Query psy16482
Match_columns 493
No_of_seqs 300 out of 540
Neff 5.3
Searched_HMMs 29240
Date Fri Aug 16 22:26:24 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16482.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16482hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lql_A Coiled-coil-helix-coile 99.9 1.5E-29 5.1E-34 222.0 1.5 100 25-126 2-105 (113)
2 2lql_A Coiled-coil-helix-coile 83.7 0.48 1.6E-05 41.1 2.2 44 72-116 7-50 (113)
3 2lqt_A Coiled-coil-helix-coile 50.9 3.7 0.00013 33.9 0.4 35 80-116 16-50 (85)
4 2zxt_A Maltose-binding peripla 40.3 16 0.00053 37.7 3.2 38 79-116 406-443 (465)
5 2k3j_A Mitochondrial intermemb 37.4 23 0.00079 31.9 3.4 59 59-119 48-107 (146)
6 1v54_H AED, cytochrome C oxida 35.2 21 0.0007 29.4 2.5 34 77-112 26-62 (85)
7 1ei0_A P8MTCP1; helix-turn-hel 33.9 37 0.0013 23.7 3.3 35 79-115 2-36 (38)
8 1m1j_B Fibrinogen beta chain; 20.5 1.4E+02 0.0048 31.6 6.3 15 366-380 296-310 (464)
9 2lhu_A Mybpc3 protein; cardiac 19.7 19 0.00064 31.6 -0.5 29 329-365 83-111 (124)
10 2lqt_A Coiled-coil-helix-coile 17.0 1.1E+02 0.0037 25.2 3.4 38 53-93 13-50 (85)
No 1
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=99.95 E-value=1.5e-29 Score=221.99 Aligned_cols=100 Identities=16% Similarity=0.384 Sum_probs=74.8
Q ss_pred hhHhhhchHhhhhchhhhhhhhcccC--cCCCcchhHHhCcchhhhHHH--HHHHHHhhcHHHHHHHHhhhccCCCCccc
Q psy16482 25 AALKAGAFHFGKTCELENNEFVLCRQ--ELNDPRKCITEGKAVTSCALS--FFRKVKESCFDEFQVYANCVDKSSTNFDL 100 (493)
Q Consensus 25 a~L~aaa~~~g~~C~~~n~~FmlCk~--e~~dP~~CL~eG~~Vt~Ca~~--~~~~i~~~C~~ef~~~~~Cld~~~~~~~~ 100 (493)
+.|.||++++|++|..+|++||+|+. |++||++||+||++||+||.+ +|++|+++|.+||++||+||++|++ ++
T Consensus 2 ~~l~aa~~~vak~C~~~~~~f~~C~~~~~~~dp~~Cl~eg~~vt~Ca~~~p~~~~I~~~C~~ef~~y~~CL~~n~~--~~ 79 (113)
T 2lql_A 2 SHMQAALEVTARYCGRELEQYGQCVAAKPESWQRDCHYLKMSIAQCTSSHPIIRQIRQACAQPFEAFEECLRQNEA--AV 79 (113)
T ss_dssp ------------CCHHHHHHHHHHHHHCTTHHHHTCSHHHHHHHHHHHTCCCCHHHHHHTHHHHHHHHHHHHHCTT--CT
T ss_pred cHHHHHHHHHHHHccHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHhHHHHHHHHHHHHHccc--cH
Confidence 57899999999999999999999964 567899999999999999999 9999999999999999999999876 56
Q ss_pred ccCchhhHHHHHHHHHhcCCCCCCCC
Q psy16482 101 TPCRNTQAVFDKCMNDKLGIDRPVYN 126 (493)
Q Consensus 101 ~~CRk~q~~~~~C~~~~l~~~r~~~g 126 (493)
..||++|++|++|+.+++++++|..+
T Consensus 80 ~~Cr~~~~~f~~Cae~v~~~~~p~~~ 105 (113)
T 2lql_A 80 GNCAEHMRRFLQCAEQVQPPRSPATV 105 (113)
T ss_dssp TTCCSHHHHHHHHHTTC---------
T ss_pred HHHHHHHHHHHHHHHHhccccCCCCc
Confidence 78999999999999999999998855
No 2
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=83.70 E-value=0.48 Score=41.15 Aligned_cols=44 Identities=16% Similarity=0.371 Sum_probs=30.2
Q ss_pred HHHHHHhhcHHHHHHHHhhhccCCCCcccccCchhhHHHHHHHHH
Q psy16482 72 FFRKVKESCFDEFQVYANCVDKSSTNFDLTPCRNTQAVFDKCMND 116 (493)
Q Consensus 72 ~~~~i~~~C~~ef~~~~~Cld~~~~~~~~~~CRk~q~~~~~C~~~ 116 (493)
.+..|-++|.++|.+|..|...+..+ +-..|.+++.+..+|+.+
T Consensus 7 a~~~vak~C~~~~~~f~~C~~~~~~~-dp~~Cl~eg~~vt~Ca~~ 50 (113)
T 2lql_A 7 ALEVTARYCGRELEQYGQCVAAKPES-WQRDCHYLKMSIAQCTSS 50 (113)
T ss_dssp -------CCHHHHHHHHHHHHHCTTH-HHHTCSHHHHHHHHHHHT
T ss_pred HHHHHHHHccHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHHHhc
Confidence 34567788999999999998654322 466799999999999764
No 3
>2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens}
Probab=50.85 E-value=3.7 Score=33.91 Aligned_cols=35 Identities=20% Similarity=0.558 Sum_probs=26.0
Q ss_pred cHHHHHHHHhhhccCCCCcccccCchhhHHHHHHHHH
Q psy16482 80 CFDEFQVYANCVDKSSTNFDLTPCRNTQAVFDKCMND 116 (493)
Q Consensus 80 C~~ef~~~~~Cld~~~~~~~~~~CRk~q~~~~~C~~~ 116 (493)
|.+|=++-.+||+.|+ ++-..|-.-=.++..|-..
T Consensus 16 C~~e~~~S~kCL~~n~--yDr~~C~~yF~~Yk~CKk~ 50 (85)
T 2lqt_A 16 CLSESDASTRCLDENN--YDRERCSTYFLRYKNCRRF 50 (85)
T ss_dssp CHHHHHHHHHHHHHTT--TCTTTTHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcC--ccHHHHHHHHHHHHHHHHH
Confidence 8888888888888865 3566788877778888553
No 4
>2zxt_A Maltose-binding periplasmic protein, linker, MITO intermembrane space import AND...; disulfide bond, alpha helix, fusion, sugar transport; HET: MAL; 3.00A {Escherichia coli}
Probab=40.29 E-value=16 Score=37.69 Aligned_cols=38 Identities=18% Similarity=0.361 Sum_probs=34.7
Q ss_pred hcHHHHHHHHhhhccCCCCcccccCchhhHHHHHHHHH
Q psy16482 79 SCFDEFQVYANCVDKSSTNFDLTPCRNTQAVFDKCMND 116 (493)
Q Consensus 79 ~C~~ef~~~~~Cld~~~~~~~~~~CRk~q~~~~~C~~~ 116 (493)
.|.++|++...|.-+|+.+..-..|.++=.+|..||.+
T Consensus 406 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 443 (465)
T 2zxt_A 406 PCGEEFKSAFSCFVYSEAEPKGIDCVEKFQHMQDCFRK 443 (465)
T ss_dssp TTHHHHHHHHHHHHHCCSSSTTGGGHHHHHHHHHHHTT
T ss_pred CchHHHHHHHHhhhcCccccccchHHHHHHHHHHHHHH
Confidence 69999999999999988777778999999999999983
No 5
>2k3j_A Mitochondrial intermembrane space import and assembly protein 40; alpha-hairpin fold, coiled coil-helix-coiled coil-helix domain; NMR {Homo sapiens} PDB: 2l0y_A
Probab=37.36 E-value=23 Score=31.91 Aligned_cols=59 Identities=15% Similarity=0.396 Sum_probs=44.4
Q ss_pred HHhCcchhhhHHHHHHHH-HhhcHHHHHHHHhhhccCCCCcccccCchhhHHHHHHHHHhcC
Q psy16482 59 ITEGKAVTSCALSFFRKV-KESCFDEFQVYANCVDKSSTNFDLTPCRNTQAVFDKCMNDKLG 119 (493)
Q Consensus 59 L~eG~~Vt~Ca~~~~~~i-~~~C~~ef~~~~~Cld~~~~~~~~~~CRk~q~~~~~C~~~~l~ 119 (493)
+..|.-=-.| .-+..| ...|+++|++...|.-++..+..-..|-++=.+|-.||.++=.
T Consensus 48 ~p~GeINwdC--PClggma~GPCG~eFreAfsCF~~S~~e~Kg~dC~e~F~~mq~Cm~~~P~ 107 (146)
T 2k3j_A 48 LPNGNINWNC--PCLGGMASGPCGEQFKSAFSCFHYSTEEIKGSDCVDQFRAMQECMQKYPD 107 (146)
T ss_dssp CTTSSBCTTS--HHHHHHTSSSTHHHHHHHHHHHHHHCCSSTTTTTHHHHHHHHHHHHHCSS
T ss_pred CCCCceeecC--CcccccCCCCcHHHHHHHHHhhccCccccccchHHHHHHHHHHHHHHChH
Confidence 4455555555 445554 4569999999999987777666678899999999999996533
No 6
>1v54_H AED, cytochrome C oxidase polypeptide VIB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.51.1.1 PDB: 1oco_H* 1occ_H* 1ocz_H* 1ocr_H* 1v55_H* 2dyr_H* 2dys_H* 2eij_H* 2eik_H* 2eil_H* 2eim_H* 2ein_H* 2occ_H* 2ybb_S* 2zxw_H* 3abk_H* 3abl_H* 3abm_H* 3ag1_H* 3ag2_H* ...
Probab=35.25 E-value=21 Score=29.36 Aligned_cols=34 Identities=15% Similarity=0.571 Sum_probs=26.6
Q ss_pred HhhcHHHHHHHHhh---hccCCCCcccccCchhhHHHHH
Q psy16482 77 KESCFDEFQVYANC---VDKSSTNFDLTPCRNTQAVFDK 112 (493)
Q Consensus 77 ~~~C~~ef~~~~~C---ld~~~~~~~~~~CRk~q~~~~~ 112 (493)
.++|-.-+++|+.| ||.++. +...|.+..+.|.+
T Consensus 26 ~k~Cw~~y~df~~C~~~l~~~ge--d~~~C~~~~~~y~s 62 (85)
T 1v54_H 26 TRNCWQNYLDFHRCEKAMTAKGG--DVSVCEWYRRVYKS 62 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTC--CGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC--chHHHHHHHHHHHH
Confidence 47899999999999 555654 56789999988865
No 7
>1ei0_A P8MTCP1; helix-turn-helix, disulfide bridges, cell cycle; NMR {Synthetic} SCOP: j.77.1.1
Probab=33.91 E-value=37 Score=23.69 Aligned_cols=35 Identities=17% Similarity=0.392 Sum_probs=29.0
Q ss_pred hcHHHHHHHHhhhccCCCCcccccCchhhHHHHHHHH
Q psy16482 79 SCFDEFQVYANCVDKSSTNFDLTPCRNTQAVFDKCMN 115 (493)
Q Consensus 79 ~C~~ef~~~~~Cld~~~~~~~~~~CRk~q~~~~~C~~ 115 (493)
.|..+-.+.-.||..|+. +.++|...=.++.+|=.
T Consensus 2 pC~~~a~a~q~CL~~n~~--d~skCq~~id~l~~Cc~ 36 (38)
T 1ei0_A 2 PCQKQAAEIQKCLQANSY--LESKCQAVIQELKKCAA 36 (38)
T ss_dssp CSHHHHHHHHHHHHHTTT--CGGGTHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHCCC--cHHHHHHHHHHHHHHHh
Confidence 488888899999999764 67889999888888854
No 8
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=20.54 E-value=1.4e+02 Score=31.61 Aligned_cols=15 Identities=20% Similarity=0.118 Sum_probs=11.6
Q ss_pred hhhhHhhHHHHHhhC
Q psy16482 366 GILGLDNLLHFASEY 380 (493)
Q Consensus 366 GlLGL~nLlyF~~~~ 380 (493)
=.|||++|..+....
T Consensus 296 fWLGle~ih~LT~~~ 310 (464)
T 1m1j_B 296 YWLGNDKISQLTKIG 310 (464)
T ss_dssp EECCHHHHHHHHTTS
T ss_pred eEecccceeeccCCC
Confidence 368999999888643
No 9
>2lhu_A Mybpc3 protein; cardiac, structural protein; NMR {Mus musculus}
Probab=19.69 E-value=19 Score=31.58 Aligned_cols=29 Identities=38% Similarity=0.846 Sum_probs=23.5
Q ss_pred HHHHHhCCCCCCCccccccccccccCCCCCCCccccc
Q psy16482 329 RLWQMLKPDVPLNSRVTKQWQTIGFQGDDPKTDFRGM 365 (493)
Q Consensus 329 ~Lw~~l~p~~~~~~r~s~~W~~IGFQg~DP~TDFRG~ 365 (493)
++|.+|....+ ++.+.|-||- =.||||||
T Consensus 83 dvWElL~~A~p------kdYEkIAf~Y--GITDlRGM 111 (124)
T 2lhu_A 83 DVWEILRQAPP------SEYERIAFQH--GVTDLRGM 111 (124)
T ss_dssp CHHHHHTTSCG------GGHHHHHHHT--TCCCHHHH
T ss_pred HHHHHHccCCc------chHHHHHHHh--CcHHHHHH
Confidence 79999986543 6888898886 59999986
No 10
>2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens}
Probab=17.03 E-value=1.1e+02 Score=25.23 Aligned_cols=38 Identities=32% Similarity=0.550 Sum_probs=30.6
Q ss_pred CCcchhHHhCcchhhhHHHHHHHHHhhcHHHHHHHHhhhcc
Q psy16482 53 NDPRKCITEGKAVTSCALSFFRKVKESCFDEFQVYANCVDK 93 (493)
Q Consensus 53 ~dP~~CL~eG~~Vt~Ca~~~~~~i~~~C~~ef~~~~~Cld~ 93 (493)
-|| |++|..+-.+|-.+---+ +..|.+-|++|-+|-..
T Consensus 13 ~nP--C~~e~~~S~kCL~~n~yD-r~~C~~yF~~Yk~CKk~ 50 (85)
T 2lqt_A 13 INP--CLSESDASTRCLDENNYD-RERCSTYFLRYKNCRRF 50 (85)
T ss_dssp -CC--CHHHHHHHHHHHHHTTTC-TTTTHHHHHHHHHHHHH
T ss_pred CCc--cHHHHHHHHHHHHHcCcc-HHHHHHHHHHHHHHHHH
Confidence 466 999999999997665444 77899999999999653
Done!