RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16481
(175 letters)
>3f9r_A Phosphomannomutase; trypanosome glycobiology structural genomics,
isomerase, structural genomics consortium, SGC; 1.85A
{Trypanosoma brucei} PDB: 2i54_A* 2i55_A*
Length = 246
Score = 99.2 bits (246), Expect = 3e-26
Identities = 53/146 (36%), Positives = 83/146 (56%), Gaps = 3/146 (2%)
Query: 6 NTICLFDVDGTLTQPRQKAQNETLDFLLKKLKPLSHLAIVSGSDMNKVAEQLGGEKVLEQ 65
+ LFDVDGTLT PR +E + + + V GSD K EQL G VL Q
Sbjct: 4 RVLLLFDVDGTLTPPRLCQTDEMRALIKRARGAGFCVGTVGGSDFAKQVEQL-GRDVLTQ 62
Query: 66 FDFVFPENGLVAYKNGKLFEKKSIIDHMGEDKIQTFINYCLQHLSTVTLPFKRGNFIEFR 125
FD+VF ENGL+AY+NG ++S+++ +G D+I F+ L+ ++ + +P +RG F+E+R
Sbjct: 63 FDYVFAENGLLAYRNGLEIHRQSLLNALGNDRIVKFVKKTLRLIADLDIPVQRGTFVEYR 122
Query: 126 TGLINSIIDHMGEDKIQTFINYCLQH 151
G+IN + +G + Q + +
Sbjct: 123 NGMIN--VSPIGRNCSQAERDEFEVY 146
>2amy_A PMM 2, phosphomannomutase 2; HS.459855, HS.313504, BC008310,
phosphatase, PFAM PF03332, H superfamily, jaecken
disease; 2.09A {Homo sapiens} SCOP: c.108.1.10 PDB:
2q4r_A
Length = 246
Score = 96.5 bits (239), Expect = 3e-25
Identities = 69/136 (50%), Positives = 91/136 (66%), Gaps = 2/136 (1%)
Query: 7 TICLFDVDGTLTQPRQKAQNETLDFLLKKLKPLSHLAIVSGSDMNKVAEQLGGEKVLEQF 66
+CLFDVDGTLT PRQK E DF L+KL+ + +V GSD KV EQ G V+E++
Sbjct: 7 ALCLFDVDGTLTAPRQKITKEMDDF-LQKLRQKIKIGVVGGSDFEKVQEQ-LGNDVVEKY 64
Query: 67 DFVFPENGLVAYKNGKLFEKKSIIDHMGEDKIQTFINYCLQHLSTVTLPFKRGNFIEFRT 126
D+VFPENGLVAYK+GKL +++I H+GE IQ INYCL +++ + LP KRG FIEFR
Sbjct: 65 DYVFPENGLVAYKDGKLLCRQNIQSHLGEALIQDLINYCLSYIAKIKLPKKRGTFIEFRN 124
Query: 127 GLINSIIDHMGEDKIQ 142
G++N + +
Sbjct: 125 GMLNVSPIGRSCSQEE 140
>2fue_A PMM 1, PMMH-22, phosphomannomutase 1; enzyme-product complex,
protein glycosyl carbohydrate-deficient glycoprotein
syndrome; HET: MSE M1P; 1.75A {Homo sapiens} SCOP:
c.108.1.10 PDB: 2fuc_A*
Length = 262
Score = 96.2 bits (238), Expect = 6e-25
Identities = 65/126 (51%), Positives = 91/126 (72%), Gaps = 2/126 (1%)
Query: 6 NTICLFDVDGTLTQPRQKAQNETLDFLLKKLKPLSHLAIVSGSDMNKVAEQLG-GEKVLE 64
+CLFDVDGTLT RQK E F L+KL+ + +V GSD K+AEQLG G++V+E
Sbjct: 13 RVLCLFDVDGTLTPARQKIDPEVAAF-LQKLRSRVQIGVVGGSDYCKIAEQLGDGDEVIE 71
Query: 65 QFDFVFPENGLVAYKNGKLFEKKSIIDHMGEDKIQTFINYCLQHLSTVTLPFKRGNFIEF 124
+FD+VF ENG V YK+G+L K++I +H+GE+ +Q IN+CL +++ + LP KRG FIEF
Sbjct: 72 KFDYVFAENGTVQYKHGRLLSKQTIQNHLGEELLQDLINFCLSYMALLRLPKKRGTFIEF 131
Query: 125 RTGLIN 130
R G++N
Sbjct: 132 RNGMLN 137
>1u02_A Trehalose-6-phosphate phosphatase related protein; structural
genomics, PSI; 1.92A {Thermoplasma acidophilum} SCOP:
c.108.1.15
Length = 239
Score = 40.8 bits (96), Expect = 8e-05
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 7 TICLFDVDGTLT----QPRQKAQNETLDFLLKKLKPLSHLAIVSGSDMNKVAEQLG 58
++ D DGTL P + + L L+ LK IV+G +++ L
Sbjct: 2 SLIFLDYDGTLVPIIMNPEESYADAGLLSLISDLKERFDTYIVTGRSPEEISRFLP 57
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.7 bits (89), Expect = 5e-04
Identities = 40/229 (17%), Positives = 68/229 (29%), Gaps = 81/229 (35%)
Query: 8 ICLFDVDGTLTQPRQKAQNETLDFLLKKLK--------------PLSHLAIVSGSDMNKV 53
I L TLT E LLK L P L+I++ S + +
Sbjct: 289 ISLDHHSMTLTPD------EVKSLLLKYLDCRPQDLPREVLTTNPR-RLSIIAESIRDGL 341
Query: 54 A-----EQLGGEKV-------LEQFD-----------FVFPENGLVAYKN-GKLFEKKSI 89
A + + +K+ L + VFP + + ++
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401
Query: 90 IDHMGEDKIQTFINYCL----QHLSTVTLPFKRGNFIEFRTGLIN------SIIDH---- 135
D + Y L ST+++P ++E + L N SI+DH
Sbjct: 402 SDV--MVVVNKLHKYSLVEKQPKESTISIP---SIYLELKVKLENEYALHRSIVDHYNIP 456
Query: 136 ----------MGEDK-IQTFINYCLQHLSTVTLPFKRGNFIEFRTGLIN 173
D+ + I + HL + P FR ++
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGH---HLKNIEHP---ERMTLFRMVFLD 499
Score = 37.9 bits (87), Expect = 0.001
Identities = 19/147 (12%), Positives = 52/147 (35%), Gaps = 30/147 (20%)
Query: 20 PRQKAQNETLDFLLKKLKPLSHLAIVSGSDMN---K---VAEQLGGEKVLEQFDF-VFPE 72
R + + L L +L+P ++ ++ G + K + KV + DF +F
Sbjct: 132 SRLQPYLK-LRQALLELRPAKNV-LIDG--VLGSGKTWVALDVCLSYKVQCKMDFKIF-- 185
Query: 73 NGLVAYKN-GKLFEKKSIIDHMGEDKIQTFINYCLQHLSTVTLPFKRGNFIEFRTGLINS 131
+ N +++++ + + Q N+ + + + + + L+ S
Sbjct: 186 -----WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 132 --------IIDHMGEDK--IQTFINYC 148
++ ++ ++ F C
Sbjct: 241 KPYENCLLVLLNV-QNAKAWNAFNLSC 266
Score = 31.4 bits (70), Expect = 0.15
Identities = 30/181 (16%), Positives = 45/181 (24%), Gaps = 45/181 (24%)
Query: 12 DVDGTLTQPRQKAQNETLDFLLKKLKPLSHLAIVSGSDMNKVAEQLGGEKVLEQFDF--- 68
D + Q E L K L ++ + V K F+
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENC-LLVLL--N---VQN----AKAWNAFNLSCK 267
Query: 69 --VFPENGLVAYKNGKLFEKKSIIDH----MGEDKIQTFINYCLQHLSTVTLPFKRGNFI 122
+ V +DH + D++++ + L LP
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCRPQDLP------R 320
Query: 123 EFRTG--LINSII--------------DHMGEDKIQTFINYCLQHLSTVTLPFKRGNFIE 166
E T SII H+ DK+ T I L L R F
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY---RKMFDR 377
Query: 167 F 167
Sbjct: 378 L 378
Score = 29.1 bits (64), Expect = 1.1
Identities = 19/140 (13%), Positives = 45/140 (32%), Gaps = 26/140 (18%)
Query: 11 FDVDGTLTQPRQKAQNETLDFLLKKLKPLSHLAIVSGSDMNKVAEQLGGEKVLEQF-DFV 69
FD P+ E +D ++ +S + + ++K E+++++F + V
Sbjct: 33 FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK------QEEMVQKFVEEV 86
Query: 70 FPENGLVAYKNGKLFEKKSIIDHMGEDKIQTFINYCLQHLSTVTLPFKRGN------FIE 123
N Y L + +I L F + N +++
Sbjct: 87 LRIN----Y--KFLMSPIKTEQRQPSMMTRMYI-EQRDRLYNDNQVFAKYNVSRLQPYLK 139
Query: 124 FRTGLIN-----SIIDH-MG 137
R L+ +++ +
Sbjct: 140 LRQALLELRPAKNVLIDGVL 159
Score = 28.3 bits (62), Expect = 1.9
Identities = 16/81 (19%), Positives = 25/81 (30%), Gaps = 21/81 (25%)
Query: 29 LDFLLKKLKPLSHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLVAYKNGKLFEKKS 88
FL +K++ S SGS +N L+Q F YK
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILN----------TLQQLKF---------YK--PYICDND 538
Query: 89 IIDHMGEDKIQTFINYCLQHL 109
+ I F+ ++L
Sbjct: 539 PKYERLVNAILDFLPKIEENL 559
>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid
dehalogenase-like hydrolas structural genomics, joint
center for structural genomics; HET: MSE; 2.10A
{Clostridium difficile}
Length = 274
Score = 36.8 bits (86), Expect = 0.002
Identities = 15/102 (14%), Positives = 28/102 (27%), Gaps = 16/102 (15%)
Query: 11 FDVDGTLTQPRQKAQNETLDFLLKKLKPLSHL-AIVSG---SDMNKVAEQLGGEKVLEQF 66
D+DGTL ++ + I +G + LG
Sbjct: 10 LDIDGTLRDEVYGIPESAKH-AIRLCQKNHCSVVICTGRSMGTIQDDVLSLG-------V 61
Query: 67 DFVFPENGLVAYKNGKLFEKKSIIDHMGEDKIQTFINYCLQH 108
D G +G+L +S + I+ + +
Sbjct: 62 DGYIAGGGNYIQYHGELLYNQSF----NQRLIKEVVCLLKKR 99
>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas
midwest center for structural genomics, MCSG, PSI; 1.40A
{Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A
Length = 227
Score = 34.1 bits (79), Expect = 0.013
Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 16/102 (15%)
Query: 11 FDVDGTLTQPRQKAQNETLDFLLKKLKPLSH-LAIVSG---SDMNKVAEQLGGEKVLEQF 66
DVDG LT + + ++ ++ + ++++SG + + LG
Sbjct: 10 IDVDGNLTDRDRLISTKAIE-SIRSAEKKGLTVSLLSGNVIPVVYALKIFLGIN------ 62
Query: 67 DFVFPENGLVAYKNGKLFEKKSIIDHMGEDKIQTFINYCLQH 108
VF ENG + + N SI + F+ +
Sbjct: 63 GPVFGENGGIMFDN-----DGSIKKFFSNEGTNKFLEEMSKR 99
>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD
superfamily, structural genomi structural
genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus
horikoshii} SCOP: c.108.1.10
Length = 231
Score = 32.5 bits (75), Expect = 0.042
Identities = 23/148 (15%), Positives = 59/148 (39%), Gaps = 19/148 (12%)
Query: 11 FDVDGTLTQPRQKAQNETLDFLLKKLKPL-SHLAIVSG---SDMNKVAEQLGGEKVLEQF 66
D+DGT+T P + + L+ +++ + L + +V+G + +G
Sbjct: 8 IDIDGTITYPNRMIHEKALE-AIRRAESLGIPIMLVTGNTVQFAEAASILIGTS------ 60
Query: 67 DFVFPENG-LVAYKNGKLFEKKSIIDHMGEDKIQTFINYCLQHLSTVTLPFKRGNFI--- 122
V E+G ++YK ++F + + ++I+ ++ T+P +R +
Sbjct: 61 GPVVAEDGGAISYKKKRIFLASMDEEWILWNEIRKRFPN---ARTSYTMPDRRAGLVIMR 117
Query: 123 -EFRTGLINSIIDHMGEDKIQTFINYCL 149
+ II+ + + + + +
Sbjct: 118 ETINVETVREIINELNLNLVAVDSGFAI 145
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein,
structural genomics, unknown function; 2.60A
{Geobacillus kaustophilus} PDB: 2qyh_A
Length = 258
Score = 31.7 bits (73), Expect = 0.080
Identities = 22/102 (21%), Positives = 41/102 (40%), Gaps = 16/102 (15%)
Query: 11 FDVDGTLTQPRQKAQNETLDFLLKKLKPLSHL-AIVSG---SDMNKVAEQLGGEKVLEQF 66
FD+DGTL +++ T++ +++LK AI +G V +QLG
Sbjct: 8 FDIDGTLLDEQKQLPLSTIE-AVRRLKQSGVYVAIATGRAPFMFEHVRKQLG-------I 59
Query: 67 DFVFPENGLVAYKNGKLFEKKSIIDHMGEDKIQTFINYCLQH 108
D NG G + K+ + +K++ ++
Sbjct: 60 DSFVSFNGQYVVFEGNVLYKQPL----RREKVRALTEEAHKN 97
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.12
Identities = 26/170 (15%), Positives = 43/170 (25%), Gaps = 80/170 (47%)
Query: 4 RANTICLFDVDGTL-----TQPRQKAQNETLDFLLKKLKPLSHLAIVSGSDMNKVAEQLG 58
+ + G L TQP A L L A
Sbjct: 1713 HSTSYTFRSEKGLLSATQFTQP---A-------LT-----LMEKAAF------------- 1744
Query: 59 GEKVLEQFDFVFPENGLVAYKNGKLFEKKSIIDH-MGEDKIQTFINYC-LQHLS------ 110
+ L+ + P + A G H +GE Y L L+
Sbjct: 1745 --EDLKS-KGLIPADATFA---G----------HSLGE--------YAALASLADVMSIE 1780
Query: 111 -TVTLPFKRGNFIEF----------RTGLI----NSIIDHMGEDKIQTFI 145
V + F RG ++ G+I + ++ +Q +
Sbjct: 1781 SLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVV 1830
>2fea_A 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase;
2633731, structural genomics, joint center for
structural GE JCSG; HET: MSE; 2.00A {Bacillus subtilis}
SCOP: c.108.1.20
Length = 236
Score = 30.9 bits (70), Expect = 0.17
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 7/38 (18%)
Query: 1 MTCRANTICLFDVDGTLTQPRQKAQNETLDFLLKKLKP 38
MT R + D DGT+T N+ + ++K P
Sbjct: 2 MTTR-KPFIICDFDGTIT------MNDNIINIMKTFAP 32
>2wf7_A Beta-PGM, beta-phosphoglucomutase; transition state analogue,
haloacid dehalogenase superfamily, isomerase,
phosphotransferase; HET: G7P; 1.05A {Lactococcus lactis}
PDB: 1o03_A* 1z4n_A* 1z4o_A* 1zol_A 2wf5_A* 2wf6_A*
1o08_A* 2wf8_A* 2wf9_A* 2wfa_A 2whe_A 1lvh_A* 3fm9_A
Length = 221
Score = 29.9 bits (68), Expect = 0.38
Identities = 15/104 (14%), Positives = 30/104 (28%), Gaps = 8/104 (7%)
Query: 9 CLFDVDGTLT---QPRQKAQNETLDFLLKKLKPLSHLAIVSGSDMNKVAEQLGGEKVLEQ 65
LFD+DG +T + +A + + + G +++ L+
Sbjct: 5 VLFDLDGVITDTAEYHFRAWKALAEEIGINGVDRQFNEQLKGVSREDSLQKI-----LDL 59
Query: 66 FDFVFPENGLVAYKNGKLFEKKSIIDHMGEDKIQTFINYCLQHL 109
D K +I + + I L+ L
Sbjct: 60 ADKKVSAEEFKELAKRKNDNYVKMIQDVSPADVYPGILQLLKDL 103
>3gyg_A NTD biosynthesis operon putative hydrolase NTDB; PF05116, PF08282,
MCSG, PSI-2, haloacid dehalogenase-like HY structural
genomics; 2.45A {Bacillus subtilis subsp}
Length = 289
Score = 29.8 bits (67), Expect = 0.44
Identities = 19/110 (17%), Positives = 42/110 (38%), Gaps = 9/110 (8%)
Query: 11 FDVDGTL-----TQPRQKAQNETLDFLLKKLKPLS-HLAIVSGSDMNKVAEQLGGEKVLE 64
D D T + +Q+ E D+L +K K + V+GS + + +++G K
Sbjct: 27 CDFDETYFPHTIDEQKQQDIYELEDYLEQKSKDGELIIGWVTGSSIESILDKMGRGKFRY 86
Query: 65 QFDFVFPENG-LVAY--KNGKLFEKKSIIDHMGEDKIQTFINYCLQHLST 111
F+ + G + Y ++ + + E + + ++ L
Sbjct: 87 FPHFIASDLGTEITYFSEHNFGQQDNKWNSRINEGFSKEKVEKLVKQLHE 136
>2hdo_A Phosphoglycolate phosphatase; NP_784602.1, structur genomics,
PSI-2, protein structure initiative, joint center
structural genomics; HET: MSE; 1.50A {Lactobacillus
plantarum} SCOP: c.108.1.6
Length = 209
Score = 29.4 bits (67), Expect = 0.47
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 5/22 (22%)
Query: 1 MTCRANTICLFDVDGTL--TQP 20
MT +A +FD+DGTL +QP
Sbjct: 2 MTYQA---LMFDIDGTLTNSQP 20
>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown
function; 1.00A {Bacteroides thetaiotaomicron} SCOP:
c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A
Length = 261
Score = 29.4 bits (67), Expect = 0.49
Identities = 18/103 (17%), Positives = 39/103 (37%), Gaps = 14/103 (13%)
Query: 11 FDVDGTLTQPRQKA-QNETLDFLLKKLKPLSHL-AIVSG---SDMNKVAEQLGGEKVLEQ 65
FD+DGTL + T++ L+ I +G + +N ++E
Sbjct: 7 FDIDGTLVSFETHRIPSSTIE-ALEAAHAKGLKIFIATGRPKAIINNLSELQD----RNL 61
Query: 66 FDFVFPENGLVAYKNGKLFEKKSIIDHMGEDKIQTFINYCLQH 108
D NG + ++ K +I +++++ +C +
Sbjct: 62 IDGYITMNGAYCFVGEEVIYKSAI----PQEEVKAMAAFCEKK 100
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding,
complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A
{Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Length = 388
Score = 29.6 bits (65), Expect = 0.55
Identities = 18/118 (15%), Positives = 44/118 (37%)
Query: 50 MNKVAEQLGGEKVLEQFDFVFPENGLVAYKNGKLFEKKSIIDHMGEDKIQTFINYCLQHL 109
+ + + GE+ +++F + + E SI D + + + +L
Sbjct: 223 IMNRVKMILGERSMKRFSPIGRVKSKLLQNMYGSKEIYSIDGVSILDYLDLYKKFAFTNL 282
Query: 110 STVTLPFKRGNFIEFRTGLINSIIDHMGEDKIQTFINYCLQHLSTVTLPFKRGNFIEF 167
+ +L + + + I+ + E Q +I+Y + + +V K FI+
Sbjct: 283 PSFSLESVAQHETKKGKLPYDGPINKLRETNHQRYISYNIIDVESVQAIDKIRGFIDL 340
>3dao_A Putative phosphatse; structural genomics, joint center for S
genomics, JCSG, protein structure initiative, PSI-2,
hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}
Length = 283
Score = 29.1 bits (66), Expect = 0.64
Identities = 14/102 (13%), Positives = 32/102 (31%), Gaps = 14/102 (13%)
Query: 11 FDVDGTLTQPRQKAQNETLDFLLKKLKPLS-HLAIVSG---SDMNKVAEQLGGEKVLEQF 66
D+DGTL + + ++ +L + SG S K+ + +
Sbjct: 26 TDIDGTLVKDGSLLIDPEYMSVIDRLIDKGIIFVVCSGRQFSSEFKLFAPIK-----HKL 80
Query: 67 DFVFPENGLVAYKNGKLFEKKSIIDHMGEDKIQTFINYCLQH 108
++ + G V ++ + + ED +
Sbjct: 81 LYIT-DGGTVVRTPKEILKTYPM----DEDIWKGMCRMVRDE 117
>2qlt_A (DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, saccharom
cerevisiae, structural genomics, PSI-2, protein
structure initiative; 1.60A {Saccharomyces cerevisiae}
Length = 275
Score = 28.2 bits (63), Expect = 1.2
Identities = 8/17 (47%), Positives = 10/17 (58%), Gaps = 3/17 (17%)
Query: 1 MTCRANTICLFDVDGTL 17
+ A LFDVDGT+
Sbjct: 33 LKINA---ALFDVDGTI 46
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 529
Score = 27.9 bits (63), Expect = 1.8
Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 10/77 (12%)
Query: 45 VSGSDMNKVAEQLGGEKVLEQFDFVFPENGLVAYKNGK--LFEKKSIIDHMGEDKIQTFI 102
V D+ ++A+ G VL + E A G+ ++ I +D++ I
Sbjct: 305 VLKRDLKRIAKASGA-TVLSTLANLEGEETFEASMLGQAEEVVQERI----CDDEL-ILI 358
Query: 103 NYCLQHLSTVTLPFKRG 119
++ ++ RG
Sbjct: 359 KNTKAR-TSASV-ILRG 373
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a*
Length = 559
Score = 27.9 bits (63), Expect = 2.0
Identities = 11/77 (14%), Positives = 25/77 (32%), Gaps = 10/77 (12%)
Query: 45 VSGSDMNKVAEQLGGEKVLEQFDFVFPENGLVAYKNGK--LFEKKSIIDHMGEDKIQTFI 102
D+ ++A G ++ + E + G + +D+ I
Sbjct: 321 CKKEDLRRIARATGA-TLVSSMSNLEGEETFESSYLGLCDEVVQAKF----SDDEC-ILI 374
Query: 103 NYCLQHLSTVTLPFKRG 119
+H S+ ++ RG
Sbjct: 375 KGTSKH-SSSSI-ILRG 389
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, blood
clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Length = 464
Score = 27.7 bits (61), Expect = 2.0
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 5 ANTICLFDVDGTLTQPRQKAQN--ETLDFLLKKLKPLSHLAIVSGSDMNKV 53
+ + D G++ PR K E + L + A+V+G++ +V
Sbjct: 78 NVEVIIIDCSGSMDYPRTKMMAAKEATKVAIDTLTDGAFFAVVAGTEGARV 128
>2nyv_A Pgpase, PGP, phosphoglycolate phosphatase; structural genomics,
PSI-2, protein structure initiative; 2.10A {Aquifex
aeolicus} PDB: 2yy6_A
Length = 222
Score = 27.5 bits (62), Expect = 2.2
Identities = 9/17 (52%), Positives = 11/17 (64%), Gaps = 3/17 (17%)
Query: 1 MTCRANTICLFDVDGTL 17
M+ R LFD+DGTL
Sbjct: 1 MSLRV---ILFDLDGTL 14
>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI-
protein structure initiative, midwest center for
structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides
vulgatus}
Length = 247
Score = 27.3 bits (61), Expect = 2.3
Identities = 7/18 (38%), Positives = 10/18 (55%), Gaps = 3/18 (16%)
Query: 1 MTCRANTICLFDVDGTLT 18
+ +A LFD+DG L
Sbjct: 21 IDLKA---VLFDMDGVLF 35
>3op6_A Uncharacterized protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-biology; HET: MSE; 2.00A {Legionella pneumophila
subsp}
Length = 152
Score = 26.9 bits (60), Expect = 2.5
Identities = 4/24 (16%), Positives = 10/24 (41%), Gaps = 3/24 (12%)
Query: 42 LAIVSGS---DMNKVAEQLGGEKV 62
+ ++ S K+ E +G +
Sbjct: 57 MVVLPASDHITFMKLKEAIGTSDL 80
>2ah5_A COG0546: predicted phosphatases; MCSG, structural genomics,
hydrola haloacid dehalogenase-like, PSI; 1.74A
{Streptococcus pneumoniae} SCOP: c.108.1.6
Length = 210
Score = 27.1 bits (61), Expect = 2.6
Identities = 6/10 (60%), Positives = 7/10 (70%)
Query: 9 CLFDVDGTLT 18
FD+DGTL
Sbjct: 7 IFFDLDGTLV 16
>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE; 1.51A {Lactobacillus delbrueckii}
Length = 240
Score = 27.3 bits (61), Expect = 2.8
Identities = 7/17 (41%), Positives = 11/17 (64%), Gaps = 3/17 (17%)
Query: 1 MTCRANTICLFDVDGTL 17
M +A +FD+DGT+
Sbjct: 2 MKYKA---AIFDMDGTI 15
>3ewi_A N-acylneuraminate cytidylyltransferase; beta barrel, HAD-like,
rossmannoid fold, nucleotidyltransferase, nucleus;
1.90A {Mus musculus}
Length = 168
Score = 26.7 bits (60), Expect = 2.9
Identities = 6/17 (35%), Positives = 9/17 (52%), Gaps = 2/17 (11%)
Query: 4 RANTICL--FDVDGTLT 18
+ I L ++DG LT
Sbjct: 5 KLKEIKLLVCNIDGCLT 21
>2hcf_A Hydrolase, haloacid dehalogenase-like family; NP_662590.1, ST
genomics, PSI-2, protein structure initiative; 1.80A
{Chlorobaculum tepidum} SCOP: c.108.1.6
Length = 234
Score = 26.9 bits (60), Expect = 3.6
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 10 LFDVDGTLT 18
LFD+DGTL
Sbjct: 8 LFDIDGTLL 16
>2w43_A Hypothetical 2-haloalkanoic acid dehalogenase; hydrolase,
metabolic process; HET: MES; 1.66A {Sulfolobus
tokodaii} PDB: 2w11_A
Length = 201
Score = 26.7 bits (59), Expect = 3.8
Identities = 5/11 (45%), Positives = 7/11 (63%)
Query: 7 TICLFDVDGTL 17
I FD+ GT+
Sbjct: 2 IILAFDIFGTV 12
>1tcv_A Purine-nucleoside phosphorylase; transferase; HET: NDS; 1.75A
{Schistosoma mansoni} PDB: 1tcu_A* 1td1_A 3djf_A*
3e0q_A* 3e9r_A* 3e9z_A* 3f8w_A* 3faz_A* 3fb1_A* 3fnq_A*
3iex_A*
Length = 287
Score = 26.4 bits (59), Expect = 4.5
Identities = 7/48 (14%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 16 TLTQPRQKAQNETLDFLLKKLKPLSHLAIVSGSDMNKVAEQLGGEKVL 63
++T + + + + K + + I+ GS + K+A+ + + +
Sbjct: 4 SVTANIENVK-KVAHHIQKLTSIVPEIGIICGSGLGKLADGVKDKITI 50
>2okg_A Central glycolytic gene regulator; alpha/beta/alpha sandwich,
rossmann-like fold, structural genomics, PSI-2, protein
structure initiative; HET: MSE G3H; 1.65A {Bacillus
subtilis} SCOP: c.124.1.8 PDB: 3bxe_A* 3bxf_A* 3bxg_A*
3bxh_A*
Length = 255
Score = 26.3 bits (58), Expect = 5.2
Identities = 10/46 (21%), Positives = 20/46 (43%)
Query: 30 DFLLKKLKPLSHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGL 75
+ K+ + +A+ G+ + VAE + + + FV GL
Sbjct: 48 ACMKKRFSGKNIVAVTGGTTIEAVAEMMTPDSKNRELLFVPARGGL 93
>2go7_A Hydrolase, haloacid dehalogenase-like family; structural
genomics, joint center for structural genomics, J
protein structure initiative; 2.10A {Streptococcus
pneumoniae} SCOP: c.108.1.6
Length = 207
Score = 26.4 bits (59), Expect = 5.3
Identities = 7/18 (38%), Positives = 10/18 (55%), Gaps = 3/18 (16%)
Query: 1 MTCRANTICLFDVDGTLT 18
M A ++D+DGTL
Sbjct: 2 MQKTA---FIWDLDGTLL 16
>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase;
hypothetical protein, conserved protein, phophatase-like
domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12}
SCOP: c.108.1.10
Length = 275
Score = 26.6 bits (58), Expect = 5.5
Identities = 17/101 (16%), Positives = 32/101 (31%), Gaps = 10/101 (9%)
Query: 12 DVDGTLTQPRQKAQNETLDFLLKKLKPLSH-LAIVSG---SDMNKVAEQLGGEKVLEQFD 67
D+DGTL + L +L+ + + + S ++M + + LG L+
Sbjct: 15 DLDGTLLDSHSYDWQPAAPW-LTRLREANVPVILCSSKTSAEMLYLQKTLG----LQGLP 69
Query: 68 FVFPENGLVAYKNGKLFEKKSIIDHMGEDKIQTFINYCLQH 108
+ ENG V + E +
Sbjct: 70 LIA-ENGAVIQLAEQWQEIDGFPRIISGISHGEISLVLNTL 109
>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural
genomics, protein structure initiative; 1.93A
{Clostridium acetobutylicum}
Length = 226
Score = 26.4 bits (59), Expect = 5.6
Identities = 8/10 (80%), Positives = 9/10 (90%)
Query: 9 CLFDVDGTLT 18
LFD+DGTLT
Sbjct: 7 VLFDLDGTLT 16
>3d6j_A Putative haloacid dehalogenase-like hydrolase; structural
genomics, PSI-2, protein structure initiative; 2.00A
{Bacteroides fragilis nctc 9343}
Length = 225
Score = 26.0 bits (58), Expect = 5.7
Identities = 7/17 (41%), Positives = 7/17 (41%), Gaps = 3/17 (17%)
Query: 1 MTCRANTICLFDVDGTL 17
M LFD D TL
Sbjct: 4 MKYTV---YLFDFDYTL 17
>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family
hydrolase, structural genomics, PSI, protein structure
initiative; HET: MSE; 1.60A {Pseudomonas fluorescens}
PDB: 2ybd_A* 3r09_A*
Length = 205
Score = 26.0 bits (58), Expect = 5.9
Identities = 6/13 (46%), Positives = 8/13 (61%), Gaps = 2/13 (15%)
Query: 10 LFDVDGTL--TQP 20
+FD+DGTL
Sbjct: 10 VFDMDGTLTIAVH 22
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 518
Score = 26.3 bits (59), Expect = 6.1
Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 16/78 (20%)
Query: 45 VSGSDMNKVAEQLGGEKV--LEQFDFVFPEN-GLVAYKNGKLFEKKSIIDHMGEDKIQTF 101
+ D+ + + +G + V ++QF + G + +L E+ S+ G K+
Sbjct: 307 IEREDIEFICKTIGTKPVAHVDQFT---ADMLG-----SAELAEEVSLN---GSGKL-IK 354
Query: 102 INYCLQHLSTVTLPFKRG 119
I C TVT+ RG
Sbjct: 355 ITGCASPGKTVTI-VVRG 371
>2no4_A (S)-2-haloacid dehalogenase IVA; HAD superfamily, rossman fold,
hydrol; 1.93A {Burkholderia cepacia} PDB: 2no5_A*
Length = 240
Score = 26.0 bits (57), Expect = 6.1
Identities = 6/9 (66%), Positives = 7/9 (77%)
Query: 9 CLFDVDGTL 17
C+FD GTL
Sbjct: 17 CVFDAYGTL 25
>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural
genomics, PSI-2; 2.20A {Pseudomonas syringae PV}
Length = 233
Score = 26.1 bits (58), Expect = 6.2
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 1 MTCRANTICLFDVDGTLT 18
M+ R T +FD+DGTLT
Sbjct: 1 MSLRPQTSFIFDLDGTLT 18
>3sd7_A Putative phosphatase; structural genomics, haloacid
dehalogenase-like hydrolase, H center for structural
genomics of infectious diseases; HET: PGE; 1.70A
{Clostridium difficile}
Length = 240
Score = 26.0 bits (58), Expect = 6.3
Identities = 9/18 (50%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 1 MTCRANTICLFDVDGTLT 18
M + LFD+DGTLT
Sbjct: 25 MKKNYEIV-LFDLDGTLT 41
>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase;
structural genomics, PSI, protein structure initiative;
1.70A {Bacillus subtilis} SCOP: c.108.1.10
Length = 288
Score = 26.1 bits (58), Expect = 6.5
Identities = 17/103 (16%), Positives = 43/103 (41%), Gaps = 16/103 (15%)
Query: 11 FDVDGTLTQPRQKAQNETLDFLLKKLKPL-SHLAIVSG---SDMNKVAEQLGGEKVLEQF 66
D+DGTL + + E + L++ + + + +G D+ + E LG +
Sbjct: 9 IDLDGTLLNSKHQVSLENEN-ALRQAQRDGIEVVVSTGRAHFDVMSIFEPLGIK------ 61
Query: 67 DFVFPENG-LVAYKNGKLFEKKSIIDHMGEDKIQTFINYCLQH 108
+V NG ++ G+L+ ++ + + + +++
Sbjct: 62 TWVISANGAVIHDPEGRLYHHET----IDKKRAYDILSWLESE 100
>3swj_A CHUZ, putative uncharacterized protein; heme oxygenase, bacterial
iron aquisition, heme bindin; HET: HEM; 2.41A
{Campylobacter jejuni}
Length = 251
Score = 26.3 bits (57), Expect = 6.6
Identities = 6/29 (20%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 85 EKKSIIDHMGEDKIQTFINYCLQHLSTVT 113
+SII HM + ++ C + +
Sbjct: 2 NFESIISHMNDHHKSNLVDLC-KKFGGIE 29
>2fdr_A Conserved hypothetical protein; SAD, structural genomics,
agrobacter tumefaciens, HAD-superfamily hydrolase; 2.00A
{Agrobacterium tumefaciens str} SCOP: c.108.1.6
Length = 229
Score = 26.1 bits (58), Expect = 6.8
Identities = 8/51 (15%), Positives = 15/51 (29%), Gaps = 2/51 (3%)
Query: 32 LLKKLKPLSHLAIVSGSDMNKVAEQLGGEKVLEQFDFVFPENGLVAYKNGK 82
L +L + I S S +++ L + F + K
Sbjct: 95 ALSRLT--TPRCICSNSSSHRLDMMLTKVGLKPYFAPHIYSAKDLGADRVK 143
>1nf2_A Phosphatase; structural proteomics, HAD NEW fold, structural
genomics, BSGC structure funded by NIH structure
initiative, PSI; 2.20A {Thermotoga maritima} SCOP:
c.108.1.10
Length = 268
Score = 25.9 bits (58), Expect = 6.9
Identities = 16/105 (15%), Positives = 30/105 (28%), Gaps = 15/105 (14%)
Query: 8 ICLFDVDGTLTQPRQKAQNETLDFLLKKLKPLSHLAIVSG---SDMNKVAEQLGGEKVLE 64
D+DGTL + + ++KL ++ SG V ++
Sbjct: 5 FVF-DLDGTLLNDNLEISEKDRR-NIEKLSRKCYVVFASGRMLVSTLNVEKKYFKRT--- 59
Query: 65 QFDFVFPENG-LVAYKNGKLFEKKSIIDHMGEDKIQTFINYCLQH 108
NG +V + + I + + I Y
Sbjct: 60 --FPTIAYNGAIVYLPEEGVILNEKI----PPEVAKDIIEYIKPL 98
>1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP}
SCOP: c.108.1.1 PDB: 1zrm_A 1jud_A 1qh9_A
Length = 232
Score = 26.0 bits (57), Expect = 7.3
Identities = 5/9 (55%), Positives = 6/9 (66%)
Query: 9 CLFDVDGTL 17
FD+ GTL
Sbjct: 7 IAFDLYGTL 15
>3fvv_A Uncharacterized protein; unknown function, structural genomics,
PSI,MCSG, protein STR initiative, midwest center for
structural genomics; 2.10A {Bordetella pertussis}
Length = 232
Score = 25.8 bits (57), Expect = 7.3
Identities = 9/19 (47%), Positives = 11/19 (57%), Gaps = 2/19 (10%)
Query: 1 MTCRANTICLFDVDGTLTQ 19
MT R + LFD+D TL
Sbjct: 1 MTTR--RLALFDLDHTLLP 17
>2p4s_A Purine nucleoside phosphorylase; transferase; HET: DIH; 2.20A
{Anopheles gambiae}
Length = 373
Score = 25.8 bits (57), Expect = 7.7
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 17 LTQPRQKAQNETLDFLLKKLKPLSHLAIVSGSDMNKVAEQLGGEKVL 63
+ Q E +LL++ + + I+ GS + +AEQL
Sbjct: 88 VGYTYDTLQ-EIATYLLERTELRPKVGIICGSGLGTLAEQLTDVDSF 133
>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein
transport; 1.95A {Saccharomyces cerevisiae}
Length = 392
Score = 25.9 bits (56), Expect = 9.3
Identities = 7/35 (20%), Positives = 16/35 (45%)
Query: 112 VTLPFKRGNFIEFRTGLINSIIDHMGEDKIQTFIN 146
L K ++++ GL + + G + +TF +
Sbjct: 11 FDLKLKDTEKLDWKKGLSSYLKKSYGSSQWRTFYD 45
>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI,
divalent metal, HAD superfamily, KDO 8-P, hydrolase;
1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A
3hyc_A 3i6b_A*
Length = 188
Score = 25.6 bits (57), Expect = 9.3
Identities = 8/17 (47%), Positives = 10/17 (58%), Gaps = 2/17 (11%)
Query: 4 RANTICL--FDVDGTLT 18
+A I L DVDG L+
Sbjct: 22 KAENIRLLILDVDGVLS 38
>3mmz_A Putative HAD family hydrolase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; 1.84A {Streptomyces avermitilis}
Length = 176
Score = 25.2 bits (56), Expect = 9.9
Identities = 7/17 (41%), Positives = 7/17 (41%), Gaps = 2/17 (11%)
Query: 4 RANTICL--FDVDGTLT 18
A I D DGT T
Sbjct: 8 TAEDIDAVVLDFDGTQT 24
>1te2_A Putative phosphatase; structural genomics, phosphates, PSI, protein
S initiative, midwest center for structural genomics,
MCSG; HET: MSE; 1.76A {Escherichia coli} SCOP: c.108.1.6
Length = 226
Score = 25.3 bits (56), Expect = 10.0
Identities = 6/44 (13%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 27 ETLDFLLKKLKPLSHLAIVSGSDMNKVAEQLGGEKVLEQFDFVF 70
E + ++ + + S S ++ + + L + + FD +
Sbjct: 101 EAVALCKEQGLLV---GLASASPLHMLEKVLTMFDLRDSFDALA 141
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.141 0.416
Gapped
Lambda K H
0.267 0.0561 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,627,389
Number of extensions: 149735
Number of successful extensions: 434
Number of sequences better than 10.0: 1
Number of HSP's gapped: 430
Number of HSP's successfully gapped: 90
Length of query: 175
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 88
Effective length of database: 4,272,666
Effective search space: 375994608
Effective search space used: 375994608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.0 bits)