Query psy16482
Match_columns 493
No_of_seqs 300 out of 540
Neff 5.3
Searched_HMMs 46136
Date Fri Aug 16 22:26:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16482.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16482hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2998|consensus 100.0 5.6E-74 1.2E-78 568.3 17.3 297 179-492 2-298 (302)
2 KOG3458|consensus 100.0 3.3E-63 7.2E-68 446.0 10.1 168 3-173 1-168 (170)
3 PF04727 ELMO_CED12: ELMO/CED- 100.0 2.5E-45 5.4E-50 342.5 13.6 163 305-467 3-170 (170)
4 KOG2999|consensus 99.9 1.2E-23 2.5E-28 222.7 12.4 189 297-485 277-484 (713)
5 PF06747 CHCH: CHCH domain; I 97.6 5.2E-05 1.1E-09 53.3 2.5 34 80-115 1-34 (35)
6 PF08583 Cmc1: Cytochrome c ox 90.0 0.34 7.3E-06 38.6 3.3 44 75-119 8-51 (69)
7 KOG4624|consensus 71.4 5.8 0.00013 35.0 4.0 40 78-118 31-70 (104)
8 cd00926 Cyt_c_Oxidase_VIb Cyto 67.3 4.3 9.4E-05 33.8 2.3 37 74-112 17-53 (75)
9 PF07802 GCK: GCK domain; Int 64.5 5.9 0.00013 33.2 2.5 45 76-120 9-57 (76)
10 PF02297 COX6B: Cytochrome oxi 55.0 6.8 0.00015 32.4 1.4 40 77-116 9-56 (76)
11 KOG4695|consensus 54.5 11 0.00023 33.9 2.6 37 78-116 46-82 (122)
12 PF10203 Pet191_N: Cytochrome 50.7 4.9 0.00011 32.9 -0.2 48 34-91 1-55 (68)
13 KOG2192|consensus 46.8 40 0.00086 34.8 5.5 49 72-122 144-192 (390)
14 PF10588 NADH-G_4Fe-4S_3: NADH 35.6 14 0.00031 27.1 0.3 14 207-220 22-35 (41)
15 PF10200 Ndufs5: NADH:ubiquino 34.6 22 0.00048 31.1 1.4 41 32-91 27-67 (96)
16 KOG4149|consensus 33.5 49 0.0011 30.4 3.4 40 76-115 66-105 (129)
17 KOG3057|consensus 33.0 34 0.00074 30.7 2.3 36 75-112 53-88 (112)
18 PF02320 UCR_hinge: Ubiquinol- 29.9 31 0.00067 28.0 1.4 36 58-93 17-54 (65)
19 smart00071 Galanin Galanin. Ga 26.8 1E+02 0.0022 26.9 4.1 68 114-185 8-75 (103)
20 KOG4763|consensus 24.6 44 0.00096 27.8 1.5 18 76-93 49-66 (77)
21 KOG1924|consensus 23.3 1.1E+02 0.0023 36.2 4.6 7 348-354 838-844 (1102)
22 KOG4618|consensus 23.2 54 0.0012 27.2 1.7 32 80-113 24-55 (74)
23 PF06747 CHCH: CHCH domain; I 21.9 25 0.00055 24.2 -0.4 31 38-68 1-32 (35)
No 1
>KOG2998|consensus
Probab=100.00 E-value=5.6e-74 Score=568.31 Aligned_cols=297 Identities=38% Similarity=0.601 Sum_probs=282.5
Q ss_pred HHHHhcccchhHHHHhhhhHHHHHHHhhcchhHHHHHhhCCCCCCchhHHHHHHHhhhccHHHHHHHHHhhHHHHhhhhc
Q psy16482 179 MFYYLRPVWYSVYFSYVRPLFKWILRKTTRLCELQRICYGENHGARRSLGVEYSLSHSRRYELQELIKFLNKMAVERKLH 258 (493)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~Kw~lr~~T~~cElqRIc~~~~~ga~rt~~iE~Sl~~sk~~~~~~~~~~~~~~~~~~~~~ 258 (493)
|+...|. ++|.+++|++.||.+|.+||.|||||||++++.|+.|+.++|.|+..+|....+++.++.+..
T Consensus 2 ~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~lq~~~~~~~~g~~ra~~~e~sl~~~~~~~~~~ass~~~~~------- 71 (302)
T KOG2998|consen 2 RLSAGYE---PFYDKSVRAFDKWPLSELKGHGELQRICTDAYEGASRAVRTETSLGQEKPLLGSTASSEAPPG------- 71 (302)
T ss_pred cchhhhh---hHHHHHHHHHhcccHHHHcCchHHHHHHhcCCCCCcceeecchhhhhhhhhhhcccccccChh-------
Confidence 3466677 999999999999999999999999999999999999999999999999998888888877766
Q ss_pred CCCcccchhhHHHHHHHhhCCCCCCCccHHHHHHHHHHHhhhHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHhCCCC
Q psy16482 259 GNGLMMSVKGSVDTILLVKKINPTVHVSFVKAISRCIEHIWGYRQLKQEITLLARTQYDAENAEHEEKLLRLWQMLKPDV 338 (493)
Q Consensus 259 ~~~~~~~~~~~~~~i~~~K~I~~~~~~~f~~~l~~cL~qi~gy~~L~~~ve~l~~~~~D~~n~~H~~lL~~Lw~~l~p~~ 338 (493)
....++.||..|+|++..+.++...+..|..++.||+++...++++|++|||++|++|+++|++||++++|++
T Consensus 72 -------~~~~~~~v~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~l~~~~e~~~~~~yDs~n~~H~e~L~~lwk~~~p~~ 144 (302)
T KOG2998|consen 72 -------LISFLGRVMVDKGIKNIVDPNRRIDLAACRHLIPGYRELLQRLEELRQEPYDSDNPDHEELLLDLWKLLYPDK 144 (302)
T ss_pred -------hhhhhHHHHHHhccccCCCcccchhhhhccccccCcHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHhCCCC
Confidence 3445566999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccccccccCCCCCCCccccchhhhHhhHHHHHhhChHHHHHHHHhhcCCCCccchhhHHHHHHHHHHHHhhhc
Q psy16482 339 PLNSRVTKQWQTIGFQGDDPKTDFRGMGILGLDNLLHFASEYPTTAQHVLQHSLHPQYGYAFAIVGINLTSLAYHLFQDD 418 (493)
Q Consensus 339 ~~~~r~s~~W~~IGFQg~DP~TDFRG~GlLGL~nLlyF~~~~~~~a~~il~~S~~~~~~yPFAivgINIT~ll~~lLk~g 418 (493)
++++++|+||++|||||+||+|||||||+|||+||+||+++||+.|+++|.+|.||..+|||||||||||+|++++|+.|
T Consensus 145 ~l~~lvs~qW~emGfQG~dPsTDFRG~GfL~LeNLlyFa~~~~~~aq~lL~~s~~~r~eYpfAVvgINIT~m~~qmL~~e 224 (302)
T KOG2998|consen 145 ELPGLVSKQWKEMGFQGADPSTDFRGMGFLGLENLLYFARTYPTSAQRLLLKSRHPRWEYPFAVVGINITFMAIQMLDLE 224 (302)
T ss_pred ccchhHHHHHHHhccCCCCCCcccccchHHHHHHHHHHHHhhhHHHHHHHHhcCCCccCCceEEEeecHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccCCCChhhhHHHHHHHHHHHHHHHHhhCCCCccchHHHHHHHHHHHHHHhcCCCceeeecccccC
Q psy16482 419 AAKTIVYNSCKSLPSINVFHHFYCYLFYEFDRVWMESKPCVMDFSNVKTKFENNIRSLLSNSSVLLKTDLSIDI 492 (493)
Q Consensus 419 ~l~~~fyN~~~~~~~~~~F~eLyc~~F~~Fd~~W~e~~~timDF~~V~~~fr~~i~~~L~~~~~~l~~~~~~~~ 492 (493)
++++++||....++++.+|+.|||++|.+||++|.+++++|||||.|++.|+.++++.|.+.++.+..++++.+
T Consensus 225 al~~~~~~~~~~~~~~~~F~~lYc~af~~~d~~Wl~~~~simefn~Vlk~~~~qler~L~~~d~~~~~~lp~~~ 298 (302)
T KOG2998|consen 225 ALKKHFNNIVKVFETEPAFDLLYCYAFLEFDKQWLEQRATIMEFNTVLKSFRRQLERELSLDDVLLITDLPAFN 298 (302)
T ss_pred hccccccccccccccHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhhhhhcccccchhhh
Confidence 99999999877789999999999999999999999999999999999999999999999999999999987654
No 2
>KOG3458|consensus
Probab=100.00 E-value=3.3e-63 Score=446.02 Aligned_cols=168 Identities=49% Similarity=0.814 Sum_probs=162.3
Q ss_pred cccccCCCCccCCCCCccCCchhhHhhhchHhhhhchhhhhhhhcccCcCCCcchhHHhCcchhhhHHHHHHHHHhhcHH
Q psy16482 3 LTHNFSLPTYEELEQEEVPLSSAALKAGAFHFGKTCELENNEFVLCRQELNDPRKCITEGKAVTSCALSFFRKVKESCFD 82 (493)
Q Consensus 3 ~~~~~~~p~~~el~v~e~~~ssa~L~aaa~~~g~~C~~~n~~FmlCk~e~~dP~~CL~eG~~Vt~Ca~~~~~~i~~~C~~ 82 (493)
+|++++||+++||||+||++|||+|+|+|+|||++|+++|+|||+||+|+.|||+||+||++||+||++|||+||.+|.+
T Consensus 1 it~~te~ps~~eltv~ei~lSsavLkA~A~h~g~~Ceken~eFmlcrke~~dPr~cL~eGk~vT~C~l~flr~lkr~C~~ 80 (170)
T KOG3458|consen 1 ITKDTELPSAEELTVQEIPLSSAVLKASAKHIGKQCEKENNEFMLCRKEDPDPRACLEEGKAVTRCALDFLRDLKRSCLE 80 (170)
T ss_pred CCCcccCcchhhcccccccccHHHHHHhhHHHHHhhchhhHHHHhHhhcCCCHHHHHHhchHHHHHHHHHHHHHHHHhhH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhccCCCCcccccCchhhHHHHHHHHHhcCCCCCCCCcccCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy16482 83 EFQVYANCVDKSSTNFDLTPCRNTQAVFDKCMNDKLGIDRPVYNYFLRPFVHDSNRPKPKPSDPLVFSGVPKKLDDNEPR 162 (493)
Q Consensus 83 ef~~~~~Cld~~~~~~~~~~CRk~q~~~~~C~~~~l~~~r~~~g~~~~~~~~~~~rp~p~~~~~~~~~~~~~~~~~~~~~ 162 (493)
||++||+||||++ +++|++|||+|++||+|+.+||||.||.+|||||++|++|+||.|+++....+||+.|.+|.|.+
T Consensus 81 e~~~y~~C~dyss-t~~f~~Crk~Q~~fdkcv~~kl~w~RP~lGyfSk~~v~~sar~aPe~~~k~~~pd~~pelp~Dy~- 158 (170)
T KOG3458|consen 81 EFTKYATCMDYSS-TNEFSHCRKEQEAFDKCVPDKLNWTRPKLGYFSKLHVYDSARAAPEVKYKAEAPDVLPELPADYH- 158 (170)
T ss_pred HHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhHhhcCCCCccccccceeeeeeccccCCCCccccCCCCCCCCCCcccC-
Confidence 9999999999998 46899999999999999999999999999999999999999999999988889999888887766
Q ss_pred CCCCCCCcccc
Q psy16482 163 TPAKYGGRNHG 173 (493)
Q Consensus 163 ~~~~~~~~~~~ 173 (493)
|||||||||-
T Consensus 159 -pakygsrfy~ 168 (170)
T KOG3458|consen 159 -PAKYGSRFYN 168 (170)
T ss_pred -ccccCceeee
Confidence 9999999984
No 3
>PF04727 ELMO_CED12: ELMO/CED-12 family; InterPro: IPR006816 This entry represents the ELMO (EnguLfment and Cell MOtility) domain, which is found in a number of eukaryotic proteins involved in the cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility, including CED-12, ELMO-1 and ELMO-2. ELMO-1 and ELMO-2 are components of signalling pathways that regulate phagocytosis and cell migration and are mammalian orthologues of the Caenorhabditis elegans gene, ced-12 that is required for the engulfment of dying cells and cell migration. ELMO-1/2 act in association with DOCK1 and CRK. ELMO-1/2 interact with the SH3-domain of DOCK1 via an SH3-binding site to enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1. ELMO-1/2 could be part of a complex with DOCK1 and Rac1 that could be required to activate Rac Rho small GTPases. Regulatory GTPases in the Ras superfamily employ a cycle of alternating GTP binding and hydrolysis, controlled by guanine nucleotide exchange factors and GTPase-activating proteins (GAPs), as essential features of their actions in cells. Within the Ras superfamily, the Arf family is composed of 30 members, including 22 Arf-like (Arl) proteins. The ELMO domain has been proposed to be a GAP domain for ARL2 and other members of the Arf family [].; GO: 0006909 phagocytosis, 0005856 cytoskeleton
Probab=100.00 E-value=2.5e-45 Score=342.52 Aligned_cols=163 Identities=42% Similarity=0.756 Sum_probs=151.8
Q ss_pred HHHHHHHhcccCCCCCHHHHHHHHHHHHHhCCCCCCCccccccccccccCCCCCCCccccchhhhHhhHHHHHhhChHHH
Q psy16482 305 KQEITLLARTQYDAENAEHEEKLLRLWQMLKPDVPLNSRVTKQWQTIGFQGDDPKTDFRGMGILGLDNLLHFASEYPTTA 384 (493)
Q Consensus 305 ~~~ve~l~~~~~D~~n~~H~~lL~~Lw~~l~p~~~~~~r~s~~W~~IGFQg~DP~TDFRG~GlLGL~nLlyF~~~~~~~a 384 (493)
+..|..++++|||++|++|+++|++||++++|+.+.+++.+++|+.|||||+||+|||||+|+|||.||+||+++|++.+
T Consensus 3 l~~l~~~~~~~~d~~~~~h~~~L~~Lw~~~~~~~~~~~~~~~~W~~lGFQ~~dP~tDFR~~G~LgL~~L~yf~~~~~~~~ 82 (170)
T PF04727_consen 3 LNLLRALAKTPFDPENPEHEELLQELWNALFPDEPPFSRISEHWKELGFQGEDPATDFRGMGLLGLDCLLYFAENYPDEF 82 (170)
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCCccCCcCccHHHHhCCCCCCcHHHHhhhhHHHHHHHHHHHHHChHHH
Confidence 35678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCC--CccchhhHHHHHHHHHHHHhhhcccccccccccC---CCChhhhHHHHHHHHHHHHHHHHhhCCCCc
Q psy16482 385 QHVLQHSLHPQ--YGYAFAIVGINLTSLAYHLFQDDAAKTIVYNSCK---SLPSINVFHHFYCYLFYEFDRVWMESKPCV 459 (493)
Q Consensus 385 ~~il~~S~~~~--~~yPFAivgINIT~ll~~lLk~g~l~~~fyN~~~---~~~~~~~F~eLyc~~F~~Fd~~W~e~~~ti 459 (493)
++|+.++.++. .+||||++|||||.+++++|+.|.++.+++.... .++.+.+|++|||++|..|+++|+++++++
T Consensus 83 ~~~l~~~~~~~~~~~~Pfa~~~invt~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~f~elf~~~f~~f~~~W~~~~at~ 162 (170)
T PF04727_consen 83 RRILREQSSRSDENWYPFAVASINVTSLLCELLKLGALDSEFYKRINFLSFFSSLEAFEELFCACFQLFDRTWKEMNATI 162 (170)
T ss_pred HHHHHHccCcccccccHHHHHHHHHHHHHHHHHhhcccCHHHhhcccccccCccHHHHHHHHHHHHHHHHHHHccCCCCH
Confidence 99999998766 8999999999999999999999998877555321 478899999999999999999999999999
Q ss_pred cchHHHHH
Q psy16482 460 MDFSNVKT 467 (493)
Q Consensus 460 mDF~~V~~ 467 (493)
|||++|++
T Consensus 163 ~dF~~V~~ 170 (170)
T PF04727_consen 163 MDFNKVLK 170 (170)
T ss_pred HHHHhhcC
Confidence 99999974
No 4
>KOG2999|consensus
Probab=99.90 E-value=1.2e-23 Score=222.75 Aligned_cols=189 Identities=20% Similarity=0.334 Sum_probs=165.2
Q ss_pred HhhhHHHHHHHH-HHHhcccCCCCCHHHHHHHHHHHHHhCCCCCC-----------CccccccccccccCC-CCCCCccc
Q psy16482 297 HIWGYRQLKQEI-TLLARTQYDAENAEHEEKLLRLWQMLKPDVPL-----------NSRVTKQWQTIGFQG-DDPKTDFR 363 (493)
Q Consensus 297 qi~gy~~L~~~v-e~l~~~~~D~~n~~H~~lL~~Lw~~l~p~~~~-----------~~r~s~~W~~IGFQg-~DP~TDFR 363 (493)
|++..|.|...+ +....++.|+.+.+..++++.+...++.++.. ....+...+.+||-. .||+.||-
T Consensus 277 ~lyvlq~L~~glle~Rm~~~md~~~q~qr~~i~~lr~iaf~~~~~~~~~g~~~e~rk~l~~~~ykklgf~n~~npa~df~ 356 (713)
T KOG2999|consen 277 QLYVLQVLTLGLLEVRMRTKMDPQDQVQRELISELRRIAFDDESEPSRRGGGAEVRKILDIESYKKLGFENRINPAQDFG 356 (713)
T ss_pred HHHHHHHHHHhhhHHhhhcccchhhHHHHHHHHHHHhcCcccccccccCCcchhhhhhhhHHHHHhhcccccCChHHhcc
Confidence 677778787665 44557999999999999999999998865322 234567899999999 89999996
Q ss_pred cc--hhhhHhhHHHHHhhChHHHHHHHHh--hcCCCCccchhhHHHHHHHHHHHHhhhccccccccccc--CCCChhhhH
Q psy16482 364 GM--GILGLDNLLHFASEYPTTAQHVLQH--SLHPQYGYAFAIVGINLTSLAYHLFQDDAAKTIVYNSC--KSLPSINVF 437 (493)
Q Consensus 364 G~--GlLGL~nLlyF~~~~~~~a~~il~~--S~~~~~~yPFAivgINIT~ll~~lLk~g~l~~~fyN~~--~~~~~~~~F 437 (493)
.+ |+|+|+||+||+++||+.+++|+.+ |+.+++.|||+-++|.+|.|++++|+.|.+..+..|.. ..|.+...|
T Consensus 357 etppG~LAldnMvyFA~~~~~~y~riVlENSsRedkhecpfgr~sieltk~lcEilrVge~p~E~~~df~pmfFthd~~F 436 (713)
T KOG2999|consen 357 ETPPGRLALDNMVYFARNSPQDYRRIVLENSSREDKHECPFGRMSIELTKILCELLRVGEPPDELDRDFIPMFFTHDTPF 436 (713)
T ss_pred cCCchHHHHHHHHHHHHhCHHHHHHHHHhcccccccCcCCcCccHHHHHHHHHHHHhcCCCchhhcCccceeeecCCCcH
Confidence 65 9999999999999999999999998 35678999999999999999999999999988766632 256788999
Q ss_pred HHHHHHHHHHHHHHHhhCCCCccchHHHHHHHHHHHHHHhcCCCceee
Q psy16482 438 HHFYCYLFYEFDRVWMESKPCVMDFSNVKTKFENNIRSLLSNSSVLLK 485 (493)
Q Consensus 438 ~eLyc~~F~~Fd~~W~e~~~timDF~~V~~~fr~~i~~~L~~~~~~l~ 485 (493)
+||||.+.++|+++|++|+||-.||++|+..+++|+.++|...+..|+
T Consensus 437 ee~FciciqLlnkTWKEMrAt~edf~KVmqVVrEQl~r~L~~kp~sld 484 (713)
T KOG2999|consen 437 EELFCICVQLLNRTWKEMRATAEDFEKVMQVVREQLRRALKRKPQSLD 484 (713)
T ss_pred HHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHHHHhccCCccHH
Confidence 999999999999999999999999999999999999999999888764
No 5
>PF06747 CHCH: CHCH domain; InterPro: IPR010625 A conserved motif was identified in the LOC118487 protein was called the CHCH motif. Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extended) and C (C-terminal extended) subgroups. All three sub-groups of proteins have in common that they contain a predicted conserved [coiled coil 1]-[helix 1]-[coiled coil 2]-[helix 2] domain (CHCH domain). Within each helix of the CHCH domain, there are two cysteines present in a C-X9-C motif. The N-group contains an additional double helix domain, and each helix contains the C-X9-C motif. This family contains a number of characterised proteins: Cox19 protein - a nuclear gene of Saccharomyces cerevisiae, codes for an 11 kDa protein (Cox19p) required for expression of cytochrome oxidase. Because cox19 mutants are able to synthesise the mitochondrial and nuclear gene products of cytochrome oxidase, Cox19p probably functions post-translationally during assembly of the enzyme. Cox19p is present in the cytoplasm and mitochondria, where it exists as a soluble intermembrane protein. This dual location is similar to what was previously reported for Cox17p, a low molecular weight copper protein thought to be required for maturation of the CuA centre of subunit 2 of cytochrome oxidase. Cox19p have four conserved potential metal ligands, these are three cysteines and one histidine. Mrp10 - belongs to the class of yeast mitochondrial ribosomal proteins that are essential for translation []. Eukaryotic NADH-ubiquinone oxidoreductase 19 kDa (NDUFA8) subunit []. The CHCH domain was previously called DUF657 []. ; PDB: 2ZXT_A 3A3C_A 2L0Y_A 2K3J_A.
Probab=97.56 E-value=5.2e-05 Score=53.25 Aligned_cols=34 Identities=24% Similarity=0.715 Sum_probs=30.6
Q ss_pred cHHHHHHHHhhhccCCCCcccccCchhhHHHHHHHH
Q psy16482 80 CFDEFQVYANCVDKSSTNFDLTPCRNTQAVFDKCMN 115 (493)
Q Consensus 80 C~~ef~~~~~Cld~~~~~~~~~~CRk~q~~~~~C~~ 115 (493)
|.+|+.+|+.|++.|+. +.+.||++..+|.+|+.
T Consensus 1 C~~e~~~~~~Cl~~n~~--~~~~C~~~~~~~~~C~~ 34 (35)
T PF06747_consen 1 CAEEMKAYLACLKENNF--DWSKCRKEFKAYKECRM 34 (35)
T ss_dssp THHHHHHHHHHHHCH-S--STCCCHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHCCC--cHHhhHHHHHHHHHHhh
Confidence 89999999999999875 57889999999999985
No 6
>PF08583 Cmc1: Cytochrome c oxidase biogenesis protein Cmc1 like; InterPro: IPR013892 Cmc1 is a metallo-chaperone like protein which is known to localise to the inner mitochondrial membrane in Saccharomyces cerevisiae. It is essential for full expression of cytochrome c oxidase and respiration []. Cmc1 contains two Cx9C motifs and is able to bind copper(I). Cmc1 is thought to play a role in mitochondrial copper trafficking and transfer to cytochrome c oxidase.
Probab=89.99 E-value=0.34 Score=38.63 Aligned_cols=44 Identities=18% Similarity=0.563 Sum_probs=36.8
Q ss_pred HHHhhcHHHHHHHHhhhccCCCCcccccCchhhHHHHHHHHHhcC
Q psy16482 75 KVKESCFDEFQVYANCVDKSSTNFDLTPCRNTQAVFDKCMNDKLG 119 (493)
Q Consensus 75 ~i~~~C~~ef~~~~~Cld~~~~~~~~~~CRk~q~~~~~C~~~~l~ 119 (493)
.....|.++.++|.+|...+.. .-++.||++..++++|+.+...
T Consensus 8 ~~~~~C~~~i~~~~~C~~~~~~-~~~~~C~~~~~~m~~Cl~~~~~ 51 (69)
T PF08583_consen 8 EAHKKCADEIEAFAECHKDRTF-KFVGKCREEKKAMNECLKEERN 51 (69)
T ss_pred HHHHHhHHHHHHHHHHHhcchH-HHHHhhhHHHHHHHHHHHHHHh
Confidence 4668999999999999998433 3578999999999999987643
No 7
>KOG4624|consensus
Probab=71.43 E-value=5.8 Score=35.00 Aligned_cols=40 Identities=23% Similarity=0.547 Sum_probs=35.2
Q ss_pred hhcHHHHHHHHhhhccCCCCcccccCchhhHHHHHHHHHhc
Q psy16482 78 ESCFDEFQVYANCVDKSSTNFDLTPCRNTQAVFDKCMNDKL 118 (493)
Q Consensus 78 ~~C~~ef~~~~~Cld~~~~~~~~~~CRk~q~~~~~C~~~~l 118 (493)
..|.+...+|++|--.++. .-+.-|||+-.+|+.|..+.-
T Consensus 31 ~~C~~~v~~~a~C~k~~~v-~vv~TCrkq~~elk~Cl~~~~ 70 (104)
T KOG4624|consen 31 EKCSEFVQDFADCAKASGV-SVVPTCRKQNSELKECLTQYY 70 (104)
T ss_pred HHHHHHHHHHHHHHhcCCe-eeehhhHHHHHHHHHHHHHHh
Confidence 6799999999999998864 458899999999999998764
No 8
>cd00926 Cyt_c_Oxidase_VIb Cytochrome c oxidase subunit VIb. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIb is one of three mammalian subunits that lacks a transmembrane region. It is located on the cytosolic side of the membrane and helps form the dimer interface with the corresponding subunit on the other monomer complex.
Probab=67.25 E-value=4.3 Score=33.79 Aligned_cols=37 Identities=19% Similarity=0.712 Sum_probs=31.2
Q ss_pred HHHHhhcHHHHHHHHhhhccCCCCcccccCchhhHHHHH
Q psy16482 74 RKVKESCFDEFQVYANCVDKSSTNFDLTPCRNTQAVFDK 112 (493)
Q Consensus 74 ~~i~~~C~~ef~~~~~Cld~~~~~~~~~~CRk~q~~~~~ 112 (493)
+.=.++|-+-+++|+.||+.++- +...|.+....|+.
T Consensus 17 ~nq~k~Cw~~y~~y~~Cl~~~ge--d~~~C~~~~~~~es 53 (75)
T cd00926 17 QNQTKHCWQRYVDYHRCIKAKGE--DASPCKKFRRVYES 53 (75)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCC--chHHHHHHHHHHHH
Confidence 34568999999999999999764 56789999999875
No 9
>PF07802 GCK: GCK domain; InterPro: IPR012891 This domain is found in proteins carrying other domains known to be involved in intracellular signalling pathways (such as IPR001806 from INTERPRO) indicating that it might also be involved in these pathways. It has 4 highly conserved cysteine residues, suggesting that it can bind zinc ions. Moreover, it is found repeated in some members of this family (such as Q9LMF3 from SWISSPROT); this may indicate that these domains are able to interact with one another, raising the possibility that this domain mediates heterodimerisation.
Probab=64.47 E-value=5.9 Score=33.23 Aligned_cols=45 Identities=27% Similarity=0.572 Sum_probs=34.3
Q ss_pred HHh-hcHHHHHHHHhhhc---cCCCCcccccCchhhHHHHHHHHHhcCC
Q psy16482 76 VKE-SCFDEFQVYANCVD---KSSTNFDLTPCRNTQAVFDKCMNDKLGI 120 (493)
Q Consensus 76 i~~-~C~~ef~~~~~Cld---~~~~~~~~~~CRk~q~~~~~C~~~~l~~ 120 (493)
||. -|.+.|.+.-.|.| .++.+-...+|+..-.+|.+||..+-..
T Consensus 9 MkgG~Cke~F~awe~C~~ea~~~~~~d~v~kC~e~~~~L~kCM~ahsdY 57 (76)
T PF07802_consen 9 MKGGGCKESFTAWEDCVDEAEKNKEEDFVEKCFEATAALRKCMEAHSDY 57 (76)
T ss_pred hcCCChhHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHhchhH
Confidence 444 79999999999996 3332124678999999999999976444
No 10
>PF02297 COX6B: Cytochrome oxidase c subunit VIb; InterPro: IPR003213 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex that is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptide subunits. One of these subunits is the potentially haem-binding subunit, VIb, which is encoded in the nucleus []. ; GO: 0004129 cytochrome-c oxidase activity, 0005739 mitochondrion; PDB: 1OCC_U 1OCR_U 2DYS_H 3ASO_H 3AG3_U 2EIL_H 2EIJ_U 3AG2_U 3ABM_U 2EIN_U ....
Probab=55.01 E-value=6.8 Score=32.39 Aligned_cols=40 Identities=20% Similarity=0.605 Sum_probs=30.9
Q ss_pred HhhcHHHHHHHHhhhccCCC-------CcccccCchhhHHHHH-HHHH
Q psy16482 77 KESCFDEFQVYANCVDKSST-------NFDLTPCRNTQAVFDK-CMND 116 (493)
Q Consensus 77 ~~~C~~ef~~~~~Cld~~~~-------~~~~~~CRk~q~~~~~-C~~~ 116 (493)
.++|-+..++|+.|||.++. ......|....+.|++ |...
T Consensus 9 r~~Cw~arD~y~~Cl~~~~~~~~~~~~~~~~~~C~~~~~~ye~~Cp~s 56 (76)
T PF02297_consen 9 RKKCWQARDDYFKCLDKNGEPDSEKEKKKDESACKYFRKNYESNCPSS 56 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------TTTTGGGGHHHHHHHHHHS-HH
T ss_pred HHHHHHHHHHHHHHHHHcCccccccccccchhhhHHHHHHHHHhCcHH
Confidence 57899999999999998653 0135679999999976 8653
No 11
>KOG4695|consensus
Probab=54.50 E-value=11 Score=33.87 Aligned_cols=37 Identities=24% Similarity=0.599 Sum_probs=33.2
Q ss_pred hhcHHHHHHHHhhhccCCCCcccccCchhhHHHHHHHHH
Q psy16482 78 ESCFDEFQVYANCVDKSSTNFDLTPCRNTQAVFDKCMND 116 (493)
Q Consensus 78 ~~C~~ef~~~~~Cld~~~~~~~~~~CRk~q~~~~~C~~~ 116 (493)
.+|..|+.....||.+| .|+-..|||+-..|-.|+..
T Consensus 46 ~tC~qEm~vlfaClK~n--EF~d~~C~Kei~~f~dC~~~ 82 (122)
T KOG4695|consen 46 ATCIQEMSVLFACLKQN--EFRDDACRKEIQGFLDCAAR 82 (122)
T ss_pred hHHHHHHHHHHHHHHhc--cccchHHHHHHHHHHHHHHH
Confidence 47999999999999995 67888999999999999875
No 12
>PF10203 Pet191_N: Cytochrome c oxidase assembly protein PET191; InterPro: IPR018793 This entry represents a family of conserved proteins found from nematodes to humans. Cytochrome c oxidase assembly protein Pet191 carries six highly conserved cysteine residues. Pet191 is required for the assembly of active cytochrome c oxidase but does not form part of the final assembled complex [].
Probab=50.68 E-value=4.9 Score=32.94 Aligned_cols=48 Identities=21% Similarity=0.521 Sum_probs=37.8
Q ss_pred hhhhchhhhhhhhcccCcC-------CCcchhHHhCcchhhhHHHHHHHHHhhcHHHHHHHHhhh
Q psy16482 34 FGKTCELENNEFVLCRQEL-------NDPRKCITEGKAVTSCALSFFRKVKESCFDEFQVYANCV 91 (493)
Q Consensus 34 ~g~~C~~~n~~FmlCk~e~-------~dP~~CL~eG~~Vt~Ca~~~~~~i~~~C~~ef~~~~~Cl 91 (493)
+|+.|...-+|...|-.++ +.|+.||+++ ..++-..|..-..+|.+|-
T Consensus 1 m~~sC~~~~~~L~~Cl~~SdCv~~~~~t~~~Cl~~~----------~~~~p~eC~~lr~~f~eCK 55 (68)
T PF10203_consen 1 MSKSCKGIREALAECLQESDCVKKEKRTPKDCLKDP----------SDELPEECQQLRKAFFECK 55 (68)
T ss_pred CCchHHHHHHHHHHHHhhChhhccCCCCHHHHHcCC----------CCcCCHHHHHHHHHHHHHh
Confidence 4678888899999987765 5677777666 3567889999999999994
No 13
>KOG2192|consensus
Probab=46.83 E-value=40 Score=34.83 Aligned_cols=49 Identities=12% Similarity=0.356 Sum_probs=38.4
Q ss_pred HHHHHHhhcHHHHHHHHhhhccCCCCcccccCchhhHHHHHHHHHhcCCCC
Q psy16482 72 FFRKVKESCFDEFQVYANCVDKSSTNFDLTPCRNTQAVFDKCMNDKLGIDR 122 (493)
Q Consensus 72 ~~~~i~~~C~~ef~~~~~Cld~~~~~~~~~~CRk~q~~~~~C~~~~l~~~r 122 (493)
-+++|+++|..-++-|..|.-.+.. +..----+|+..-.|+++-|.+-+
T Consensus 144 kikelrekcsarlkift~c~p~std--rv~l~~g~~k~v~~~i~~il~~i~ 192 (390)
T KOG2192|consen 144 KIKELREKCSARLKIFTECCPHSTD--RVVLIGGKPKRVVECIKIILDLIS 192 (390)
T ss_pred hHHHHHHhhhhhhhhhhccCCCCcc--eEEEecCCcchHHHHHHHHHHHhh
Confidence 4699999999999999999998764 333355667777789998886543
No 14
>PF10588 NADH-G_4Fe-4S_3: NADH-ubiquinone oxidoreductase-G iron-sulfur binding region; InterPro: IPR019574 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This entry describes the G subunit (one of 14 subunits, A to N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This family does not contain related subunits from formate dehydrogenase complexes. This entry represents the iron-sulphur binding domain of the G subunit.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3.
Probab=35.58 E-value=14 Score=27.10 Aligned_cols=14 Identities=36% Similarity=0.619 Sum_probs=10.2
Q ss_pred cchhHHHHHhhCCC
Q psy16482 207 TRLCELQRICYGEN 220 (493)
Q Consensus 207 T~~cElqRIc~~~~ 220 (493)
.|.||||.+++...
T Consensus 22 ~G~CeLQ~~~~~~g 35 (41)
T PF10588_consen 22 NGNCELQDLAYEYG 35 (41)
T ss_dssp GGG-HHHHHHHHH-
T ss_pred CCCCHHHHHHHHhC
Confidence 69999999997643
No 15
>PF10200 Ndufs5: NADH:ubiquinone oxidoreductase, NDUFS5-15kDa; InterPro: IPR019342 Proteins in this entry form part of the NADH:ubiquinone oxidoreductase complex I. Complex I is the first multisubunit inner membrane protein complex of the mitochondrial electron transport chain and it transfers two electrons from NADH to ubiquinone. The mammalian complex I is composed of 45 different subunits. The proteins in this entry represent a component of the iron-sulphur (IP) fragment of the enzyme, that is not involved in catalysis. These proteins carry four highly conserved cysteine residues, but these do not appear to be in a configuration which would favour metal binding, so the exact function of the protein is uncertain [].
Probab=34.58 E-value=22 Score=31.13 Aligned_cols=41 Identities=24% Similarity=0.511 Sum_probs=0.0
Q ss_pred hHhhhhchhhhhhhhcccCcCCCcchhHHhCcchhhhHHHHHHHHHhhcHHHHHHHHhhh
Q psy16482 32 FHFGKTCELENNEFVLCRQELNDPRKCITEGKAVTSCALSFFRKVKESCFDEFQVYANCV 91 (493)
Q Consensus 32 ~~~g~~C~~~n~~FmlCk~e~~dP~~CL~eG~~Vt~Ca~~~~~~i~~~C~~ef~~~~~Cl 91 (493)
+...++|-++-.+||.| .+|...|+- ++.|..+++.|.+||
T Consensus 27 ~~~~~RC~~FE~e~i~C-----------~~~~G~~r~--------kKeC~~e~EDy~ECl 67 (96)
T PF10200_consen 27 YKQPSRCHPFEKEWIEC-----------AEAYGQTRG--------KKECKLELEDYYECL 67 (96)
T ss_pred CCCCCchHHHHHHHHHH-----------HHHHcccch--------hhhchhHHhHHHHHH
No 16
>KOG4149|consensus
Probab=33.45 E-value=49 Score=30.38 Aligned_cols=40 Identities=25% Similarity=0.442 Sum_probs=35.2
Q ss_pred HHhhcHHHHHHHHhhhccCCCCcccccCchhhHHHHHHHH
Q psy16482 76 VKESCFDEFQVYANCVDKSSTNFDLTPCRNTQAVFDKCMN 115 (493)
Q Consensus 76 i~~~C~~ef~~~~~Cld~~~~~~~~~~CRk~q~~~~~C~~ 115 (493)
+...|+.+|++...|.-+|-....-..|-++=.+|-.||.
T Consensus 66 ~a~pCG~eFreA~sCf~~s~~e~kg~dC~~qf~a~~~C~q 105 (129)
T KOG4149|consen 66 VAGPCGEEFREAFSCFKYSDTEPKGGDCVKQFVAMQECMQ 105 (129)
T ss_pred ccCccHHHHHHHHhhccccCCCcCccchHHHHHHHHHHHH
Confidence 4567999999999999998776677889999999999998
No 17
>KOG3057|consensus
Probab=32.99 E-value=34 Score=30.73 Aligned_cols=36 Identities=25% Similarity=0.718 Sum_probs=30.6
Q ss_pred HHHhhcHHHHHHHHhhhccCCCCcccccCchhhHHHHH
Q psy16482 75 KVKESCFDEFQVYANCVDKSSTNFDLTPCRNTQAVFDK 112 (493)
Q Consensus 75 ~i~~~C~~ef~~~~~Cld~~~~~~~~~~CRk~q~~~~~ 112 (493)
.-..+|-.-+.+|+.|++.+.. ++..|-+-|..+..
T Consensus 53 nqtrhCf~~y~dyhrC~~~~ge--D~~~Ck~f~~~y~S 88 (112)
T KOG3057|consen 53 NQTRHCFQRYVDYHRCIKAKGE--DANPCKKFQKVYRS 88 (112)
T ss_pred chhHHHHHHHHHHHHHHHHhcc--cchhHHHHHHHHHH
Confidence 4567899999999999999754 78899999988864
No 18
>PF02320 UCR_hinge: Ubiquinol-cytochrome C reductase hinge protein; InterPro: IPR023184 The ubiquinol-cytochrome C reductase complex (cytochrome bc1 complex) is a respiratory multienzyme complex []. The bc1 complex contains 11 subunits; 3 respiratory subunits (cytochrome B, cytochrome C1, Rieske protein), 2 core proteins and 6 low molecular weight proteins. This family represents the 'hinge' protein of the complex which is thought to mediate formation of the cytochrome c1 and cytochrome c complex. Proteins in this entry from an alpha-helical hairpin. This entry represents the structural domain found in these proteins.; PDB: 1BCC_H 1SQP_H 1SQB_H 1BE3_H 2A06_U 1L0L_H 2BCC_H 2FYU_H 1PPJ_U 2YBB_H ....
Probab=29.89 E-value=31 Score=28.02 Aligned_cols=36 Identities=25% Similarity=0.558 Sum_probs=22.6
Q ss_pred hHHhCcchhhhHHHHHHH--HHhhcHHHHHHHHhhhcc
Q psy16482 58 CITEGKAVTSCALSFFRK--VKESCFDEFQVYANCVDK 93 (493)
Q Consensus 58 CL~eG~~Vt~Ca~~~~~~--i~~~C~~ef~~~~~Cld~ 93 (493)
|.+.-..--+|+-.+=.+ =+++|.+||-.|++|+|.
T Consensus 17 C~~~~~~y~~C~eRV~~~~~~~e~C~ee~fd~~hCvD~ 54 (65)
T PF02320_consen 17 CAKLKHHYDECVERVNSRSETKEDCVEEYFDLVHCVDH 54 (65)
T ss_dssp HHHHHHHHHHHHHHHHHCSSSSG-SHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHHHH
Confidence 444444445555555444 347899999999999885
No 19
>smart00071 Galanin Galanin. Galanin [1,2,3] is a neuropeptide that controls various biological activities: it regulates the release growth hormone, inhibits the release of insulin and somatostatin, contracts smooth muscle of the gastrointestinal and genitourinary tract and may be involved in the control of adrenal secretion
Probab=26.78 E-value=1e+02 Score=26.90 Aligned_cols=68 Identities=15% Similarity=0.181 Sum_probs=47.7
Q ss_pred HHHhcCCCCCCCCcccCccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccchhHHHHHHHhcc
Q psy16482 114 MNDKLGIDRPVYNYFLRPFVHDSNRPKPKPSDPLVFSGVPKKLDDNEPRTPAKYGGRNHGAFTVIMFYYLRP 185 (493)
Q Consensus 114 ~~~~l~~~r~~~g~~~~~~~~~~~rp~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (493)
++||=||.--.-||+-.|+-.+..|....+..-. ..+ .+|++.+.+|+-++...--.-.+.+++-+..
T Consensus 8 ~KeKRgwtlnsagyllgp~aid~hrs~~dk~g~~--gKR--El~pEde~r~g~~~r~l~e~~~vrTiiEFLs 75 (103)
T smart00071 8 VKEKRGWTLNSAGYLLGPHAIDNHRSFHDKHGLT--GKR--ELEPEDEARPGSFDRPLSESNIVRTIIEFLT 75 (103)
T ss_pred cccccCceeccCceeeCccccccccccccCCCcc--ccc--cCChhhhcccCccCCcCchhhHHHHHHHHHH
Confidence 5789999999999999999988888777533222 222 2555667888877777766666665554443
No 20
>KOG4763|consensus
Probab=24.64 E-value=44 Score=27.84 Aligned_cols=18 Identities=33% Similarity=0.763 Sum_probs=15.7
Q ss_pred HHhhcHHHHHHHHhhhcc
Q psy16482 76 VKESCFDEFQVYANCVDK 93 (493)
Q Consensus 76 i~~~C~~ef~~~~~Cld~ 93 (493)
-.++|-.|+-.||+|+|+
T Consensus 49 tee~Ct~e~fDy~h~~Dh 66 (77)
T KOG4763|consen 49 TEEHCTGEYFDYWHCLDH 66 (77)
T ss_pred cchhhHHHHHHHHHHHHH
Confidence 357899999999999996
No 21
>KOG1924|consensus
Probab=23.25 E-value=1.1e+02 Score=36.21 Aligned_cols=7 Identities=43% Similarity=0.714 Sum_probs=3.9
Q ss_pred ccccccC
Q psy16482 348 WQTIGFQ 354 (493)
Q Consensus 348 W~~IGFQ 354 (493)
=...||-
T Consensus 838 a~afgF~ 844 (1102)
T KOG1924|consen 838 AQAFGFN 844 (1102)
T ss_pred chhhccc
Confidence 3456664
No 22
>KOG4618|consensus
Probab=23.21 E-value=54 Score=27.25 Aligned_cols=32 Identities=22% Similarity=0.696 Sum_probs=14.4
Q ss_pred cHHHHHHHHhhhccCCCCcccccCchhhHHHHHH
Q psy16482 80 CFDEFQVYANCVDKSSTNFDLTPCRNTQAVFDKC 113 (493)
Q Consensus 80 C~~ef~~~~~Cld~~~~~~~~~~CRk~q~~~~~C 113 (493)
|..|-++-.+|||.|| ++-++|-.-=.++..|
T Consensus 24 Cl~es~aSfkCLeenn--yDRsKCq~yFd~YkeC 55 (74)
T KOG4618|consen 24 CLLESSASFKCLEENN--YDRSKCQDYFDVYKEC 55 (74)
T ss_pred HHHHHHHHHHHHHhcC--ccHHHHHHHHHHHHHH
Confidence 4444455555555532 3344444444444444
No 23
>PF06747 CHCH: CHCH domain; InterPro: IPR010625 A conserved motif was identified in the LOC118487 protein was called the CHCH motif. Alignment of this protein with related members showed the presence of three subgroups of proteins, which are called the S (Small), N (N-terminal extended) and C (C-terminal extended) subgroups. All three sub-groups of proteins have in common that they contain a predicted conserved [coiled coil 1]-[helix 1]-[coiled coil 2]-[helix 2] domain (CHCH domain). Within each helix of the CHCH domain, there are two cysteines present in a C-X9-C motif. The N-group contains an additional double helix domain, and each helix contains the C-X9-C motif. This family contains a number of characterised proteins: Cox19 protein - a nuclear gene of Saccharomyces cerevisiae, codes for an 11 kDa protein (Cox19p) required for expression of cytochrome oxidase. Because cox19 mutants are able to synthesise the mitochondrial and nuclear gene products of cytochrome oxidase, Cox19p probably functions post-translationally during assembly of the enzyme. Cox19p is present in the cytoplasm and mitochondria, where it exists as a soluble intermembrane protein. This dual location is similar to what was previously reported for Cox17p, a low molecular weight copper protein thought to be required for maturation of the CuA centre of subunit 2 of cytochrome oxidase. Cox19p have four conserved potential metal ligands, these are three cysteines and one histidine. Mrp10 - belongs to the class of yeast mitochondrial ribosomal proteins that are essential for translation []. Eukaryotic NADH-ubiquinone oxidoreductase 19 kDa (NDUFA8) subunit []. The CHCH domain was previously called DUF657 []. ; PDB: 2ZXT_A 3A3C_A 2L0Y_A 2K3J_A.
Probab=21.93 E-value=25 Score=24.22 Aligned_cols=31 Identities=35% Similarity=0.530 Sum_probs=18.5
Q ss_pred chhhhhhhhcccCcCCC-cchhHHhCcchhhh
Q psy16482 38 CELENNEFVLCRQELND-PRKCITEGKAVTSC 68 (493)
Q Consensus 38 C~~~n~~FmlCk~e~~d-P~~CL~eG~~Vt~C 68 (493)
|..+..+||.|=.++++ ..+|-++-++--.|
T Consensus 1 C~~e~~~~~~Cl~~n~~~~~~C~~~~~~~~~C 32 (35)
T PF06747_consen 1 CAEEMKAYLACLKENNFDWSKCRKEFKAYKEC 32 (35)
T ss_dssp THHHHHHHHHHHHCH-SSTCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCcHHhhHHHHHHHHHH
Confidence 66777888888777754 55555444443333
Done!