~~kli~~DlDGTLl~~---~~--------~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~ 59 (175)
.+|+|++|+|+||+.. +. ..-+...+. |++|+++ +.+++||..+...+...++.
T Consensus 2 ~~k~~v~DlDnTlw~gv~~e~g~~~i~~~~~~~~~~e~-L~~L~~~Gi~lai~S~n~~~~a~~~l~~ 67 (320)
T TIGR01686 2 ALKVLVLDLDNTLWGGVLGEDGIDNLNLSPLHKTLQEK-IKTLKKQGFLLALASKNDEDDAKKVFER 67 (320)
T ss_pred CeEEEEEcCCCCCCCCEEccCCccccccCccHHHHHHH-HHHHHhCCCEEEEEcCCCHHHHHHHHHh
Confidence 5799999999999873 11 123667888 9999999 99999999999988887776
No 84
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=97.37 E-value=0.00054 Score=49.50 Aligned_cols=55 Identities=20% Similarity=0.215 Sum_probs=42.8
Q ss_pred ceEEEEecCCCccCCCC--------------------------CCCHHHHHHHHHhhCCCeEEEEEcCCCHHHHHHHhcC
Q psy16481 6 NTICLFDVDGTLTQPRQ--------------------------KAQNETLDFLLKKLKPLSHLAIVSGSDMNKVAEQLGG 59 (175)
Q Consensus 6 ~kli~~DlDGTLl~~~~--------------------------~i~~~~~~~~l~~l~~~i~~~iaTGR~~~~~~~~~~~ 59 (175)
++++++||||||+.... .+-|...+. |+.|++.+.++|+|..+...+...++.
T Consensus 2 k~~lvldld~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~pG~~e~-L~~L~~~~~l~I~Ts~~~~~~~~il~~ 80 (148)
T smart00577 2 KKTLVLDLDETLVHSTHRSFKEWTNRDFIVPVLIDGHPHGVYVKKRPGVDEF-LKRASELFELVVFTAGLRMYADPVLDL 80 (148)
T ss_pred CcEEEEeCCCCeECCCCCcCCCCCccceEEEEEeCCceEEEEEEECCCHHHH-HHHHHhccEEEEEeCCcHHHHHHHHHH
Confidence 67899999999999631 113456777 999984499999999999988777766
Q ss_pred CC
Q psy16481 60 EK 61 (175)
Q Consensus 60 ~~ 61 (175)
++
T Consensus 81 l~ 82 (148)
T smart00577 81 LD 82 (148)
T ss_pred hC
Confidence 54
No 85
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=97.35 E-value=0.00027 Score=51.66 Aligned_cols=45 Identities=13% Similarity=0.308 Sum_probs=37.3
Q ss_pred EEEEecCCCccCCCC-----------CCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHH
Q psy16481 8 ICLFDVDGTLTQPRQ-----------KAQNETLDFLLKKLKPL-SHLAIVSGSDMNKV 53 (175)
Q Consensus 8 li~~DlDGTLl~~~~-----------~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~ 53 (175)
.|++|+|||++.++- ...+...+. .++++++ ++++-.|+|+....
T Consensus 1 VVvsDIDGTiT~SD~~G~i~~~~G~d~~h~g~~~l-~~~i~~~GY~ilYlTaRp~~qa 57 (157)
T PF08235_consen 1 VVVSDIDGTITKSDVLGHILPILGKDWTHPGAAEL-YRKIADNGYKILYLTARPIGQA 57 (157)
T ss_pred CEEEeccCCcCccchhhhhhhccCchhhhhcHHHH-HHHHHHCCeEEEEECcCcHHHH
Confidence 489999999999851 345667777 9999999 99999999998754
No 86
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=97.33 E-value=0.00093 Score=53.06 Aligned_cols=72 Identities=25% Similarity=0.292 Sum_probs=52.9
Q ss_pred cceEEEEecCCCccCCCC--CC-CHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEEecCCceee
Q psy16481 5 ANTICLFDVDGTLTQPRQ--KA-QNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLVAY 78 (175)
Q Consensus 5 ~~kli~~DlDGTLl~~~~--~i-~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~~NGa~i~ 78 (175)
...+|+||||.||+++.. +| +|...+. |.+|+++ ..+++=|=.....+...+...++...++.+|| +|...-
T Consensus 121 ~phVIVfDlD~TLItd~~~v~Ir~~~v~~s-L~~Lk~~g~vLvLWSyG~~eHV~~sl~~~~L~~~Fd~ii~-~G~~~~ 196 (297)
T PF05152_consen 121 PPHVIVFDLDSTLITDEGDVRIRDPAVYDS-LRELKEQGCVLVLWSYGNREHVRHSLKELKLEGYFDIIIC-GGNKAG 196 (297)
T ss_pred CCcEEEEECCCcccccCCccccCChHHHHH-HHHHHHcCCEEEEecCCCHHHHHHHHHHhCCccccEEEEe-CCccCC
Confidence 457899999999998765 34 5677788 9999999 67777666666777667766666666776776 555443
No 87
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=97.33 E-value=0.00011 Score=54.68 Aligned_cols=34 Identities=18% Similarity=0.272 Sum_probs=25.6
Q ss_pred CCcceEEEEecCCCccCCCCCCCHHHHHHHHHhhC
Q psy16481 3 CRANTICLFDVDGTLTQPRQKAQNETLDFLLKKLK 37 (175)
Q Consensus 3 ~~~~kli~~DlDGTLl~~~~~i~~~~~~~~l~~l~ 37 (175)
++++|+|+||+||||+++.........++ +++..
T Consensus 2 ~~~~~~viFD~DGTLiDs~~~~~~a~~~~-~~~~g 35 (188)
T PRK10725 2 YDRYAGLIFDMDGTILDTEPTHRKAWREV-LGRYG 35 (188)
T ss_pred CCcceEEEEcCCCcCccCHHHHHHHHHHH-HHHcC
Confidence 45689999999999999876555555555 66543
No 88
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=97.32 E-value=0.00048 Score=59.59 Aligned_cols=45 Identities=24% Similarity=0.342 Sum_probs=36.1
Q ss_pred cceEEEEecCCCccCCCC-----------C-CCHHHHHHHHHhhCCC-eEEEEEcCCCH
Q psy16481 5 ANTICLFDVDGTLTQPRQ-----------K-AQNETLDFLLKKLKPL-SHLAIVSGSDM 50 (175)
Q Consensus 5 ~~kli~~DlDGTLl~~~~-----------~-i~~~~~~~~l~~l~~~-i~~~iaTGR~~ 50 (175)
+.|+++||+||||..... + +-+...++ |++|.++ +.++|+|.-+-
T Consensus 167 ~~Kia~fD~DGTLi~t~sg~~~~~~~~d~~~l~pgV~e~-L~~L~~~Gy~IvIvTNQ~g 224 (526)
T TIGR01663 167 QEKIAGFDLDGTIIKTKSGKVFPKGPDDWQIIFPEIPEK-LKELEADGFKICIFTNQGG 224 (526)
T ss_pred cCcEEEEECCCCccccCCCccCCCCHHHeeecccCHHHH-HHHHHHCCCEEEEEECCcc
Confidence 569999999999987431 1 35778888 9999999 99999996444
No 89
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=97.32 E-value=0.0005 Score=50.87 Aligned_cols=58 Identities=26% Similarity=0.298 Sum_probs=44.7
Q ss_pred CCcceEEEEecCCCccCCCC-CCCHHHHHHHHHhhCCC-e--EEEEEcCCC-------HHHHHHHhcCCC
Q psy16481 3 CRANTICLFDVDGTLTQPRQ-KAQNETLDFLLKKLKPL-S--HLAIVSGSD-------MNKVAEQLGGEK 61 (175)
Q Consensus 3 ~~~~kli~~DlDGTLl~~~~-~i~~~~~~~~l~~l~~~-i--~~~iaTGR~-------~~~~~~~~~~~~ 61 (175)
...+|.|+||.|.||+..+. +++++..+. ++++++. . .++|+|-.. ...+..+-+.++
T Consensus 38 ~~Gik~li~DkDNTL~~~~~~~i~~~~~~~-~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lg 106 (168)
T PF09419_consen 38 KKGIKALIFDKDNTLTPPYEDEIPPEYAEW-LNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALG 106 (168)
T ss_pred hcCceEEEEcCCCCCCCCCcCcCCHHHHHH-HHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhC
Confidence 35789999999999997665 999999999 9999987 4 599998763 444544444443
No 90
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=97.29 E-value=0.00059 Score=51.24 Aligned_cols=16 Identities=38% Similarity=0.411 Sum_probs=13.6
Q ss_pred ceEEEEecCCCccCCC
Q psy16481 6 NTICLFDVDGTLTQPR 21 (175)
Q Consensus 6 ~kli~~DlDGTLl~~~ 21 (175)
+|+|.||+||||++..
T Consensus 1 ik~viFD~dgTLiD~~ 16 (198)
T TIGR01428 1 IKALVFDVYGTLFDVH 16 (198)
T ss_pred CcEEEEeCCCcCccHH
Confidence 4789999999999843
No 91
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=97.24 E-value=0.00035 Score=58.10 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=25.4
Q ss_pred HHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEEe
Q psy16481 33 LKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFP 71 (175)
Q Consensus 33 l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~ 71 (175)
|+.|+++ ++++|+|+++...+...++..++...++.+++
T Consensus 225 L~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~~yFd~Iv~ 264 (381)
T PLN02575 225 VNVLMNYKIPMALVSTRPRKTLENAIGSIGIRGFFSVIVA 264 (381)
T ss_pred HHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCHHHceEEEe
Confidence 5556666 78888888887777777766655444444444
No 92
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=97.23 E-value=0.00064 Score=49.96 Aligned_cols=41 Identities=27% Similarity=0.382 Sum_probs=33.5
Q ss_pred eEEEEecCCCccCCCC-----------CCCHHHHHHHHHhhCCC-eEEEEEcCC
Q psy16481 7 TICLFDVDGTLTQPRQ-----------KAQNETLDFLLKKLKPL-SHLAIVSGS 48 (175)
Q Consensus 7 kli~~DlDGTLl~~~~-----------~i~~~~~~~~l~~l~~~-i~~~iaTGR 48 (175)
|.++||.||||..... .+-+...++ |++|+++ ++++++|-.
T Consensus 2 ~~~~~d~dg~l~~~~~~~~~~~~~~~~~~~pgv~e~-L~~L~~~g~~l~IvSN~ 54 (161)
T TIGR01261 2 KILFIDRDGTLIEEPPSDFQVDALEKLRFEKGVIPA-LLKLKKAGYKFVMVTNQ 54 (161)
T ss_pred CEEEEeCCCCccccCCCccccCCHHHeeECCCHHHH-HHHHHHCCCeEEEEeCC
Confidence 7899999999988422 334667898 9999999 999999974
No 93
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=97.20 E-value=0.0014 Score=51.22 Aligned_cols=34 Identities=3% Similarity=0.037 Sum_probs=24.0
Q ss_pred HHHHHHHhhCCC-eEEEEEcCCCHH----HHHHHhcCCCc
Q psy16481 28 TLDFLLKKLKPL-SHLAIVSGSDMN----KVAEQLGGEKV 62 (175)
Q Consensus 28 ~~~~~l~~l~~~-i~~~iaTGR~~~----~~~~~~~~~~~ 62 (175)
.++. |+.|+++ ++++++|||+.. .+..+++.+++
T Consensus 119 a~el-L~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gi 157 (237)
T PRK11009 119 ARQL-IDMHVKRGDSIYFITGRTATKTETVSKTLADDFHI 157 (237)
T ss_pred HHHH-HHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCC
Confidence 6777 9999888 999999999622 33444444444
No 94
>PTZ00445 p36-lilke protein; Provisional
Probab=97.16 E-value=0.00043 Score=52.86 Aligned_cols=46 Identities=20% Similarity=0.080 Sum_probs=37.9
Q ss_pred CcceEEEEecCCCccC-----CCCC----------CCHHHHHHHHHhhCCC-eEEEEEcCCCH
Q psy16481 4 RANTICLFDVDGTLTQ-----PRQK----------AQNETLDFLLKKLKPL-SHLAIVSGSDM 50 (175)
Q Consensus 4 ~~~kli~~DlDGTLl~-----~~~~----------i~~~~~~~~l~~l~~~-i~~~iaTGR~~ 50 (175)
..+|+|++|+|-||+. .... ++|+.+.. +++|++. +.++|+|=.+-
T Consensus 41 ~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~-~~~l~~~~I~v~VVTfSd~ 102 (219)
T PTZ00445 41 CGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKIL-GKRLKNSNIKISVVTFSDK 102 (219)
T ss_pred cCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHH-HHHHHHCCCeEEEEEccch
Confidence 3689999999999998 3332 78888887 9999998 99999996554
No 95
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=97.13 E-value=0.00024 Score=54.44 Aligned_cols=36 Identities=28% Similarity=0.360 Sum_probs=26.6
Q ss_pred CCCCcceEEEEecCCCccCCCCCCCHHHHHHHHHhhC
Q psy16481 1 MTCRANTICLFDVDGTLTQPRQKAQNETLDFLLKKLK 37 (175)
Q Consensus 1 ~~~~~~kli~~DlDGTLl~~~~~i~~~~~~~~l~~l~ 37 (175)
|++..+|.|+||+||||+++...+.....++ ++++.
T Consensus 2 ~~~~~~k~iiFD~DGTL~d~~~~~~~a~~~~-~~~~g 37 (222)
T PRK10826 2 STPRQILAAIFDMDGLLIDSEPLWDRAELDV-MASLG 37 (222)
T ss_pred CCcccCcEEEEcCCCCCCcCHHHHHHHHHHH-HHHCC
Confidence 5556799999999999999876555554555 65554
No 96
>PRK08238 hypothetical protein; Validated
Probab=97.11 E-value=0.0013 Score=56.47 Aligned_cols=47 Identities=26% Similarity=0.398 Sum_probs=37.0
Q ss_pred CHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEEecCCc
Q psy16481 25 QNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGL 75 (175)
Q Consensus 25 ~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~~NGa 75 (175)
.+...+. |++++++ .++++|||.+...+...++.+|+ ++.+++.++.
T Consensus 74 ~pga~e~-L~~lk~~G~~v~LaTas~~~~a~~i~~~lGl---Fd~Vigsd~~ 121 (479)
T PRK08238 74 NEEVLDY-LRAERAAGRKLVLATASDERLAQAVAAHLGL---FDGVFASDGT 121 (479)
T ss_pred ChhHHHH-HHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC---CCEEEeCCCc
Confidence 3567788 9999999 99999999999888877777653 4567776654
No 97
>PRK11587 putative phosphatase; Provisional
Probab=97.10 E-value=0.00023 Score=54.48 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=24.0
Q ss_pred cceEEEEecCCCccCCCCCCCHHHHHHHHHhhC
Q psy16481 5 ANTICLFDVDGTLTQPRQKAQNETLDFLLKKLK 37 (175)
Q Consensus 5 ~~kli~~DlDGTLl~~~~~i~~~~~~~~l~~l~ 37 (175)
++|.|+|||||||+++...+.....++ ++++.
T Consensus 2 ~~k~viFDlDGTL~Ds~~~~~~a~~~~-~~~~g 33 (218)
T PRK11587 2 RCKGFLFDLDGTLVDSLPAVERAWSNW-ADRHG 33 (218)
T ss_pred CCCEEEEcCCCCcCcCHHHHHHHHHHH-HHHcC
Confidence 478999999999999876555555555 66544
No 98
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=97.10 E-value=0.0013 Score=51.07 Aligned_cols=48 Identities=27% Similarity=0.294 Sum_probs=38.0
Q ss_pred CcceEEEEecCCCccCCC--------------------------CCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHH
Q psy16481 4 RANTICLFDVDGTLTQPR--------------------------QKAQNETLDFLLKKLKPL-SHLAIVSGSDMNK 52 (175)
Q Consensus 4 ~~~kli~~DlDGTLl~~~--------------------------~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~ 52 (175)
..+-+++||+|.|+|.+- .+.-+.++++ ++.|+++ +.++++|||+...
T Consensus 75 dg~~A~V~DIDET~LsN~py~~~~~~g~~~~~~~~~~~wv~~~~apaip~al~l-~~~l~~~G~~Vf~lTGR~e~~ 149 (229)
T TIGR01675 75 DGMDAWIFDVDDTLLSNIPYYKKHGYGTEKTDPTAFWLWLGKGAAPALPEGLKL-YQKIIELGIKIFLLSGRWEEL 149 (229)
T ss_pred CCCcEEEEccccccccCHHHHHHhccCCCcCCHHHHHHHHHcCCCCCCHHHHHH-HHHHHHCCCEEEEEcCCChHH
Confidence 356789999999999832 1234556778 9999999 9999999999765
No 99
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=97.09 E-value=0.0012 Score=48.76 Aligned_cols=38 Identities=13% Similarity=0.140 Sum_probs=21.8
Q ss_pred HHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEE
Q psy16481 33 LKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVF 70 (175)
Q Consensus 33 l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i 70 (175)
|+.|+++ +.++++|+.....+...+...++...++.++
T Consensus 81 l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~i~ 119 (188)
T TIGR01489 81 IAFIKEHGIDFIVISDGNDFFIDPVLEGIGEKDVFIEIY 119 (188)
T ss_pred HHHHHHcCCcEEEEeCCcHHHHHHHHHHcCChhheeEEe
Confidence 4555555 7777777777666666655544433233344
No 100
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=97.07 E-value=0.00032 Score=54.59 Aligned_cols=33 Identities=21% Similarity=0.167 Sum_probs=23.9
Q ss_pred CCcceEEEEecCCCccCCCCCCCHHHHHHHHHhh
Q psy16481 3 CRANTICLFDVDGTLTQPRQKAQNETLDFLLKKL 36 (175)
Q Consensus 3 ~~~~kli~~DlDGTLl~~~~~i~~~~~~~~l~~l 36 (175)
..++|+|+||+||||+++..-+.....++ ++.+
T Consensus 7 ~~~~k~iiFDlDGTL~D~~~~~~~a~~~~-~~~~ 39 (238)
T PRK10748 7 LGRISALTFDLDDTLYDNRPVILRTEQEA-LAFV 39 (238)
T ss_pred CCCceeEEEcCcccccCChHHHHHHHHHH-HHHH
Confidence 45679999999999999876555544444 4444
No 101
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=97.07 E-value=0.0022 Score=51.00 Aligned_cols=57 Identities=18% Similarity=0.177 Sum_probs=40.2
Q ss_pred cceEEEEecCCCccCCC----------CCCCH----------------HHHHHHHHhhCCC-eEEEEEcCCCHHHH---H
Q psy16481 5 ANTICLFDVDGTLTQPR----------QKAQN----------------ETLDFLLKKLKPL-SHLAIVSGSDMNKV---A 54 (175)
Q Consensus 5 ~~kli~~DlDGTLl~~~----------~~i~~----------------~~~~~~l~~l~~~-i~~~iaTGR~~~~~---~ 54 (175)
+..+|+||+|+|+|++. ...++ ...+. |+.|.++ +.++++|+|+.... .
T Consensus 74 kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~~w~~wv~~~~a~~ipGA~e~-L~~L~~~G~~v~iVTnR~~~~~~~T~ 152 (266)
T TIGR01533 74 KKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPETWDKWVQAAQAKPVAGALDF-LNYANSKGVKIFYVSNRSEKEKAATL 152 (266)
T ss_pred CCCEEEEeCccccccChHHHHHHhcCCCcCCHHHHHHHHHcCCCCcCccHHHH-HHHHHHCCCeEEEEeCCCcchHHHHH
Confidence 45799999999998643 23333 34566 8899888 99999999985433 3
Q ss_pred HHhcCCCc
Q psy16481 55 EQLGGEKV 62 (175)
Q Consensus 55 ~~~~~~~~ 62 (175)
..+...|+
T Consensus 153 ~~Lkk~Gi 160 (266)
T TIGR01533 153 KNLKRFGF 160 (266)
T ss_pred HHHHHcCc
Confidence 44555544
No 102
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=97.07 E-value=0.0012 Score=53.84 Aligned_cols=53 Identities=23% Similarity=0.258 Sum_probs=38.0
Q ss_pred EEEEecCCCccCCCCCCCHHHHHHHHHhhCC-----CeEEEEEc---CCCHHHHHHHh-cCCCc
Q psy16481 8 ICLFDVDGTLTQPRQKAQNETLDFLLKKLKP-----LSHLAIVS---GSDMNKVAEQL-GGEKV 62 (175)
Q Consensus 8 li~~DlDGTLl~~~~~i~~~~~~~~l~~l~~-----~i~~~iaT---GR~~~~~~~~~-~~~~~ 62 (175)
.++||+||||++.+.. -+...++ |++|++ .+.+.+.| |++.......+ ..+|+
T Consensus 2 ~~ifD~DGvL~~g~~~-i~ga~ea-l~~L~~~~~~~g~~~~flTNn~g~s~~~~~~~l~~~lG~ 63 (321)
T TIGR01456 2 GFAFDIDGVLFRGKKP-IAGASDA-LRRLNRNQGQLKIPYIFLTNGGGFSERARAEEISSLLGV 63 (321)
T ss_pred EEEEeCcCceECCccc-cHHHHHH-HHHHhccccccCCCEEEEecCCCCCHHHHHHHHHHHcCC
Confidence 5899999999998765 6777899 988887 55555555 66777655544 44443
No 103
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=97.02 E-value=0.00061 Score=53.81 Aligned_cols=33 Identities=15% Similarity=0.143 Sum_probs=22.7
Q ss_pred CCcceEEEEecCCCccCCCCCC-CHHHHHHHHHhh
Q psy16481 3 CRANTICLFDVDGTLTQPRQKA-QNETLDFLLKKL 36 (175)
Q Consensus 3 ~~~~kli~~DlDGTLl~~~~~i-~~~~~~~~l~~l 36 (175)
|.++|+|+||+||||+++.... .....++ +++.
T Consensus 1 ~~~~k~vIFDlDGTLiDs~~~~~~~a~~~~-~~~~ 34 (267)
T PRK13478 1 MMKIQAVIFDWAGTTVDFGSFAPTQAFVEA-FAQF 34 (267)
T ss_pred CCceEEEEEcCCCCeecCCCccHHHHHHHH-HHHc
Confidence 3468999999999999985432 2344444 5554
No 104
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=96.90 E-value=0.0019 Score=47.29 Aligned_cols=30 Identities=23% Similarity=0.019 Sum_probs=23.3
Q ss_pred HHhhCCC-eEEEEEcCCCHHHHHHHhcCCCc
Q psy16481 33 LKKLKPL-SHLAIVSGSDMNKVAEQLGGEKV 62 (175)
Q Consensus 33 l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~ 62 (175)
|+.++++ +.++|+||.....+...++.+++
T Consensus 82 l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~ 112 (177)
T TIGR01488 82 ISWLKERGIDTVIVSGGFDFFVEPVAEKLGI 112 (177)
T ss_pred HHHHHHCCCEEEEECCCcHHHHHHHHHHcCC
Confidence 5666667 89999999988888777776654
No 105
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=96.89 E-value=0.00043 Score=54.22 Aligned_cols=32 Identities=28% Similarity=0.380 Sum_probs=24.4
Q ss_pred CcceEEEEecCCCccCCCCCCCHHHHHHHHHhh
Q psy16481 4 RANTICLFDVDGTLTQPRQKAQNETLDFLLKKL 36 (175)
Q Consensus 4 ~~~kli~~DlDGTLl~~~~~i~~~~~~~~l~~l 36 (175)
.++|.|+|||||||+++...+-....++ ++++
T Consensus 20 ~~~k~viFDlDGTLiDs~~~~~~a~~~~-~~~~ 51 (248)
T PLN02770 20 APLEAVLFDVDGTLCDSDPLHYYAFREM-LQEI 51 (248)
T ss_pred CccCEEEEcCCCccCcCHHHHHHHHHHH-HHHh
Confidence 4679999999999999876555555555 6665
No 106
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=96.88 E-value=0.00066 Score=51.81 Aligned_cols=30 Identities=10% Similarity=0.115 Sum_probs=23.0
Q ss_pred ceEEEEecCCCccCCCCCCCHHHHHHHHHhh
Q psy16481 6 NTICLFDVDGTLTQPRQKAQNETLDFLLKKL 36 (175)
Q Consensus 6 ~kli~~DlDGTLl~~~~~i~~~~~~~~l~~l 36 (175)
+|+|+||+||||+++.........++ +++.
T Consensus 1 ~k~iiFD~DGTL~ds~~~~~~~~~~~-~~~~ 30 (220)
T TIGR03351 1 ISLVVLDMAGTTVDEDGLVYRALRQA-VTAA 30 (220)
T ss_pred CcEEEEecCCCeeccCchHHHHHHHH-HHHc
Confidence 58999999999999887665555555 6554
No 107
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=96.81 E-value=0.00083 Score=50.61 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=21.7
Q ss_pred eEEEEecCCCccCCCCCCCHHHHHHHHHhh
Q psy16481 7 TICLFDVDGTLTQPRQKAQNETLDFLLKKL 36 (175)
Q Consensus 7 kli~~DlDGTLl~~~~~i~~~~~~~~l~~l 36 (175)
|+|+||+||||+++.........++ +++.
T Consensus 1 k~viFDlDGTL~d~~~~~~~a~~~~-~~~~ 29 (203)
T TIGR02252 1 KLITFDAVGTLLALKEPVGEVYCEI-ARKY 29 (203)
T ss_pred CeEEEecCCceeeeCCCHHHHHHHH-HHHh
Confidence 6899999999999876665555555 5544
No 108
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=96.79 E-value=0.00079 Score=51.76 Aligned_cols=34 Identities=26% Similarity=0.263 Sum_probs=26.7
Q ss_pred CcceEEEEecCCCccCCCCCCCHHHHHHHHHhhCC
Q psy16481 4 RANTICLFDVDGTLTQPRQKAQNETLDFLLKKLKP 38 (175)
Q Consensus 4 ~~~kli~~DlDGTLl~~~~~i~~~~~~~~l~~l~~ 38 (175)
..++.|+||+||||+++...+......+ ++++.-
T Consensus 2 ~~~~~iiFDlDGTL~Ds~~~~~~~~~~~-~~~~~~ 35 (220)
T COG0546 2 MMIKAILFDLDGTLVDSAEDILRAFNAA-LAELGL 35 (220)
T ss_pred CCCCEEEEeCCCccccChHHHHHHHHHH-HHHcCC
Confidence 4689999999999999987776666666 666543
No 109
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=96.77 E-value=0.00099 Score=48.42 Aligned_cols=52 Identities=21% Similarity=0.301 Sum_probs=35.9
Q ss_pred eEEEEecCCCccCCCCC-------------------CCHHHHHHHHHhhCCCeEEEEEcCCCHHHHHHHhcC
Q psy16481 7 TICLFDVDGTLTQPRQK-------------------AQNETLDFLLKKLKPLSHLAIVSGSDMNKVAEQLGG 59 (175)
Q Consensus 7 kli~~DlDGTLl~~~~~-------------------i~~~~~~~~l~~l~~~i~~~iaTGR~~~~~~~~~~~ 59 (175)
|++++||||||+.+... +=|...+. |+.+.+...++|.|..+..-+...+..
T Consensus 1 k~LVlDLD~TLv~~~~~~~~~~~~~~~~~~~~~~v~~RP~l~~F-L~~l~~~~ev~i~T~~~~~ya~~v~~~ 71 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPLPYDFKIIDQRGGYYVKLRPGLDEF-LEELSKHYEVVIWTSASEEYAEPVLDA 71 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCTT-SEEEETEEEEEEEEE-TTHHHH-HHHHHHHCEEEEE-SS-HHHHHHHHHH
T ss_pred CEEEEeCCCcEEEEeecCCCCcccceeccccceeEeeCchHHHH-HHHHHHhceEEEEEeehhhhhhHHHHh
Confidence 78999999999985432 34667777 998855599999999887766555443
No 110
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=96.74 E-value=0.00066 Score=50.16 Aligned_cols=18 Identities=22% Similarity=0.486 Sum_probs=15.7
Q ss_pred ceEEEEecCCCccCCCCC
Q psy16481 6 NTICLFDVDGTLTQPRQK 23 (175)
Q Consensus 6 ~kli~~DlDGTLl~~~~~ 23 (175)
+|+|+||+||||+++...
T Consensus 1 ~~~iiFD~DGTL~ds~~~ 18 (185)
T TIGR02009 1 YKAVIFDMDGVIVDTAPL 18 (185)
T ss_pred CCeEEEcCCCcccCChHH
Confidence 589999999999999753
No 111
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=96.72 E-value=0.00062 Score=51.22 Aligned_cols=29 Identities=17% Similarity=0.381 Sum_probs=23.0
Q ss_pred EEEEecCCCccCCCCCCCHHHHHHHHHhhC
Q psy16481 8 ICLFDVDGTLTQPRQKAQNETLDFLLKKLK 37 (175)
Q Consensus 8 li~~DlDGTLl~~~~~i~~~~~~~~l~~l~ 37 (175)
+|+|||||||+++..-+-....++ ++++.
T Consensus 2 ~viFD~DGTLiDs~~~~~~a~~~~-~~~~g 30 (197)
T TIGR01548 2 ALVLDMDGVMADVSQSYRRAIIDT-VEHFG 30 (197)
T ss_pred ceEEecCceEEechHHHHHHHHHH-HHHHc
Confidence 689999999999987666666666 77654
No 112
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=96.71 E-value=0.0023 Score=47.88 Aligned_cols=46 Identities=22% Similarity=0.287 Sum_probs=38.6
Q ss_pred ceEEEEecCCCccCCCC---------CCCHHHHHHHHHhhCCC-eEEEEEc-----CCCHHH
Q psy16481 6 NTICLFDVDGTLTQPRQ---------KAQNETLDFLLKKLKPL-SHLAIVS-----GSDMNK 52 (175)
Q Consensus 6 ~kli~~DlDGTLl~~~~---------~i~~~~~~~~l~~l~~~-i~~~iaT-----GR~~~~ 52 (175)
.|++|+|-||||..+.. .+.+...++ +.+|++. .++|++| ||.+..
T Consensus 5 ~k~lflDRDGtin~d~~~yv~~~~~~~~~~g~i~a-l~~l~~~gy~lVvvTNQsGi~rgyf~ 65 (181)
T COG0241 5 QKALFLDRDGTINIDKGDYVDSLDDFQFIPGVIPA-LLKLQRAGYKLVVVTNQSGIGRGYFT 65 (181)
T ss_pred CcEEEEcCCCceecCCCcccCcHHHhccCccHHHH-HHHHHhCCCeEEEEECCCCccccCcc
Confidence 78999999999977544 556778999 9999988 9999999 677764
No 113
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=96.69 E-value=0.0025 Score=47.21 Aligned_cols=56 Identities=27% Similarity=0.294 Sum_probs=34.1
Q ss_pred ceEEEEecCCCccCCCC-------------------------CCCHHHHHHHHHhhCCC-eEEEEEcCCCHH-HHHHHhc
Q psy16481 6 NTICLFDVDGTLTQPRQ-------------------------KAQNETLDFLLKKLKPL-SHLAIVSGSDMN-KVAEQLG 58 (175)
Q Consensus 6 ~kli~~DlDGTLl~~~~-------------------------~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~-~~~~~~~ 58 (175)
.|||+||||+||.+..- ++=+...+. |+.|+++ +++++||=-+.. .+++.++
T Consensus 3 PklvvFDLD~TlW~~~~~~~~~~Pf~~~~~~~~v~D~~g~~v~lypdv~~i-L~~L~~~gv~lavASRt~~P~~A~~~L~ 81 (169)
T PF12689_consen 3 PKLVVFDLDYTLWPPWMDTHVGPPFKKISNGNVVVDSRGEEVSLYPDVPEI-LQELKERGVKLAVASRTDEPDWARELLK 81 (169)
T ss_dssp -SEEEE-STTTSSSS-TTTSS-S-EEE-TTS--EEETT--EE---TTHHHH-HHHHHHCT--EEEEE--S-HHHHHHHHH
T ss_pred CcEEEEcCcCCCCchhHhhccCCCceecCCCCEEEeCCCCEEEeCcCHHHH-HHHHHHCCCEEEEEECCCChHHHHHHHH
Confidence 58999999999988321 233456777 9999999 999999965444 4556666
Q ss_pred CCCc
Q psy16481 59 GEKV 62 (175)
Q Consensus 59 ~~~~ 62 (175)
.+++
T Consensus 82 ~l~i 85 (169)
T PF12689_consen 82 LLEI 85 (169)
T ss_dssp HTT-
T ss_pred hcCC
Confidence 6543
No 114
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=96.67 E-value=0.0018 Score=49.37 Aligned_cols=32 Identities=22% Similarity=0.266 Sum_probs=23.2
Q ss_pred ceEEEEecCCCccCCCCCCCHHHHHHHHHhhCC
Q psy16481 6 NTICLFDVDGTLTQPRQKAQNETLDFLLKKLKP 38 (175)
Q Consensus 6 ~kli~~DlDGTLl~~~~~i~~~~~~~~l~~l~~ 38 (175)
+|+|.||+||||+++...+......+ .+.+.+
T Consensus 2 ~~~viFDlDGTL~ds~~~~~~~~~~~-~~~~~~ 33 (221)
T TIGR02253 2 IKAIFFDLDDTLIDTSGLAEKARRNA-IEVLIE 33 (221)
T ss_pred ceEEEEeCCCCCcCCCCccCHHHHHH-HHHHHH
Confidence 68999999999999987665554444 444433
No 115
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=96.65 E-value=0.0028 Score=48.53 Aligned_cols=28 Identities=25% Similarity=0.093 Sum_probs=22.5
Q ss_pred HHhhCCC-eEEEEEcCCCHHHHHHHhcCC
Q psy16481 33 LKKLKPL-SHLAIVSGSDMNKVAEQLGGE 60 (175)
Q Consensus 33 l~~l~~~-i~~~iaTGR~~~~~~~~~~~~ 60 (175)
|+.++++ ++++|+||.....+...++.+
T Consensus 83 l~~l~~~g~~~~IvS~~~~~~i~~il~~~ 111 (219)
T PRK09552 83 VQFVKENNIPFYVVSGGMDFFVYPLLQGL 111 (219)
T ss_pred HHHHHHcCCeEEEECCCcHHHHHHHHHHh
Confidence 6667777 999999999988887777664
No 116
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=96.62 E-value=0.003 Score=52.17 Aligned_cols=43 Identities=26% Similarity=0.318 Sum_probs=36.7
Q ss_pred cceEEEEecCCCccCCC-----------CCCCHHHHHHHHHhhCCC-eEEEEEcCC
Q psy16481 5 ANTICLFDVDGTLTQPR-----------QKAQNETLDFLLKKLKPL-SHLAIVSGS 48 (175)
Q Consensus 5 ~~kli~~DlDGTLl~~~-----------~~i~~~~~~~~l~~l~~~-i~~~iaTGR 48 (175)
++|++++|-||||.... ..+-|...+. |++|+++ ++++|+|..
T Consensus 1 ~~k~l~lDrDgtl~~~~~~~y~~~~~~~~~l~pGV~e~-L~~Lk~~G~kL~IvTNq 55 (354)
T PRK05446 1 MQKILFIDRDGTLIEEPPTDFQVDSLDKLAFEPGVIPA-LLKLQKAGYKLVMVTNQ 55 (354)
T ss_pred CCcEEEEeCCCCccCCCCccccccCcccceECcCHHHH-HHHHHhCCCeEEEEECC
Confidence 46899999999999852 3567778899 9999998 999999984
No 117
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=96.61 E-value=0.0019 Score=50.44 Aligned_cols=31 Identities=13% Similarity=0.154 Sum_probs=21.3
Q ss_pred cceEEEEecCCCccCCCCC-CCHHHHHHHHHhh
Q psy16481 5 ANTICLFDVDGTLTQPRQK-AQNETLDFLLKKL 36 (175)
Q Consensus 5 ~~kli~~DlDGTLl~~~~~-i~~~~~~~~l~~l 36 (175)
++|.|+||+||||+++... ......++ +++.
T Consensus 1 ~~k~viFD~DGTLiDs~~~~~~~a~~~~-~~~~ 32 (253)
T TIGR01422 1 KIEAVIFDWAGTTVDFGSFAPTQAFVEA-FAEF 32 (253)
T ss_pred CceEEEEeCCCCeecCCCccHHHHHHHH-HHHc
Confidence 3789999999999998543 23344445 5543
No 118
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=96.60 E-value=0.0013 Score=50.31 Aligned_cols=19 Identities=32% Similarity=0.485 Sum_probs=16.4
Q ss_pred CcceEEEEecCCCccCCCC
Q psy16481 4 RANTICLFDVDGTLTQPRQ 22 (175)
Q Consensus 4 ~~~kli~~DlDGTLl~~~~ 22 (175)
.++|+|+||+||||+++..
T Consensus 2 ~~~~~viFD~DGTL~d~~~ 20 (221)
T PRK10563 2 SQIEAVFFDCDGTLVDSEV 20 (221)
T ss_pred CCCCEEEECCCCCCCCChH
Confidence 3589999999999999754
No 119
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=96.59 E-value=0.0011 Score=53.19 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=24.1
Q ss_pred CCcceEEEEecCCCccCCC-CCCCHHHHHHHHHhhC
Q psy16481 3 CRANTICLFDVDGTLTQPR-QKAQNETLDFLLKKLK 37 (175)
Q Consensus 3 ~~~~kli~~DlDGTLl~~~-~~i~~~~~~~~l~~l~ 37 (175)
++.+|+|+|||||||+++. .-......++ ++++.
T Consensus 37 ~~~~k~VIFDlDGTLvDS~~~~~~~a~~~~-l~~~G 71 (286)
T PLN02779 37 SALPEALLFDCDGVLVETERDGHRVAFNDA-FKEFG 71 (286)
T ss_pred ccCCcEEEEeCceeEEccccHHHHHHHHHH-HHHcC
Confidence 3467999999999999997 5444444555 66543
No 120
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=96.58 E-value=0.0013 Score=50.08 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=21.0
Q ss_pred ceEEEEecCCCccCCCCCCCHHHHHHHHHh
Q psy16481 6 NTICLFDVDGTLTQPRQKAQNETLDFLLKK 35 (175)
Q Consensus 6 ~kli~~DlDGTLl~~~~~i~~~~~~~~l~~ 35 (175)
+|+|+||+||||+++.........++ +++
T Consensus 1 ~k~viFD~DGTL~d~~~~~~~~~~~~-~~~ 29 (224)
T TIGR02254 1 YKTLLFDLDDTILDFQAAEALALRLL-FED 29 (224)
T ss_pred CCEEEEcCcCcccccchHHHHHHHHH-HHH
Confidence 58999999999999876554444444 443
No 121
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=96.54 E-value=0.00095 Score=53.07 Aligned_cols=31 Identities=26% Similarity=0.406 Sum_probs=21.3
Q ss_pred CcceEEEEecCCCccCCCCCCCHHHHHHHHHh
Q psy16481 4 RANTICLFDVDGTLTQPRQKAQNETLDFLLKK 35 (175)
Q Consensus 4 ~~~kli~~DlDGTLl~~~~~i~~~~~~~~l~~ 35 (175)
.=+|+|+|||||||+++...+.....++ +++
T Consensus 11 ~~~k~viFDlDGTL~Ds~~~~~~a~~~~-~~~ 41 (272)
T PRK13223 11 RLPRLVMFDLDGTLVDSVPDLAAAVDRM-LLE 41 (272)
T ss_pred ccCCEEEEcCCCccccCHHHHHHHHHHH-HHH
Confidence 3468999999999999866444333333 443
No 122
>PRK11590 hypothetical protein; Provisional
Probab=96.53 E-value=0.0021 Score=49.08 Aligned_cols=20 Identities=40% Similarity=0.728 Sum_probs=16.8
Q ss_pred CCCCcceEEEEecCCCccCC
Q psy16481 1 MTCRANTICLFDVDGTLTQP 20 (175)
Q Consensus 1 ~~~~~~kli~~DlDGTLl~~ 20 (175)
|...+.|+++||+||||+..
T Consensus 1 ~~~~~~k~~iFD~DGTL~~~ 20 (211)
T PRK11590 1 MATHERRVVFFDLDGTLHQQ 20 (211)
T ss_pred CCCccceEEEEecCCCCccc
Confidence 55668899999999999943
No 123
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=96.38 E-value=0.0014 Score=50.59 Aligned_cols=31 Identities=26% Similarity=0.309 Sum_probs=22.6
Q ss_pred ceEEEEecCCCccCCCCCCCHHHHHHHHHhhC
Q psy16481 6 NTICLFDVDGTLTQPRQKAQNETLDFLLKKLK 37 (175)
Q Consensus 6 ~kli~~DlDGTLl~~~~~i~~~~~~~~l~~l~ 37 (175)
.|.|+||+||||+++..-+......+ +++..
T Consensus 12 ~k~viFD~DGTL~Ds~~~~~~a~~~~-~~~~g 42 (229)
T PRK13226 12 PRAVLFDLDGTLLDSAPDMLATVNAM-LAARG 42 (229)
T ss_pred CCEEEEcCcCccccCHHHHHHHHHHH-HHHCC
Confidence 37899999999999876555555555 55543
No 124
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=96.35 E-value=0.0013 Score=51.05 Aligned_cols=47 Identities=15% Similarity=0.265 Sum_probs=35.9
Q ss_pred cceEEEEecCCCccCCCC--------------------------CCCHHHHHHHHHhhCCC-eEEEEEcCCCHHH
Q psy16481 5 ANTICLFDVDGTLTQPRQ--------------------------KAQNETLDFLLKKLKPL-SHLAIVSGSDMNK 52 (175)
Q Consensus 5 ~~kli~~DlDGTLl~~~~--------------------------~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~ 52 (175)
+...|+||+|+|+|++-. ..-|...+. ++.+.++ +.|+++|||+-..
T Consensus 71 ~~~avv~DIDeTvLsn~~y~~~~~~~~~~~~~~~w~~wv~~~~~~aip~a~~l-~~~~~~~G~~V~~iT~R~~~~ 144 (229)
T PF03767_consen 71 KPPAVVFDIDETVLSNSPYYAYLIFGGESFSPEDWDEWVASGKAPAIPGALEL-YNYARSRGVKVFFITGRPESQ 144 (229)
T ss_dssp SEEEEEEESBTTTEEHHHHHHHHHHHTHHH-CCHHHHHHHCTGGEEETTHHHH-HHHHHHTTEEEEEEEEEETTC
T ss_pred CCcEEEEECCcccccCHHHHHHHhhccCCCChHHHHHHHhcccCcccHHHHHH-HHHHHHCCCeEEEEecCCchh
Confidence 567899999999986210 112336677 8999999 9999999999774
No 125
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=96.32 E-value=0.025 Score=44.17 Aligned_cols=57 Identities=19% Similarity=0.233 Sum_probs=38.9
Q ss_pred CHHHHHHHHHhh--CCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEEecCCceeeeCCeE
Q psy16481 25 QNETLDFLLKKL--KPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLVAYKNGKL 83 (175)
Q Consensus 25 ~~~~~~~~l~~l--~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~~NGa~i~~~~~~ 83 (175)
++...++ ++.+ .+. +.++|+|--.-..+...++..|+...+..+++ |-+.+-.+|..
T Consensus 73 ~pgm~~~-l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~~~f~~I~T-Npa~~~~~G~l 132 (234)
T PF06888_consen 73 DPGMKEL-LRFLAKNQRGFDLIIISDANSFFIETILEHHGLRDCFSEIFT-NPACFDADGRL 132 (234)
T ss_pred CccHHHH-HHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCccccceEEe-CCceecCCceE
Confidence 3335666 7788 345 99999998888889999988776554545555 66655445543
No 126
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=96.28 E-value=0.0035 Score=46.51 Aligned_cols=24 Identities=21% Similarity=0.166 Sum_probs=18.5
Q ss_pred EEEEecCCCccCCCCCCCHHHHHH
Q psy16481 8 ICLFDVDGTLTQPRQKAQNETLDF 31 (175)
Q Consensus 8 li~~DlDGTLl~~~~~i~~~~~~~ 31 (175)
+|+|||||||+++...+-....++
T Consensus 2 ~viFDlDGTL~ds~~~~~~~~~~~ 25 (184)
T TIGR01993 2 VWFFDLDNTLYPHSAGIFLQIDRN 25 (184)
T ss_pred eEEEeCCCCCCCCcccHHHHHHHH
Confidence 689999999999876665555544
No 127
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=96.25 E-value=0.0021 Score=49.51 Aligned_cols=32 Identities=28% Similarity=0.383 Sum_probs=21.7
Q ss_pred cceEEEEecCCCccCCCCCCCHHHHHHHHHhhC
Q psy16481 5 ANTICLFDVDGTLTQPRQKAQNETLDFLLKKLK 37 (175)
Q Consensus 5 ~~kli~~DlDGTLl~~~~~i~~~~~~~~l~~l~ 37 (175)
.+|.+.|||||||+++..-......++ +++..
T Consensus 1 ~~~avIFD~DGvLvDse~~~~~a~~~~-~~~~g 32 (221)
T COG0637 1 MIKAVIFDMDGTLVDSEPLHARAWLEA-LKEYG 32 (221)
T ss_pred CCcEEEEcCCCCcCcchHHHHHHHHHH-HHHcC
Confidence 368999999999999954333333344 55544
No 128
>COG4996 Predicted phosphatase [General function prediction only]
Probab=96.24 E-value=0.013 Score=41.57 Aligned_cols=63 Identities=21% Similarity=0.228 Sum_probs=45.7
Q ss_pred eEEEEecCCCccCCCC------------------------CCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCC
Q psy16481 7 TICLFDVDGTLTQPRQ------------------------KAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEK 61 (175)
Q Consensus 7 kli~~DlDGTLl~~~~------------------------~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~ 61 (175)
++|+||.||||.+... .+-+..++. ++.++.. ..+..+|=+....+.+.+..++
T Consensus 1 ~~i~~d~d~t~wdhh~iSsl~pPf~rVs~n~i~Ds~G~ev~L~~~v~~~-l~warnsG~i~~~~sWN~~~kA~~aLral~ 79 (164)
T COG4996 1 RAIVFDADKTLWDHHNISSLEPPFRRVSSNTIEDSKGREVHLFPDVKET-LKWARNSGYILGLASWNFEDKAIKALRALD 79 (164)
T ss_pred CcEEEeCCCcccccccchhcCCcceecCccceecCCCeEEEEcHHHHHH-HHHHHhCCcEEEEeecCchHHHHHHHHHhc
Confidence 4799999999998432 123456777 9999988 9999999998888777666655
Q ss_pred cccccceEE
Q psy16481 62 VLEQFDFVF 70 (175)
Q Consensus 62 ~~~~~~~~i 70 (175)
+...+.|++
T Consensus 80 ~~~yFhy~V 88 (164)
T COG4996 80 LLQYFHYIV 88 (164)
T ss_pred hhhhEEEEE
Confidence 444444443
No 129
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=96.10 E-value=0.008 Score=47.77 Aligned_cols=47 Identities=32% Similarity=0.402 Sum_probs=34.6
Q ss_pred cceEEEEecCCCccCC----------CC-----------------CCCHHHHHHHHHhhCCC-eEEEEEcCCCHHH
Q psy16481 5 ANTICLFDVDGTLTQP----------RQ-----------------KAQNETLDFLLKKLKPL-SHLAIVSGSDMNK 52 (175)
Q Consensus 5 ~~kli~~DlDGTLl~~----------~~-----------------~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~ 52 (175)
..-+++||+|+|+|++ .. +.-+.+++. .+.++++ +.++++|||+-..
T Consensus 100 ~~dA~V~DIDET~LsN~pY~~~~~~g~e~~~~~~w~~~Wv~~~~ApAlp~al~l-y~~l~~~G~kIf~VSgR~e~~ 174 (275)
T TIGR01680 100 EKDTFLFNIDGTALSNIPYYKKHGYGSEKFDSELYDEEFVNKGEAPALPETLKN-YNKLVSLGFKIIFLSGRLKDK 174 (275)
T ss_pred CCCEEEEECccccccCHHHHHHhcCCCCcCChhhhhHHHHhcccCCCChHHHHH-HHHHHHCCCEEEEEeCCchhH
Confidence 4578999999999931 01 122455666 8888888 9999999998643
No 130
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=96.05 E-value=0.0038 Score=46.64 Aligned_cols=16 Identities=44% Similarity=0.688 Sum_probs=14.5
Q ss_pred ceEEEEecCCCccCCC
Q psy16481 6 NTICLFDVDGTLTQPR 21 (175)
Q Consensus 6 ~kli~~DlDGTLl~~~ 21 (175)
+|+|+||+||||++.+
T Consensus 4 ~k~viFD~DGTLid~~ 19 (201)
T TIGR01491 4 IKLIIFDLDGTLTDVM 19 (201)
T ss_pred ceEEEEeCCCCCcCCc
Confidence 7899999999999864
No 131
>PHA02597 30.2 hypothetical protein; Provisional
Probab=96.04 E-value=0.0029 Score=47.44 Aligned_cols=16 Identities=38% Similarity=0.414 Sum_probs=14.3
Q ss_pred ceEEEEecCCCccCCC
Q psy16481 6 NTICLFDVDGTLTQPR 21 (175)
Q Consensus 6 ~kli~~DlDGTLl~~~ 21 (175)
+|+|+|||||||++..
T Consensus 2 ~k~viFDlDGTLiD~~ 17 (197)
T PHA02597 2 KPTILTDVDGVLLSWQ 17 (197)
T ss_pred CcEEEEecCCceEchh
Confidence 6899999999999944
No 132
>PRK09449 dUMP phosphatase; Provisional
Probab=95.97 E-value=0.0067 Score=46.34 Aligned_cols=17 Identities=35% Similarity=0.323 Sum_probs=14.6
Q ss_pred cceEEEEecCCCccCCC
Q psy16481 5 ANTICLFDVDGTLTQPR 21 (175)
Q Consensus 5 ~~kli~~DlDGTLl~~~ 21 (175)
.+|.|+||+||||++.+
T Consensus 2 ~~k~iiFDlDGTLid~~ 18 (224)
T PRK09449 2 KYDWILFDADETLFHFD 18 (224)
T ss_pred CccEEEEcCCCchhcch
Confidence 47999999999999743
No 133
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=95.87 E-value=0.028 Score=41.22 Aligned_cols=54 Identities=20% Similarity=0.214 Sum_probs=39.8
Q ss_pred ceEEEEecCCCccCCCCCC------------------------CHHHHHHHHHhhCCCeEEEEEcCCCHHHHHHHhcCC
Q psy16481 6 NTICLFDVDGTLTQPRQKA------------------------QNETLDFLLKKLKPLSHLAIVSGSDMNKVAEQLGGE 60 (175)
Q Consensus 6 ~kli~~DlDGTLl~~~~~i------------------------~~~~~~~~l~~l~~~i~~~iaTGR~~~~~~~~~~~~ 60 (175)
++.+++|||+||+.+.... =|...+. |+++.+...++|.|..+..-+...+..+
T Consensus 1 k~~lvlDLDeTLi~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~RPgl~eF-L~~l~~~yei~I~Ts~~~~yA~~il~~l 78 (162)
T TIGR02251 1 KKTLVLDLDETLVHSTFKMPKVDADFKVPVLIDGKIIPVYVFKRPHVDEF-LERVSKWYELVIFTASLEEYADPVLDIL 78 (162)
T ss_pred CcEEEEcCCCCcCCCCCCCCCCCCceEEEEEecCcEEEEEEEECCCHHHH-HHHHHhcCEEEEEcCCcHHHHHHHHHHH
Confidence 4689999999999865422 2345677 9999877888888887777666666554
No 134
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=95.84 E-value=0.0036 Score=53.38 Aligned_cols=30 Identities=30% Similarity=0.338 Sum_probs=25.4
Q ss_pred ceEEEEecCCCccCCCCCCCHHHHHHHHHhh
Q psy16481 6 NTICLFDVDGTLTQPRQKAQNETLDFLLKKL 36 (175)
Q Consensus 6 ~kli~~DlDGTLl~~~~~i~~~~~~~~l~~l 36 (175)
+|.|.|||||||+++...+.....++ ++++
T Consensus 241 ~k~vIFDlDGTLiDs~~~~~~a~~~~-~~~~ 270 (459)
T PRK06698 241 LQALIFDMDGTLFQTDKILELSLDDT-FDHL 270 (459)
T ss_pred hhheeEccCCceecchhHHHHHHHHH-HHHH
Confidence 47899999999999988777777777 7776
No 135
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=95.83 E-value=0.024 Score=43.01 Aligned_cols=56 Identities=18% Similarity=0.189 Sum_probs=40.6
Q ss_pred CcceEEEEecCCCccCCCC-------CCCHHHHHHHHHhhCCCeEEEEEcCCCHHHHHHHhcCC
Q psy16481 4 RANTICLFDVDGTLTQPRQ-------KAQNETLDFLLKKLKPLSHLAIVSGSDMNKVAEQLGGE 60 (175)
Q Consensus 4 ~~~kli~~DlDGTLl~~~~-------~i~~~~~~~~l~~l~~~i~~~iaTGR~~~~~~~~~~~~ 60 (175)
.++|++++||||||++... -.=|..-+. |+.+.+...++|=|..+..-+...+..+
T Consensus 19 ~~kklLVLDLDeTLvh~~~~~~~~~~~kRP~l~eF-L~~~~~~feIvVwTAa~~~ya~~~l~~l 81 (195)
T TIGR02245 19 EGKKLLVLDIDYTLFDHRSPAETGEELMRPYLHEF-LTSAYEDYDIVIWSATSMKWIEIKMTEL 81 (195)
T ss_pred CCCcEEEEeCCCceEcccccCCCceEEeCCCHHHH-HHHHHhCCEEEEEecCCHHHHHHHHHHh
Confidence 3678999999999997531 233556666 9999988777887777766666655543
No 136
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.74 E-value=0.025 Score=48.19 Aligned_cols=60 Identities=22% Similarity=0.278 Sum_probs=46.0
Q ss_pred CCCCcceEEEEecCCCccC----CCC----CCC-----H--HHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCC
Q psy16481 1 MTCRANTICLFDVDGTLTQ----PRQ----KAQ-----N--ETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGE 60 (175)
Q Consensus 1 ~~~~~~kli~~DlDGTLl~----~~~----~i~-----~--~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~ 60 (175)
|+.+.+|.+++|||+||.. +++ +++ + .+++-.|+.|.++ +..++||=+....+.+.|...
T Consensus 217 ~~g~~kK~LVLDLDNTLWGGVIGedGv~GI~Ls~~~~G~~fk~fQ~~Ik~l~kqGVlLav~SKN~~~da~evF~kh 292 (574)
T COG3882 217 MSGKSKKALVLDLDNTLWGGVIGEDGVDGIRLSNSAEGEAFKTFQNFIKGLKKQGVLLAVCSKNTEKDAKEVFRKH 292 (574)
T ss_pred hhCcccceEEEecCCcccccccccccccceeecCCCCchhHHHHHHHHHHHHhccEEEEEecCCchhhHHHHHhhC
Confidence 6778899999999999987 221 444 1 2333338889999 999999999999998887653
No 137
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=95.71 E-value=0.0032 Score=47.56 Aligned_cols=27 Identities=33% Similarity=0.420 Sum_probs=18.6
Q ss_pred EEEecCCCccCCCCCCCHHHHHHHHHhh
Q psy16481 9 CLFDVDGTLTQPRQKAQNETLDFLLKKL 36 (175)
Q Consensus 9 i~~DlDGTLl~~~~~i~~~~~~~~l~~l 36 (175)
|+||+||||+++...+.+...++ +++.
T Consensus 1 viFD~DGTL~Ds~~~~~~~~~~~-~~~~ 27 (213)
T TIGR01449 1 VLFDLDGTLVDSAPDIAAAVNMA-LAAL 27 (213)
T ss_pred CeecCCCccccCHHHHHHHHHHH-HHHC
Confidence 58999999999865454444444 5544
No 138
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=95.64 E-value=0.0037 Score=44.85 Aligned_cols=28 Identities=29% Similarity=0.450 Sum_probs=18.9
Q ss_pred EEEEecCCCccCCCCCCCHHHHHHHHHhh
Q psy16481 8 ICLFDVDGTLTQPRQKAQNETLDFLLKKL 36 (175)
Q Consensus 8 li~~DlDGTLl~~~~~i~~~~~~~~l~~l 36 (175)
+|.||+||||+++..-+.....++ +++.
T Consensus 1 ~iifD~DGTL~d~~~~~~~~~~~~-~~~~ 28 (154)
T TIGR01549 1 AILFDIDGTLVDSSFAIRRAFEET-LEEF 28 (154)
T ss_pred CeEecCCCcccccHHHHHHHHHHH-HHHh
Confidence 489999999999865444444444 5544
No 139
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=95.63 E-value=0.0035 Score=47.33 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=19.1
Q ss_pred EEEecCCCccCCCCCCCHHHHHHHHHh
Q psy16481 9 CLFDVDGTLTQPRQKAQNETLDFLLKK 35 (175)
Q Consensus 9 i~~DlDGTLl~~~~~i~~~~~~~~l~~ 35 (175)
|+|||||||+++...+-....++ +++
T Consensus 1 iiFDlDGTL~Ds~~~~~~~~~~~-~~~ 26 (205)
T TIGR01454 1 VVFDLDGVLVDSFAVMREAFAIA-YRE 26 (205)
T ss_pred CeecCcCccccCHHHHHHHHHHH-HHH
Confidence 58999999999876555555555 554
No 140
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=95.50 E-value=0.0056 Score=45.12 Aligned_cols=17 Identities=29% Similarity=0.614 Sum_probs=14.0
Q ss_pred EEEEecCCCccCCCCCC
Q psy16481 8 ICLFDVDGTLTQPRQKA 24 (175)
Q Consensus 8 li~~DlDGTLl~~~~~i 24 (175)
+|+||+||||+++....
T Consensus 1 ~iiFD~DGTL~ds~~~~ 17 (185)
T TIGR01990 1 AVIFDLDGVITDTAEYH 17 (185)
T ss_pred CeEEcCCCccccChHHH
Confidence 48999999999987533
No 141
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=95.36 E-value=0.039 Score=40.32 Aligned_cols=57 Identities=14% Similarity=0.088 Sum_probs=39.3
Q ss_pred CCcceEEEEecCCCccCCCCC--C---------------------------------CHHHHHHHHHhhCCCeEEEEEcC
Q psy16481 3 CRANTICLFDVDGTLTQPRQK--A---------------------------------QNETLDFLLKKLKPLSHLAIVSG 47 (175)
Q Consensus 3 ~~~~kli~~DlDGTLl~~~~~--i---------------------------------~~~~~~~~l~~l~~~i~~~iaTG 47 (175)
..+++.+++|||.||+.+... . -|...+. |+++++.+.++|+|.
T Consensus 3 ~~~kl~LVLDLDeTLihs~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~ef-L~~l~~~yel~I~T~ 81 (156)
T TIGR02250 3 REKKLHLVLDLDQTLIHTTKDPTLSEWEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEF-LKEASKLYEMHVYTM 81 (156)
T ss_pred cCCceEEEEeCCCCcccccccCccchhhhcccccCCccccccceEEEcCCeEEEEEECCCHHHH-HHHHHhhcEEEEEeC
Confidence 356788999999999995431 1 1345566 888875577888877
Q ss_pred CCHHHHHHHhcCC
Q psy16481 48 SDMNKVAEQLGGE 60 (175)
Q Consensus 48 R~~~~~~~~~~~~ 60 (175)
.+..-+...++.+
T Consensus 82 ~~~~yA~~vl~~l 94 (156)
T TIGR02250 82 GTRAYAQAIAKLI 94 (156)
T ss_pred CcHHHHHHHHHHh
Confidence 7776665555543
No 142
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=95.34 E-value=0.0054 Score=44.96 Aligned_cols=15 Identities=40% Similarity=0.538 Sum_probs=13.0
Q ss_pred EEEEecCCCccCCCC
Q psy16481 8 ICLFDVDGTLTQPRQ 22 (175)
Q Consensus 8 li~~DlDGTLl~~~~ 22 (175)
+|+||+||||+++..
T Consensus 1 ~viFD~DGTL~D~~~ 15 (175)
T TIGR01493 1 AMVFDVYGTLVDVHG 15 (175)
T ss_pred CeEEecCCcCcccHH
Confidence 479999999999874
No 143
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=95.16 E-value=0.019 Score=46.85 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=18.9
Q ss_pred CcceEEEEecCCCccCCCCCCCHHHHHHHHHhh
Q psy16481 4 RANTICLFDVDGTLTQPRQKAQNETLDFLLKKL 36 (175)
Q Consensus 4 ~~~kli~~DlDGTLl~~~~~i~~~~~~~~l~~l 36 (175)
++.|+|+|||||||+ ..+..+. +.+.
T Consensus 108 ~~~~LvvfDmDGTLI------~~e~i~e-ia~~ 133 (322)
T PRK11133 108 RTPGLLVMDMDSTAI------QIECIDE-IAKL 133 (322)
T ss_pred cCCCEEEEECCCCCc------chHHHHH-HHHH
Confidence 468999999999997 4455555 4443
No 144
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=95.16 E-value=0.012 Score=45.09 Aligned_cols=18 Identities=50% Similarity=0.743 Sum_probs=15.8
Q ss_pred cceEEEEecCCCccCCCC
Q psy16481 5 ANTICLFDVDGTLTQPRQ 22 (175)
Q Consensus 5 ~~kli~~DlDGTLl~~~~ 22 (175)
.+|+.+||+||||++.+.
T Consensus 4 ~~~la~FDfDgTLt~~ds 21 (210)
T TIGR01545 4 AKRIIFFDLDGTLHQQDM 21 (210)
T ss_pred cCcEEEEcCCCCCccCcc
Confidence 578999999999999764
No 145
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=94.94 E-value=0.0099 Score=44.62 Aligned_cols=30 Identities=30% Similarity=0.349 Sum_probs=22.3
Q ss_pred ceEEEEecCCCccCCCCCC----CHHHHHHHHHhh
Q psy16481 6 NTICLFDVDGTLTQPRQKA----QNETLDFLLKKL 36 (175)
Q Consensus 6 ~kli~~DlDGTLl~~~~~i----~~~~~~~~l~~l 36 (175)
++.|+||.||||+..+..+ .....+. +.++
T Consensus 1 i~~i~fDktGTLt~~~~~v~~~~~~~~~~~-~~~~ 34 (215)
T PF00702_consen 1 IDAICFDKTGTLTQGKMSVAPPSNEAALAI-AAAL 34 (215)
T ss_dssp ESEEEEECCTTTBESHHEEESCSHHHHHHH-HHHH
T ss_pred CeEEEEecCCCcccCeEEEEeccHHHHHHH-HHHh
Confidence 4789999999999988877 4444444 5544
No 146
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=94.93 E-value=0.015 Score=43.98 Aligned_cols=16 Identities=25% Similarity=0.414 Sum_probs=14.4
Q ss_pred ceEEEEecCCCccCCC
Q psy16481 6 NTICLFDVDGTLTQPR 21 (175)
Q Consensus 6 ~kli~~DlDGTLl~~~ 21 (175)
+|.|+|||||||+++.
T Consensus 2 ik~viFDldGtL~d~~ 17 (211)
T TIGR02247 2 IKAVIFDFGGVLLPSP 17 (211)
T ss_pred ceEEEEecCCceecCH
Confidence 6899999999999974
No 147
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=94.48 E-value=0.017 Score=54.18 Aligned_cols=33 Identities=21% Similarity=0.471 Sum_probs=23.4
Q ss_pred CCcceEEEEecCCCccCCCCCCCHHHHHHHHHhh
Q psy16481 3 CRANTICLFDVDGTLTQPRQKAQNETLDFLLKKL 36 (175)
Q Consensus 3 ~~~~kli~~DlDGTLl~~~~~i~~~~~~~~l~~l 36 (175)
+.++|+|+|||||||+++.....+...++ +++.
T Consensus 72 ~~~ikaVIFDlDGTLiDS~~~~~~a~~~~-~~~~ 104 (1057)
T PLN02919 72 WGKVSAVLFDMDGVLCNSEEPSRRAAVDV-FAEM 104 (1057)
T ss_pred CCCCCEEEECCCCCeEeChHHHHHHHHHH-HHHc
Confidence 45789999999999999865444444444 5543
No 148
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=94.39 E-value=0.04 Score=41.92 Aligned_cols=21 Identities=33% Similarity=0.362 Sum_probs=17.5
Q ss_pred CCcceEEEEecCCCccCCCCC
Q psy16481 3 CRANTICLFDVDGTLTQPRQK 23 (175)
Q Consensus 3 ~~~~kli~~DlDGTLl~~~~~ 23 (175)
+..+|.|+||+||||++....
T Consensus 1 ~~~~k~i~FD~d~TL~d~~~~ 21 (229)
T COG1011 1 MMMIKAILFDLDGTLLDFDSA 21 (229)
T ss_pred CCceeEEEEecCCcccccchH
Confidence 356899999999999997653
No 149
>KOG1615|consensus
Probab=94.24 E-value=0.051 Score=41.12 Aligned_cols=40 Identities=8% Similarity=0.096 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcc
Q psy16481 23 KAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVL 63 (175)
Q Consensus 23 ~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~ 63 (175)
++++..++. ..+|+++ .+++++||.-.+.+.+..+.+|++
T Consensus 88 ~lT~Gi~eL-v~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~ 128 (227)
T KOG1615|consen 88 TLTPGIREL-VSRLHARGTQVYLISGGFRQLIEPVAEQLGIP 128 (227)
T ss_pred ccCCCHHHH-HHHHHHcCCeEEEEcCChHHHHHHHHHHhCCc
Confidence 456667777 8899999 999999999888777777777653
No 150
>COG4087 Soluble P-type ATPase [General function prediction only]
Probab=94.07 E-value=0.047 Score=38.74 Aligned_cols=53 Identities=15% Similarity=0.064 Sum_probs=44.2
Q ss_pred EEEEecCCCccCCCCCCCHHHHHHHHHhhCCCeEEEEEcCCCHHHHHHHhcCCCc
Q psy16481 8 ICLFDVDGTLTQPRQKAQNETLDFLLKKLKPLSHLAIVSGSDMNKVAEQLGGEKV 62 (175)
Q Consensus 8 li~~DlDGTLl~~~~~i~~~~~~~~l~~l~~~i~~~iaTGR~~~~~~~~~~~~~~ 62 (175)
.-+-++++|+.... ++-+++.+. |++|.+.++++||||-.+.++.++++..|+
T Consensus 16 ~~~~~v~~tiatgG-klf~ev~e~-iqeL~d~V~i~IASgDr~gsl~~lae~~gi 68 (152)
T COG4087 16 SKAGKVLYTIATGG-KLFSEVSET-IQELHDMVDIYIASGDRKGSLVQLAEFVGI 68 (152)
T ss_pred eecceEEEEEccCc-EEcHhhHHH-HHHHHHhheEEEecCCcchHHHHHHHHcCC
Confidence 34678899997765 466788999 999999999999999999999888777654
No 151
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=93.84 E-value=0.17 Score=38.05 Aligned_cols=36 Identities=14% Similarity=0.080 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCC
Q psy16481 24 AQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGE 60 (175)
Q Consensus 24 i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~ 60 (175)
|+|..++. ++..+++ +.|+++||.+-.-+.++++..
T Consensus 74 Idp~fKef-~e~ike~di~fiVvSsGm~~fI~~lfe~i 110 (220)
T COG4359 74 IDPGFKEF-VEWIKEHDIPFIVVSSGMDPFIYPLFEGI 110 (220)
T ss_pred cCccHHHH-HHHHHHcCCCEEEEeCCCchHHHHHHHhh
Confidence 55556666 7788889 999999999999888888764
No 152
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=93.78 E-value=0.03 Score=42.65 Aligned_cols=36 Identities=11% Similarity=0.109 Sum_probs=26.5
Q ss_pred HHHHHHHHHhhCCCeEEEEEcCCCHHHHHHHhcCCCc
Q psy16481 26 NETLDFLLKKLKPLSHLAIVSGSDMNKVAEQLGGEKV 62 (175)
Q Consensus 26 ~~~~~~~l~~l~~~i~~~iaTGR~~~~~~~~~~~~~~ 62 (175)
|...+. |+.++++.+++|+||.....+.+.++.+|+
T Consensus 71 pga~el-l~~lk~~~~~~IVS~~~~~~~~~il~~lgi 106 (203)
T TIGR02137 71 EGAVEF-VDWLRERFQVVILSDTFYEFSQPLMRQLGF 106 (203)
T ss_pred ccHHHH-HHHHHhCCeEEEEeCChHHHHHHHHHHcCC
Confidence 334445 666666678999999988888888877765
No 153
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=93.58 E-value=0.032 Score=41.78 Aligned_cols=14 Identities=50% Similarity=0.864 Sum_probs=12.1
Q ss_pred EEEEecCCCccCCC
Q psy16481 8 ICLFDVDGTLTQPR 21 (175)
Q Consensus 8 li~~DlDGTLl~~~ 21 (175)
+++||+||||++.+
T Consensus 1 ~a~FD~DgTL~~~~ 14 (202)
T TIGR01490 1 LAFFDFDGTLTAKD 14 (202)
T ss_pred CeEEccCCCCCCCc
Confidence 47999999999965
No 154
>PF06437 ISN1: IMP-specific 5'-nucleotidase; InterPro: IPR009453 The Saccharomyces cerevisiae ISN1 (YOR155c) gene encodes an IMP-specific 5'-nucleotidase, which catalyses degradation of IMP to inosine as part of the purine salvage pathway.; GO: 0000287 magnesium ion binding, 0016791 phosphatase activity, 0009117 nucleotide metabolic process
Probab=93.25 E-value=0.19 Score=41.76 Aligned_cols=48 Identities=21% Similarity=0.236 Sum_probs=37.7
Q ss_pred cceEEEEecCCCccCCCCCC--CHHHHHHHHHhhCCCeEEEEEcCCCHHH
Q psy16481 5 ANTICLFDVDGTLTQPRQKA--QNETLDFLLKKLKPLSHLAIVSGSDMNK 52 (175)
Q Consensus 5 ~~kli~~DlDGTLl~~~~~i--~~~~~~~~l~~l~~~i~~~iaTGR~~~~ 52 (175)
+-|||-||=|+||..+.+.+ +......+|+.|+..+.|.|+|.=.|..
T Consensus 146 ~L~LvTFDgDvTLY~DG~sl~~d~pvi~~ii~LL~~gv~VgIVTAAGY~~ 195 (408)
T PF06437_consen 146 GLKLVTFDGDVTLYEDGASLEPDNPVIPRIIKLLRRGVKVGIVTAAGYPG 195 (408)
T ss_pred CceEEEEcCCcccccCCCCCCCCchHHHHHHHHHhcCCeEEEEeCCCCCC
Confidence 67999999999999999877 6667777455555558888888766654
No 155
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=93.10 E-value=0.041 Score=40.58 Aligned_cols=30 Identities=23% Similarity=0.238 Sum_probs=19.9
Q ss_pred HHhhCCC-eEEEEEcCCCHHHHHHHhcCCCc
Q psy16481 33 LKKLKPL-SHLAIVSGSDMNKVAEQLGGEKV 62 (175)
Q Consensus 33 l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~ 62 (175)
|+.++++ +.++|+||.+...+...+..+++
T Consensus 98 i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i 128 (192)
T PF12710_consen 98 IRELKDNGIKVVIVSGSPDEIIEPIAERLGI 128 (192)
T ss_dssp HHHHHHTTSEEEEEEEEEHHHHHHHHHHTTS
T ss_pred HHHHHHCCCEEEEECCCcHHHHHHHHHHcCC
Confidence 5555566 88888888877666666655443
No 156
>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]
Probab=93.08 E-value=0.12 Score=43.66 Aligned_cols=48 Identities=15% Similarity=0.290 Sum_probs=32.5
Q ss_pred cceEEEEecCCCccCCCCC--C---------CHHHHHHHHHhhCCC-eEEEEEcCCCHHHH
Q psy16481 5 ANTICLFDVDGTLTQPRQK--A---------QNETLDFLLKKLKPL-SHLAIVSGSDMNKV 53 (175)
Q Consensus 5 ~~kli~~DlDGTLl~~~~~--i---------~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~ 53 (175)
..|.|++|||||++.++-- + +...... .-....+ +.+.--|.|++-.+
T Consensus 374 n~kiVVsDiDGTITkSD~~Ghv~~miGkdwth~gVAkL-YtdI~rNGYkI~YltsR~~Gqa 433 (580)
T COG5083 374 NKKIVVSDIDGTITKSDALGHVKQMIGKDWTHNGVAKL-YTDIDRNGYKIKYLTSRSYGQA 433 (580)
T ss_pred CCcEEEEecCCcEEehhhHHHHHHHhccchhhcchhhh-hhhhccCceEEEEEecccccch
Confidence 5789999999999987631 1 1112222 3444446 78888999998765
No 157
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=92.50 E-value=0.043 Score=40.08 Aligned_cols=15 Identities=40% Similarity=0.709 Sum_probs=12.6
Q ss_pred EEEEecCCCccCCCC
Q psy16481 8 ICLFDVDGTLTQPRQ 22 (175)
Q Consensus 8 li~~DlDGTLl~~~~ 22 (175)
.|+|||||||++.+.
T Consensus 1 ~vlFDlDgtLv~~~~ 15 (183)
T TIGR01509 1 AILFDLDGVLVDTSS 15 (183)
T ss_pred CeeeccCCceechHH
Confidence 379999999999754
No 158
>KOG3109|consensus
Probab=92.01 E-value=0.19 Score=38.72 Aligned_cols=27 Identities=22% Similarity=0.143 Sum_probs=23.8
Q ss_pred cceEEEEecCCCccCCCCCCCHHHHHH
Q psy16481 5 ANTICLFDVDGTLTQPRQKAQNETLDF 31 (175)
Q Consensus 5 ~~kli~~DlDGTLl~~~~~i~~~~~~~ 31 (175)
.++.++||+|.||.+....|....++.
T Consensus 14 ~~~~l~FDiDdtLYp~St~i~~~~~~n 40 (244)
T KOG3109|consen 14 NYKCLFFDIDDTLYPLSTGIQLMMRNN 40 (244)
T ss_pred cceEEEEecccccccCchhHHHHHHHH
Confidence 589999999999999888888887766
No 159
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=91.88 E-value=0.095 Score=39.34 Aligned_cols=15 Identities=13% Similarity=0.430 Sum_probs=13.1
Q ss_pred eEEEEecCCCccCCC
Q psy16481 7 TICLFDVDGTLTQPR 21 (175)
Q Consensus 7 kli~~DlDGTLl~~~ 21 (175)
.+|+|||||||++.+
T Consensus 1 ~~viFDldgvL~d~~ 15 (199)
T PRK09456 1 MLYIFDLGNVIVDID 15 (199)
T ss_pred CEEEEeCCCccccCc
Confidence 379999999999864
No 160
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=91.72 E-value=0.077 Score=37.99 Aligned_cols=14 Identities=43% Similarity=0.797 Sum_probs=11.5
Q ss_pred EEEecCCCccCCCC
Q psy16481 9 CLFDVDGTLTQPRQ 22 (175)
Q Consensus 9 i~~DlDGTLl~~~~ 22 (175)
|+||+||||++...
T Consensus 1 iifD~dgtL~d~~~ 14 (176)
T PF13419_consen 1 IIFDLDGTLVDTDP 14 (176)
T ss_dssp EEEESBTTTEEHHH
T ss_pred cEEECCCCcEeCHH
Confidence 68999999998654
No 161
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=91.64 E-value=0.13 Score=44.48 Aligned_cols=21 Identities=33% Similarity=0.387 Sum_probs=17.1
Q ss_pred cceEEEEecCCCccCCCCCCC
Q psy16481 5 ANTICLFDVDGTLTQPRQKAQ 25 (175)
Q Consensus 5 ~~kli~~DlDGTLl~~~~~i~ 25 (175)
..+.++||+||||+.++...+
T Consensus 21 ~~~~~~FDfDGTLt~~~s~f~ 41 (497)
T PLN02177 21 SNQTVAADLDGTLLISRSAFP 41 (497)
T ss_pred cccEEEEecCCcccCCCCccH
Confidence 357899999999999776555
No 162
>KOG2116|consensus
Probab=91.32 E-value=0.2 Score=44.20 Aligned_cols=47 Identities=19% Similarity=0.357 Sum_probs=37.1
Q ss_pred ceEEEEecCCCccCCCC--CC---------CHHHHHHHHHhhCCC-eEEEEEcCCCHHHH
Q psy16481 6 NTICLFDVDGTLTQPRQ--KA---------QNETLDFLLKKLKPL-SHLAIVSGSDMNKV 53 (175)
Q Consensus 6 ~kli~~DlDGTLl~~~~--~i---------~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~ 53 (175)
-|+|++|+|||++.++- ++ .....+. ..+..++ ++++.+|.|..-.+
T Consensus 530 ~kIVISDIDGTITKSDvLGh~lp~iGkDWTh~GVAkL-yt~Ik~NGYk~lyLSARaIgQA 588 (738)
T KOG2116|consen 530 DKIVISDIDGTITKSDVLGHVLPMIGKDWTHTGVAKL-YTKIKENGYKILYLSARAIGQA 588 (738)
T ss_pred CcEEEecCCCceEhhhhhhhhhhhhcCcchhhhHHHH-HHHHHhCCeeEEEEehhhhhhh
Confidence 48999999999999872 33 2234455 8888999 99999999998764
No 163
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=91.09 E-value=0.13 Score=38.56 Aligned_cols=15 Identities=33% Similarity=0.532 Sum_probs=11.0
Q ss_pred ceE-EEEecCCCccCC
Q psy16481 6 NTI-CLFDVDGTLTQP 20 (175)
Q Consensus 6 ~kl-i~~DlDGTLl~~ 20 (175)
+|+ |++||||||.+.
T Consensus 1 ~~i~I~iDiDgVLad~ 16 (191)
T PF06941_consen 1 RKIRIAIDIDGVLADF 16 (191)
T ss_dssp --EEEEEESBTTTB-H
T ss_pred CCcEEEEECCCCCccc
Confidence 478 999999999884
No 164
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=90.97 E-value=0.24 Score=42.65 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=21.3
Q ss_pred cceEEEEecCCCccCCCCCCCHHHH
Q psy16481 5 ANTICLFDVDGTLTQPRQKAQNETL 29 (175)
Q Consensus 5 ~~kli~~DlDGTLl~~~~~i~~~~~ 29 (175)
..+.+++|+|||||.+...++.-.+
T Consensus 7 ~~~~~~fD~DGTLlrs~ssFpyFml 31 (498)
T PLN02499 7 TSYSVVSELEGTLLKDADPFSYFML 31 (498)
T ss_pred ccceEEEecccceecCCCccHHHHH
Confidence 5578999999999998778887777
No 165
>KOG1618|consensus
Probab=89.66 E-value=0.5 Score=38.53 Aligned_cols=46 Identities=20% Similarity=0.298 Sum_probs=34.1
Q ss_pred cceEEEEecCCCccCCCCCCCHHHHHHHHHhhCCC-----eEEEEEc--CCCHHH
Q psy16481 5 ANTICLFDVDGTLTQPRQKAQNETLDFLLKKLKPL-----SHLAIVS--GSDMNK 52 (175)
Q Consensus 5 ~~kli~~DlDGTLl~~~~~i~~~~~~~~l~~l~~~-----i~~~iaT--GR~~~~ 52 (175)
+.=-+|||+||.|+...+.|. ...+| ++.|.++ |.|++.| |...++
T Consensus 34 ~~fgfafDIDGVL~RG~~~i~-~~~~A-lr~L~~~~g~lkIP~vfLTNGGg~~E~ 86 (389)
T KOG1618|consen 34 PTFGFAFDIDGVLFRGHRPIP-GALKA-LRRLVDNQGQLKIPFVFLTNGGGILES 86 (389)
T ss_pred CceeEEEecccEEEecCCCCc-chHHH-HHHHHhcCCCeeccEEEEeCCCCcchh
Confidence 445699999999999877665 55688 8888774 7778777 444443
No 166
>KOG2134|consensus
Probab=89.36 E-value=0.35 Score=40.28 Aligned_cols=41 Identities=32% Similarity=0.340 Sum_probs=30.3
Q ss_pred cceEEEEecCCCccCCCC------------CCCHHHHHHHHHhhCCC-eEEEEEc
Q psy16481 5 ANTICLFDVDGTLTQPRQ------------KAQNETLDFLLKKLKPL-SHLAIVS 46 (175)
Q Consensus 5 ~~kli~~DlDGTLl~~~~------------~i~~~~~~~~l~~l~~~-i~~~iaT 46 (175)
.-|.++|||||||++.+. -+-++.-.- |+.+.+. +.++|.|
T Consensus 74 ~~K~i~FD~dgtlI~t~sg~vf~~~~~dw~~l~~~vp~K-lktl~~~g~~l~ift 127 (422)
T KOG2134|consen 74 GSKIIMFDYDGTLIDTKSGKVFPKGSMDWRILFPEVPSK-LKTLYQDGIKLFIFT 127 (422)
T ss_pred CcceEEEecCCceeecCCcceeeccCccceeeccccchh-hhhhccCCeEEEEEe
Confidence 458999999999998432 334445566 8888888 8888876
No 167
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=89.13 E-value=0.19 Score=38.23 Aligned_cols=28 Identities=18% Similarity=0.067 Sum_probs=20.4
Q ss_pred HHhhCCC-eEEEEEcCCCHHHHHHHhcCC
Q psy16481 33 LKKLKPL-SHLAIVSGSDMNKVAEQLGGE 60 (175)
Q Consensus 33 l~~l~~~-i~~~iaTGR~~~~~~~~~~~~ 60 (175)
|+.++++ +.++|+||.....+...++.+
T Consensus 79 l~~l~~~g~~~~IvS~~~~~~i~~il~~~ 107 (214)
T TIGR03333 79 VAFINEHGIPFYVISGGMDFFVYPLLEGI 107 (214)
T ss_pred HHHHHHCCCeEEEECCCcHHHHHHHHHhh
Confidence 5666666 888899988877776666553
No 168
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=88.36 E-value=0.64 Score=34.87 Aligned_cols=48 Identities=21% Similarity=0.231 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEEe
Q psy16481 23 KAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFP 71 (175)
Q Consensus 23 ~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~ 71 (175)
.+-+...+. |++|+++ ++++++||++...+...++..++...++.+++
T Consensus 75 ~~~~g~~~~-L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~~~f~~i~~ 123 (205)
T TIGR01454 75 EVFPGVPEL-LAELRADGVGTAIATGKSGPRARSLLEALGLLPLFDHVIG 123 (205)
T ss_pred ccCCCHHHH-HHHHHHCCCeEEEEeCCchHHHHHHHHHcCChhheeeEEe
Confidence 567788898 9999998 99999999998888777777665433444443
No 169
>KOG3120|consensus
Probab=87.91 E-value=0.93 Score=35.14 Aligned_cols=37 Identities=22% Similarity=0.219 Sum_probs=24.9
Q ss_pred CHHHHHHHHHhhCCC--eEEEEEcCCCHHHHHHHhcCCCc
Q psy16481 25 QNETLDFLLKKLKPL--SHLAIVSGSDMNKVAEQLGGEKV 62 (175)
Q Consensus 25 ~~~~~~~~l~~l~~~--i~~~iaTGR~~~~~~~~~~~~~~ 62 (175)
+|...++ |+.+.+. ..+.|+|--.-..+.+.++..++
T Consensus 86 ~Pgmv~l-ik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~ 124 (256)
T KOG3120|consen 86 VPGMVRL-IKSAAKLGCFELIIVSDANSFFIEEILEAAGI 124 (256)
T ss_pred CccHHHH-HHHHHhCCCceEEEEecCchhHHHHHHHHccH
Confidence 3445566 7776666 57888887777777777766654
No 170
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=87.35 E-value=0.88 Score=34.10 Aligned_cols=48 Identities=13% Similarity=0.045 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEEe
Q psy16481 23 KAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFP 71 (175)
Q Consensus 23 ~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~ 71 (175)
++-+...+. |+.|+++ ++++++|+.+...+...++..++...++.+++
T Consensus 85 ~~~~g~~~~-L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~ 133 (213)
T TIGR01449 85 SVFPGVEAT-LGALRAKGLRLGLVTNKPTPLARPLLELLGLAKYFSVLIG 133 (213)
T ss_pred ccCCCHHHH-HHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcHhhCcEEEe
Confidence 566788888 9999998 99999999998888888877665444444443
No 171
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=87.33 E-value=1 Score=39.64 Aligned_cols=57 Identities=16% Similarity=0.235 Sum_probs=48.1
Q ss_pred cceEEEEecCCCccCC---CCCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCc
Q psy16481 5 ANTICLFDVDGTLTQP---RQKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKV 62 (175)
Q Consensus 5 ~~kli~~DlDGTLl~~---~~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~ 62 (175)
....+.++.||+++.- ..++-+...++ |++|+++ ++++++||.....+....+.+|+
T Consensus 384 g~~~~~~~~~~~~~g~~~~~d~l~~~a~e~-i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi 444 (562)
T TIGR01511 384 GSTSVLVAVNGELAGVFALEDQLRPEAKEV-IQALKRRGIEPVMLTGDNRKTAKAVAKELGI 444 (562)
T ss_pred CCEEEEEEECCEEEEEEEecccccHHHHHH-HHHHHHcCCeEEEEcCCCHHHHHHHHHHcCC
Confidence 4577889999998662 45788999999 9999999 99999999999988888877653
No 172
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=86.43 E-value=1 Score=34.01 Aligned_cols=48 Identities=25% Similarity=0.196 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEEe
Q psy16481 23 KAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFP 71 (175)
Q Consensus 23 ~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~ 71 (175)
++-+...+. |++|+++ ++++++|+.....+...++.+++...++.+++
T Consensus 94 ~~~~g~~~~-L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~~~f~~i~~ 142 (221)
T TIGR02253 94 RVYPGVRDT-LMELRESGYRLGIITDGLPVKQWEKLERLGVRDFFDAVIT 142 (221)
T ss_pred CCCCCHHHH-HHHHHHCCCEEEEEeCCchHHHHHHHHhCChHHhccEEEE
Confidence 466788888 9999998 99999999988777777777665444444443
No 173
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=86.37 E-value=1.2 Score=34.76 Aligned_cols=48 Identities=15% Similarity=0.050 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEEe
Q psy16481 23 KAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFP 71 (175)
Q Consensus 23 ~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~ 71 (175)
.+-|...+. |+.|+++ ++++|+|+.+...+...++.+++...++.+++
T Consensus 108 ~l~pgv~e~-L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~~Fd~iv~ 156 (248)
T PLN02770 108 KPLNGLYKL-KKWIEDRGLKRAAVTNAPRENAELMISLLGLSDFFQAVII 156 (248)
T ss_pred CcCccHHHH-HHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChhhCcEEEe
Confidence 455678888 9999998 99999999999988888877766544555554
No 174
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=86.26 E-value=1.1 Score=33.44 Aligned_cols=42 Identities=19% Similarity=0.203 Sum_probs=32.1
Q ss_pred HHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEEe
Q psy16481 29 LDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFP 71 (175)
Q Consensus 29 ~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~ 71 (175)
.+. |+.|+++ ++++|+||++...+...++..|+...++.+++
T Consensus 112 ~~~-L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~f~~~~~ 154 (197)
T TIGR01548 112 KGL-LRELHRAPKGMAVVTGRPRKDAAKFLTTHGLEILFPVQIW 154 (197)
T ss_pred HHH-HHHHHHcCCcEEEECCCCHHHHHHHHHHcCchhhCCEEEe
Confidence 677 8889888 99999999999988888877765443443433
No 175
>KOG3040|consensus
Probab=85.44 E-value=1.4 Score=33.94 Aligned_cols=57 Identities=23% Similarity=0.280 Sum_probs=39.8
Q ss_pred CCcceEEEEecCCCccCCCCCCCHHHHHHHHHhhCCC-eEEEEEc---CCCHHHHHHHhcCCC
Q psy16481 3 CRANTICLFDVDGTLTQPRQKAQNETLDFLLKKLKPL-SHLAIVS---GSDMNKVAEQLGGEK 61 (175)
Q Consensus 3 ~~~~kli~~DlDGTLl~~~~~i~~~~~~~~l~~l~~~-i~~~iaT---GR~~~~~~~~~~~~~ 61 (175)
+..+|-+.+|+-|||-.++-.++ ...+| +++|+.+ .++=++| +.+...+...+..+|
T Consensus 4 ~~~v~gvLlDlSGtLh~e~~avp-ga~eA-l~rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlg 64 (262)
T KOG3040|consen 4 GRAVKGVLLDLSGTLHIEDAAVP-GAVEA-LKRLRDQHVKVKFVTNTTKESKRNLHERLQRLG 64 (262)
T ss_pred ccccceEEEeccceEecccccCC-CHHHH-HHHHHhcCceEEEEecCcchhHHHHHHHHHHhC
Confidence 46789999999999999887664 66899 9999966 5555554 444444444444433
No 176
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=85.21 E-value=0.74 Score=32.75 Aligned_cols=48 Identities=21% Similarity=0.277 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEEe
Q psy16481 23 KAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFP 71 (175)
Q Consensus 23 ~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~ 71 (175)
++.+...+. |++|+++ ++++++|+.+...+...+..+++...++.+++
T Consensus 77 ~~~~~~~~~-L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~~~f~~i~~ 125 (176)
T PF13419_consen 77 QPYPGVREL-LERLKAKGIPLVIVSNGSRERIERVLERLGLDDYFDEIIS 125 (176)
T ss_dssp EESTTHHHH-HHHHHHTTSEEEEEESSEHHHHHHHHHHTTHGGGCSEEEE
T ss_pred chhhhhhhh-hhhcccccceeEEeecCCcccccccccccccccccccccc
Confidence 566788888 9999978 99999999999888888877665433444443
No 177
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=85.13 E-value=1.1 Score=33.88 Aligned_cols=48 Identities=17% Similarity=0.151 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcc--cccceEEe
Q psy16481 23 KAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVL--EQFDFVFP 71 (175)
Q Consensus 23 ~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~--~~~~~~i~ 71 (175)
++-+...+. |+.|+++ +.++|+||.....+...++.+++. ..++.+++
T Consensus 87 ~l~~G~~~~-L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~~i~~ 137 (220)
T TIGR03351 87 VALPGAEEA-FRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVDAVVC 137 (220)
T ss_pred ccCCCHHHH-HHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCCEEEc
Confidence 577788888 9999998 999999999999887777766543 33444544
No 178
>KOG2914|consensus
Probab=84.61 E-value=0.49 Score=36.65 Aligned_cols=52 Identities=21% Similarity=0.319 Sum_probs=36.1
Q ss_pred cceEEEEecCCCccCCCCCCCHHHHHHHHHhhCCC---eEEEEEcCCCHHHHHHHh
Q psy16481 5 ANTICLFDVDGTLTQPRQKAQNETLDFLLKKLKPL---SHLAIVSGSDMNKVAEQL 57 (175)
Q Consensus 5 ~~kli~~DlDGTLl~~~~~i~~~~~~~~l~~l~~~---i~~~iaTGR~~~~~~~~~ 57 (175)
..-.+.||+||||++++.-..+.+.+. +++..+. ......=|+....+...+
T Consensus 9 ~~~~~lfD~dG~lvdte~~y~~~~~~~-~~~ygk~~~~~~~~~~mG~~~~eaa~~~ 63 (222)
T KOG2914|consen 9 KVSACLFDMDGTLVDTEDLYTEAWQEL-LDRYGKPYPWDVKVKSMGKRTSEAARLF 63 (222)
T ss_pred ceeeEEEecCCcEEecHHHHHHHHHHH-HHHcCCCChHHHHHHHcCCCHHHHHHHH
Confidence 457899999999999887777777776 8888864 223334466666554443
No 179
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=84.37 E-value=5.1 Score=29.71 Aligned_cols=39 Identities=18% Similarity=0.011 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCc
Q psy16481 23 KAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKV 62 (175)
Q Consensus 23 ~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~ 62 (175)
.+-+...+. |+.++++ ++++++||.+...+...++.+++
T Consensus 87 ~~~~~~~~~-l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~ 126 (202)
T TIGR01490 87 ILYPEARDL-IRWHKAEGHTIVLVSASLTILVKPLARILGI 126 (202)
T ss_pred hccHHHHHH-HHHHHHCCCEEEEEeCCcHHHHHHHHHHcCC
Confidence 467788888 9999988 99999999998878777776654
No 180
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=84.20 E-value=1.4 Score=33.59 Aligned_cols=47 Identities=19% Similarity=0.213 Sum_probs=37.7
Q ss_pred CCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEEe
Q psy16481 24 AQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFP 71 (175)
Q Consensus 24 i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~ 71 (175)
.=+...++ |.+|+++ ++.+|+|+++...+...++.+|+...++.+++
T Consensus 90 ~~~gv~e~-L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~~F~~i~g 137 (220)
T COG0546 90 LFPGVKEL-LAALKSAGYKLGIVTNKPERELDILLKALGLADYFDVIVG 137 (220)
T ss_pred cCCCHHHH-HHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCccccceEEc
Confidence 44567888 9999999 99999999999999988887776554544444
No 181
>PRK11590 hypothetical protein; Provisional
Probab=84.08 E-value=4.7 Score=30.52 Aligned_cols=74 Identities=12% Similarity=0.090 Sum_probs=48.1
Q ss_pred CHHHHHHHH-HhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEEecCCceeeeCCeEeeccchhhhhCHHHHHHHH
Q psy16481 25 QNETLDFLL-KKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLVAYKNGKLFEKKSIIDHMGEDKIQTFI 102 (175)
Q Consensus 25 ~~~~~~~~l-~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~~NGa~i~~~~~~i~~~~l~~~l~~~~~~~i~ 102 (175)
-|...+. | +.++++ +.++||||.+...+.+.+..+++. ..+.+||.. -.+..+|+..-.... .++.+.++-
T Consensus 97 ~pga~e~-L~~~l~~~G~~l~IvSas~~~~~~~il~~l~~~-~~~~~i~t~-l~~~~tg~~~g~~c~----g~~K~~~l~ 169 (211)
T PRK11590 97 FPVVQER-LTTYLLSSDADVWLITGSPQPLVEQVYFDTPWL-PRVNLIASQ-MQRRYGGWVLTLRCL----GHEKVAQLE 169 (211)
T ss_pred CccHHHH-HHHHHHhCCCEEEEEeCCcHHHHHHHHHHcccc-ccCceEEEE-EEEEEccEECCccCC----ChHHHHHHH
Confidence 4677888 8 567777 999999999988887777665421 123566533 222335665444444 677788876
Q ss_pred HHH
Q psy16481 103 NYC 105 (175)
Q Consensus 103 ~~~ 105 (175)
+++
T Consensus 170 ~~~ 172 (211)
T PRK11590 170 RKI 172 (211)
T ss_pred HHh
Confidence 665
No 182
>PF09047 MEF2_binding: MEF2 binding; InterPro: IPR015134 The myocyte enhancer factor-2 (MEF2) binding domain, predominantly found in the calcineurin-binding protein CABIN 1, adopts an amphipathic alpha-helical structure, which allows it to bind a hydrophobic groove on the MEF2S domain, forming a triple-helical interaction. Interaction of this domain with MEF2 causes repression of transcription []. ; PDB: 1N6J_G.
Probab=83.54 E-value=1 Score=23.54 Aligned_cols=19 Identities=37% Similarity=0.422 Sum_probs=9.6
Q ss_pred CccCCCCCCCHHHHHHHHHh
Q psy16481 16 TLTQPRQKAQNETLDFLLKK 35 (175)
Q Consensus 16 TLl~~~~~i~~~~~~~~l~~ 35 (175)
|||.+++.||+++++. |+.
T Consensus 1 tllspkgsiseetkqk-lk~ 19 (35)
T PF09047_consen 1 TLLSPKGSISEETKQK-LKS 19 (35)
T ss_dssp -----SS---HHHHHH-HHH
T ss_pred CccCCCCcccHHHHHH-HHH
Confidence 7899999999999998 775
No 183
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=83.53 E-value=1.5 Score=31.36 Aligned_cols=46 Identities=13% Similarity=0.317 Sum_probs=32.8
Q ss_pred eEEEEecCCCccC--CCCCCCHHHHHHHHHhhCCC-eEEEEEcCC--CHHHHHH
Q psy16481 7 TICLFDVDGTLTQ--PRQKAQNETLDFLLKKLKPL-SHLAIVSGS--DMNKVAE 55 (175)
Q Consensus 7 kli~~DlDGTLl~--~~~~i~~~~~~~~l~~l~~~-i~~~iaTGR--~~~~~~~ 55 (175)
-+-++||||.++. +.+.++.. +. ++.+.+. ..+++||=- ++..+.+
T Consensus 44 giAildL~G~~l~l~S~R~~~~~--ev-i~~I~~~G~PviVAtDV~p~P~~V~K 94 (138)
T PF04312_consen 44 GIAILDLDGELLDLKSSRNMSRS--EV-IEWISEYGKPVIVATDVSPPPETVKK 94 (138)
T ss_pred EEEEEecCCcEEEEEeecCCCHH--HH-HHHHHHcCCEEEEEecCCCCcHHHHH
Confidence 4568999999987 55677654 55 8888888 889999853 3334443
No 184
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=83.46 E-value=2.2 Score=32.42 Aligned_cols=49 Identities=14% Similarity=0.099 Sum_probs=37.6
Q ss_pred CCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEEe
Q psy16481 22 QKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFP 71 (175)
Q Consensus 22 ~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~ 71 (175)
..+-+.+.+. |+.|+++ ++++++||.+...+...++.+++...++.+++
T Consensus 91 ~~~~~g~~~~-l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~~~~ 140 (222)
T PRK10826 91 RPLLPGVREA-LALCKAQGLKIGLASASPLHMLEAVLTMFDLRDYFDALAS 140 (222)
T ss_pred CCCCCCHHHH-HHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchhcccEEEE
Confidence 3566788898 9999999 99999999998888777777665444444443
No 185
>COG3700 AphA Acid phosphatase (class B) [General function prediction only]
Probab=81.82 E-value=2.5 Score=31.76 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=31.3
Q ss_pred eEEEEecCCCccCCC-------C--------------------------CCCHHHHHHHHHhhCCC-eEEEEEcCCCHHH
Q psy16481 7 TICLFDVDGTLTQPR-------Q--------------------------KAQNETLDFLLKKLKPL-SHLAIVSGSDMNK 52 (175)
Q Consensus 7 kli~~DlDGTLl~~~-------~--------------------------~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~ 52 (175)
-.|-||+|.|+|-+. + .|+.+....+|.-.+.+ -.++++|||....
T Consensus 64 i~VsFDIDDTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~RGD~i~FvTGRt~gk 143 (237)
T COG3700 64 IAVSFDIDDTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIYFVTGRTPGK 143 (237)
T ss_pred eeEeeccCCeeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 457899999998632 1 34444444424444455 8899999999875
Q ss_pred H
Q psy16481 53 V 53 (175)
Q Consensus 53 ~ 53 (175)
.
T Consensus 144 ~ 144 (237)
T COG3700 144 T 144 (237)
T ss_pred c
Confidence 4
No 186
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=81.81 E-value=1.7 Score=31.70 Aligned_cols=46 Identities=22% Similarity=0.255 Sum_probs=32.7
Q ss_pred CCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEEe
Q psy16481 23 KAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFP 71 (175)
Q Consensus 23 ~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~ 71 (175)
.+-+...+. |+.|+++ +.++++|++ ..+...++..++...++.+++
T Consensus 88 ~~~~g~~~~-l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~~~f~~v~~ 134 (185)
T TIGR02009 88 EVLPGIENF-LKRLKKKGIAVGLGSSS--KNADRILAKLGLTDYFDAIVD 134 (185)
T ss_pred CCCcCHHHH-HHHHHHcCCeEEEEeCc--hhHHHHHHHcChHHHCCEeee
Confidence 566778888 9999998 999999998 445556666554433444443
No 187
>KOG3085|consensus
Probab=81.38 E-value=2.1 Score=33.47 Aligned_cols=17 Identities=29% Similarity=0.288 Sum_probs=14.9
Q ss_pred CCcceEEEEecCCCccC
Q psy16481 3 CRANTICLFDVDGTLTQ 19 (175)
Q Consensus 3 ~~~~kli~~DlDGTLl~ 19 (175)
...+|+|.||++|||+.
T Consensus 4 ~~~iravtfD~~~tLl~ 20 (237)
T KOG3085|consen 4 LMRIRAVTFDAGGTLLA 20 (237)
T ss_pred ccceEEEEEeCCCceee
Confidence 45789999999999986
No 188
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=81.24 E-value=1.8 Score=33.60 Aligned_cols=39 Identities=5% Similarity=0.066 Sum_probs=31.2
Q ss_pred CCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCc
Q psy16481 23 KAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKV 62 (175)
Q Consensus 23 ~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~ 62 (175)
.+-+...+. |+.|+++ ++++|+||.+...+...++.+++
T Consensus 99 ~~~pg~~e~-L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl 138 (253)
T TIGR01422 99 SPIPGVIEV-IAYLRARGIKIGSTTGYTREMMDVVAPEAAL 138 (253)
T ss_pred ccCCCHHHH-HHHHHHCCCeEEEECCCcHHHHHHHHHHHHh
Confidence 455677888 9999998 99999999999887776665443
No 189
>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.
Probab=81.01 E-value=1.8 Score=40.84 Aligned_cols=39 Identities=13% Similarity=0.148 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCc
Q psy16481 23 KAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKV 62 (175)
Q Consensus 23 ~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~ 62 (175)
++-+++.++ |++++++ ++++++|||++..+....+..|+
T Consensus 568 plr~~v~~a-I~~l~~~Gi~v~~~TGd~~~ta~~ia~~~gi 607 (997)
T TIGR01106 568 PPRAAVPDA-VGKCRSAGIKVIMVTGDHPITAKAIAKGVGI 607 (997)
T ss_pred CChHHHHHH-HHHHHHCCCeEEEECCCCHHHHHHHHHHcCC
Confidence 567889999 9999999 99999999999998887777654
No 190
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=80.42 E-value=2.5 Score=33.53 Aligned_cols=48 Identities=23% Similarity=0.203 Sum_probs=35.6
Q ss_pred CCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEEe
Q psy16481 23 KAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFP 71 (175)
Q Consensus 23 ~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~ 71 (175)
.+-+...+. |+.|+++ ++++++||.+...+...++..++...++.+++
T Consensus 101 ~~~~g~~e~-L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~~~f~~i~~ 149 (272)
T PRK13223 101 VVYPGVRDT-LKWLKKQGVEMALITNKPERFVAPLLDQMKIGRYFRWIIG 149 (272)
T ss_pred ccCCCHHHH-HHHHHHCCCeEEEEECCcHHHHHHHHHHcCcHhhCeEEEe
Confidence 456788898 9999998 99999999988877777766554333444443
No 191
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=80.35 E-value=2.7 Score=36.84 Aligned_cols=58 Identities=19% Similarity=0.311 Sum_probs=48.2
Q ss_pred CcceEEEEecCCCccCC---CCCCCHHHHHHHHHhhCCC--eEEEEEcCCCHHHHHHHhcCCCc
Q psy16481 4 RANTICLFDVDGTLTQP---RQKAQNETLDFLLKKLKPL--SHLAIVSGSDMNKVAEQLGGEKV 62 (175)
Q Consensus 4 ~~~kli~~DlDGTLl~~---~~~i~~~~~~~~l~~l~~~--i~~~iaTGR~~~~~~~~~~~~~~ 62 (175)
+..+.+++..||+++.- +.++-+...++ |++|+++ ++++++||.+.......++.+|+
T Consensus 362 ~g~~~~~v~~~~~~~g~i~~~d~~~~g~~e~-l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi 424 (556)
T TIGR01525 362 QGKTVVFVAVDGELLGVIALRDQLRPEAKEA-IAALKRAGGIKLVMLTGDNRSAAEAVAAELGI 424 (556)
T ss_pred CCcEEEEEEECCEEEEEEEecccchHhHHHH-HHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCC
Confidence 34577889999998773 45788999999 9999875 89999999999988888887664
No 192
>KOG2882|consensus
Probab=79.41 E-value=2.5 Score=34.19 Aligned_cols=47 Identities=21% Similarity=0.297 Sum_probs=31.5
Q ss_pred cceEEEEecCCCccCCCCCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHH
Q psy16481 5 ANTICLFDVDGTLTQPRQKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKV 53 (175)
Q Consensus 5 ~~kli~~DlDGTLl~~~~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~ 53 (175)
+.-.+.||-||-|+.-+..| |.+.++ +..|++. -.++++|-.+..+.
T Consensus 21 ~~DtfifDcDGVlW~g~~~i-pGs~e~-l~~L~~~gK~i~fvTNNStksr 68 (306)
T KOG2882|consen 21 SFDTFIFDCDGVLWLGEKPI-PGSPEA-LNLLKSLGKQIIFVTNNSTKSR 68 (306)
T ss_pred hcCEEEEcCCcceeecCCCC-CChHHH-HHHHHHcCCcEEEEeCCCcchH
Confidence 45679999999999965544 455566 6666665 55666665555544
No 193
>KOG4549|consensus
Probab=79.03 E-value=5 Score=28.39 Aligned_cols=49 Identities=18% Similarity=0.109 Sum_probs=35.6
Q ss_pred eEEEEecCCCccCCCC---------CCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHH
Q psy16481 7 TICLFDVDGTLTQPRQ---------KAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQ 56 (175)
Q Consensus 7 kli~~DlDGTLl~~~~---------~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~ 56 (175)
++|.+|+|+||-+... .+=+..+.. |..|+++ +..++||-.+-..+..+
T Consensus 19 ~~vdthl~~pfkP~k~~~g~~g~e~~fY~Di~rI-L~dLk~~GVtl~~ASRt~ap~iA~q 77 (144)
T KOG4549|consen 19 RLVDTHLDYPFKPFKCECGSKGEEMIFYDDIRRI-LVDLKKLGVTLIHASRTMAPQIASQ 77 (144)
T ss_pred EEEEecccccccccccCcccCcceeeeccchhHH-HHHHHhcCcEEEEecCCCCHHHHHH
Confidence 6788888888887431 223344565 9999999 99999987777766543
No 194
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=78.92 E-value=2.7 Score=33.12 Aligned_cols=21 Identities=10% Similarity=0.086 Sum_probs=17.5
Q ss_pred HHhhCCC-eEEEEEcCCCHHHH
Q psy16481 33 LKKLKPL-SHLAIVSGSDMNKV 53 (175)
Q Consensus 33 l~~l~~~-i~~~iaTGR~~~~~ 53 (175)
|+.++++ +.++..|.|+....
T Consensus 90 i~~lq~~~~~v~alT~~~~~~~ 111 (252)
T PF11019_consen 90 INSLQNKGIPVIALTARGPNME 111 (252)
T ss_pred HHHHHHCCCcEEEEcCCChhhH
Confidence 6778888 99999999997754
No 195
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=78.79 E-value=9.8 Score=28.95 Aligned_cols=75 Identities=12% Similarity=0.133 Sum_probs=45.2
Q ss_pred CCHHHHHHHHH-hhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEEecCCceeeeCCeEeeccchhhhhCHHHHHHH
Q psy16481 24 AQNETLDFLLK-KLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLVAYKNGKLFEKKSIIDHMGEDKIQTF 101 (175)
Q Consensus 24 i~~~~~~~~l~-~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~~NGa~i~~~~~~i~~~~l~~~l~~~~~~~i 101 (175)
+-|...+. |+ .++++ +.++|||+.+-..+.+.....++.. .+.+||.+ -.+.++|++.-.... .++.++++
T Consensus 95 l~pga~e~-L~~~l~~~G~~v~IvSas~~~~~~~ia~~~~~~~-~~~~i~t~-le~~~gg~~~g~~c~----g~~Kv~rl 167 (210)
T TIGR01545 95 AFPLVAER-LRQYLESSDADIWLITGSPQPLVEAVYFDSNFIH-RLNLIASQ-IERGNGGWVLPLRCL----GHEKVAQL 167 (210)
T ss_pred CCccHHHH-HHHHHHhCCCEEEEEcCCcHHHHHHHHHhccccc-cCcEEEEE-eEEeCCceEcCccCC----ChHHHHHH
Confidence 45778888 95 77877 9999999999887777664432211 12455422 222122443323334 67777777
Q ss_pred HHHH
Q psy16481 102 INYC 105 (175)
Q Consensus 102 ~~~~ 105 (175)
-+++
T Consensus 168 ~~~~ 171 (210)
T TIGR01545 168 EQKI 171 (210)
T ss_pred HHHh
Confidence 6665
No 196
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=78.04 E-value=3.2 Score=32.71 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=20.0
Q ss_pred cceEEEEecCCCccC----------CCCCCCHHHHHH
Q psy16481 5 ANTICLFDVDGTLTQ----------PRQKAQNETLDF 31 (175)
Q Consensus 5 ~~kli~~DlDGTLl~----------~~~~i~~~~~~~ 31 (175)
+.+.|++|||-|.|+ +++.++|++...
T Consensus 78 K~~aVvlDlDETvLdNs~Yqgy~v~nnk~f~pe~Wd~ 114 (274)
T COG2503 78 KKKAVVLDLDETVLDNSAYQGYQVLNNKGFTPETWDK 114 (274)
T ss_pred CCceEEEecchHhhcCccccchhhhcCCCCCccchHH
Confidence 456999999999998 334566666554
No 197
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=77.74 E-value=3.8 Score=29.63 Aligned_cols=47 Identities=21% Similarity=0.233 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEEe
Q psy16481 23 KAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFP 71 (175)
Q Consensus 23 ~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~ 71 (175)
.+-+...+. |++|+++ ++++++|+.+... ......+++...++.+++
T Consensus 85 ~~~~g~~~~-l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~~~f~~i~~ 132 (183)
T TIGR01509 85 KPLPGVEPL-LEALRARGKKLALLTNSPRDH-AVLVQELGLRDLFDVVIF 132 (183)
T ss_pred ccCcCHHHH-HHHHHHCCCeEEEEeCCchHH-HHHHHhcCCHHHCCEEEE
Confidence 456788888 9999998 9999999998876 444433444344555554
No 198
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=77.34 E-value=3.5 Score=30.96 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHhhCCCeEEEEEcCCCHHHHHHHhcCCCcccccceEEe
Q psy16481 23 KAQNETLDFLLKKLKPLSHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFP 71 (175)
Q Consensus 23 ~i~~~~~~~~l~~l~~~i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~ 71 (175)
++-+...+. |++|++++.++++|+.+...+...+..+++...++.+++
T Consensus 97 ~~~~g~~~~-L~~l~~~~~~~i~Sn~~~~~~~~~l~~~~l~~~fd~i~~ 144 (224)
T TIGR02254 97 QLLPGAFEL-MENLQQKFRLYIVTNGVRETQYKRLRKSGLFPFFDDIFV 144 (224)
T ss_pred eeCccHHHH-HHHHHhcCcEEEEeCCchHHHHHHHHHCCcHhhcCEEEE
Confidence 466778888 999988788999999988888777777665444555544
No 199
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=76.79 E-value=1.4 Score=36.42 Aligned_cols=20 Identities=30% Similarity=0.293 Sum_probs=16.9
Q ss_pred CCCcceEEEEecCCCccCCC
Q psy16481 2 TCRANTICLFDVDGTLTQPR 21 (175)
Q Consensus 2 ~~~~~kli~~DlDGTLl~~~ 21 (175)
...+++.|-||||.||..=+
T Consensus 8 ~l~~i~~~GFDmDyTLa~Y~ 27 (343)
T TIGR02244 8 NLEKIQVFGFDMDYTLAQYK 27 (343)
T ss_pred ccccCCEEEECccccccccC
Confidence 46789999999999998743
No 200
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=76.48 E-value=6.1 Score=31.67 Aligned_cols=40 Identities=23% Similarity=0.162 Sum_probs=34.0
Q ss_pred CCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCc
Q psy16481 22 QKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKV 62 (175)
Q Consensus 22 ~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~ 62 (175)
-.+.+...+. ++.|+++ +.++|+||.....+...++..++
T Consensus 120 l~l~pG~~ef-l~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl 160 (277)
T TIGR01544 120 VMLKDGYENF-FDKLQQHSIPVFIFSAGIGNVLEEVLRQAGV 160 (277)
T ss_pred CccCcCHHHH-HHHHHHCCCcEEEEeCCcHHHHHHHHHHcCC
Confidence 3677888888 9999998 99999999999888888876654
No 201
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=76.24 E-value=4.5 Score=29.77 Aligned_cols=39 Identities=21% Similarity=0.116 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCc
Q psy16481 23 KAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKV 62 (175)
Q Consensus 23 ~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~ 62 (175)
.+-+...+. |+.|+++ +.++|+||.....+...++.+|+
T Consensus 80 ~~~~g~~e~-l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~ 119 (201)
T TIGR01491 80 SLRDYAEEL-VRWLKEKGLKTAIVSGGIMCLAKKVAEKLNP 119 (201)
T ss_pred CCCccHHHH-HHHHHHCCCEEEEEeCCcHHHHHHHHHHhCC
Confidence 466778888 9999998 99999999998888887777654
No 202
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=74.78 E-value=10 Score=30.00 Aligned_cols=79 Identities=19% Similarity=0.300 Sum_probs=49.1
Q ss_pred ecCCCccCCCC---CCCHHHHHHHHHhhCCCeEEEEEcCCCHHHHHHHhcCCCcccccceEEecCCceeeeCCeEeeccc
Q psy16481 12 DVDGTLTQPRQ---KAQNETLDFLLKKLKPLSHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLVAYKNGKLFEKKS 88 (175)
Q Consensus 12 DlDGTLl~~~~---~i~~~~~~~~l~~l~~~i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~~NGa~i~~~~~~i~~~~ 88 (175)
--||-.+.... ..+.+..+. +++... ..+.+-||=....+.+++..- |.+|- |+.+.++|+. .++
T Consensus 172 ~aDaviVtG~~TG~~~~~~~l~~-vr~~~~-~PVlvGSGvt~~Ni~~~l~~A------DG~IV--GS~~K~~G~~--~n~ 239 (254)
T PF03437_consen 172 GADAVIVTGKATGEPPDPEKLKR-VREAVP-VPVLVGSGVTPENIAEYLSYA------DGAIV--GSYFKKDGKW--ENP 239 (254)
T ss_pred CCCEEEECCcccCCCCCHHHHHH-HHhcCC-CCEEEecCCCHHHHHHHHHhC------CEEEE--eeeeeeCCEe--CCc
Confidence 34666666433 444444444 443333 788899999999888887542 23332 5556556653 445
Q ss_pred hhhhhCHHHHHHHHHHHH
Q psy16481 89 IIDHMGEDKIQTFINYCL 106 (175)
Q Consensus 89 l~~~l~~~~~~~i~~~~~ 106 (175)
+ +++.++++++.++
T Consensus 240 V----D~~Rv~~fm~~v~ 253 (254)
T PF03437_consen 240 V----DPERVRRFMEAVK 253 (254)
T ss_pred C----CHHHHHHHHHHhh
Confidence 6 9999999987765
No 203
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=74.48 E-value=4.5 Score=35.38 Aligned_cols=55 Identities=16% Similarity=0.225 Sum_probs=44.4
Q ss_pred eEEEEecCCCccC---CCCCCCHHHHHHHHHhhCCC-e-EEEEEcCCCHHHHHHHhcCCCc
Q psy16481 7 TICLFDVDGTLTQ---PRQKAQNETLDFLLKKLKPL-S-HLAIVSGSDMNKVAEQLGGEKV 62 (175)
Q Consensus 7 kli~~DlDGTLl~---~~~~i~~~~~~~~l~~l~~~-i-~~~iaTGR~~~~~~~~~~~~~~ 62 (175)
..+..-.||++.. ....+-+...++ |++|+++ + +++++||.+.......++.+|+
T Consensus 343 ~~~~v~~~~~~~g~i~~~d~l~~~~~e~-i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi 402 (536)
T TIGR01512 343 TIVHVARDGTYLGYILLSDEPRPDAAEA-IAELKALGIEKVVMLTGDRRAVAERVARELGI 402 (536)
T ss_pred eEEEEEECCEEEEEEEEeccchHHHHHH-HHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCC
Confidence 4456666777755 244788899999 9999999 9 9999999999998888888764
No 204
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=74.03 E-value=4.6 Score=34.50 Aligned_cols=48 Identities=8% Similarity=-0.009 Sum_probs=38.1
Q ss_pred CCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEEe
Q psy16481 23 KAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFP 71 (175)
Q Consensus 23 ~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~ 71 (175)
++-|...+. |+.|+++ ++++|+|+.+...+...++.+++...++.+++
T Consensus 330 ~l~pG~~e~-L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~~f~~i~~ 378 (459)
T PRK06698 330 ALYPNVKEI-FTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQWVTETFS 378 (459)
T ss_pred CcCCCHHHH-HHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHhhcceeEe
Confidence 455778888 9999998 99999999999999888887765444555554
No 205
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=73.86 E-value=5.1 Score=36.56 Aligned_cols=58 Identities=14% Similarity=0.193 Sum_probs=47.5
Q ss_pred CcceEEEEecCCCccC---CCCCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCc
Q psy16481 4 RANTICLFDVDGTLTQ---PRQKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKV 62 (175)
Q Consensus 4 ~~~kli~~DlDGTLl~---~~~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~ 62 (175)
...+.+++=.||+++- -..++-++..++ |++|+++ ++++++||..........+.+|+
T Consensus 546 ~g~~~v~va~~~~~~g~i~l~d~~r~~a~~~-i~~L~~~gi~~~llTGd~~~~a~~ia~~lgi 607 (741)
T PRK11033 546 AGKTVVLVLRNDDVLGLIALQDTLRADARQA-ISELKALGIKGVMLTGDNPRAAAAIAGELGI 607 (741)
T ss_pred CCCEEEEEEECCEEEEEEEEecCCchhHHHH-HHHHHHCCCEEEEEcCCCHHHHHHHHHHcCC
Confidence 3456777778888765 345788899999 9999999 99999999999999888888764
No 206
>KOG1605|consensus
Probab=72.81 E-value=2.3 Score=33.81 Aligned_cols=18 Identities=22% Similarity=0.351 Sum_probs=15.8
Q ss_pred CcceEEEEecCCCccCCC
Q psy16481 4 RANTICLFDVDGTLTQPR 21 (175)
Q Consensus 4 ~~~kli~~DlDGTLl~~~ 21 (175)
.++|.+++|||+||+.+.
T Consensus 87 ~~kk~lVLDLDeTLvHss 104 (262)
T KOG1605|consen 87 VGRKTLVLDLDETLVHSS 104 (262)
T ss_pred CCCceEEEeCCCcccccc
Confidence 467999999999998876
No 207
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=72.63 E-value=5.6 Score=30.44 Aligned_cols=47 Identities=11% Similarity=0.003 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEE
Q psy16481 23 KAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVF 70 (175)
Q Consensus 23 ~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i 70 (175)
.+-+...+. |+.|+++ +.++++|+.+...+...++..++...++.++
T Consensus 95 ~~~pg~~~~-L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~~~f~~i~ 142 (229)
T PRK13226 95 QLFDGVEGM-LQRLECAGCVWGIVTNKPEYLARLILPQLGWEQRCAVLI 142 (229)
T ss_pred eeCCCHHHH-HHHHHHCCCeEEEECCCCHHHHHHHHHHcCchhcccEEE
Confidence 456677888 9999998 9999999998877766666655433344343
No 208
>COG5663 Uncharacterized conserved protein [Function unknown]
Probab=71.89 E-value=1.9 Score=31.98 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=16.2
Q ss_pred CcceEEEEecCCCccCCCCCCC
Q psy16481 4 RANTICLFDVDGTLTQPRQKAQ 25 (175)
Q Consensus 4 ~~~kli~~DlDGTLl~~~~~i~ 25 (175)
+.-.=++.|+|||++.+...++
T Consensus 4 ~~~~~~ciDIDGtit~~~t~~~ 25 (194)
T COG5663 4 KFQLRCCIDIDGTITDDPTFAP 25 (194)
T ss_pred hhHhheeeccCCceecCcccch
Confidence 3344578999999999776444
No 209
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=71.81 E-value=5.3 Score=31.30 Aligned_cols=37 Identities=8% Similarity=0.078 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCC
Q psy16481 23 KAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGE 60 (175)
Q Consensus 23 ~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~ 60 (175)
.+-+...+. |+.|+++ ++++|+||.+...+...++..
T Consensus 101 ~~~pg~~el-L~~L~~~g~~l~I~T~~~~~~~~~~l~~~ 138 (267)
T PRK13478 101 TPIPGVLEV-IAALRARGIKIGSTTGYTREMMDVVVPLA 138 (267)
T ss_pred CCCCCHHHH-HHHHHHCCCEEEEEcCCcHHHHHHHHHHH
Confidence 455677888 9999998 999999999998876666543
No 210
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=69.92 E-value=4 Score=31.26 Aligned_cols=47 Identities=26% Similarity=0.340 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEE
Q psy16481 23 KAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVF 70 (175)
Q Consensus 23 ~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i 70 (175)
..-+...+. |+.|+++ +.++++|+++...+...+...++...++.+|
T Consensus 86 ~~~pGv~~~-l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~~~f~~~v 133 (221)
T COG0637 86 KPIPGVVEL-LEQLKARGIPLAVASSSPRRAAERVLARLGLLDYFDVIV 133 (221)
T ss_pred CCCccHHHH-HHHHHhcCCcEEEecCChHHHHHHHHHHccChhhcchhc
Confidence 455677888 9999999 9999999999888888887666544444443
No 211
>PRK09449 dUMP phosphatase; Provisional
Probab=69.58 E-value=8.1 Score=29.15 Aligned_cols=48 Identities=13% Similarity=0.211 Sum_probs=34.8
Q ss_pred CCCHHHHHHHHHhhCCCeEEEEEcCCCHHHHHHHhcCCCcccccceEEe
Q psy16481 23 KAQNETLDFLLKKLKPLSHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFP 71 (175)
Q Consensus 23 ~i~~~~~~~~l~~l~~~i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~ 71 (175)
++-+...+. |+.|+++++++++|..+.......++..++...++.+++
T Consensus 95 ~~~~g~~~~-L~~L~~~~~~~i~Tn~~~~~~~~~l~~~~l~~~fd~v~~ 142 (224)
T PRK09449 95 TPLPGAVEL-LNALRGKVKMGIITNGFTELQQVRLERTGLRDYFDLLVI 142 (224)
T ss_pred ccCccHHHH-HHHHHhCCeEEEEeCCcHHHHHHHHHhCChHHHcCEEEE
Confidence 355677888 999984499999999887777766777665444555554
No 212
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=69.52 E-value=7.8 Score=28.28 Aligned_cols=43 Identities=19% Similarity=0.212 Sum_probs=31.4
Q ss_pred HHHHHHHhhCCCeEEEEEcCCCHHHHHHHhcCCCcccccceEEe
Q psy16481 28 TLDFLLKKLKPLSHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFP 71 (175)
Q Consensus 28 ~~~~~l~~l~~~i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~ 71 (175)
..+. |+.|++++.++|+||.+...+...++..++...++.+++
T Consensus 92 ~~e~-L~~L~~~~~l~I~T~~~~~~~~~~l~~~~l~~~fd~i~~ 134 (188)
T PRK10725 92 LIEV-VKAWHGRRPMAVGTGSESAIAEALLAHLGLRRYFDAVVA 134 (188)
T ss_pred HHHH-HHHHHhCCCEEEEcCCchHHHHHHHHhCCcHhHceEEEe
Confidence 3577 888876688999999988888888887765444444443
No 213
>TIGR01497 kdpB K+-transporting ATPase, B subunit. One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.
Probab=69.05 E-value=7 Score=35.34 Aligned_cols=57 Identities=11% Similarity=0.119 Sum_probs=46.6
Q ss_pred cceEEEEecCCCccC---CCCCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCc
Q psy16481 5 ANTICLFDVDGTLTQ---PRQKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKV 62 (175)
Q Consensus 5 ~~kli~~DlDGTLl~---~~~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~ 62 (175)
..+.+++-.|++++- =...+-++..++ +++|++. ++++++||..........+++|+
T Consensus 425 G~r~l~va~~~~~lG~i~l~D~~Rp~a~ea-I~~l~~~Gi~v~miTGD~~~ta~~iA~~lGI 485 (675)
T TIGR01497 425 GGTPLVVCEDNRIYGVIYLKDIVKGGIKER-FAQLRKMGIKTIMITGDNRLTAAAIAAEAGV 485 (675)
T ss_pred CCeEEEEEECCEEEEEEEecccchhHHHHH-HHHHHHCCCEEEEEcCCCHHHHHHHHHHcCC
Confidence 346677767888765 334788899999 9999999 99999999999998888888764
No 214
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=68.11 E-value=8.8 Score=29.01 Aligned_cols=12 Identities=42% Similarity=0.736 Sum_probs=10.6
Q ss_pred EEEEecCCCccC
Q psy16481 8 ICLFDVDGTLTQ 19 (175)
Q Consensus 8 li~~DlDGTLl~ 19 (175)
.|+||+||||+.
T Consensus 1 ~~~fDFDgTit~ 12 (214)
T TIGR03333 1 FIICDFDGTITN 12 (214)
T ss_pred CEEeccCCCCCc
Confidence 389999999986
No 215
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=68.01 E-value=3.9 Score=30.28 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCc
Q psy16481 23 KAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKV 62 (175)
Q Consensus 23 ~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~ 62 (175)
++-+...++ |+.|+++ ++++++||............+|+
T Consensus 127 ~~~~~~~~~-l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi 166 (215)
T PF00702_consen 127 PLRPGAKEA-LQELKEAGIKVAILTGDNESTASAIAKQLGI 166 (215)
T ss_dssp EBHTTHHHH-HHHHHHTTEEEEEEESSEHHHHHHHHHHTTS
T ss_pred cchhhhhhh-hhhhhccCcceeeeecccccccccccccccc
Confidence 566788999 9999999 99999999999998877777654
No 216
>PLN02588 glycerol-3-phosphate acyltransferase
Probab=64.45 E-value=4.9 Score=35.01 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=17.4
Q ss_pred ceEEEEecCCCccCCCCCCCHH
Q psy16481 6 NTICLFDVDGTLTQPRQKAQNE 27 (175)
Q Consensus 6 ~kli~~DlDGTLl~~~~~i~~~ 27 (175)
.+.+++|+|||||.+...++-.
T Consensus 50 ~~t~v~d~~g~Ll~s~s~Fpyf 71 (525)
T PLN02588 50 NHTLIFNVEGALLKSNSLFPYF 71 (525)
T ss_pred cceEEEecccceeccCCCCcce
Confidence 4569999999999987655543
No 217
>PRK01122 potassium-transporting ATPase subunit B; Provisional
Probab=63.49 E-value=10 Score=34.32 Aligned_cols=57 Identities=11% Similarity=0.126 Sum_probs=46.5
Q ss_pred cceEEEEecCCCccC---CCCCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCc
Q psy16481 5 ANTICLFDVDGTLTQ---PRQKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKV 62 (175)
Q Consensus 5 ~~kli~~DlDGTLl~---~~~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~ 62 (175)
..+.+++-.|++++- =...+-++.+++ +++|++. ++++++||-..........+.|+
T Consensus 424 G~~~l~va~~~~~lG~i~l~D~~R~~~~ea-i~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI 484 (679)
T PRK01122 424 GGTPLVVAEDNRVLGVIYLKDIVKPGIKER-FAELRKMGIKTVMITGDNPLTAAAIAAEAGV 484 (679)
T ss_pred CCcEEEEEECCeEEEEEEEeccCchhHHHH-HHHHHHCCCeEEEECCCCHHHHHHHHHHcCC
Confidence 346667767888765 234688899999 9999999 99999999999999888887764
No 218
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=63.10 E-value=16 Score=27.72 Aligned_cols=13 Identities=31% Similarity=0.629 Sum_probs=11.9
Q ss_pred eEEEEecCCCccC
Q psy16481 7 TICLFDVDGTLTQ 19 (175)
Q Consensus 7 kli~~DlDGTLl~ 19 (175)
++++|||||||++
T Consensus 2 ~la~FDlD~TLi~ 14 (203)
T TIGR02137 2 EIACLDLEGVLVP 14 (203)
T ss_pred eEEEEeCCcccHH
Confidence 5799999999997
No 219
>KOG2469|consensus
Probab=62.46 E-value=3.6 Score=34.66 Aligned_cols=24 Identities=25% Similarity=0.166 Sum_probs=18.5
Q ss_pred CCcceEEEEecCCCccCCCCCCCH
Q psy16481 3 CRANTICLFDVDGTLTQPRQKAQN 26 (175)
Q Consensus 3 ~~~~kli~~DlDGTLl~~~~~i~~ 26 (175)
.+++..|.||||+||..-+..-.+
T Consensus 24 l~~i~~~GfdmDyTL~~Y~~~~~e 47 (424)
T KOG2469|consen 24 LENIGIVGFDMDYTLARYNLPEME 47 (424)
T ss_pred hhcCcEEeeccccchhhhcccchH
Confidence 457899999999999986543333
No 220
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=62.18 E-value=14 Score=30.55 Aligned_cols=51 Identities=22% Similarity=0.207 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCC-C-------cccccceEEecCC
Q psy16481 23 KAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGE-K-------VLEQFDFVFPENG 74 (175)
Q Consensus 23 ~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~-~-------~~~~~~~~i~~NG 74 (175)
..+|...+. |++|+++ ++++|+|+.+.......+..+ + +...++.+|+...
T Consensus 184 ~~~pgl~el-L~~Lr~~G~klfLvTNS~~~yt~~im~~l~g~~~~~~~w~~yFD~IIt~a~ 243 (343)
T TIGR02244 184 LRDPKLPLF-LSKLKEHGKKLFLLTNSDYDYTDKGMKYLLGPFLGEHDWRDYFDVVIVDAR 243 (343)
T ss_pred ccchhHHHH-HHHHHHCCCeEEEEeCCCHHHHHHHHHHhhCCcccccchHhhCcEEEeCCC
Confidence 447788888 9999999 999999999998765544442 2 3344566665444
No 221
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=61.84 E-value=11 Score=28.01 Aligned_cols=46 Identities=28% Similarity=0.418 Sum_probs=32.0
Q ss_pred CCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEE
Q psy16481 23 KAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVF 70 (175)
Q Consensus 23 ~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i 70 (175)
.+-+.+.++ |++|+++ ++++|+|+.+.. +...++..++...++.++
T Consensus 105 ~~~~g~~~~-l~~L~~~g~~~~i~Sn~~~~-~~~~l~~~~l~~~fd~i~ 151 (203)
T TIGR02252 105 QVYPDAIKL-LKDLRERGLILGVISNFDSR-LRGLLEALGLLEYFDFVV 151 (203)
T ss_pred eeCcCHHHH-HHHHHHCCCEEEEEeCCchh-HHHHHHHCCcHHhcceEE
Confidence 456788888 9999998 999999987653 455666655433344444
No 222
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=61.61 E-value=9.2 Score=26.91 Aligned_cols=34 Identities=26% Similarity=0.308 Sum_probs=27.7
Q ss_pred CHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcC
Q psy16481 25 QNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGG 59 (175)
Q Consensus 25 ~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~ 59 (175)
-+...+. |+.|+++ ++++++|++....+...++.
T Consensus 66 ~~g~~e~-l~~L~~~g~~~~i~T~~~~~~~~~~~~~ 100 (154)
T TIGR01549 66 IRGAADL-LKRLKEAGIKLGIISNGSLRAQKLLLRK 100 (154)
T ss_pred ccCHHHH-HHHHHHCcCeEEEEeCCchHHHHHHHHH
Confidence 3567888 9999888 99999999998887665554
No 223
>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.
Probab=58.82 E-value=18 Score=33.83 Aligned_cols=58 Identities=7% Similarity=0.055 Sum_probs=45.0
Q ss_pred CcceEEEEecCC-----CccC---CCCCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCc
Q psy16481 4 RANTICLFDVDG-----TLTQ---PRQKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKV 62 (175)
Q Consensus 4 ~~~kli~~DlDG-----TLl~---~~~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~ 62 (175)
+..+.+++=.++ |++- -..++-+...++ |+++++. ++++++||.....+.......|+
T Consensus 501 ~G~rvl~~A~~~~~~~l~~lGli~l~Dp~r~~~~~~-i~~l~~~Gi~v~miTGD~~~tA~~ia~~~Gi 567 (884)
T TIGR01522 501 AGLRVIAFASGPEKGQLTFLGLVGINDPPRPGVKEA-VTTLITGGVRIIMITGDSQETAVSIARRLGM 567 (884)
T ss_pred cCCEEEEEEEEcCCCCeEEEEEEeccCcchhHHHHH-HHHHHHCCCeEEEECCCCHHHHHHHHHHcCC
Confidence 345667766554 4433 344688899999 9999999 99999999999998888877765
No 224
>PRK14010 potassium-transporting ATPase subunit B; Provisional
Probab=58.06 E-value=16 Score=33.02 Aligned_cols=56 Identities=11% Similarity=0.135 Sum_probs=44.0
Q ss_pred ceEEEEecCCCccC---CCCCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCc
Q psy16481 6 NTICLFDVDGTLTQ---PRQKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKV 62 (175)
Q Consensus 6 ~kli~~DlDGTLl~---~~~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~ 62 (175)
.+.++.--|++++- -..++-++.+++ +++|++. ++++++||-.........+++|+
T Consensus 421 ~~~l~v~~~~~~lG~i~l~Dp~R~~a~e~-I~~Lr~~GI~vvMiTGDn~~TA~aIA~elGI 480 (673)
T PRK14010 421 GTPLVVLEDNEILGVIYLKDVIKDGLVER-FRELREMGIETVMCTGDNELTAATIAKEAGV 480 (673)
T ss_pred CeEEEEEECCEEEEEEEeecCCcHHHHHH-HHHHHHCCCeEEEECCCCHHHHHHHHHHcCC
Confidence 34444434777654 234788899999 9999999 99999999999999888888764
No 225
>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V). These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.
Probab=58.01 E-value=11 Score=35.94 Aligned_cols=40 Identities=13% Similarity=0.181 Sum_probs=34.8
Q ss_pred CCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCc
Q psy16481 22 QKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKV 62 (175)
Q Consensus 22 ~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~ 62 (175)
.++-+++.++ |++|++. ++++++||.....+.....+.|+
T Consensus 655 d~lr~~~~~~-I~~l~~agi~v~miTGD~~~TA~~iA~~~gi 695 (1054)
T TIGR01657 655 NPLKPDTKEV-IKELKRASIRTVMITGDNPLTAVHVARECGI 695 (1054)
T ss_pred cCCCccHHHH-HHHHHHCCCeEEEECCCCHHHHHHHHHHcCC
Confidence 3588899999 9999999 99999999999998777766665
No 226
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=57.71 E-value=15 Score=26.56 Aligned_cols=45 Identities=20% Similarity=0.241 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcccccceEE
Q psy16481 23 KAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVF 70 (175)
Q Consensus 23 ~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i 70 (175)
.+-|...+. |+.|+++ ++++++|++... ...++..++...++.++
T Consensus 87 ~~~pg~~~~-L~~L~~~g~~~~i~s~~~~~--~~~l~~~~l~~~f~~~~ 132 (185)
T TIGR01990 87 DVLPGIKNL-LDDLKKNNIKIALASASKNA--PTVLEKLGLIDYFDAIV 132 (185)
T ss_pred ccCccHHHH-HHHHHHCCCeEEEEeCCccH--HHHHHhcCcHhhCcEEE
Confidence 455788888 9999998 999999986532 23455554433344444
No 227
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=57.10 E-value=24 Score=25.70 Aligned_cols=46 Identities=22% Similarity=0.269 Sum_probs=33.1
Q ss_pred CCCHHHHHHHHHhhCCCeEEEEEcCCCHHHHHHHhcCCCcccccceEEe
Q psy16481 23 KAQNETLDFLLKKLKPLSHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFP 71 (175)
Q Consensus 23 ~i~~~~~~~~l~~l~~~i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~ 71 (175)
.+-+...+. |++|+ ..++++|..+...+...++.+|+...++.+++
T Consensus 84 ~~~~g~~~~-L~~L~--~~~~i~Tn~~~~~~~~~l~~~gl~~~fd~i~~ 129 (184)
T TIGR01993 84 KPDPELRNL-LLRLP--GRKIIFTNGDRAHARRALNRLGIEDCFDGIFC 129 (184)
T ss_pred CCCHHHHHH-HHhCC--CCEEEEeCCCHHHHHHHHHHcCcHhhhCeEEE
Confidence 356778888 99887 46788999988888888877665444554444
No 228
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=55.99 E-value=5.8 Score=28.89 Aligned_cols=13 Identities=54% Similarity=0.920 Sum_probs=12.0
Q ss_pred EEEecCCCccCCC
Q psy16481 9 CLFDVDGTLTQPR 21 (175)
Q Consensus 9 i~~DlDGTLl~~~ 21 (175)
++||+||||+..+
T Consensus 1 v~fD~DGTL~~~~ 13 (192)
T PF12710_consen 1 VIFDFDGTLTDSD 13 (192)
T ss_dssp EEEESBTTTBSSH
T ss_pred eEEecCcCeecCC
Confidence 6899999999987
No 229
>KOG2961|consensus
Probab=55.84 E-value=17 Score=26.68 Aligned_cols=35 Identities=17% Similarity=0.238 Sum_probs=29.0
Q ss_pred CcceEEEEecCCCccCCC-CCCCHHHHHHHHHhhCCC
Q psy16481 4 RANTICLFDVDGTLTQPR-QKAQNETLDFLLKKLKPL 39 (175)
Q Consensus 4 ~~~kli~~DlDGTLl~~~-~~i~~~~~~~~l~~l~~~ 39 (175)
+.+|.+++|=|.++.-+. ..|-|..... +++++..
T Consensus 41 ~~ikavVlDKDNcit~P~~~~Iwp~~l~~-ie~~~~v 76 (190)
T KOG2961|consen 41 KGIKAVVLDKDNCITAPYSLAIWPPLLPS-IERCKAV 76 (190)
T ss_pred cCceEEEEcCCCeeeCCcccccCchhHHH-HHHHHHH
Confidence 478999999999997654 4888888888 8888774
No 230
>PRK10671 copA copper exporting ATPase; Provisional
Probab=55.23 E-value=24 Score=32.74 Aligned_cols=57 Identities=18% Similarity=0.298 Sum_probs=45.0
Q ss_pred cceEEEEecCCCccC---CCCCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCc
Q psy16481 5 ANTICLFDVDGTLTQ---PRQKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKV 62 (175)
Q Consensus 5 ~~kli~~DlDGTLl~---~~~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~ 62 (175)
..+.+++-.||+++- -..++-+...++ |++|+++ ++++++||..........+.+|+
T Consensus 629 g~~~v~va~~~~~~g~~~l~d~~r~~a~~~-i~~L~~~gi~v~~~Tgd~~~~a~~ia~~lgi 689 (834)
T PRK10671 629 GATPVLLAVDGKAAALLAIRDPLRSDSVAA-LQRLHKAGYRLVMLTGDNPTTANAIAKEAGI 689 (834)
T ss_pred CCeEEEEEECCEEEEEEEccCcchhhHHHH-HHHHHHCCCeEEEEcCCCHHHHHHHHHHcCC
Confidence 346677777888753 234677788899 9999999 99999999999988888777654
No 231
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=53.74 E-value=56 Score=26.69 Aligned_cols=39 Identities=18% Similarity=0.053 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCC
Q psy16481 22 QKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEK 61 (175)
Q Consensus 22 ~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~ 61 (175)
-++.|...+. |+.|++. ++++|+||..........+.++
T Consensus 180 l~l~pGa~el-L~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lg 219 (322)
T PRK11133 180 LPLMPGLTEL-VLKLQALGWKVAIASGGFTYFADYLRDKLR 219 (322)
T ss_pred CCCChhHHHH-HHHHHHcCCEEEEEECCcchhHHHHHHHcC
Confidence 3678888888 9999999 9999999988665555555544
No 232
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=53.68 E-value=7.9 Score=33.25 Aligned_cols=17 Identities=29% Similarity=0.360 Sum_probs=9.1
Q ss_pred CCcceEEEEecCCCccC
Q psy16481 3 CRANTICLFDVDGTLTQ 19 (175)
Q Consensus 3 ~~~~kli~~DlDGTLl~ 19 (175)
+++++.|.||||-||..
T Consensus 9 l~~i~~iGFDmDyTLa~ 25 (448)
T PF05761_consen 9 LKDIDVIGFDMDYTLAR 25 (448)
T ss_dssp CCC--EEEE-TBTTTBE
T ss_pred cccCCEEEECcccchhh
Confidence 45666677777777755
No 233
>PRK11587 putative phosphatase; Provisional
Probab=53.10 E-value=20 Score=27.04 Aligned_cols=38 Identities=18% Similarity=0.221 Sum_probs=28.9
Q ss_pred CCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCC
Q psy16481 23 KAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEK 61 (175)
Q Consensus 23 ~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~ 61 (175)
.+-|...+. |+.|+++ ++++++|+.+.......+...+
T Consensus 83 ~~~pg~~e~-L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~ 121 (218)
T PRK11587 83 TALPGAIAL-LNHLNKLGIPWAIVTSGSVPVASARHKAAG 121 (218)
T ss_pred eeCcCHHHH-HHHHHHcCCcEEEEcCCCchHHHHHHHhcC
Confidence 455778888 9999998 9999999988766555554443
No 234
>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]
Probab=52.47 E-value=23 Score=32.38 Aligned_cols=54 Identities=15% Similarity=0.281 Sum_probs=45.9
Q ss_pred EEEEecCCCccC---CCCCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCc
Q psy16481 8 ICLFDVDGTLTQ---PRQKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKV 62 (175)
Q Consensus 8 li~~DlDGTLl~---~~~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~ 62 (175)
.+++-.||.++- -..++-++.+++ |++|+++ +++++.||-.....+...+++|+
T Consensus 519 ~v~va~dg~~~g~i~~~D~~R~~a~~a-I~~L~~~Gi~~~mLTGDn~~~A~~iA~~lGI 576 (713)
T COG2217 519 VVFVAVDGKLVGVIALADELRPDAKEA-IAALKALGIKVVMLTGDNRRTAEAIAKELGI 576 (713)
T ss_pred EEEEEECCEEEEEEEEeCCCChhHHHH-HHHHHHCCCeEEEEcCCCHHHHHHHHHHcCh
Confidence 688889997755 234688899999 9999999 99999999999999888888764
No 235
>PLN02811 hydrolase
Probab=49.97 E-value=25 Score=26.52 Aligned_cols=31 Identities=16% Similarity=0.221 Sum_probs=25.0
Q ss_pred CCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHH
Q psy16481 23 KAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVA 54 (175)
Q Consensus 23 ~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~ 54 (175)
.+-+...+. |+.|+++ ++++|+||.....+.
T Consensus 78 ~l~~gv~e~-l~~L~~~g~~~~i~S~~~~~~~~ 109 (220)
T PLN02811 78 DLMPGAERL-VRHLHAKGIPIAIATGSHKRHFD 109 (220)
T ss_pred CCCccHHHH-HHHHHHCCCcEEEEeCCchhhHH
Confidence 445778888 9999998 999999998776443
No 236
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=49.58 E-value=21 Score=26.55 Aligned_cols=27 Identities=15% Similarity=0.128 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHHhhCCC-eEEEEEcCCCH
Q psy16481 23 KAQNETLDFLLKKLKPL-SHLAIVSGSDM 50 (175)
Q Consensus 23 ~i~~~~~~~~l~~l~~~-i~~~iaTGR~~ 50 (175)
.+-+...+. |++|+++ ++++++|....
T Consensus 94 ~~~~~~~~~-L~~L~~~g~~l~i~Sn~~~ 121 (211)
T TIGR02247 94 KLRPSMMAA-IKTLRAKGFKTACITNNFP 121 (211)
T ss_pred ccChhHHHH-HHHHHHCCCeEEEEeCCCC
Confidence 567888898 9999998 99999998654
No 237
>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase. This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.
Probab=47.58 E-value=25 Score=32.27 Aligned_cols=41 Identities=12% Similarity=0.237 Sum_probs=36.1
Q ss_pred CCCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCc
Q psy16481 21 RQKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKV 62 (175)
Q Consensus 21 ~~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~ 62 (175)
..++-++..++ |+++++. +++++.||..........+.+|+
T Consensus 440 ~Dp~R~~a~~a-I~~l~~aGI~v~miTGD~~~tA~~IA~~lGI 481 (755)
T TIGR01647 440 FDPPRHDTKET-IERARHLGVEVKMVTGDHLAIAKETARRLGL 481 (755)
T ss_pred cCCChhhHHHH-HHHHHHCCCeEEEECCCCHHHHHHHHHHcCC
Confidence 34688899999 9999999 99999999999998888887765
No 238
>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3.1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm
Probab=46.89 E-value=25 Score=27.93 Aligned_cols=14 Identities=29% Similarity=0.316 Sum_probs=12.3
Q ss_pred EEEecCCCccCCCC
Q psy16481 9 CLFDVDGTLTQPRQ 22 (175)
Q Consensus 9 i~~DlDGTLl~~~~ 22 (175)
||||-|+.|.++..
T Consensus 124 IAFDgDaVLfsDes 137 (264)
T PF06189_consen 124 IAFDGDAVLFSDES 137 (264)
T ss_pred EEEcCCeEeecCcc
Confidence 89999999998654
No 239
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=45.59 E-value=77 Score=25.06 Aligned_cols=81 Identities=19% Similarity=0.215 Sum_probs=48.2
Q ss_pred ecCCCccCCCCCCCHHHHHHHHHhhCCC--eEEEEEcCCCHHHHHHHhcCCCcccccceEEecCCceeeeCCeEeeccch
Q psy16481 12 DVDGTLTQPRQKAQNETLDFLLKKLKPL--SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLVAYKNGKLFEKKSI 89 (175)
Q Consensus 12 DlDGTLl~~~~~i~~~~~~~~l~~l~~~--i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~~NGa~i~~~~~~i~~~~l 89 (175)
+-||-.+.-..+=++...+- |+..++. ..+.+=||=.+..+..++..- +.+|- |..+..+|+. .+.+
T Consensus 177 ~aDaVI~tG~~TG~~~d~~e-l~~a~~~~~~pvlvGSGv~~eN~~~~l~~a------dG~Iv--gT~lK~~G~~--~n~V 245 (263)
T COG0434 177 LADAVIVTGSRTGSPPDLEE-LKLAKEAVDTPVLVGSGVNPENIEELLKIA------DGVIV--GTSLKKGGVT--WNPV 245 (263)
T ss_pred CCCEEEEecccCCCCCCHHH-HHHHHhccCCCEEEecCCCHHHHHHHHHHc------CceEE--EEEEccCCEe--cCcc
Confidence 34666655443333333444 5554443 778888888888887776542 23332 4445556654 3445
Q ss_pred hhhhCHHHHHHHHHHHHH
Q psy16481 90 IDHMGEDKIQTFINYCLQ 107 (175)
Q Consensus 90 ~~~l~~~~~~~i~~~~~~ 107 (175)
+.+.++++++.+++
T Consensus 246 ----D~~Rv~~~v~~a~~ 259 (263)
T COG0434 246 ----DLERVRRFVEAARR 259 (263)
T ss_pred ----CHHHHHHHHHHHHH
Confidence 88889998887764
No 240
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=44.05 E-value=37 Score=25.11 Aligned_cols=31 Identities=13% Similarity=0.295 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHH
Q psy16481 23 KAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVA 54 (175)
Q Consensus 23 ~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~ 54 (175)
.+-+...+. |++|+++ ++++++|..+.....
T Consensus 84 ~~~~g~~e~-L~~l~~~g~~~~i~Sn~~~~~~~ 115 (199)
T PRK09456 84 ALRPEVIAI-MHKLREQGHRVVVLSNTNRLHTT 115 (199)
T ss_pred ccCHHHHHH-HHHHHhCCCcEEEEcCCchhhHH
Confidence 356788898 9999998 999999998766544
No 241
>PRK10517 magnesium-transporting ATPase MgtA; Provisional
Probab=43.50 E-value=34 Score=32.12 Aligned_cols=40 Identities=20% Similarity=0.160 Sum_probs=35.2
Q ss_pred CCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCc
Q psy16481 22 QKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKV 62 (175)
Q Consensus 22 ~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~ 62 (175)
.++-++..++ |+++++. +++++.||-.........+++|+
T Consensus 549 Dp~R~~a~~a-I~~l~~aGI~v~miTGD~~~tA~~IA~~lGI 589 (902)
T PRK10517 549 DPPKETTAPA-LKALKASGVTVKILTGDSELVAAKVCHEVGL 589 (902)
T ss_pred CcchhhHHHH-HHHHHHCCCEEEEEcCCCHHHHHHHHHHcCC
Confidence 4677899999 9999999 99999999999998888877765
No 242
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=42.88 E-value=16 Score=28.18 Aligned_cols=29 Identities=17% Similarity=0.105 Sum_probs=19.3
Q ss_pred ceEEEEecCCCccCCC---CCCCHHHHHHHHHh
Q psy16481 6 NTICLFDVDGTLTQPR---QKAQNETLDFLLKK 35 (175)
Q Consensus 6 ~kli~~DlDGTLl~~~---~~i~~~~~~~~l~~ 35 (175)
+|.|.+|+.||..+-. ..+=|..++. +..
T Consensus 1 ~~~~l~diegt~~~isfv~~~lfpy~~~~-~~~ 32 (220)
T TIGR01691 1 IKNVLLDIEGTTGSISFVHDVLFPYAASR-LES 32 (220)
T ss_pred CCEEEEecCCCcccHHHHHhhhhHHHHHH-HHH
Confidence 4789999999998832 2444565655 544
No 243
>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.
Probab=41.55 E-value=32 Score=32.31 Aligned_cols=40 Identities=10% Similarity=0.194 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCc
Q psy16481 22 QKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKV 62 (175)
Q Consensus 22 ~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~ 62 (175)
.++-+++.++ |+++++. ++++++||.....+.......|+
T Consensus 536 Dplr~~v~e~-I~~l~~aGI~v~miTGD~~~tA~~ia~~~gi 576 (917)
T TIGR01116 536 DPPRPEVADA-IEKCRTAGIRVIMITGDNKETAEAICRRIGI 576 (917)
T ss_pred CCCchhHHHH-HHHHHHCCCEEEEecCCCHHHHHHHHHHcCC
Confidence 3578899999 9999999 99999999999888777766654
No 244
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=40.15 E-value=57 Score=26.45 Aligned_cols=48 Identities=13% Similarity=0.138 Sum_probs=28.7
Q ss_pred CCcceEEEEecCCCccC-----CCCCCCHHHHHHHHHhhCC------C-eEEEEEcCCCHHH
Q psy16481 3 CRANTICLFDVDGTLTQ-----PRQKAQNETLDFLLKKLKP------L-SHLAIVSGSDMNK 52 (175)
Q Consensus 3 ~~~~kli~~DlDGTLl~-----~~~~i~~~~~~~~l~~l~~------~-i~~~iaTGR~~~~ 52 (175)
+...|++++| ||.++. ....+.+...+. |+++.+ . +..+.+||-....
T Consensus 41 Stt~K~Vlld-~~~i~~~~~~~tg~~~~~~a~~~-l~~~l~~~g~~~~~v~~~~~TGyGr~~ 100 (293)
T TIGR03192 41 SVSSQAVLVC-DGELYGYNSMRTGNNSPDSAKNA-LQGIMDKIGMKLEDINYVVGTGYGRVN 100 (293)
T ss_pred chhEEEEEEe-CCEEEEEEeecCCCCHHHHHHHH-HHHHHHHcCCcccceEEEEEECcchhh
Confidence 4577999999 887753 222344444555 555422 2 6667788765443
No 245
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=38.95 E-value=34 Score=26.43 Aligned_cols=8 Identities=25% Similarity=0.746 Sum_probs=4.5
Q ss_pred eEEEEecC
Q psy16481 7 TICLFDVD 14 (175)
Q Consensus 7 kli~~DlD 14 (175)
.+++.|+|
T Consensus 161 ~li~~di~ 168 (233)
T cd04723 161 ELIVLDID 168 (233)
T ss_pred eEEEEEcC
Confidence 45666664
No 246
>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.
Probab=38.31 E-value=39 Score=31.82 Aligned_cols=40 Identities=5% Similarity=0.128 Sum_probs=35.1
Q ss_pred CCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCc
Q psy16481 22 QKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKV 62 (175)
Q Consensus 22 ~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~ 62 (175)
.++-+++.++ |+++++. ++++++||.....+.......|+
T Consensus 578 Dplr~~~~~a-I~~l~~aGI~v~miTGD~~~tA~~iA~~~GI 618 (941)
T TIGR01517 578 DPLRPGVREA-VQECQRAGITVRMVTGDNIDTAKAIARNCGI 618 (941)
T ss_pred CCCchhHHHH-HHHHHHCCCEEEEECCCChHHHHHHHHHcCC
Confidence 3678899999 9999999 99999999999998887777664
No 247
>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.
Probab=38.25 E-value=40 Score=32.29 Aligned_cols=39 Identities=10% Similarity=0.112 Sum_probs=34.3
Q ss_pred CCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCc
Q psy16481 23 KAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKV 62 (175)
Q Consensus 23 ~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~ 62 (175)
++-++..++ |+++++. ++++++||.....+.......|+
T Consensus 646 p~r~~v~~a-I~~l~~aGIkv~MiTGD~~~tA~~iA~~~Gi 685 (1053)
T TIGR01523 646 PPRNESAGA-VEKCHQAGINVHMLTGDFPETAKAIAQEVGI 685 (1053)
T ss_pred CCchhHHHH-HHHHHHCCCEEEEECCCCHHHHHHHHHHcCC
Confidence 577889999 9999999 99999999999998877777665
No 248
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=37.45 E-value=52 Score=23.22 Aligned_cols=43 Identities=26% Similarity=0.322 Sum_probs=35.8
Q ss_pred ccCCCCCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCC
Q psy16481 17 LTQPRQKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGE 60 (175)
Q Consensus 17 Ll~~~~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~ 60 (175)
+|-+...|-..+.+. +++..++ -.+.++.||....+.++..++
T Consensus 3 ILGsTGSIG~qtLdV-i~~~~d~f~v~~Lsa~~n~~~L~~q~~~f 46 (129)
T PF02670_consen 3 ILGSTGSIGTQTLDV-IRKHPDKFEVVALSAGSNIEKLAEQAREF 46 (129)
T ss_dssp EESTTSHHHHHHHHH-HHHCTTTEEEEEEEESSTHHHHHHHHHHH
T ss_pred EEcCCcHHHHHHHHH-HHhCCCceEEEEEEcCCCHHHHHHHHHHh
Confidence 456667788899998 9999999 777888899999998877664
No 249
>KOG3212|consensus
Probab=37.11 E-value=31 Score=26.07 Aligned_cols=14 Identities=29% Similarity=0.406 Sum_probs=11.7
Q ss_pred EEEEEcCCCHHHHH
Q psy16481 41 HLAIVSGSDMNKVA 54 (175)
Q Consensus 41 ~~~iaTGR~~~~~~ 54 (175)
++||||||+...+.
T Consensus 100 h~VIcSgrs~rhl~ 113 (208)
T KOG3212|consen 100 HTVICSGRSDRHLR 113 (208)
T ss_pred eEEEEecCchHHHH
Confidence 57899999998763
No 250
>KOG3189|consensus
Probab=36.97 E-value=41 Score=25.91 Aligned_cols=39 Identities=59% Similarity=1.189 Sum_probs=33.7
Q ss_pred hhccHHHHHHHHHHHHHhcCCCCCceeecceEEecCCcc
Q psy16481 134 DHMGEDKIQTFINYCLQHLSTVTLPFKRGNFIEFRTGLI 172 (175)
Q Consensus 134 ~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~~ii~~~Gv~ 172 (175)
.+.+++..+++++.+...+.++.+....|++|+...|+-
T Consensus 94 ~~LGee~~q~liNF~LrYlsdidlPiKRGtFiEFRNgMi 132 (252)
T KOG3189|consen 94 NHLGEEKLQELINFCLRYLSDIDLPIKRGTFIEFRNGMI 132 (252)
T ss_pred HHHhHHHHHHHHHHHHHHHHhcCCcccccceEEecCCce
Confidence 566888888999999999999999999999998877763
No 251
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=36.15 E-value=40 Score=29.07 Aligned_cols=31 Identities=29% Similarity=0.495 Sum_probs=23.4
Q ss_pred ceEE-EEecCCCccCCCCCCCHHHHHHHHHhhCC
Q psy16481 6 NTIC-LFDVDGTLTQPRQKAQNETLDFLLKKLKP 38 (175)
Q Consensus 6 ~kli-~~DlDGTLl~~~~~i~~~~~~~~l~~l~~ 38 (175)
-|+| ++|.|||+.+++. ++.+..+. |.++++
T Consensus 261 akVVavSD~~G~iy~~~G-ld~~~l~~-l~~~k~ 292 (454)
T PTZ00079 261 AKVLTMSDSDGYIHEPNG-FTKEKLAY-LMDLKN 292 (454)
T ss_pred CEEEEEEcCCCcEECCCC-CCHHHHHH-HHHHHh
Confidence 4788 9999999999875 77777766 555443
No 252
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=35.78 E-value=46 Score=26.51 Aligned_cols=36 Identities=14% Similarity=0.177 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcC
Q psy16481 23 KAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGG 59 (175)
Q Consensus 23 ~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~ 59 (175)
++-|...+. |+.|+++ +.++|+|+.+...+...+..
T Consensus 144 ~l~pGv~el-L~~L~~~g~~l~IvTn~~~~~~~~~l~~ 180 (286)
T PLN02779 144 PLRPGVLRL-MDEALAAGIKVAVCSTSNEKAVSKIVNT 180 (286)
T ss_pred CchhhHHHH-HHHHHHCCCeEEEEeCCCHHHHHHHHHH
Confidence 456788888 9999998 99999999988877665543
No 253
>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.
Probab=35.46 E-value=47 Score=31.07 Aligned_cols=40 Identities=10% Similarity=0.092 Sum_probs=35.2
Q ss_pred CCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCc
Q psy16481 22 QKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKV 62 (175)
Q Consensus 22 ~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~ 62 (175)
.++-++..++ |+++++. +++++.||-.........+..|+
T Consensus 514 Dp~R~~~~~a-I~~l~~aGI~vvmiTGD~~~tA~aIA~~lGI 554 (867)
T TIGR01524 514 DPPKESTKEA-IAALFKNGINVKVLTGDNEIVTARICQEVGI 554 (867)
T ss_pred CCCchhHHHH-HHHHHHCCCEEEEEcCCCHHHHHHHHHHcCC
Confidence 4678899999 9999999 99999999999988877777765
No 254
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=35.32 E-value=54 Score=31.43 Aligned_cols=47 Identities=21% Similarity=0.292 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCcc-cccceEEe
Q psy16481 24 AQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKVL-EQFDFVFP 71 (175)
Q Consensus 24 i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~~-~~~~~~i~ 71 (175)
+-+...+. |+.|+++ ++++|+|+.....+...++..++. ..++.+++
T Consensus 162 ~~pG~~el-L~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~Fd~iv~ 210 (1057)
T PLN02919 162 GFPGALEL-ITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFDAIVS 210 (1057)
T ss_pred cCccHHHH-HHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHCCEEEE
Confidence 45677888 9999999 999999999988887777766543 23455554
No 255
>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.
Probab=34.98 E-value=63 Score=27.88 Aligned_cols=54 Identities=7% Similarity=0.108 Sum_probs=40.6
Q ss_pred ceEEEEecCCCccC---CCCCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCC
Q psy16481 6 NTICLFDVDGTLTQ---PRQKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGE 60 (175)
Q Consensus 6 ~kli~~DlDGTLl~---~~~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~ 60 (175)
.+.+++=.|++++. -...+-+...++ +++|++. +.++++||............+
T Consensus 327 ~~~~~~a~~~~~~g~i~l~d~lr~~~~~~-i~~l~~~gi~~~~ltGD~~~~a~~ia~~l 384 (499)
T TIGR01494 327 LRVLAVASKETLLGLLGLEDPLRDDAKET-ISELREAGIRVIMLTGDNVLTAKAIAKEL 384 (499)
T ss_pred CEEEEEEECCeEEEEEEecCCCchhHHHH-HHHHHHCCCeEEEEcCCCHHHHHHHHHHc
Confidence 34455556776654 334677888898 9999988 999999999999887766664
No 256
>cd07018 S49_SppA_67K_type Signal peptide peptidase A (SppA) 67K type, a serine protease, has catalytic Ser-Lys dyad. Signal peptide peptidase A (SppA; Peptidase S49; Protease IV) 67K type: SppA is found in all three domains of life and is involved in the cleavage of signal peptides after their removal from the precursor proteins by signal peptidases. Members in this subfamily contain an amino-terminal domain in addition to the carboxyl-terminal protease domain that is conserved in all the S49 family members (sometimes referred to as 67K type), similar to E. coli and Arabidopsis thaliana SppA peptidases. Unlike the eukaryotic functional homologs that are proposed to be aspartic proteases, site-directed mutagenesis and sequence analysis have shown that members in this subfamily, mostly bacterial, are serine proteases. The predicted active site serine for members in this family occurs in a transmembrane domain. Mutagenesis studies also suggest that the catalytic center comprises a Ser-Lys
Probab=34.54 E-value=82 Score=24.05 Aligned_cols=42 Identities=14% Similarity=0.235 Sum_probs=27.4
Q ss_pred EEEecCCCccCCCCCCC--------------HHHHHHHHHhhCCC--eEEEEEcCCCHH
Q psy16481 9 CLFDVDGTLTQPRQKAQ--------------NETLDFLLKKLKPL--SHLAIVSGSDMN 51 (175)
Q Consensus 9 i~~DlDGTLl~~~~~i~--------------~~~~~~~l~~l~~~--i~~~iaTGR~~~ 51 (175)
+.+|++|++.+.....+ .+..++ |+++.+. ++.++..+.++.
T Consensus 1 l~i~l~g~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~-l~~a~~d~~ik~vvL~~~s~g 58 (222)
T cd07018 1 LVLDLSGSLVEQPPPSPPLLLGGGESSELSLRDLLEA-LEKAAEDDRIKGIVLDLDGLS 58 (222)
T ss_pred CEEcCCCcccccCCCCChhhhccCCcCCccHHHHHHH-HHHHhcCCCeEEEEEECCCCC
Confidence 35799999976544322 455666 8887764 777777655443
No 257
>TIGR00090 iojap_ybeB iojap-like ribosome-associated protein. This model describes a widely distributed family of bacterial proteins related to iojap from plants. It includes YbeB from E. coli. The gene iojap is a pattern-striping gene in maize, reflecting a chloroplast development defect in some cells. More recent work in bacteria suggests that the bacterial iojap-related protein physically associates with ribosomes. The function remains unknown.
Probab=34.50 E-value=40 Score=22.47 Aligned_cols=15 Identities=27% Similarity=0.397 Sum_probs=11.9
Q ss_pred eEEEEEcCCCHHHHH
Q psy16481 40 SHLAIVSGSDMNKVA 54 (175)
Q Consensus 40 i~~~iaTGR~~~~~~ 54 (175)
=.|+||||++...+.
T Consensus 30 dy~VI~Tg~S~rh~~ 44 (99)
T TIGR00090 30 DYFVIASGTSSRHVK 44 (99)
T ss_pred CEEEEEEeCCHHHHH
Confidence 368999999988753
No 258
>PHA01735 hypothetical protein
Probab=34.40 E-value=44 Score=20.91 Aligned_cols=36 Identities=19% Similarity=0.064 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCC
Q psy16481 24 AQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGE 60 (175)
Q Consensus 24 i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~ 60 (175)
-+...+.| ++.|+.+ |.=+.+.|.+...+...++.+
T Consensus 31 TtaDL~AA-~d~Lk~NdItgv~~~gspl~~La~~~P~l 67 (76)
T PHA01735 31 TTADLRAA-CDWLKSNDITGVAVDGSPLAKLAGLMPQL 67 (76)
T ss_pred cHHHHHHH-HHHHHHCCCceeeCCCCHHHHHHhcCccC
Confidence 34455667 8888888 888889999988887766553
No 259
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=33.98 E-value=44 Score=25.82 Aligned_cols=47 Identities=19% Similarity=0.342 Sum_probs=27.8
Q ss_pred ceEEEEecCCCccCCCCCCCHHHHHHHHHhhCCC-eEEEEEcC--CCHHHHHHHhc
Q psy16481 6 NTICLFDVDGTLTQPRQKAQNETLDFLLKKLKPL-SHLAIVSG--SDMNKVAEQLG 58 (175)
Q Consensus 6 ~kli~~DlDGTLl~~~~~i~~~~~~~~l~~l~~~-i~~~iaTG--R~~~~~~~~~~ 58 (175)
..+++.|+|||+-... .+.+. ++++.+. -.-+.++| |+...+..++.
T Consensus 44 ~~l~ivDldga~~g~~-----~n~~~-i~~i~~~~~~pv~~gGGIrs~edv~~l~~ 93 (228)
T PRK04128 44 DKIHVVDLDGAFEGKP-----KNLDV-VKNIIRETGLKVQVGGGLRTYESIKDAYE 93 (228)
T ss_pred CEEEEEECcchhcCCc-----chHHH-HHHHHhhCCCCEEEcCCCCCHHHHHHHHH
Confidence 3578899999995432 23555 6666665 23344444 44556655543
No 260
>KOG2832|consensus
Probab=33.91 E-value=1.2e+02 Score=25.58 Aligned_cols=54 Identities=15% Similarity=0.236 Sum_probs=39.9
Q ss_pred ceEEEEecCCCccCCCCC--------CCHHHHHHHHHhhCCCeEEEEEcCCCHHHHHHHhcCC
Q psy16481 6 NTICLFDVDGTLTQPRQK--------AQNETLDFLLKKLKPLSHLAIVSGSDMNKVAEQLGGE 60 (175)
Q Consensus 6 ~kli~~DlDGTLl~~~~~--------i~~~~~~~~l~~l~~~i~~~iaTGR~~~~~~~~~~~~ 60 (175)
.--+++||-++|+.++.+ --|. .+.+|.++.....+|+.|+-+-....+++..+
T Consensus 189 ~yTLVleledvLVhpdws~~tGwRf~kRPg-vD~FL~~~a~~yEIVi~sse~gmt~~pl~d~l 250 (393)
T KOG2832|consen 189 PYTLVLELEDVLVHPDWSYKTGWRFKKRPG-VDYFLGHLAKYYEIVVYSSEQGMTVFPLLDAL 250 (393)
T ss_pred CceEEEEeeeeEeccchhhhcCceeccCch-HHHHHHhhcccceEEEEecCCccchhhhHhhc
Confidence 345889999999998765 3344 34447777744999999998877777666654
No 261
>PRK04081 hypothetical protein; Provisional
Probab=33.43 E-value=73 Score=24.27 Aligned_cols=31 Identities=29% Similarity=0.464 Sum_probs=23.9
Q ss_pred CCCCcceEEEEecCCCccCCCCCCCHHHHHHHHHh
Q psy16481 1 MTCRANTICLFDVDGTLTQPRQKAQNETLDFLLKK 35 (175)
Q Consensus 1 ~~~~~~kli~~DlDGTLl~~~~~i~~~~~~~~l~~ 35 (175)
||+.+.++|+=|+||| ++.++++-.++++++
T Consensus 67 ~Ps~~Trvilr~~dG~----ER~LS~eE~dkLi~e 97 (207)
T PRK04081 67 YPSSETRVVLRDLDGT----ERVLSQEEIDKLIKE 97 (207)
T ss_pred cCCCcceEEEecCCCc----ccccCHHHHHHHHHH
Confidence 4677889999999994 567888877774544
No 262
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=33.30 E-value=94 Score=25.06 Aligned_cols=40 Identities=23% Similarity=0.316 Sum_probs=21.7
Q ss_pred eEEecCCceeeeCCeEeeccchhhhhCHHHHHHHHHHHHHhc
Q psy16481 68 FVFPENGLVAYKNGKLFEKKSIIDHMGEDKIQTFINYCLQHL 109 (175)
Q Consensus 68 ~~i~~NGa~i~~~~~~i~~~~l~~~l~~~~~~~i~~~~~~~~ 109 (175)
..|++=||.|--.|..+.++++.+.+|+. ++.- ++..+++
T Consensus 220 i~iAEP~AlIGFAGpRVIEQTire~LPeg-fQ~a-EfLlehG 259 (294)
T COG0777 220 IIIAEPGALIGFAGPRVIEQTIREKLPEG-FQTA-EFLLEHG 259 (294)
T ss_pred eeecCcccccccCcchhhhhhhcccCCcc-hhhH-HHHHHcC
Confidence 45666677665556555566664444443 3443 5555554
No 263
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=32.66 E-value=92 Score=20.88 Aligned_cols=30 Identities=17% Similarity=0.205 Sum_probs=20.2
Q ss_pred CHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHH
Q psy16481 25 QNETLDFLLKKLKPL-SHLAIVSGSDMNKVAE 55 (175)
Q Consensus 25 ~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~ 55 (175)
+++..++ ++.++++ ++++..|++.-..+.+
T Consensus 73 ~~~~~~~-~~~a~~~g~~iv~iT~~~~~~l~~ 103 (139)
T cd05013 73 TKETVEA-AEIAKERGAKVIAITDSANSPLAK 103 (139)
T ss_pred CHHHHHH-HHHHHHcCCeEEEEcCCCCChhHH
Confidence 4566677 7777777 7777777776555543
No 264
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=32.61 E-value=51 Score=22.19 Aligned_cols=33 Identities=15% Similarity=0.141 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHH
Q psy16481 23 KAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQ 56 (175)
Q Consensus 23 ~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~ 56 (175)
.-++++.++ ++.++++ .+++..|+.+-..+.+.
T Consensus 57 G~t~e~~~~-~~~a~~~g~~vi~iT~~~~s~la~~ 90 (126)
T cd05008 57 GETADTLAA-LRLAKEKGAKTVAITNVVGSTLARE 90 (126)
T ss_pred cCCHHHHHH-HHHHHHcCCeEEEEECCCCChHHHh
Confidence 346778888 9999998 89999999877666543
No 265
>PRK11538 ribosome-associated protein; Provisional
Probab=32.36 E-value=40 Score=22.84 Aligned_cols=14 Identities=21% Similarity=0.406 Sum_probs=11.6
Q ss_pred EEEEEcCCCHHHHH
Q psy16481 41 HLAIVSGSDMNKVA 54 (175)
Q Consensus 41 ~~~iaTGR~~~~~~ 54 (175)
.|+||||++...+.
T Consensus 36 y~VIatg~S~rh~~ 49 (105)
T PRK11538 36 CMIICTGTSSRHVM 49 (105)
T ss_pred EEEEEEeCCHHHHH
Confidence 58999999998764
No 266
>COG1591 Holliday junction resolvase - archaeal type [DNA replication, recombination, and repair]
Probab=32.11 E-value=75 Score=22.68 Aligned_cols=62 Identities=11% Similarity=0.136 Sum_probs=39.9
Q ss_pred HHHHHHhhCCC---eEEEEEcCCCHHHHHHHhcCCCcccccceEEecCCceeee------CCeEeeccchhhhhCHHHHH
Q psy16481 29 LDFLLKKLKPL---SHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLVAYK------NGKLFEKKSIIDHMGEDKIQ 99 (175)
Q Consensus 29 ~~~~l~~l~~~---i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~~NGa~i~~------~~~~i~~~~l~~~l~~~~~~ 99 (175)
++. ++.|.+. +.-+.+||-+. .+ + ..+|+.||+.+.. .+..+| ++.++++
T Consensus 11 ReL-v~~L~e~GfAvvR~paSG~sk-------~p--~----pDivA~~g~~~l~iE~K~~~~~kiY-------l~~e~ve 69 (137)
T COG1591 11 REL-VRILWERGFAVVRAPASGGSK-------RP--L----PDIVAGNGGVYLAIEVKSRRETKIY-------LDKEQVE 69 (137)
T ss_pred HHH-HHHHHhcCceEEEcccCCCCC-------CC--C----CCEEecCCCEEEEEEEEeccCCcEE-------EcHHHHH
Confidence 455 7777777 34445588211 11 1 1478889998762 233344 2889999
Q ss_pred HHHHHHHHhccc
Q psy16481 100 TFINYCLQHLST 111 (175)
Q Consensus 100 ~i~~~~~~~~~~ 111 (175)
.++++++..+..
T Consensus 70 ~L~~FA~~fGg~ 81 (137)
T COG1591 70 KLVEFARRFGGE 81 (137)
T ss_pred HHHHHHHHcCCc
Confidence 999999988754
No 267
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=31.88 E-value=1.2e+02 Score=23.05 Aligned_cols=48 Identities=13% Similarity=0.193 Sum_probs=33.4
Q ss_pred EEEEe-cCCCccCCCCCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHh
Q psy16481 8 ICLFD-VDGTLTQPRQKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQL 57 (175)
Q Consensus 8 li~~D-lDGTLl~~~~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~ 57 (175)
.+=+| |||+++++ -.+.+...++ |++.... ..+=+.+-++...+..+.
T Consensus 28 ~lHiDiMDg~fvpn-~~~g~~~i~~-i~~~~~~~~DvHLMv~~P~~~i~~~~ 77 (201)
T PF00834_consen 28 WLHIDIMDGHFVPN-LTFGPDIIKA-IRKITDLPLDVHLMVENPERYIEEFA 77 (201)
T ss_dssp EEEEEEEBSSSSSS-B-B-HHHHHH-HHTTSSSEEEEEEESSSGGGHHHHHH
T ss_pred EEEEeecccccCCc-ccCCHHHHHH-HhhcCCCcEEEEeeeccHHHHHHHHH
Confidence 34445 79999987 4699999999 9999776 666666667776665443
No 268
>PRK12358 putative 6-phosphogluconolactonase; Provisional
Probab=31.73 E-value=35 Score=26.49 Aligned_cols=37 Identities=24% Similarity=0.226 Sum_probs=27.6
Q ss_pred CCCCHHHHHHHHHhhCCC--eEEEEEcCCCHHHHHHHhc
Q psy16481 22 QKAQNETLDFLLKKLKPL--SHLAIVSGSDMNKVAEQLG 58 (175)
Q Consensus 22 ~~i~~~~~~~~l~~l~~~--i~~~iaTGR~~~~~~~~~~ 58 (175)
..++....+.+++.+.++ ..+++++|+++..+.+.+.
T Consensus 10 ~e~~~~~a~~i~~~i~~~~~~~l~lsgG~tp~~~y~~L~ 48 (239)
T PRK12358 10 EEMSRVAAHHLLGYMSKTKRVNLAITAGSTPKGMYEYLI 48 (239)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEECCCCCHHHHHHHHH
Confidence 456666666656667666 8999999999998766654
No 269
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=31.62 E-value=65 Score=25.36 Aligned_cols=39 Identities=33% Similarity=0.547 Sum_probs=20.2
Q ss_pred EEEEe--cCCCccCCCCCCCHHHHHHHHHhhCCC-eEEEEEcCC--CHHHHH
Q psy16481 8 ICLFD--VDGTLTQPRQKAQNETLDFLLKKLKPL-SHLAIVSGS--DMNKVA 54 (175)
Q Consensus 8 li~~D--lDGTLl~~~~~i~~~~~~~~l~~l~~~-i~~~iaTGR--~~~~~~ 54 (175)
+|++| -||||--.+ .+. .+++.+. -.-++|||- +...+.
T Consensus 164 ii~TdI~~DGtl~G~n-------~~l-~~~l~~~~~ipviaSGGv~s~~Di~ 207 (241)
T COG0106 164 ILYTDISRDGTLSGPN-------VDL-VKELAEAVDIPVIASGGVSSLDDIK 207 (241)
T ss_pred EEEEecccccccCCCC-------HHH-HHHHHHHhCcCEEEecCcCCHHHHH
Confidence 44444 478885544 344 5555555 344566663 344443
No 270
>PRK13402 gamma-glutamyl kinase; Provisional
Probab=31.53 E-value=93 Score=26.04 Aligned_cols=47 Identities=21% Similarity=0.186 Sum_probs=33.4
Q ss_pred CCCcceEEEEecCCCccCC-CCCCCHHHHHHH---HHhhCCC-eEEEEEcCC
Q psy16481 2 TCRANTICLFDVDGTLTQP-RQKAQNETLDFL---LKKLKPL-SHLAIVSGS 48 (175)
Q Consensus 2 ~~~~~kli~~DlDGTLl~~-~~~i~~~~~~~~---l~~l~~~-i~~~iaTGR 48 (175)
++...|.|+.=+=|+.|.+ +..++++..+.+ |.+|+++ .+++++||-
T Consensus 1 ~~~~~kriVIKiGgs~L~~~~~~l~~~~i~~la~~I~~l~~~G~~vvlVsSG 52 (368)
T PRK13402 1 SDSNWKRIVVKVGSSLLTPHHQGCSSHYLLGLVQQIVYLKDQGHQVVLVSSG 52 (368)
T ss_pred CCCCCcEEEEEEchhhccCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4566788889998987765 357887766631 6667777 887777763
No 271
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=31.46 E-value=80 Score=24.46 Aligned_cols=43 Identities=19% Similarity=0.314 Sum_probs=21.5
Q ss_pred eEEEEec--CCCccCCCCCCCHHHHHHHHHhhCCC-eEEEEEcC--CCHHHHHHHh
Q psy16481 7 TICLFDV--DGTLTQPRQKAQNETLDFLLKKLKPL-SHLAIVSG--SDMNKVAEQL 57 (175)
Q Consensus 7 kli~~Dl--DGTLl~~~~~i~~~~~~~~l~~l~~~-i~~~iaTG--R~~~~~~~~~ 57 (175)
.+|.+|+ |||+-- ++ .+. ++++.+. -.-++++| |+...+...+
T Consensus 164 ~ii~tdi~~dGt~~G----~~---~~l-i~~l~~~~~ipvi~~GGi~s~edi~~l~ 211 (234)
T PRK13587 164 GIIYTDIAKDGKMSG----PN---FEL-TGQLVKATTIPVIASGGIRHQQDIQRLA 211 (234)
T ss_pred EEEEecccCcCCCCc----cC---HHH-HHHHHHhCCCCEEEeCCCCCHHHHHHHH
Confidence 4566666 566632 22 233 4444443 23455556 5666666555
No 272
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=31.01 E-value=1e+02 Score=23.99 Aligned_cols=29 Identities=17% Similarity=0.354 Sum_probs=14.9
Q ss_pred HHHHHHhhCCC-eEEEEEcC--CCHHHHHHHhc
Q psy16481 29 LDFLLKKLKPL-SHLAIVSG--SDMNKVAEQLG 58 (175)
Q Consensus 29 ~~~~l~~l~~~-i~~~iaTG--R~~~~~~~~~~ 58 (175)
.+. ++++.+. -.-++|+| ++...+...++
T Consensus 186 ~~~-i~~~~~~~~ipvia~GGv~s~~d~~~~~~ 217 (253)
T PRK02083 186 LEL-TRAVSDAVNVPVIASGGAGNLEHFVEAFT 217 (253)
T ss_pred HHH-HHHHHhhCCCCEEEECCCCCHHHHHHHHH
Confidence 344 5555554 33456666 44555555443
No 273
>PF07302 AroM: AroM protein; InterPro: IPR010843 This family consists of several bacterial and archaeal AroM proteins. In Escherichia coli the aroM gene is cotranscribed with aroL []. The function of this family is unknown.
Probab=30.70 E-value=19 Score=27.91 Aligned_cols=43 Identities=16% Similarity=0.155 Sum_probs=31.0
Q ss_pred eEEEEecCCCccC-CCCCCCHHHHHHHHHhhCCC---eEEEEEcCCCH
Q psy16481 7 TICLFDVDGTLTQ-PRQKAQNETLDFLLKKLKPL---SHLAIVSGSDM 50 (175)
Q Consensus 7 kli~~DlDGTLl~-~~~~i~~~~~~~~l~~l~~~---i~~~iaTGR~~ 50 (175)
-|+-.--|||.+. +.+.+.+...+. |.+|.++ ..+.+|||.-.
T Consensus 54 vLvTrL~DG~~V~ls~~~v~~~lq~~-i~~le~~G~d~illlCTG~F~ 100 (221)
T PF07302_consen 54 VLVTRLRDGTQVVLSKKKVEPRLQAC-IAQLEAQGYDVILLLCTGEFP 100 (221)
T ss_pred eeEEEeCCCCEEEEEHHHHHHHHHHH-HHHHHHCCCCEEEEeccCCCC
Confidence 4455556888766 444777777777 8888775 88999999843
No 274
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=29.21 E-value=34 Score=24.29 Aligned_cols=30 Identities=17% Similarity=0.259 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHHHhhCCC-eE------------EEEEcCCCHH
Q psy16481 22 QKAQNETLDFLLKKLKPL-SH------------LAIVSGSDMN 51 (175)
Q Consensus 22 ~~i~~~~~~~~l~~l~~~-i~------------~~iaTGR~~~ 51 (175)
+..++++..|+|+.+.++ +. +|+||+++..
T Consensus 72 NrappktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e 114 (131)
T PF07726_consen 72 NRAPPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVE 114 (131)
T ss_dssp GGS-HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT-
T ss_pred ccCCHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccc
Confidence 578999999978888887 53 6777877754
No 275
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=28.95 E-value=1.4e+02 Score=23.52 Aligned_cols=43 Identities=28% Similarity=0.363 Sum_probs=31.8
Q ss_pred cceEEEEecCCCccCCCCC--CCHHHHHHH---HHhhCCC-eEEEEEcC
Q psy16481 5 ANTICLFDVDGTLTQPRQK--AQNETLDFL---LKKLKPL-SHLAIVSG 47 (175)
Q Consensus 5 ~~kli~~DlDGTLl~~~~~--i~~~~~~~~---l~~l~~~-i~~~iaTG 47 (175)
.++-|.+.+=|-.|..+.. |+++..+.+ |+++.+. +++.++.|
T Consensus 4 ~~~rillkLsGe~l~g~~~~gid~~~i~~~a~~i~~~~~~g~eV~iVvG 52 (238)
T COG0528 4 KYMRILLKLSGEALAGEQGFGIDPEVLDRIANEIKELVDLGVEVAVVVG 52 (238)
T ss_pred ceEEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEEC
Confidence 5688999999999998654 887776653 5666666 77766665
No 276
>PTZ00489 glutamate 5-kinase; Provisional
Probab=28.62 E-value=1.2e+02 Score=24.03 Aligned_cols=14 Identities=36% Similarity=0.534 Sum_probs=10.8
Q ss_pred eEEEEecCCCccCC
Q psy16481 7 TICLFDVDGTLTQP 20 (175)
Q Consensus 7 kli~~DlDGTLl~~ 20 (175)
=++++|.||-+.++
T Consensus 165 LiilTDVdGVy~~d 178 (264)
T PTZ00489 165 LVILSDIDGYYTEN 178 (264)
T ss_pred EEEeeccCeeEcCC
Confidence 45689999988753
No 277
>PF08620 RPAP1_C: RPAP1-like, C-terminal; InterPro: IPR013929 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the C-terminal region that contains the motif GLHHH. This region is conserved from yeast to humans.
Probab=28.32 E-value=30 Score=21.90 Aligned_cols=8 Identities=63% Similarity=1.095 Sum_probs=7.3
Q ss_pred EecCCCcc
Q psy16481 11 FDVDGTLT 18 (175)
Q Consensus 11 ~DlDGTLl 18 (175)
||++|.++
T Consensus 5 Fdf~G~l~ 12 (73)
T PF08620_consen 5 FDFDGNLL 12 (73)
T ss_pred ccCCCCEe
Confidence 89999999
No 278
>PF12965 DUF3854: Domain of unknown function (DUF3854); InterPro: IPR024385 This is a family of uncharacterised proteins, found by clustering human gut metagenomic sequences [].
Probab=28.08 E-value=44 Score=23.54 Aligned_cols=7 Identities=43% Similarity=0.643 Sum_probs=4.8
Q ss_pred EEEEecC
Q psy16481 8 ICLFDVD 14 (175)
Q Consensus 8 li~~DlD 14 (175)
.|+||.|
T Consensus 72 ~iaFD~D 78 (130)
T PF12965_consen 72 YIAFDAD 78 (130)
T ss_pred EEEecCC
Confidence 4677776
No 279
>PRK06557 L-ribulose-5-phosphate 4-epimerase; Validated
Probab=27.50 E-value=87 Score=23.89 Aligned_cols=52 Identities=13% Similarity=0.181 Sum_probs=31.2
Q ss_pred cceEEEEecCCCccCCCCCCCHHHHHHHHHhhCCC--eEEEEEcCCCHHHHHHHh
Q psy16481 5 ANTICLFDVDGTLTQPRQKAQNETLDFLLKKLKPL--SHLAIVSGSDMNKVAEQL 57 (175)
Q Consensus 5 ~~kli~~DlDGTLl~~~~~i~~~~~~~~l~~l~~~--i~~~iaTGR~~~~~~~~~ 57 (175)
.-.++.+|+||+++....+.|.++.-= ..-.+.+ +..++=|=-++......+
T Consensus 59 ~~div~vd~~G~~~~g~~~ps~E~~lH-~~iy~~~pdv~aVvH~H~~~~~a~a~~ 112 (221)
T PRK06557 59 PEDMVVVDLDGNVVEGDLKPSSDTASH-LYVYRHMPDVGGVVHTHSTYATAWAAR 112 (221)
T ss_pred HHHEEEEcCCCCCcCCCCCCCccHHHH-HHHHHhCCCCCEEEeeCcHHHHHHHHh
Confidence 346899999999998755666554321 2222333 777777666555544333
No 280
>PF06901 FrpC: RTX iron-regulated protein FrpC; InterPro: IPR010692 This family consists of several RTX iron-regulated FrpC proteins which appear to be found exclusively in Neisseria meningitidis. FrpC has been shown to be related to the RTX family of bacterial cytotoxins. FrpC is found in the meningococcal outer membrane. The function of this family is unknown although it is thought to be a virulence factor [].
Probab=27.32 E-value=35 Score=26.03 Aligned_cols=13 Identities=31% Similarity=0.396 Sum_probs=11.2
Q ss_pred eEEEEecCCCccC
Q psy16481 7 TICLFDVDGTLTQ 19 (175)
Q Consensus 7 kli~~DlDGTLl~ 19 (175)
+-|-||+|||++.
T Consensus 59 ~~v~~D~~GT~m~ 71 (271)
T PF06901_consen 59 HTVTFDFQGTKMV 71 (271)
T ss_pred eeEEEeccceEEE
Confidence 5688999999976
No 281
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=26.71 E-value=68 Score=28.73 Aligned_cols=39 Identities=15% Similarity=0.371 Sum_probs=27.6
Q ss_pred eEEEEecCCCccC--CCCCCCHHHHHHHHHhhCCC-eEEEEEcCC
Q psy16481 7 TICLFDVDGTLTQ--PRQKAQNETLDFLLKKLKPL-SHLAIVSGS 48 (175)
Q Consensus 7 kli~~DlDGTLl~--~~~~i~~~~~~~~l~~l~~~-i~~~iaTGR 48 (175)
-+-++|+||-++. +.+.++..- . ++...+- ..+++||-=
T Consensus 256 giAvldldGevl~~~S~r~~~~~e--V-ve~I~~lG~PvvVAtDV 297 (652)
T COG2433 256 GIAVLDLDGEVLDLESRRGIDRSE--V-VEFISELGKPVVVATDV 297 (652)
T ss_pred eEEEEecCCcEEeeeccccCCHHH--H-HHHHHHcCCceEEEccC
Confidence 4678999999988 556787663 3 4445554 688888854
No 282
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=26.55 E-value=70 Score=21.70 Aligned_cols=32 Identities=16% Similarity=0.100 Sum_probs=25.2
Q ss_pred CCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHH
Q psy16481 23 KAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAE 55 (175)
Q Consensus 23 ~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~ 55 (175)
.-++++.++ ++.++++ .+++..|+..-..+.+
T Consensus 58 G~t~~~~~~-~~~a~~~g~~vi~iT~~~~s~la~ 90 (120)
T cd05710 58 GNTKETVAA-AKFAKEKGATVIGLTDDEDSPLAK 90 (120)
T ss_pred CCChHHHHH-HHHHHHcCCeEEEEECCCCCcHHH
Confidence 346788888 9999998 8888888887766654
No 283
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=26.53 E-value=1e+02 Score=25.87 Aligned_cols=44 Identities=20% Similarity=0.298 Sum_probs=38.1
Q ss_pred CccCCCCCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCC
Q psy16481 16 TLTQPRQKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGE 60 (175)
Q Consensus 16 TLl~~~~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~ 60 (175)
|+|-+.++|-..+.+. +++..++ -.+.++.||....+.++...+
T Consensus 5 ~iLGSTGSIG~qtLdV-i~~~p~~f~vval~ag~n~~~l~~q~~~f 49 (385)
T COG0743 5 TILGSTGSIGTQTLDV-IRRNPDKFEVVALAAGKNVELLAEQIREF 49 (385)
T ss_pred EEEecCCchhHHHHHH-HHhCCCcEEEEEEecCCcHHHHHHHHHHh
Confidence 5677888999999999 9999999 889999999999887776654
No 284
>PF12611 DUF3766: Protein of unknown function (DUF3766); InterPro: IPR013367 Proteins in this entry are encoded in a subset of bacterial flagellar operons, generally between genes designated flgD and flgE, in species as diverse as Bacillus halodurans and various other Firmicutes, Geobacter sulfurreducens, and Bdellovibrio bacteriovorus. The specific molecular function of this protein is unknown.
Probab=26.27 E-value=34 Score=16.78 Aligned_cols=11 Identities=9% Similarity=0.280 Sum_probs=8.5
Q ss_pred EEEEecCCCcc
Q psy16481 8 ICLFDVDGTLT 18 (175)
Q Consensus 8 li~~DlDGTLl 18 (175)
=||..+||+.+
T Consensus 14 nvFTNIDsaVi 24 (24)
T PF12611_consen 14 NVFTNIDSAVI 24 (24)
T ss_pred CceeccccccC
Confidence 47889999863
No 285
>KOG0207|consensus
Probab=26.03 E-value=1.8e+02 Score=27.58 Aligned_cols=57 Identities=12% Similarity=0.228 Sum_probs=46.3
Q ss_pred CcceEEEEecCCCccC---CCCCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCC
Q psy16481 4 RANTICLFDVDGTLTQ---PRQKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEK 61 (175)
Q Consensus 4 ~~~kli~~DlDGTLl~---~~~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~ 61 (175)
+....+.+=+||+|.. -..++-++...+ +..|+.. +++++.||-....+....+..|
T Consensus 701 ~g~tvv~v~vn~~l~gv~~l~D~vr~~a~~a-v~~Lk~~Gi~v~mLTGDn~~aA~svA~~VG 761 (951)
T KOG0207|consen 701 KGQTVVYVAVNGQLVGVFALEDQVRPDAALA-VAELKSMGIKVVMLTGDNDAAARSVAQQVG 761 (951)
T ss_pred cCceEEEEEECCEEEEEEEeccccchhHHHH-HHHHHhcCceEEEEcCCCHHHHHHHHHhhC
Confidence 3556788889999966 345688888899 9999999 9999999999998877666653
No 286
>COG0799 Uncharacterized homolog of plant Iojap protein [Function unknown]
Probab=25.96 E-value=69 Score=22.17 Aligned_cols=13 Identities=23% Similarity=0.422 Sum_probs=11.2
Q ss_pred EEEEEcCCCHHHH
Q psy16481 41 HLAIVSGSDMNKV 53 (175)
Q Consensus 41 ~~~iaTGR~~~~~ 53 (175)
.|+||||++...+
T Consensus 36 yfVIatg~s~rhv 48 (115)
T COG0799 36 YFVIATGNSSRHV 48 (115)
T ss_pred EEEEEEeCchHHH
Confidence 5899999998875
No 287
>PRK15122 magnesium-transporting ATPase; Provisional
Probab=25.85 E-value=77 Score=29.83 Aligned_cols=40 Identities=8% Similarity=0.089 Sum_probs=35.3
Q ss_pred CCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcCCCc
Q psy16481 22 QKAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGGEKV 62 (175)
Q Consensus 22 ~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~~~~ 62 (175)
.++-++..++ |+++++. +++++.||-.........+.+|+
T Consensus 549 Dp~R~~a~~a-I~~l~~aGI~v~miTGD~~~tA~aIA~~lGI 589 (903)
T PRK15122 549 DPPKESAAPA-IAALRENGVAVKVLTGDNPIVTAKICREVGL 589 (903)
T ss_pred CccHHHHHHH-HHHHHHCCCeEEEECCCCHHHHHHHHHHcCC
Confidence 4678899999 9999999 99999999999998887777765
No 288
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=25.78 E-value=1.2e+02 Score=23.20 Aligned_cols=41 Identities=24% Similarity=0.491 Sum_probs=19.2
Q ss_pred eEEEEecC--CCccCCCCCCCHHHHHHHHHhhCCC-eEEEEEcC--CCHHHHHH
Q psy16481 7 TICLFDVD--GTLTQPRQKAQNETLDFLLKKLKPL-SHLAIVSG--SDMNKVAE 55 (175)
Q Consensus 7 kli~~DlD--GTLl~~~~~i~~~~~~~~l~~l~~~-i~~~iaTG--R~~~~~~~ 55 (175)
.+|++|+| ||+-. ++ .+. ++++.+. -.-++|+| |+...+..
T Consensus 156 ~ii~tdI~~dGt~~G----~d---~el-i~~i~~~~~~pvia~GGi~s~ed~~~ 201 (221)
T TIGR00734 156 GLIVLDIHSVGTMKG----PN---LEL-LTKTLELSEHPVMLGGGISGVEDLEL 201 (221)
T ss_pred EEEEEECCccccCCC----CC---HHH-HHHHHhhCCCCEEEeCCCCCHHHHHH
Confidence 35556655 66422 22 344 4555444 33455555 44444544
No 289
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=25.55 E-value=91 Score=23.94 Aligned_cols=36 Identities=17% Similarity=0.110 Sum_probs=28.6
Q ss_pred CCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhcC
Q psy16481 23 KAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLGG 59 (175)
Q Consensus 23 ~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~~ 59 (175)
.+-+.+.++ |++|+++ ++++|+|..+.......++.
T Consensus 95 ~lypgv~e~-L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~ 131 (220)
T TIGR01691 95 HLYPDVPPA-LEAWLQLGLRLAVYSSGSVPAQKLLFGH 131 (220)
T ss_pred CcCcCHHHH-HHHHHHCCCEEEEEeCCCHHHHHHHHhh
Confidence 466788899 9999998 99999999887765555543
No 290
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=25.17 E-value=1e+02 Score=19.78 Aligned_cols=31 Identities=16% Similarity=0.310 Sum_probs=19.4
Q ss_pred EEEEecCCCccCCCCCCCHHHHHHHHHhhCCC-eEEEEEcC
Q psy16481 8 ICLFDVDGTLTQPRQKAQNETLDFLLKKLKPL-SHLAIVSG 47 (175)
Q Consensus 8 li~~DlDGTLl~~~~~i~~~~~~~~l~~l~~~-i~~~iaTG 47 (175)
-++++=|||.++++. - ++.|.++ .-+++..|
T Consensus 42 ~lvL~eDGT~VddEe--------y-F~tLp~nT~lm~L~~g 73 (78)
T PF02017_consen 42 RLVLEEDGTEVDDEE--------Y-FQTLPDNTVLMLLEKG 73 (78)
T ss_dssp EEEETTTTCBESSCH--------H-HCCSSSSEEEEEEESS
T ss_pred EEEEeCCCcEEccHH--------H-HhhCCCCCEEEEECCC
Confidence 357788999988652 2 5566666 44444444
No 291
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=24.80 E-value=1.3e+02 Score=16.24 Aligned_cols=12 Identities=25% Similarity=0.241 Sum_probs=9.6
Q ss_pred CHHHHHHHHHHH
Q psy16481 94 GEDKIQTFINYC 105 (175)
Q Consensus 94 ~~~~~~~i~~~~ 105 (175)
+++.+++|+.++
T Consensus 23 ~~~Ka~~im~lA 34 (36)
T PF06200_consen 23 PPDKAQEIMLLA 34 (36)
T ss_pred CHHHHHHHHHHh
Confidence 888888887665
No 292
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=24.60 E-value=3.6e+02 Score=21.41 Aligned_cols=80 Identities=18% Similarity=0.201 Sum_probs=47.6
Q ss_pred cCCCccCC---CCCCCHHHHHHHHHhhCCCeEEEEEcCCCHHHHHHHhcCCCcccccceEEecCCceeeeCCeEeeccch
Q psy16481 13 VDGTLTQP---RQKAQNETLDFLLKKLKPLSHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLVAYKNGKLFEKKSI 89 (175)
Q Consensus 13 lDGTLl~~---~~~i~~~~~~~~l~~l~~~i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~~NGa~i~~~~~~i~~~~l 89 (175)
-||-++.- ..+.+.+..+. +++......+.++||=....+.+++... +.++. |+.+..+|+ +....
T Consensus 172 aDavivtG~~TG~~~d~~~l~~-vr~~~~~~PvllggGvt~eNv~e~l~~a------dGviV--gS~~K~~G~--~~n~~ 240 (257)
T TIGR00259 172 ADAVILSGKTTGTEVDLELLKL-AKETVKDTPVLAGSGVNLENVEELLSIA------DGVIV--ATTIKKDGV--FNNFV 240 (257)
T ss_pred CCEEEECcCCCCCCCCHHHHHH-HHhccCCCeEEEECCCCHHHHHHHHhhC------CEEEE--CCCcccCCc--cCCCc
Confidence 35555553 23566555555 5442323789999999999998887631 23444 333444554 22334
Q ss_pred hhhhCHHHHHHHHHHHHH
Q psy16481 90 IDHMGEDKIQTFINYCLQ 107 (175)
Q Consensus 90 ~~~l~~~~~~~i~~~~~~ 107 (175)
+.+.++++++.+++
T Consensus 241 ----D~~rV~~Fm~~v~~ 254 (257)
T TIGR00259 241 ----DQARVSQFVEKVAH 254 (257)
T ss_pred ----CHHHHHHHHHHHHH
Confidence 78888888776643
No 293
>KOG3982|consensus
Probab=23.78 E-value=91 Score=26.19 Aligned_cols=47 Identities=17% Similarity=0.119 Sum_probs=30.8
Q ss_pred ceEEEEe--cCCCccC----CCCCCCHHHHHH--HHHhhCC--C-eEEEEEcCCCHHH
Q psy16481 6 NTICLFD--VDGTLTQ----PRQKAQNETLDF--LLKKLKP--L-SHLAIVSGSDMNK 52 (175)
Q Consensus 6 ~kli~~D--lDGTLl~----~~~~i~~~~~~~--~l~~l~~--~-i~~~iaTGR~~~~ 52 (175)
-|+|+++ +|||++. .|.....+.+.+ +.+.--+ + .+||=-|||....
T Consensus 139 FkVvaLgdVpDgT~Vti~aGNDEnyc~ElRN~tA~mknQVAkFNDLRFVGRSGRGKsF 196 (475)
T KOG3982|consen 139 FKVVALGDVPDGTLVTIMAGNDENYCAELRNCTAVMKNQVAKFNDLRFVGRSGRGKSF 196 (475)
T ss_pred eEEEEecccCCCcEEEEEecCCcchhHHhhhhHHHHHhhhhhhccceeecccCCCcce
Confidence 3777776 7999987 445666666643 1332222 3 8899999998653
No 294
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=23.65 E-value=1.3e+02 Score=24.41 Aligned_cols=30 Identities=17% Similarity=0.222 Sum_probs=21.9
Q ss_pred HHhhCCC---eEEEEEcCCCHHHHHHHhcCCCc
Q psy16481 33 LKKLKPL---SHLAIVSGSDMNKVAEQLGGEKV 62 (175)
Q Consensus 33 l~~l~~~---i~~~iaTGR~~~~~~~~~~~~~~ 62 (175)
+++|++. -..+++||+.+......++.+++
T Consensus 20 ~~~l~~~~~~~~~~~~tg~h~~~~~~~~~~~~i 52 (365)
T TIGR00236 20 IRALKKYPEIDSYVIVTAQHREMLDQVLDLFHL 52 (365)
T ss_pred HHHHhhCCCCCEEEEEeCCCHHHHHHHHHhcCC
Confidence 7777664 45799999999777777666654
No 295
>cd06537 CIDE_N_B CIDE_N domain of CIDE-B proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45 and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=23.35 E-value=1.3e+02 Score=19.51 Aligned_cols=33 Identities=21% Similarity=0.383 Sum_probs=21.4
Q ss_pred eEEEEecCCCccCCCCCCCHHHHHHHHHhhCCC-eEEEEEcCC
Q psy16481 7 TICLFDVDGTLTQPRQKAQNETLDFLLKKLKPL-SHLAIVSGS 48 (175)
Q Consensus 7 kli~~DlDGTLl~~~~~i~~~~~~~~l~~l~~~-i~~~iaTGR 48 (175)
--|+++=|||-++++ +- ++.|..+ .-+++.-|-
T Consensus 40 ~~lvLeeDGT~Vd~E--------ey-F~tLpdnT~lm~L~~gq 73 (81)
T cd06537 40 LTLVLEEDGTAVDSE--------DF-FELLEDDTCLMVLEQGQ 73 (81)
T ss_pred eEEEEecCCCEEccH--------HH-HhhCCCCCEEEEECCCC
Confidence 457889999998753 22 6667777 555555443
No 296
>PRK12348 sgaE L-ribulose-5-phosphate 4-epimerase; Reviewed
Probab=23.32 E-value=2e+02 Score=22.09 Aligned_cols=53 Identities=15% Similarity=0.214 Sum_probs=34.1
Q ss_pred cceEEEEecCCCccCCCCCCCHHHHHHHHHhhCCC--eEEEEEcCCCHHHHHHHhc
Q psy16481 5 ANTICLFDVDGTLTQPRQKAQNETLDFLLKKLKPL--SHLAIVSGSDMNKVAEQLG 58 (175)
Q Consensus 5 ~~kli~~DlDGTLl~~~~~i~~~~~~~~l~~l~~~--i~~~iaTGR~~~~~~~~~~ 58 (175)
.-.++.+|+||+.+..+...|.+..-= +.-.+.+ +..++=|=-++......++
T Consensus 52 ~~dlv~vd~dG~~ieg~~kpssE~~lH-~~IYr~rpdv~aVvHtH~p~ata~a~~~ 106 (228)
T PRK12348 52 ADDMVVVDMSGKVVEGEYRPSSDTATH-LELYRRYPSLGGIVHTHSTHATAWAQAG 106 (228)
T ss_pred HHHEEEECCCCCCCCCCCCCCccHHHH-HHHHHhCCCCCEEEecCcHHHHHHHHcC
Confidence 346899999999998765666554322 2223333 7778877777776655443
No 297
>PRK09762 galactosamine-6-phosphate isomerase; Provisional
Probab=23.12 E-value=61 Score=25.05 Aligned_cols=36 Identities=11% Similarity=0.188 Sum_probs=25.6
Q ss_pred CCCHHHHHHHHHhhCCC--eEEEEEcCCCHHHHHHHhc
Q psy16481 23 KAQNETLDFLLKKLKPL--SHLAIVSGSDMNKVAEQLG 58 (175)
Q Consensus 23 ~i~~~~~~~~l~~l~~~--i~~~iaTGR~~~~~~~~~~ 58 (175)
.+.+...+.+.+.+.++ ..+++++|+++..+.+.+.
T Consensus 11 ~~~~~~a~~i~~~i~~~~~~~l~lsgGstP~~~y~~L~ 48 (232)
T PRK09762 11 ALSERASEYLLAVIRSKPDAVICLATGATPLLTYHYLV 48 (232)
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHH
Confidence 45555556545555555 8999999999998866654
No 298
>PF02410 Oligomerisation: Oligomerisation domain; InterPro: IPR004394 The gene iojap is a pattern-striping gene in maize, reflecting a chloroplast development defect in some cells. Maize has two RNA polymerases in plastids, but the plastid-encoded one, similar to bacterial RNA polymerases, is missing in iojap mutants. The role of iojap in chloroplast development, and the role of its bacterial orthologs modeled here, is unclear [, ]. This entry contains the bacterial protein YbeB (P0AAT6 from SWISSPROT), which has been shown to comigrate with the mature 50S ribosome subunit. Therefore it either represents a novel ribosome-associated protein or it is associated with a different oligomeric complex that comigrates with ribosomal particles [].; PDB: 2O5A_A 2ID1_B 3UPS_A.
Probab=22.84 E-value=64 Score=21.40 Aligned_cols=14 Identities=21% Similarity=0.342 Sum_probs=11.7
Q ss_pred eEEEEEcCCCHHHH
Q psy16481 40 SHLAIVSGSDMNKV 53 (175)
Q Consensus 40 i~~~iaTGR~~~~~ 53 (175)
-.|+||||++...+
T Consensus 30 dy~II~T~~S~rh~ 43 (100)
T PF02410_consen 30 DYFIIATGRSERHV 43 (100)
T ss_dssp SEEEEEEESSHHHH
T ss_pred CEEEEEEcCCHHHH
Confidence 46899999998865
No 299
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=22.74 E-value=92 Score=23.19 Aligned_cols=19 Identities=21% Similarity=0.323 Sum_probs=10.9
Q ss_pred HHhhCCC--eEEEEEc-CCCHH
Q psy16481 33 LKKLKPL--SHLAIVS-GSDMN 51 (175)
Q Consensus 33 l~~l~~~--i~~~iaT-GR~~~ 51 (175)
++.+.+. +.+.|.| |.+..
T Consensus 103 veA~g~~GDvLigISTSGNS~n 124 (176)
T COG0279 103 VEALGQPGDVLIGISTSGNSKN 124 (176)
T ss_pred HHhcCCCCCEEEEEeCCCCCHH
Confidence 5555554 6666665 55544
No 300
>smart00266 CAD Domains present in proteins implicated in post-mortem DNA fragmentation.
Probab=22.72 E-value=1.3e+02 Score=19.05 Aligned_cols=29 Identities=17% Similarity=0.406 Sum_probs=18.1
Q ss_pred eEEEEecCCCccCCCCCCCHHHHHHHHHhhCCCeEEEE
Q psy16481 7 TICLFDVDGTLTQPRQKAQNETLDFLLKKLKPLSHLAI 44 (175)
Q Consensus 7 kli~~DlDGTLl~~~~~i~~~~~~~~l~~l~~~i~~~i 44 (175)
--|+++=|||.++++ +- ++.|..+..|++
T Consensus 39 ~~l~L~eDGT~VddE--------ey-F~tLp~nt~l~~ 67 (74)
T smart00266 39 VTLVLEEDGTIVDDE--------EY-FQTLPDNTELMA 67 (74)
T ss_pred cEEEEecCCcEEccH--------HH-HhcCCCCcEEEE
Confidence 457788899998754 22 555666633333
No 301
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=22.67 E-value=1.4e+02 Score=22.08 Aligned_cols=48 Identities=27% Similarity=0.315 Sum_probs=31.6
Q ss_pred CCCHHHHHHHHHhhCCCeEEEEEcCCCHHHHHHHhcCCCcccccceEEe
Q psy16481 23 KAQNETLDFLLKKLKPLSHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFP 71 (175)
Q Consensus 23 ~i~~~~~~~~l~~l~~~i~~~iaTGR~~~~~~~~~~~~~~~~~~~~~i~ 71 (175)
+..+.+.+. |++++++.+++++|--........+..+|+...++.++.
T Consensus 99 ~~~~~~~~~-L~~l~~~~~l~ilTNg~~~~~~~~l~~~gl~~~Fd~v~~ 146 (229)
T COG1011 99 PDYPEALEA-LKELGKKYKLGILTNGARPHQERKLRQLGLLDYFDAVFI 146 (229)
T ss_pred ccChhHHHH-HHHHHhhccEEEEeCCChHHHHHHHHHcCChhhhheEEE
Confidence 566788888 888888877788876555555556666554444554443
No 302
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=22.67 E-value=95 Score=25.08 Aligned_cols=31 Identities=10% Similarity=0.387 Sum_probs=22.4
Q ss_pred HHHHHHHhhCCC--eEEEEEcCCCHHHHHHHhc
Q psy16481 28 TLDFLLKKLKPL--SHLAIVSGSDMNKVAEQLG 58 (175)
Q Consensus 28 ~~~~~l~~l~~~--i~~~iaTGR~~~~~~~~~~ 58 (175)
+.+-+.+++.+. -.++++|||.-..+.+.|.
T Consensus 37 ~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD 69 (291)
T COG1210 37 LIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFD 69 (291)
T ss_pred hHHHHHHHHHHcCCCEEEEEecCCcchHHHhCc
Confidence 344447777776 6799999999988765543
No 303
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=22.49 E-value=80 Score=21.25 Aligned_cols=32 Identities=22% Similarity=0.381 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHH
Q psy16481 23 KAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAE 55 (175)
Q Consensus 23 ~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~ 55 (175)
.-++++.++ ++.++++ ++++..|+.+-..+.+
T Consensus 58 G~t~~~~~~-~~~a~~~g~~vi~iT~~~~s~la~ 90 (128)
T cd05014 58 GETDELLNL-LPHLKRRGAPIIAITGNPNSTLAK 90 (128)
T ss_pred CCCHHHHHH-HHHHHHCCCeEEEEeCCCCCchhh
Confidence 345677777 8888777 7777777776655544
No 304
>cd06539 CIDE_N_A CIDE_N domain of CIDE-A proteins. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins. These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40, ICAD/DFF45, and CIDE nucleases during apoptosis. The CIDE protein family includes 3 members: CIDE-A, CIDE-B, and FSP27(CIDE-C). Based on sequence similarity with DFF40 and DFF45, the CIDE proteins were initially characterized as mitochondrial activators of apoptosis. However, strong metabolic phenotypes of mice lacking CIDE-A and CIDE-B indicated that this family may play critical roles in energy balance.
Probab=22.40 E-value=1.4e+02 Score=19.18 Aligned_cols=32 Identities=19% Similarity=0.441 Sum_probs=20.6
Q ss_pred eEEEEecCCCccCCCCCCCHHHHHHHHHhhCCC-eEEEEEcC
Q psy16481 7 TICLFDVDGTLTQPRQKAQNETLDFLLKKLKPL-SHLAIVSG 47 (175)
Q Consensus 7 kli~~DlDGTLl~~~~~i~~~~~~~~l~~l~~~-i~~~iaTG 47 (175)
--++++=|||-++++ +- ++.|..+ .-+++.-|
T Consensus 41 ~~lvL~eDGT~Vd~E--------ey-F~~LpdnT~lm~L~~g 73 (78)
T cd06539 41 VTLVLEEDGTVVDTE--------EF-FQTLGDNTHFMVLEKG 73 (78)
T ss_pred cEEEEeCCCCEEccH--------HH-HhhCCCCCEEEEECCC
Confidence 457789999998753 22 6666677 55555444
No 305
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=22.38 E-value=96 Score=20.75 Aligned_cols=33 Identities=12% Similarity=0.235 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHh
Q psy16481 24 AQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQL 57 (175)
Q Consensus 24 i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~ 57 (175)
-+.++.+. ++.++++ .+++..|++.-..+.+..
T Consensus 65 ~~~~~~~~-~~~ak~~g~~vi~iT~~~~~~l~~~a 98 (131)
T PF01380_consen 65 ETRELIEL-LRFAKERGAPVILITSNSESPLARLA 98 (131)
T ss_dssp TTHHHHHH-HHHHHHTTSEEEEEESSTTSHHHHHS
T ss_pred cchhhhhh-hHHHHhcCCeEEEEeCCCCCchhhhC
Confidence 45677888 8888887 888888888777765543
No 306
>PRK06833 L-fuculose phosphate aldolase; Provisional
Probab=22.34 E-value=1.3e+02 Score=22.88 Aligned_cols=52 Identities=13% Similarity=0.180 Sum_probs=30.1
Q ss_pred cceEEEEecCCCccCCCCCCCHHHHHH-HHHhhCCCeEEEEEcCCCHHHHHHH
Q psy16481 5 ANTICLFDVDGTLTQPRQKAQNETLDF-LLKKLKPLSHLAIVSGSDMNKVAEQ 56 (175)
Q Consensus 5 ~~kli~~DlDGTLl~~~~~i~~~~~~~-~l~~l~~~i~~~iaTGR~~~~~~~~ 56 (175)
.-.++.+|+||..+......|.++.-= -+-+.+..+..++=|=-++......
T Consensus 54 ~~div~vd~~g~~i~g~~~ps~E~~lH~~iy~~rpdv~aVvH~H~~~a~a~s~ 106 (214)
T PRK06833 54 PEDIVIMDLDGKVVEGERKPSSELDMHLIFYRNREDINAIVHTHSPYATTLAC 106 (214)
T ss_pred HHHEEEEcCCCCCcCCCCCCCccHHHHHHHHHhCCCCCEEEEeCcHHHHHHHH
Confidence 346889999999998765566554422 0323332366666655555444333
No 307
>COG3384 Aromatic ring-opening dioxygenase, catalytic LigB subunit related enzyme [Amino acid transport and metabolism]
Probab=22.23 E-value=91 Score=24.93 Aligned_cols=48 Identities=25% Similarity=0.293 Sum_probs=32.2
Q ss_pred CCCcceEEEEecCCCccCCCCCCCHHHHHHHHHhhCCCeEEEEEcCCCHHHH
Q psy16481 2 TCRANTICLFDVDGTLTQPRQKAQNETLDFLLKKLKPLSHLAIVSGSDMNKV 53 (175)
Q Consensus 2 ~~~~~kli~~DlDGTLl~~~~~i~~~~~~~~l~~l~~~i~~~iaTGR~~~~~ 53 (175)
+..++|+|=+-++.|+ ..+. +-+.=++ |++|++..-.++|||.....+
T Consensus 129 PdadipVV~iSi~~~~-~~~~--h~~lG~a-l~~lree~vlilaSGs~~H~l 176 (268)
T COG3384 129 PDADIPVVQISIDCTL-SPAD--HYELGRA-LRKLREEGVLILASGSLVHNL 176 (268)
T ss_pred CccCCcEEEEecCCCC-CHHH--HHHHHHH-HHHHHhCCEEEEecCcceeeh
Confidence 3457788888888888 3222 2244567 777777766778888776655
No 308
>TIGR02744 TrbI_Ftype type-F conjugative transfer system protein TrbI. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=22.15 E-value=66 Score=22.16 Aligned_cols=26 Identities=19% Similarity=0.252 Sum_probs=19.2
Q ss_pred ceEEEEecCCCccC-----CCCCCCHHHHHH
Q psy16481 6 NTICLFDVDGTLTQ-----PRQKAQNETLDF 31 (175)
Q Consensus 6 ~kli~~DlDGTLl~-----~~~~i~~~~~~~ 31 (175)
...++|||.+||-. .++.++++-.++
T Consensus 32 P~iV~fdmk~tld~F~~q~~~~~lte~q~~~ 62 (112)
T TIGR02744 32 PVTVAFDMKQTLDAFFDSASQKKLSEAQQKA 62 (112)
T ss_pred CeEEEEecHHHHHHHHHHHhhcCCCHHHHHH
Confidence 45788999999965 345777776665
No 309
>cd06536 CIDE_N_ICAD CIDE_N domain of ICAD. The CIDE_N (cell death-inducing DFF45-like effector, N-terminal) domain is found at the N-terminus of the CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD (DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of the CAD/DFF40 and ICAD/DFF45 during apoptosis. In normal cells, DFF exists in the nucleus as a heterodimer composed of CAD/DFF40 as a latent nuclease and its chaperone and inhibitor subunit ICAD/DFF45. Apoptotic activation of caspase-3 results in the cleavage of DFF45/ICAD and release of active DFF40/CAD nuclease.
Probab=21.98 E-value=1.3e+02 Score=19.40 Aligned_cols=32 Identities=19% Similarity=0.375 Sum_probs=20.6
Q ss_pred eEEEEecCCCccCCCCCCCHHHHHHHHHhhCCC-eEEEEEcC
Q psy16481 7 TICLFDVDGTLTQPRQKAQNETLDFLLKKLKPL-SHLAIVSG 47 (175)
Q Consensus 7 kli~~DlDGTLl~~~~~i~~~~~~~~l~~l~~~-i~~~iaTG 47 (175)
--|+++=|||.++++ +- ++.|..+ .-+++.-|
T Consensus 43 ~~lvL~eDGT~VddE--------ey-F~tLp~nT~l~~L~~g 75 (80)
T cd06536 43 ITLVLAEDGTIVEDE--------DY-FLCLPPNTKFVLLAEN 75 (80)
T ss_pred eEEEEecCCcEEccH--------HH-HhhCCCCcEEEEECCC
Confidence 457789999998753 22 6667777 44454444
No 310
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=21.53 E-value=3.5e+02 Score=20.17 Aligned_cols=29 Identities=21% Similarity=0.339 Sum_probs=18.3
Q ss_pred EEEEEcCCCH-HHHHHHhcCCCcccccceEEecCCcee
Q psy16481 41 HLAIVSGSDM-NKVAEQLGGEKVLEQFDFVFPENGLVA 77 (175)
Q Consensus 41 ~~~iaTGR~~-~~~~~~~~~~~~~~~~~~~i~~NGa~i 77 (175)
.++++=||.- ..+...+.. ..|+.||..+
T Consensus 4 evIVVEGK~D~~~lk~~~d~--------~~I~T~Gs~i 33 (174)
T TIGR00334 4 EIIVVEGKDDQARIKQAFDV--------DVIETNGSAL 33 (174)
T ss_pred eEEEEecchHHHHHHHhcCc--------eEEEECCCcc
Confidence 4677889984 445444421 3678788765
No 311
>PRK02853 hypothetical protein; Provisional
Probab=21.19 E-value=1.5e+02 Score=21.73 Aligned_cols=43 Identities=12% Similarity=0.088 Sum_probs=30.9
Q ss_pred CCCcceEEEEecCC-CccCCCCCCCHHHHHHHHHhhCCCeEEEEE
Q psy16481 2 TCRANTICLFDVDG-TLTQPRQKAQNETLDFLLKKLKPLSHLAIV 45 (175)
Q Consensus 2 ~~~~~kli~~DlDG-TLl~~~~~i~~~~~~~~l~~l~~~i~~~ia 45 (175)
.+...+++..+||. |+-.....+..+..-| |--|-+...|.+.
T Consensus 5 ~~~~~Rl~~i~LDe~~~~~~~p~vE~ER~vA-IfDLlEeN~F~p~ 48 (161)
T PRK02853 5 ADGRNRLVDVELDEASIGRSTPDVEHERAVA-IFDLLEENSFAPE 48 (161)
T ss_pred cccccceEEEEeccccCCCCChhHHHHHHHH-HHHHhhhceecCC
Confidence 44566999999997 8888888888888888 5555554445444
No 312
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=21.15 E-value=28 Score=25.27 Aligned_cols=14 Identities=21% Similarity=0.344 Sum_probs=11.5
Q ss_pred ceEEEEecCCCccC
Q psy16481 6 NTICLFDVDGTLTQ 19 (175)
Q Consensus 6 ~kli~~DlDGTLl~ 19 (175)
+|.||+|||-||.+
T Consensus 3 kk~iaIDmD~vLad 16 (180)
T COG4502 3 KKTIAIDMDTVLAD 16 (180)
T ss_pred CceEEeeHHHHHHH
Confidence 67899999988854
No 313
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=21.02 E-value=2.5e+02 Score=21.86 Aligned_cols=46 Identities=17% Similarity=0.205 Sum_probs=31.5
Q ss_pred EEEEe-cCCCccCCCCCCCHHHHHHHHHhhCCC---eEEEEEcCCCHHHHHHHh
Q psy16481 8 ICLFD-VDGTLTQPRQKAQNETLDFLLKKLKPL---SHLAIVSGSDMNKVAEQL 57 (175)
Q Consensus 8 li~~D-lDGTLl~~~~~i~~~~~~~~l~~l~~~---i~~~iaTGR~~~~~~~~~ 57 (175)
.+=+| |||.++++ -++.+...++ |++.... +++.+. +|...+..+.
T Consensus 30 ~lH~DiMDG~FVPN-~tfg~~~i~~-ir~~t~~~~DvHLMv~--~P~~~i~~~~ 79 (229)
T PRK09722 30 YFHIDIMDGHFVPN-LTLSPFFVSQ-VKKLASKPLDVHLMVT--DPQDYIDQLA 79 (229)
T ss_pred EEEEecccCccCCC-cccCHHHHHH-HHhcCCCCeEEEEEec--CHHHHHHHHH
Confidence 33344 69999986 4689999999 9887654 555554 6666665444
No 314
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=21.02 E-value=79 Score=23.17 Aligned_cols=31 Identities=19% Similarity=0.266 Sum_probs=23.2
Q ss_pred cCCCccCC-----CCCCCHHHHHHHHHhhCCC-eEEE
Q psy16481 13 VDGTLTQP-----RQKAQNETLDFLLKKLKPL-SHLA 43 (175)
Q Consensus 13 lDGTLl~~-----~~~i~~~~~~~~l~~l~~~-i~~~ 43 (175)
++||++.. +...+++.-+..++.+++. +.-+
T Consensus 1 itGtF~q~~~~d~~~~~~~~~W~~~~~~m~~~Gidtl 37 (166)
T PF14488_consen 1 ITGTFLQPWSWDIHQNWTPAQWREEFRAMKAIGIDTL 37 (166)
T ss_pred CceEEEccccchhhcCCCHHHHHHHHHHHHHcCCcEE
Confidence 58999986 4488888887778888886 4433
No 315
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=20.77 E-value=2e+02 Score=22.35 Aligned_cols=11 Identities=9% Similarity=0.027 Sum_probs=5.0
Q ss_pred HHHHHHHHHhc
Q psy16481 99 QTFINYCLQHL 109 (175)
Q Consensus 99 ~~i~~~~~~~~ 109 (175)
.++.+.+++.+
T Consensus 240 ~~~~~~~~~~g 250 (254)
T TIGR00735 240 GEVKEYLAERG 250 (254)
T ss_pred HHHHHHHHHCC
Confidence 34444455443
No 316
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=20.64 E-value=72 Score=22.50 Aligned_cols=27 Identities=11% Similarity=0.193 Sum_probs=19.4
Q ss_pred cceEEEEecCCCccC-----CCCCCCHHHHHH
Q psy16481 5 ANTICLFDVDGTLTQ-----PRQKAQNETLDF 31 (175)
Q Consensus 5 ~~kli~~DlDGTLl~-----~~~~i~~~~~~~ 31 (175)
....+.|||.+||=. .++.++++-.++
T Consensus 44 ~P~iV~FDmK~Tld~F~~Q~~~~~lte~q~e~ 75 (128)
T PRK13717 44 APVTAAFNMKQTVDAFFDSASQKQLSEAQSKA 75 (128)
T ss_pred CCeEEEEehHHHHHHHHHHHhccCCCHHHHHH
Confidence 457899999999955 334677666665
No 317
>PRK10671 copA copper exporting ATPase; Provisional
Probab=20.14 E-value=55 Score=30.38 Aligned_cols=21 Identities=29% Similarity=0.428 Sum_probs=17.2
Q ss_pred CcceEEEEecCCCccCCCCCC
Q psy16481 4 RANTICLFDVDGTLTQPRQKA 24 (175)
Q Consensus 4 ~~~kli~~DlDGTLl~~~~~i 24 (175)
.+.+.|+||-+|||+..+-++
T Consensus 515 ~~v~~v~fDKTGTLT~g~~~v 535 (834)
T PRK10671 515 STLDTLVFDKTGTLTEGKPQV 535 (834)
T ss_pred cCCCEEEEcCCCccccCceEE
Confidence 467899999999999976443
No 318
>PRK15418 transcriptional regulator LsrR; Provisional
Probab=20.09 E-value=66 Score=26.25 Aligned_cols=43 Identities=28% Similarity=0.526 Sum_probs=23.2
Q ss_pred EEEecCCCccCCCCCCCHHHHHHHHHhhCCC-eEEEEEcCCCHHH
Q psy16481 9 CLFDVDGTLTQPRQKAQNETLDFLLKKLKPL-SHLAIVSGSDMNK 52 (175)
Q Consensus 9 i~~DlDGTLl~~~~~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~ 52 (175)
-+||.||-++.+ ..+.+++.-.=|+.|++- ..+++|.|.....
T Consensus 246 ~f~D~~G~~v~~-~~~~~r~igi~le~Lk~ip~~I~vA~G~~K~~ 289 (318)
T PRK15418 246 YFFDADGELVPD-IKIHNELIGLPLSSLKTIPTVIGVAGGEEKAE 289 (318)
T ss_pred eEECCCCCCcCC-cccccceecCCHHHHcCCCCEEEEecCHHHHH
Confidence 467888877731 112222222115556655 6777777765544
No 319
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=20.07 E-value=1.1e+02 Score=20.61 Aligned_cols=33 Identities=18% Similarity=0.255 Sum_probs=23.5
Q ss_pred CCCHHHHHHHHHhhCCC-eEEEEEcCCCHHHHHHHhc
Q psy16481 23 KAQNETLDFLLKKLKPL-SHLAIVSGSDMNKVAEQLG 58 (175)
Q Consensus 23 ~i~~~~~~~~l~~l~~~-i~~~iaTGR~~~~~~~~~~ 58 (175)
.-++++.++ ++.++++ ++++..|+.. .+.+...
T Consensus 54 G~t~e~i~~-~~~a~~~g~~iI~IT~~~--~l~~~~~ 87 (119)
T cd05017 54 GNTEETLSA-VEQAKERGAKIVAITSGG--KLLEMAR 87 (119)
T ss_pred CCCHHHHHH-HHHHHHCCCEEEEEeCCc--hHHHHHH
Confidence 346788888 8899888 8888888765 3544443
Done!