RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16482
         (493 letters)



>d1jbob_ a.1.1.3 (B:) Phycocyanin beta subunit {Synechococcus
           elongatus [TaxId: 32046]}
          Length = 172

 Score = 26.0 bits (57), Expect = 7.6
 Identities = 10/40 (25%), Positives = 12/40 (30%)

Query: 165 AKYGGRNHGAFTVIMFYYLRPVWYSVYFSYVRPLFKWILR 204
             Y  R   A    M   LR V Y++       L    L 
Sbjct: 72  NAYTNRRMAACLRDMEIILRYVTYAILAGDSSVLDDRCLN 111


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.137    0.425 

Gapped
Lambda     K      H
   0.267   0.0624    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,880,729
Number of extensions: 90841
Number of successful extensions: 204
Number of sequences better than 10.0: 1
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 3
Length of query: 493
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 404
Effective length of database: 1,185,626
Effective search space: 478992904
Effective search space used: 478992904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.2 bits)