RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16482
(493 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 68.9 bits (168), Expect = 2e-12
Identities = 88/515 (17%), Positives = 155/515 (30%), Gaps = 163/515 (31%)
Query: 2 VLTHNF--SLPT-YEELEQEEVPLSSAALKAGAFHFGKTCELENNEFVLCRQELNDPRKC 58
L F LP E ++ P + A L F L +V L +P
Sbjct: 32 QLQEQFNKILPEPTEGFAADDEPTTPAELVG---KF-----LG---YV---SSLVEP-SK 76
Query: 59 ITEGKAVTSCALSFFRKVKESCF---DEFQVYANCVDKSSTNFDLTPCRNTQAVFDKCMN 115
+ + V + L+ F E+C+ ++ A + + + T T+ +
Sbjct: 77 VGQFDQVLNLCLTEF----ENCYLEGNDIHALAAKLLQEND----TTLVKTKEL------ 122
Query: 116 DKLGIDRPVYNYFLRPFVHDSNRPKPKPSDPLVFSGVPKKLDDNEPRTPAKYGGRNHGAF 175
+ NY + + RP K S+ +F V + + A +GG+ G
Sbjct: 123 --------IKNYITARIM--AKRPFDKKSNSALFRAV----GEGNAQLVAIFGGQ--GNT 166
Query: 176 TVIMFYY--LRPVWYSVYFSYVRPLFKWILRKTTRLCELQRI------CYGEN------- 220
Y+ LR + Y Y V L K L EL R + +
Sbjct: 167 DD---YFEELRDL-YQTYHVLVGDLIK---FSAETLSELIRTTLDAEKVFTQGLNILEWL 219
Query: 221 HGARRSLGVEYSLSHSRRYELQELIKFLNKMAVERKL---HGNGLMMSVKGSVDTILLVK 277
+ +Y LS L +I+ + + + L G L +KG+
Sbjct: 220 ENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE-LRSYLKGA-------- 270
Query: 278 KINPTVHV----------------SFVKAISRCIE---HIWGYR--QLKQEITL-LARTQ 315
T H SF ++ + I I G R + +L + +
Sbjct: 271 ----TGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI-GVRCYEAYPNTSLPPSILE 325
Query: 316 YDAENAE------------HEEKLLRLWQMLKPDVPLNSRVTKQWQTIG-FQGDD----- 357
EN E +E++ +P +V I G
Sbjct: 326 DSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQV-----EISLVNGAKNLVVS 380
Query: 358 --PKTDFRGMGIL-GLDNLLHFASEYPTTAQHVLQHSL-HPQYGYAFAIVGINLTSLAYH 413
P++ L GL+ L A Q + S ++ F V + +H
Sbjct: 381 GPPQS-------LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPV-----ASPFH 428
Query: 414 ----------LFQDDAAKTIVYNSCKSLPSINVFH 438
+ +D + +N+ K + I V+
Sbjct: 429 SHLLVPASDLINKDLVKNNVSFNA-KDI-QIPVYD 461
Score = 31.6 bits (71), Expect = 0.86
Identities = 35/203 (17%), Positives = 59/203 (29%), Gaps = 70/203 (34%)
Query: 224 RRSLGVEYSLSHSRRYELQELIKFLNKMAVERKLHGNGLMMSVKGSVDTILLVKKINPTV 283
+ + G +S+ L +++ N M + VD L +KI +
Sbjct: 1654 KDTYG--FSILDIVINNPVNLT-IHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEI 1710
Query: 284 HVSFVKAISRCIEHIWGYRQLKQEITLLARTQYDAENAEHEEKLLRLWQMLKPDVPLNSR 343
+ + S E LL+ TQ Q P + L +
Sbjct: 1711 N---EHSTSYTFRS---------EKGLLSATQ----FT----------Q---PALTLMEK 1741
Query: 344 VTKQWQTIGFQGDDPKTDFRGMGILGLDNLLHFASEYPTTAQHVLQHSLHPQYG-YAFAI 402
++ + +G P FA HSL G YA A
Sbjct: 1742 A--AFEDLKSKGLIPADAT-------------FAG-----------HSL----GEYA-A- 1769
Query: 403 VGINLTSLAYHLFQDDAAKTIVY 425
L SLA + + + +V+
Sbjct: 1770 ----LASLADVMSIESLVE-VVF 1787
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.4 bits (135), Expect = 2e-08
Identities = 66/445 (14%), Positives = 111/445 (24%), Gaps = 150/445 (33%)
Query: 62 GKAVTSCALSFFRKVKESCFDEFQVY----ANCVDKSSTNFDLTPCRNTQAVFDKCMNDK 117
GK T AL K C +F+++ NC +S L + D N
Sbjct: 162 GK--TWVALDVCLSYKVQCKMDFKIFWLNLKNC---NSPETVLEMLQKLLYQIDP--NWT 214
Query: 118 LGIDRPVYNYFLRPFVHDSN-------RPKPKPSDPLVFSGVPKKLDDNEPRTPAKYGGR 170
D N LR +H + KP + LV L +
Sbjct: 215 SRSDHS-SNIKLR--IHSIQAELRRLLKSKPYENCLLV-------LLN------------ 252
Query: 171 NHGAFTVIMFYYLRPVWYSVYFSYVRPLFKWILRK---------TTRLCELQRICYGENH 221
V TTR ++
Sbjct: 253 ---------------VQN-----------AKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286
Query: 222 GARRSLGVEYSLSHSRRYELQELIKFLNKMAV----ERKLHGNGLMMSV-----KGSVDT 272
+L+ L L+K+L+ L N +S+ + + T
Sbjct: 287 THISLDHHSMTLTPDEVKSL--LLKYLD-CRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 273 ILLVKKINPTVHVSFVKAISRCIEHIWGYRQLKQEITLLARTQYDA-----ENAEHEEKL 327
K +N I + L+ R +D +A L
Sbjct: 344 WDNWKHVN---CDKLTTIIESSLN------VLEPAEY---RKMFDRLSVFPPSAHIPTIL 391
Query: 328 L-RLWQMLKPDVPLN--------SRVTKQWQTIGFQGDDPKTDFRGMGILGLDNL--LH- 375
L +W + + S V KQ + + + + L+N LH
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK----VKLENEYALHR 447
Query: 376 -FASEYPTTAQHVLQHSLHP---QYGYAFAIVGINLTSLAYHLFQDDAAKTIVYNSCKSL 431
Y + P QY Y+ + +HL + +
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSH---------IGHHLKNIEHPE---------- 488
Query: 432 PSINVFHHFYCYLFYEFDRVWMESK 456
+ +F + D ++E K
Sbjct: 489 -RMTLFRMVF------LDFRFLEQK 506
Score = 31.4 bits (70), Expect = 0.82
Identities = 27/121 (22%), Positives = 49/121 (40%), Gaps = 23/121 (19%)
Query: 217 YGENHGARRSLGVEYSLSHSRRYELQELIK--FLNKMAVERKLHGNGLMMSVKGSV-DTI 273
Y +H +G + L + E L + FL+ +E+K+ + + GS+ +T+
Sbjct: 472 YFYSH-----IG--HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524
Query: 274 LLVKK----I--NPTVHVSFVKAI----SRCIEHIW--GYRQLKQEITLLARTQYDAENA 321
+K I N + V AI + E++ Y L + I L+A + E A
Sbjct: 525 QQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLR-IALMAEDEAIFEEA 583
Query: 322 E 322
Sbjct: 584 H 584
>3di4_A Uncharacterized protein DUF1989; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; 1.60A {Silicibacter pomeroyi}
Length = 286
Score = 30.0 bits (66), Expect = 1.5
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 134 HDSNRPKPKPSDPLVFSGVPKKLDDNEPRTPAKYGGRNHG 173
H S+ P +F+ L D + Y +HG
Sbjct: 247 HSSDTASCHPLLVEIFAPAEGMLGDWPSPSVNGYDR-SHG 285
>3lje_A Zebrafish rnase5; angiogenins, FISH rnases, hydrolase; 1.80A {Danio
rerio}
Length = 130
Score = 27.2 bits (60), Expect = 6.3
Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 73 FRKVKESCFDEFQVYANCVDKSSTNFDLTPCRNT 106
++ C D N KS+ F + C+
Sbjct: 56 KDRITTVCGDAGTPVNNLF-KSNQPFPVVTCKLK 88
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.425
Gapped
Lambda K H
0.267 0.0576 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,555,588
Number of extensions: 450810
Number of successful extensions: 864
Number of sequences better than 10.0: 1
Number of HSP's gapped: 851
Number of HSP's successfully gapped: 11
Length of query: 493
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 396
Effective length of database: 3,993,456
Effective search space: 1581408576
Effective search space used: 1581408576
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (26.8 bits)