RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16481
(175 letters)
>gnl|CDD|240305 PTZ00174, PTZ00174, phosphomannomutase; Provisional.
Length = 247
Score = 170 bits (433), Expect = 9e-54
Identities = 66/125 (52%), Positives = 88/125 (70%), Gaps = 1/125 (0%)
Query: 6 NTICLFDVDGTLTQPRQKAQNETLDFLLKKLKPLSHLAIVSGSDMNKVAEQLGGEKVLEQ 65
TI LFDVDGTLT+PR E D L K + +V GSD K+ EQLG E VLE
Sbjct: 5 KTILLFDVDGTLTKPRNPITQEMKDTLAKLKSKGFKIGVVGGSDYPKIKEQLG-EDVLED 63
Query: 66 FDFVFPENGLVAYKNGKLFEKKSIIDHMGEDKIQTFINYCLQHLSTVTLPFKRGNFIEFR 125
FD+VF ENGLVAYK+G+LF +SI+ +GE+K++ FIN+CL++++ + +P KRG FIE+R
Sbjct: 64 FDYVFSENGLVAYKDGELFHSQSILKFLGEEKLKKFINFCLRYIADLDIPVKRGTFIEYR 123
Query: 126 TGLIN 130
G+IN
Sbjct: 124 NGMIN 128
>gnl|CDD|178043 PLN02423, PLN02423, phosphomannomutase.
Length = 245
Score = 143 bits (362), Expect = 5e-43
Identities = 61/126 (48%), Positives = 94/126 (74%), Gaps = 2/126 (1%)
Query: 5 ANTICLFDVDGTLTQPRQKAQNETLDFLLKKLKPLSHLAIVSGSDMNKVAEQLGGEKVLE 64
I LFDVDGTLT PR++A E L+F+ K+L+ + + +V GSD++K++EQLG + V+
Sbjct: 6 PGVIALFDVDGTLTAPRKEATPEMLEFM-KELRKVVTVGVVGGSDLSKISEQLG-KTVIN 63
Query: 65 QFDFVFPENGLVAYKNGKLFEKKSIIDHMGEDKIQTFINYCLQHLSTVTLPFKRGNFIEF 124
+D+VF ENGLVA+K+GKL +S+ +GEDK++ FIN+ L +++ + +P KRG FIEF
Sbjct: 64 DYDYVFSENGLVAHKDGKLIGTQSLKSFLGEDKLKEFINFTLHYIADLDIPIKRGTFIEF 123
Query: 125 RTGLIN 130
R+G++N
Sbjct: 124 RSGMLN 129
>gnl|CDD|202597 pfam03332, PMM, Eukaryotic phosphomannomutase. This enzyme
EC:5.4.2.8 is involved in the synthesis of the
GDP-mannose and dolichol-phosphate-mannose required for
a number of critical mannosyl transfer reactions.
Length = 219
Score = 128 bits (323), Expect = 2e-37
Identities = 54/98 (55%), Positives = 76/98 (77%), Gaps = 1/98 (1%)
Query: 33 LKKLKPLSHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLVAYKNGKLFEKKSIIDH 92
L+KL+ + +V GSD+ K+ EQLG + VL++FD+VF ENGLVAYK GKL +SII+H
Sbjct: 4 LQKLRKRVTIGVVGGSDLEKIQEQLG-DNVLDEFDYVFSENGLVAYKGGKLLASQSIINH 62
Query: 93 MGEDKIQTFINYCLQHLSTVTLPFKRGNFIEFRTGLIN 130
+GE+K+Q IN+CL++++ + LP KRG FIEFR G+IN
Sbjct: 63 LGEEKLQKLINFCLRYIADLDLPIKRGTFIEFRNGMIN 100
>gnl|CDD|119389 cd01427, HAD_like, Haloacid dehalogenase-like hydrolases. The
haloacid dehalogenase-like (HAD) superfamily includes
L-2-haloacid dehalogenase, epoxide hydrolase,
phosphoserine phosphatase, phosphomannomutase,
phosphoglycolate phosphatase, P-type ATPase, and many
others, all of which use a nucleophilic aspartate in
their phosphoryl transfer reaction. All members possess
a highly conserved alpha/beta core domain, and many
also possess a small cap domain, the fold and function
of which is variable. Members of this superfamily are
sometimes referred to as belonging to the DDDD
superfamily of phosphohydrolases.
Length = 139
Score = 41.6 bits (98), Expect = 3e-05
Identities = 22/90 (24%), Positives = 30/90 (33%), Gaps = 14/90 (15%)
Query: 8 ICLFDVDGTLTQPRQKAQN-----------ETLDFLLKKLKPLSHLAIVSGSDMNKVAEQ 56
LFD+DGTL E L L +K L A+ + +V E
Sbjct: 1 AVLFDLDGTLLDSEPGIAEIEELELYPGVKEALKELKEKGIKL---ALATNKSRREVLEL 57
Query: 57 LGGEKVLEQFDFVFPENGLVAYKNGKLFEK 86
L + + FD V NG Y +
Sbjct: 58 LEELGLDDYFDPVITSNGAAIYYPKEGLFL 87
>gnl|CDD|223635 COG0561, Cof, Predicted hydrolases of the HAD superfamily [General
function prediction only].
Length = 264
Score = 41.2 bits (97), Expect = 9e-05
Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 7/98 (7%)
Query: 11 FDVDGTLTQPRQKAQNETLDFLLKKLKPLSHLAIVSGSDMNKVAEQLGGEKVLEQFDFVF 70
FD+DGTL + ET + L + + + + +G + V L + L +
Sbjct: 8 FDLDGTLLDSNKTISPETKEALARLREKGVKVVLATGRPLPDVLSIL---EELGLDGPLI 64
Query: 71 PENGLVAYKNGKLFEKKSIIDHMGEDKIQTFINYCLQH 108
NG + Y G+L +K + + ++ +
Sbjct: 65 TFNGALIYNGGELLFQKPL----SREDVEELLELLEDF 98
>gnl|CDD|219777 pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase. This
family contains haloacid dehalogenase-like hydrolase
enzymes.
Length = 254
Score = 38.4 bits (90), Expect = 7e-04
Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 16/103 (15%)
Query: 11 FDVDGTLTQPRQKAQNETLDFLLKKLKPLSH-LAIVSG---SDMNKVAEQLGGEKVLEQF 66
D+DGTL +K T + +KKL+ + I +G V E+LG +
Sbjct: 3 SDLDGTLLNSDKKISERTKE-AIKKLQEKGIKVVIATGRPYRGALPVLEELGLD------ 55
Query: 67 DFVFPENG-LVAYKNGKLFEKKSIIDHMGEDKIQTFINYCLQH 108
V NG + +NGK+ K + + ++ ++ I Y ++
Sbjct: 56 LPVICYNGAYIYDENGKILYK----NPISKEDVKEIIEYLKEN 94
>gnl|CDD|233434 TIGR01484, HAD-SF-IIB, HAD-superfamily hydrolase, subfamily IIB.
This subfamily falls within the Haloacid Dehalogenase
(HAD) superfamily of aspartate-nucleophile hydrolases.
The Class II subfamilies are characterized by a domain
that is located between the second and third conserved
catalytic motifs of the superfamily domain. The IIB
subfamily is distinguished from the IIA subfamily
(TIGR01460) by homology and the predicted secondary
structure of this domain by PSI-PRED. The IIB
subfamily's Class II domain has the following predicted
structure: Helix-Sheet-Sheet-(Helix or
Sheet)-Helix-Sheet-(variable)-Helix-Sheet-Sheet. The IIB
subfamily consists of Trehalose-6-phosphatase
(TIGR00685), plant and cyanobacterial
Sucrose-phosphatase and a closely related group of
bacterial and archaeal sequences, eukaryotic
phosphomannomutase (pfam03332), a large subfamily
("Cof-like hydrolases", TIGR00099) containing many
closely related bacterial sequences, a hypothetical
equivalog containing the E. coli YedP protein, as well
as two small clusters containing OMNI|TC0379 and
OMNI|SA2196 whose relationship to the other groups is
unclear [Unknown function, Enzymes of unknown
specificity].
Length = 204
Score = 35.0 bits (81), Expect = 0.009
Identities = 20/106 (18%), Positives = 44/106 (41%), Gaps = 14/106 (13%)
Query: 10 LFDVDGTLTQPRQ-KAQNETLDFLLKKLKPLSHLAIVSGSD---MNKVAEQLGGEKVLEQ 65
FD+DGTL P + ET++ L + + + +V+G + ++ +QL ++ +
Sbjct: 3 FFDLDGTLLDPNAHELSPETIEALERLREAGVKVVLVTGRSLAEIKELLKQL-PLPLIAE 61
Query: 66 FDFVFPENGLVAYKNGKLFEKK---------SIIDHMGEDKIQTFI 102
+ G + Y ++ + + + E + TFI
Sbjct: 62 NGALIFYPGEILYIEPSDVFEEILGIKEEIGAELKSLSEHYVGTFI 107
>gnl|CDD|184712 PRK14501, PRK14501, putative bifunctional trehalose-6-phosphate
synthase/HAD hydrolase subfamily IIB; Provisional.
Length = 726
Score = 34.9 bits (81), Expect = 0.017
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 10 LFDVDGTLT----QPRQKAQNETLDFLLKKL--KPLSHLAIVSGSDMNKVAEQLGG 59
L D DGTL P ++ L LL++L P + +AI+SG D + + G
Sbjct: 496 LLDYDGTLVPFAPDPELAVPDKELRDLLRRLAADPNTDVAIISGRDRDTLERWFGD 551
>gnl|CDD|232824 TIGR00099, Cof-subfamily, Cof subfamily of IIB subfamily of
haloacid dehalogenase superfamily. This subfamily of
sequences falls within the Class-IIB subfamily
(TIGR01484) of the Haloacid Dehalogenase superfamily of
aspartate-nucleophile hydrolases. The use of the name
"Cof" as an identifier here is arbitrary and refers to
the E. coli Cof protein. This subfamily is notable for
the large number of recent paralogs in many species.
Listeria, for instance, has 12, Clostridium, Lactococcus
and Streptococcus pneumoniae have 8 each, Enterococcus
and Salmonella have 7 each, and Bacillus subtilus,
Mycoplasma, Staphylococcus and E. coli have 6 each. This
high degree of gene duplication is limited to the gamma
proteobacteria and low-GC gram positive lineages. The
profusion of genes in this subfamily is not coupled with
a high degree of divergence, so it is impossible to
determine an accurate phylogeny at the equivalog level.
Considering the relationship of this subfamily to the
other known members of the HAD-IIB subfamily
(TIGR01484), sucrose and trehalose phosphatases and
phosphomannomutase, it seems a reasonable hypothesis
that these enzymes act on phosphorylated sugars.
Possibly the diversification of genes in this subfamily
represents the diverse sugars and polysaccharides that
various bacteria find in their biological niches. The
members of this subfamily are restricted almost
exclusively to bacteria (one sequences from S. pombe
scores above trusted, while another is between trusted
and noise). It is notable that no archaea are found in
this group, the closest relations to the archaea found
here being two Deinococcus sequences [Unknown function,
Enzymes of unknown specificity].
Length = 256
Score = 30.3 bits (69), Expect = 0.37
Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 6/101 (5%)
Query: 8 ICLFDVDGTLTQPRQKAQNETLDFLLKKLKPLSHLAIVSGSDMNKVAEQLGGEKVLEQFD 67
+ D+DGTL T + L K + + + +G +V L
Sbjct: 1 LIFIDLDGTLLNDDHTISPSTKEALAKLREKGIKVVLATGRPYKEVKNILKELG--LDTP 58
Query: 68 FVFPENGLVAYKNGKLFEKKSIIDHMGEDKIQTFINYCLQH 108
F+ V G++ KK + D ++ +N+ +H
Sbjct: 59 FITANGAAVIDDQGEILYKKPL----DLDLVEEILNFLKKH 95
>gnl|CDD|224493 COG1577, ERG12, Mevalonate kinase [Lipid metabolism].
Length = 307
Score = 30.4 bits (69), Expect = 0.42
Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 73 NGLVAYKNGKLFEKKSIIDHMGEDKIQTFINYCLQHLSTVTLPFKRGNFIEFRTGLINSI 132
GLVA+K G FEK I E I ST L +E +I+ I
Sbjct: 151 GGLVAFKKGFDFEKLEI-----ELLGTLVIGDTGVPGSTKELVAGVAKLLEEEPEVIDPI 205
Query: 133 IDHMGE 138
+D +GE
Sbjct: 206 LDAIGE 211
>gnl|CDD|237309 PRK13211, PRK13211, N-acetylglucosamine-binding protein A;
Reviewed.
Length = 478
Score = 30.4 bits (69), Expect = 0.51
Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 26/101 (25%)
Query: 10 LFDVDGT-LTQPRQKAQNETLDFLLK--KLKPLSHLAIVSGSDMN-----------KVAE 55
+++ DG L Q + + L KLK H+ +V + +
Sbjct: 347 VYNHDGEALGSKSQTVNDGSQSVSLDLSKLKAGHHMLVVKAKPKDGELIKQQTLDFMLEA 406
Query: 56 QLGGEKVLEQFDFVFPENGLVAY---------KNGKLFEKK 87
+ +DFVFPE GL +Y K+GK+++ K
Sbjct: 407 KDPPPSG--DYDFVFPE-GLKSYTAGTKVLQPKDGKVYQCK 444
>gnl|CDD|182291 PRK10187, PRK10187, trehalose-6-phosphate phosphatase;
Provisional.
Length = 266
Score = 29.7 bits (67), Expect = 0.73
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 6/53 (11%)
Query: 4 RANTICLFDVDGTL----TQPRQKAQNETLDFLLKKLKPLSH--LAIVSGSDM 50
AN FD+DGTL P Q + + L+ L + LA++SG M
Sbjct: 12 SANYAWFFDLDGTLAEIKPHPDQVVVPDNILQGLQLLATANDGALALISGRSM 64
>gnl|CDD|223634 COG0560, SerB, Phosphoserine phosphatase [Amino acid transport
and metabolism].
Length = 212
Score = 28.4 bits (64), Expect = 1.5
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 6/33 (18%)
Query: 4 RANTICLFDVDGTLTQPRQKAQNETLDFLLKKL 36
R + +FD+DGTL E +D L +
Sbjct: 3 RMKKLAVFDLDGTLINA------ELIDELARGA 29
>gnl|CDD|99967 cd03793, GT1_Glycogen_synthase_GSY2_like, Glycogen synthase, which
is most closely related to the GT1 family of
glycosyltransferases, catalyzes the transfer of a
glucose molecule from UDP-glucose to a terminal branch
of a glycogen molecule, a rate-limit step of glycogen
biosynthesis. GSY2, the member of this family in S.
cerevisiae, has been shown to possess glycogen synthase
activity.
Length = 590
Score = 27.3 bits (61), Expect = 4.6
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 16/71 (22%)
Query: 11 FDVDGTL---TQPRQKAQNETLDFLLKKLKPLSHLAIVSGSDMNKVA------------- 54
FD+D TL T R + N+ D L+ L L++L V GSD VA
Sbjct: 293 FDLDKTLYFFTAGRYEFSNKGADMFLEALARLNYLLKVEGSDTTVVAFFIMPAKTNNFNV 352
Query: 55 EQLGGEKVLEQ 65
E L G+ V +Q
Sbjct: 353 ESLKGQAVRKQ 363
>gnl|CDD|203307 pfam05693, Glycogen_syn, Glycogen synthase. This family consists
of the eukaryotic glycogen synthase proteins GYS1, GYS2
and GYS3. Glycogen synthase (GS) is the enzyme
responsible for the synthesis of -1,4-linked glucose
chains in glycogen. It is the rate limiting enzyme in
the synthesis of the polysaccharide, and its activity is
highly regulated through phosphorylation at multiple
sites and also by allosteric effectors, mainly glucose
6-phosphate (G6P).
Length = 633
Score = 27.4 bits (61), Expect = 5.1
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 11 FDVDGTL---TQPRQKAQNETLDFLLKKLKPLSHLAIVSGSDMNKVA 54
FD+D TL R + N+ D ++ L L+H SGS + VA
Sbjct: 288 FDLDKTLYFFIAGRYEFSNKGADMFIESLARLNHRLKTSGSKVTVVA 334
>gnl|CDD|213628 TIGR01487, Pglycolate_arch, phosphoglycolate phosphatase,
TA0175-type. This group of Archaeal sequences, now
known to be phosphoglycolate phosphatases, is most
closely related to the sucrose-phosphate phosphatases
from plants and cyanobacteria (TIGR01485). Together,
these two models comprise a subfamily model (TIGR01482).
TIGR01482, in turn, is a member of the IIB subfamily
(TIGR01484) of the Haloacid Dehalogenase (HAD)
superfamily of aspartate-nucleophile hydrolases.
Length = 215
Score = 27.0 bits (60), Expect = 5.1
Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 12 DVDGTLTQPRQKAQNETLDFLLKKLKPLSHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFP 71
D+DGTLT+P + ++ + K K +++V+G+ + A L ++ V
Sbjct: 7 DIDGTLTEPNRMISERAIEAIRKAEKKGIPVSLVTGNTV-PFARAL--AVLIGTSGPVVA 63
Query: 72 ENG-LVAYKNGKLF----EKKSIIDHMGEDKIQTFINYCLQH 108
ENG ++ Y +F E++ +D K + F L +
Sbjct: 64 ENGGVIFYNKEDIFLANMEEEWFLDEE---KKKRFPRDRLSN 102
>gnl|CDD|130608 TIGR01545, YfhB_g-proteo, haloacid dehalogenase superfamily,
subfamily IF hydrolase, YfhB. This model describes a
clade of sequences limited to the gamma proteobacteria.
This group is a member of the haloacid dehalogenase
(HAD) superfamily of aspartate-dependent hydrolases and
all of the conserved catalytic motifs are present.
Although structurally similar to subfamily IA in that
the variable domain is predicted to consist of five
consecutive alpha helices (by PSI-PRED), it is
sufficiently divergent to warrant being regarded as a
separate sub-family (IF). The gene name comes from the
E. coli gene. There is currently no information
regarding the function of this gene.
Length = 210
Score = 26.8 bits (59), Expect = 5.5
Identities = 18/41 (43%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 5 ANTICLFDVDGTLTQPRQKAQNETLDFLLKKLKPLSHLAIV 45
A I FD+DGTL Q Q L FLL+ L PL+ L ++
Sbjct: 4 AKRIIFFDLDGTLHQ--QDMFGSFLRFLLRHL-PLNALLVI 41
>gnl|CDD|221729 pfam12710, HAD, haloacid dehalogenase-like hydrolase.
Length = 122
Score = 26.4 bits (58), Expect = 5.5
Identities = 21/111 (18%), Positives = 34/111 (30%), Gaps = 14/111 (12%)
Query: 9 CLFDVDGTLTQ---------PRQKAQNETLDFLLKKLKPLSHL-AIVSGSD---MNKVAE 55
+FD+DGTLT L + L L IVSGS + VA+
Sbjct: 1 AVFDLDGTLTDSDTALLLLLEALAEDRRLGLLGLSDAEELLELVVIVSGSPEPLVRPVAK 60
Query: 56 QLGGEKVLEQFDFVFPENGLVAY-KNGKLFEKKSIIDHMGEDKIQTFINYC 105
LG + V + K + + + + + +
Sbjct: 61 ALGIDDVNVVGTELENVLVDGRLTGKLDGEGKAAALKRLAQKIGRYPVVAV 111
>gnl|CDD|235057 PRK02628, nadE, NAD synthetase; Reviewed.
Length = 679
Score = 27.1 bits (61), Expect = 5.7
Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 69 VFPENGLVAYKNGKLFEKKSIIDHMGEDKIQTFINYC--LQHLSTVTLPFKRGN 120
VFPE L Y LF + +++D ED + T + L L V P + +
Sbjct: 50 VFPELSLSGYSCDDLFLQDTLLDA-VEDALATLVEASADLDPLLVVGAPLRVRH 102
>gnl|CDD|215555 PLN03063, PLN03063, alpha,alpha-trehalose-phosphate synthase
(UDP-forming); Provisional.
Length = 797
Score = 26.8 bits (59), Expect = 7.2
Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 14/79 (17%)
Query: 6 NTICLFDVDGTLTQPRQKAQNET-------LDFLLKKL--KPLSHLAIVSGSDMNKVAEQ 56
N + + GTLT+PR E L LK L P + + ++S S + + +
Sbjct: 507 NRLLILGFYGTLTEPRNSQIKEMDLGLHPELKETLKALCSDPKTTVVVLSRSGKDILDKN 566
Query: 57 LGGEKVLEQFDFVFPENGL 75
G + ++ ENG+
Sbjct: 567 FGEYNI-----WLAAENGM 580
>gnl|CDD|182173 PRK09968, PRK09968, serine/threonine-specific protein phosphatase
2; Provisional.
Length = 218
Score = 26.4 bits (58), Expect = 7.6
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 12/93 (12%)
Query: 22 QKAQNETLDFLLKKLKPLSHLAIVSGSDMNKV---AEQLGGE----KVLEQFDFVFPENG 74
Q E D LLK L H+ ++ ++ V A+ G E K + + + ++P +
Sbjct: 107 DSEQQEATDLLLK-FHHLPHIIEITNDNIKYVIAHADYPGDEYDFGKEIAESELLWPVDR 165
Query: 75 LVAYKNGKLFEKKS----IIDHMGEDKIQTFIN 103
+ NG+L + I HM D IQTF N
Sbjct: 166 VQKSLNGELQQINGADYFIFGHMMFDNIQTFAN 198
>gnl|CDD|216069 pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase. This
family is structurally different from the alpha/beta
hydrolase family (pfam00561). This family includes
L-2-haloacid dehalogenase, epoxide hydrolases and
phosphatases. The structure of the family consists of
two domains. One is an inserted four helix bundle,
which is the least well conserved region of the
alignment, between residues 16 and 96 of Pseudomonas
sp. (S)-2-haloacid dehalogenase 1. The rest of the fold
is composed of the core alpha/beta domain. Those
members with the characteristic DxD triad at the
N-terminus are probably phosphatidylglycerolphosphate
(PGP) phosphatases involved in cardiolipin biosynthesis
in the mitochondria.
Length = 187
Score = 26.5 bits (58), Expect = 7.8
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 8 ICLFDVDGTLTQPRQK-AQNETLDFLLKKL 36
+FD+DGTLT + E L L
Sbjct: 3 AVVFDLDGTLTDGEPVVPEAEALLEAAAAL 32
>gnl|CDD|183218 PRK11590, PRK11590, hypothetical protein; Provisional.
Length = 211
Score = 26.2 bits (58), Expect = 9.0
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Query: 1 MTCRANTICLFDVDGTLTQPRQKAQNETLDFLLKKLKPLSHLAIV 45
M + FD+DGTL Q Q L +LL++ PL+ L ++
Sbjct: 1 MATHERRVVFFDLDGTLHQ--QDMFGSFLRYLLRRQ-PLNLLLVL 42
>gnl|CDD|220157 pfam09261, Alpha-mann_mid, Alpha mannosidase, middle domain.
Members of this family adopt a structure consisting of
three alpha helices, in an
immunoglobulin/albumin-binding domain-like fold. They
are predominantly found in the enzyme
alpha-mannosidase.
Length = 82
Score = 24.8 bits (55), Expect = 9.8
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 15 GTLT-QPRQKAQNETLDFLLKKLKPLSHLAIVSGSD 49
GT T +P K N L+ LL+ + L+ LA + G+
Sbjct: 5 GTYTSRPDIKRLNRKLESLLRAAELLASLASLLGNK 40
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.141 0.416
Gapped
Lambda K H
0.267 0.0626 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,851,681
Number of extensions: 816043
Number of successful extensions: 815
Number of sequences better than 10.0: 1
Number of HSP's gapped: 808
Number of HSP's successfully gapped: 41
Length of query: 175
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 85
Effective length of database: 6,945,742
Effective search space: 590388070
Effective search space used: 590388070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.6 bits)