Query psy16484
Match_columns 75
No_of_seqs 101 out of 133
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 22:28:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16484.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16484hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4231|consensus 99.9 3.3E-23 7.1E-28 158.4 6.1 74 1-74 657-730 (763)
2 cd07212 Pat_PNPLA9 Patatin-lik 99.7 1E-17 2.2E-22 120.6 4.7 61 2-63 248-312 (312)
3 cd07211 Pat_PNPLA8 Patatin-lik 99.5 5.1E-14 1.1E-18 100.2 6.2 60 3-62 249-308 (308)
4 cd07215 Pat17_PNPLA8_PNPLA9_li 99.3 2.9E-12 6.2E-17 92.3 6.7 64 10-73 261-329 (329)
5 cd07216 Pat17_PNPLA8_PNPLA9_li 98.7 2.5E-08 5.5E-13 71.2 4.9 55 3-59 249-308 (309)
6 cd07214 Pat17_isozyme_like Pat 98.3 6.8E-07 1.5E-11 65.4 4.7 58 10-67 282-345 (349)
7 cd07199 Pat17_PNPLA8_PNPLA9_li 97.6 0.00016 3.4E-09 50.3 5.8 37 23-59 220-257 (258)
8 cd07213 Pat17_PNPLA8_PNPLA9_li 97.5 0.00022 4.7E-09 50.7 5.2 45 11-58 240-284 (288)
9 KOG1384|consensus 86.4 0.62 1.3E-05 34.9 2.4 45 26-70 197-243 (348)
10 PF08368 FAST_2: FAST kinase-l 74.6 4.5 9.7E-05 24.2 2.9 25 13-37 52-76 (93)
11 PF05347 Complex1_LYR: Complex 72.8 5.3 0.00011 21.4 2.7 22 39-60 37-58 (59)
12 PF01434 Peptidase_M41: Peptid 72.6 10 0.00022 25.9 4.6 28 47-74 173-200 (213)
13 KOG4117|consensus 69.5 12 0.00027 21.9 3.8 34 41-74 7-40 (73)
14 PF02676 TYW3: Methyltransfera 66.2 18 0.00038 25.0 4.7 31 43-73 170-200 (205)
15 PF06296 DUF1044: Protein of u 63.1 26 0.00056 22.4 4.8 34 38-71 80-113 (120)
16 PF10512 Borealin: Cell divisi 57.9 19 0.0004 22.9 3.4 44 30-73 68-115 (116)
17 PRK04235 hypothetical protein; 56.3 33 0.00072 23.6 4.7 31 43-73 160-190 (196)
18 PF10888 DUF2742: Protein of u 56.2 47 0.001 20.7 5.0 24 38-61 33-56 (97)
19 PF10513 EPL1: Enhancer of pol 55.9 10 0.00023 24.4 2.1 48 24-73 100-157 (160)
20 TIGR01241 FtsH_fam ATP-depende 52.5 11 0.00025 28.6 2.1 30 45-74 451-480 (495)
21 PF13232 Complex1_LYR_1: Compl 49.4 31 0.00068 18.6 3.1 20 41-60 39-58 (61)
22 PF06531 DUF1108: Protein of u 49.4 31 0.00066 21.1 3.2 28 47-74 57-84 (86)
23 KOG2612|consensus 49.0 27 0.00058 21.7 3.0 37 35-71 3-39 (103)
24 KOG1228|consensus 45.7 64 0.0014 23.2 4.8 45 28-73 164-208 (256)
25 PF02021 UPF0102: Uncharacteri 45.4 28 0.00061 20.9 2.7 25 39-63 55-79 (93)
26 PRK00115 hemE uroporphyrinogen 43.5 88 0.0019 22.6 5.5 45 11-58 298-344 (346)
27 PRK10733 hflB ATP-dependent me 43.4 47 0.001 26.5 4.3 35 40-74 545-579 (644)
28 COG1590 Uncharacterized conser 42.7 64 0.0014 22.7 4.4 31 43-73 158-188 (208)
29 smart00120 HX Hemopexin-like r 42.0 18 0.0004 17.9 1.3 11 23-33 16-26 (45)
30 TIGR01463 mtaA_cmuA methyltran 41.9 77 0.0017 22.6 4.9 43 12-58 296-338 (340)
31 PRK14676 hypothetical protein; 41.9 34 0.00073 21.6 2.8 25 39-63 64-88 (117)
32 PRK14686 hypothetical protein; 41.7 36 0.00077 21.4 2.8 26 38-63 63-88 (119)
33 PF14777 BBIP10: Cilia BBSome 40.6 49 0.0011 19.2 3.0 47 17-63 7-59 (65)
34 KOG1150|consensus 39.2 11 0.00023 26.9 0.1 20 19-38 41-61 (250)
35 PF05527 DUF758: Domain of unk 39.1 28 0.00061 24.0 2.2 34 39-73 30-63 (186)
36 PRK14677 hypothetical protein; 38.5 42 0.0009 20.9 2.7 26 38-63 56-81 (107)
37 COG2900 SlyX Uncharacterized p 37.8 88 0.0019 18.5 4.3 29 46-74 25-53 (72)
38 smart00146 PI3Kc Phosphoinosit 37.4 27 0.00059 23.4 1.9 47 27-74 144-190 (202)
39 PRK12497 hypothetical protein; 37.2 40 0.00088 21.0 2.6 26 38-63 64-89 (119)
40 PF15391 DUF4614: Domain of un 37.0 21 0.00047 24.5 1.4 10 52-61 137-146 (181)
41 KOG3349|consensus 36.6 9.8 0.00021 25.9 -0.3 15 24-38 64-78 (170)
42 CHL00176 ftsH cell division pr 36.5 38 0.00082 27.2 2.8 30 45-74 580-609 (638)
43 PHA02843 hypothetical protein; 36.0 30 0.00064 20.0 1.6 23 11-34 15-37 (73)
44 PRK14684 hypothetical protein; 35.2 49 0.0011 20.9 2.7 25 39-63 65-89 (120)
45 cd07217 Pat17_PNPLA8_PNPLA9_li 33.0 36 0.00078 25.1 2.1 26 26-51 304-333 (344)
46 PRK14688 hypothetical protein; 33.0 55 0.0012 20.7 2.7 25 39-63 65-89 (121)
47 PRK14679 hypothetical protein; 32.3 68 0.0015 20.6 3.1 26 38-63 71-96 (128)
48 PRK14678 hypothetical protein; 32.2 76 0.0017 20.0 3.3 25 39-63 62-86 (120)
49 PLN02624 ornithine-delta-amino 31.4 1.8E+02 0.004 22.0 5.7 39 25-70 415-453 (474)
50 PF13815 Dzip-like_N: Iguana/D 31.3 1.3E+02 0.0029 18.6 6.1 61 7-69 16-81 (118)
51 PF07795 DUF1635: Protein of u 31.2 1E+02 0.0022 21.8 4.0 27 47-73 16-42 (214)
52 PRK14689 hypothetical protein; 31.0 67 0.0014 20.6 2.8 25 39-63 68-92 (124)
53 PF12236 Head-tail_con: Bacter 30.8 1.8E+02 0.0039 22.1 5.6 18 17-34 59-77 (480)
54 KOG2706|consensus 30.6 85 0.0018 24.0 3.7 53 9-62 162-223 (476)
55 TIGR00252 conserved hypothetic 29.7 69 0.0015 20.2 2.8 24 39-62 65-88 (119)
56 PRK14680 hypothetical protein; 29.6 80 0.0017 20.4 3.1 25 39-63 65-89 (134)
57 PRK14682 hypothetical protein; 29.3 83 0.0018 19.8 3.1 25 39-63 64-88 (117)
58 KOG0731|consensus 29.2 45 0.00098 27.7 2.2 34 41-74 699-732 (774)
59 PF11176 DUF2962: Protein of u 28.3 1.2E+02 0.0026 19.9 3.8 30 42-71 62-91 (155)
60 PF05135 Phage_connect_1: Phag 27.5 1.1E+02 0.0023 17.6 3.2 21 41-61 17-37 (101)
61 KOG3067|consensus 27.2 44 0.00096 23.6 1.6 18 17-34 73-90 (226)
62 COG0792 Predicted endonuclease 26.9 75 0.0016 20.2 2.5 25 39-63 61-85 (114)
63 PRK14674 hypothetical protein; 26.1 88 0.0019 20.2 2.8 25 39-63 64-88 (133)
64 PF08159 NUC153: NUC153 domain 25.9 28 0.00062 17.1 0.4 18 29-46 3-21 (30)
65 PF09551 Spore_II_R: Stage II 25.4 1.2E+02 0.0025 19.8 3.3 21 53-73 44-64 (130)
66 PF13958 ToxN_toxin: Toxin Tox 25.0 1.8E+02 0.0039 19.3 4.2 36 38-73 97-132 (161)
67 PRK14673 hypothetical protein; 25.0 94 0.002 20.3 2.8 25 39-63 86-110 (137)
68 KOG2608|consensus 24.5 44 0.00095 26.2 1.3 26 3-29 36-69 (469)
69 cd08054 gp6 Head-Tail Connecto 24.3 1.4E+02 0.0031 16.7 3.3 20 42-61 14-33 (91)
70 TIGR03090 SASP_tlp small, acid 24.2 1.4E+02 0.0031 17.5 3.2 23 46-68 11-33 (70)
71 PHA00725 hypothetical protein 23.9 31 0.00067 20.8 0.3 12 23-34 16-27 (81)
72 PF04065 Not3: Not1 N-terminal 23.9 66 0.0014 22.8 2.0 24 41-64 192-215 (233)
73 PF00045 Hemopexin: Hemopexin; 23.7 53 0.0012 16.5 1.2 11 23-33 16-26 (45)
74 smart00309 PAH Pancreatic horm 23.7 1.2E+02 0.0026 15.5 3.0 23 38-60 7-29 (36)
75 PRK03830 small acid-soluble sp 23.6 1.5E+02 0.0033 17.5 3.2 22 46-67 12-33 (73)
76 PF07369 DUF1488: Protein of u 23.1 1.5E+02 0.0033 16.8 3.2 21 54-74 50-70 (83)
77 PRK02877 hypothetical protein; 22.0 39 0.00085 21.1 0.5 19 39-57 53-71 (106)
78 PRK14683 hypothetical protein; 21.9 1.4E+02 0.003 19.0 3.1 24 40-63 69-92 (122)
79 PF05484 LRV_FeS: LRV protein 21.6 6.2 0.00013 22.4 -2.9 11 26-36 45-55 (57)
80 PRK14681 hypothetical protein; 21.6 1.1E+02 0.0024 20.4 2.7 25 39-63 103-127 (158)
81 PF15136 UPF0449: Uncharacteri 21.4 2.2E+02 0.0047 17.7 4.6 34 39-73 43-76 (97)
82 PRK05749 3-deoxy-D-manno-octul 21.4 1.7E+02 0.0037 21.2 3.8 30 44-73 388-417 (425)
83 PRK14675 hypothetical protein; 21.3 1.6E+02 0.0034 18.7 3.3 26 38-63 66-91 (125)
84 PF13074 DUF3938: Protein of u 21.2 55 0.0012 19.9 1.0 14 21-34 21-34 (102)
85 PRK06252 methylcobalamin:coenz 21.2 2.6E+02 0.0056 19.9 4.7 43 12-58 294-336 (339)
86 PF01208 URO-D: Uroporphyrinog 21.0 1E+02 0.0022 21.8 2.6 32 24-58 312-343 (343)
87 PRK10353 3-methyl-adenine DNA 20.8 1.1E+02 0.0025 20.9 2.7 29 41-71 69-97 (187)
88 PF11275 DUF3077: Protein of u 20.8 79 0.0017 18.8 1.7 21 23-43 13-33 (79)
89 PRK14687 hypothetical protein; 20.6 1.2E+02 0.0025 20.8 2.6 25 39-63 94-118 (173)
90 PF00454 PI3_PI4_kinase: Phosp 20.5 26 0.00055 23.6 -0.6 52 23-74 172-226 (235)
No 1
>KOG4231|consensus
Probab=99.88 E-value=3.3e-23 Score=158.44 Aligned_cols=74 Identities=41% Similarity=0.640 Sum_probs=71.1
Q ss_pred CcchhccccccHHHHHHHHHhCCCCceEEecCCCCCCCCccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHhhc
Q psy16484 1 MVKILESATDTEGVHTCLSDLLPQGVYYRFNPYLSEVPDLDETRPEKLAQLRLDTDIYIRKNEAKFQAAINSKI 74 (75)
Q Consensus 1 ~~~vvdsatdte~v~~~~~~ll~~~~YfRfnP~l~~~i~LDe~~~~~L~~L~~~t~~Yi~~n~~~l~~~~~~Ll 74 (75)
|..+++||||||+||.++..|||+.+||||||+|...++|||+|+|+|.+|..++..||++|.++++++|+.|.
T Consensus 657 L~~~i~SatdtEevh~~l~~mLPe~~YfRFNPvm~~~~~LDE~d~e~l~ql~~~~e~yI~rN~qk~k~vaerL~ 730 (763)
T KOG4231|consen 657 LIESICSATDTEEVHSTLLPMLPEIQYFRFNPVMDRCMELDETDPEILLQLEAAIEEYIQRNPQKFKNVAERLT 730 (763)
T ss_pred HHHHHhcccchHHHHHhhhccCCchheEecchhhhcccCcCccCHHHHHHHHHHHHHHHHhChHHHHHHHHHhc
Confidence 35789999999999999999999999999999999899999999999999999999999999999999999885
No 2
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus.
Probab=99.71 E-value=1e-17 Score=120.61 Aligned_cols=61 Identities=30% Similarity=0.489 Sum_probs=56.1
Q ss_pred cchhccccccHHHHH----HHHHhCCCCceEEecCCCCCCCCccCCCHHHHHHHHHHHHHHHHHhH
Q psy16484 2 VKILESATDTEGVHT----CLSDLLPQGVYYRFNPYLSEVPDLDETRPEKLAQLRLDTDIYIRKNE 63 (75)
Q Consensus 2 ~~vvdsatdte~v~~----~~~~ll~~~~YfRfnP~l~~~i~LDe~~~~~L~~L~~~t~~Yi~~n~ 63 (75)
..+|++||+|+++|. .||+++ +.+||||||+++++++|||+++++|.+|+|+|+.||++|+
T Consensus 248 ~~~~~~~t~t~~~~~~~~~~~~~~~-~~~Y~Rfn~~l~~~~~lde~~~~~l~~l~~~~~~yi~~~~ 312 (312)
T cd07212 248 KMVVDQCTASDGAPVDRARAWCESI-GIPYFRFSPPLSKDIMLDETDDEDLVNMLWDTEVYIYTHR 312 (312)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHhc-CCceEEeCCccCCCcCCCcCCHHHHHHHHHHHHHHHHhcC
Confidence 357999999999887 578888 8899999999999999999999999999999999999884
No 3
>cd07211 Pat_PNPLA8 Patatin-like phospholipase domain containing protein 8. PNPLA8 is a Ca-independent myocardial phospholipase which maintains mitochondrial integrity. PNPLA8 is also known as iPLA2-gamma. In humans, it is predominantly expressed in heart tissue. iPLA2-gamma can catalyze both phospholipase A1 and A2 reactions (PLA1 and PLA2 respectively). This family includes PNPLA8 (iPLA2-gamma) from Homo sapiens and iPLA2-2 from Mus musculus.
Probab=99.49 E-value=5.1e-14 Score=100.19 Aligned_cols=60 Identities=63% Similarity=0.967 Sum_probs=56.5
Q ss_pred chhccccccHHHHHHHHHhCCCCceEEecCCCCCCCCccCCCHHHHHHHHHHHHHHHHHh
Q psy16484 3 KILESATDTEGVHTCLSDLLPQGVYYRFNPYLSEVPDLDETRPEKLAQLRLDTDIYIRKN 62 (75)
Q Consensus 3 ~vvdsatdte~v~~~~~~ll~~~~YfRfnP~l~~~i~LDe~~~~~L~~L~~~t~~Yi~~n 62 (75)
.++.++|++|.+|.++.+++++..||||||++..+++||+++++++++|++.|++|+.+|
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~Y~R~~~~~~~~~~ld~~~~~~i~~l~~~~~~yl~~~ 308 (308)
T cd07211 249 NLIDSATDTERVHTALDDLLPPDVYFRFNPVMSECVELDETRPEKLDQLQDDTLEYIKRN 308 (308)
T ss_pred HHHHHccChHHHHHHHHHhcCCCceEEecccccCCCCcccCCHHHHHHHHHHHHHHHhcC
Confidence 478899999999999999998899999999998779999999999999999999999886
No 4
>cd07215 Pat17_PNPLA8_PNPLA9_like2 Patatin-like phospholipase of bacteria. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=99.34 E-value=2.9e-12 Score=92.35 Aligned_cols=64 Identities=22% Similarity=0.433 Sum_probs=55.4
Q ss_pred ccHHHHHHHHHhC----CCCceEEecCCCCC-CCCccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q psy16484 10 DTEGVHTCLSDLL----PQGVYYRFNPYLSE-VPDLDETRPEKLAQLRLDTDIYIRKNEAKFQAAINSK 73 (75)
Q Consensus 10 dte~v~~~~~~ll----~~~~YfRfnP~l~~-~i~LDe~~~~~L~~L~~~t~~Yi~~n~~~l~~~~~~L 73 (75)
.++.++..+..++ ++..||||||++.. ..+||++++++++.|++.|+.|+++|+++|+++|+.|
T Consensus 261 ~~~~~d~~~~~l~~~~~~~~~Y~Ri~~~l~~~~~~lD~a~~~~i~~L~~~~~~~~~~~~~~i~~~~~~~ 329 (329)
T cd07215 261 ASQTVDYQLKQIFDAEGDQQQYLRIQPELEDADPEMDDASPENLEKLREVGQALAEDHKDQLDEIVDRL 329 (329)
T ss_pred hHHHHHHHHHHHHhhcCCCCceEEEeCCCCCCccccccCCHHHHHHHHHHHHHHHHHhHHHHHHHHHhC
Confidence 3556777777666 45789999999975 4789999999999999999999999999999999876
No 5
>cd07216 Pat17_PNPLA8_PNPLA9_like3 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=98.70 E-value=2.5e-08 Score=71.20 Aligned_cols=55 Identities=35% Similarity=0.404 Sum_probs=47.1
Q ss_pred chhccccccHHHHHHHHH----hCCCCceEEecCCCC-CCCCccCCCHHHHHHHHHHHHHHH
Q psy16484 3 KILESATDTEGVHTCLSD----LLPQGVYYRFNPYLS-EVPDLDETRPEKLAQLRLDTDIYI 59 (75)
Q Consensus 3 ~vvdsatdte~v~~~~~~----ll~~~~YfRfnP~l~-~~i~LDe~~~~~L~~L~~~t~~Yi 59 (75)
.+++++||++..|..+.. ++++..||||||++. ++++|||. +++..|...|+.|+
T Consensus 249 ~l~~~~~d~~~~~~~~~~~~~~~~~~~~Y~R~n~~~~~~~~~ld~~--~~~~~l~~~t~~yl 308 (309)
T cd07216 249 GLKDLVTDTEAEAKRFSAEHSELDEEGRYFRFNVPHGLEDVGLDEY--EKMEEIVSLTREYL 308 (309)
T ss_pred HHHHHhhChHHHHHHHHHHHhccCCCCeEEEECCCCCCCCCChhhh--ccHHHHHHHHHHhh
Confidence 478899999999986655 357889999999997 45899996 78999999999997
No 6
>cd07214 Pat17_isozyme_like Patatin-like phospholipase of plants. Pat17 is an isozyme of patatin cloned from Solanum cardiophyllum. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue, and Nu = nucleophile). Patatin-like phospholipase are included in this group. Members of this family have also been found in vertebrates.
Probab=98.35 E-value=6.8e-07 Score=65.37 Aligned_cols=58 Identities=17% Similarity=0.218 Sum_probs=47.6
Q ss_pred ccHHHHHHHHHhCC----CCceEEecCCCCC-C-CCccCCCHHHHHHHHHHHHHHHHHhHHHHH
Q psy16484 10 DTEGVHTCLSDLLP----QGVYYRFNPYLSE-V-PDLDETRPEKLAQLRLDTDIYIRKNEAKFQ 67 (75)
Q Consensus 10 dte~v~~~~~~ll~----~~~YfRfnP~l~~-~-i~LDe~~~~~L~~L~~~t~~Yi~~n~~~l~ 67 (75)
.++.++.++..+++ +..|+|++|.+.. . .+||++++++++.|+..|+.|+.+|...++
T Consensus 282 ~~~~~d~~~~~~~~~~~~~~~Y~Ri~~~~~~~~~~~~d~~~~~ni~~L~~~a~~~l~~~~~~~~ 345 (349)
T cd07214 282 SSDMVDYHLSVIFQALDSEKNYLRIQDDSLTGTASSVDDATEENLEKLVEIGKKLLKKPVSRVN 345 (349)
T ss_pred HHHHHHHHHHHHHHhcCCCCcEEEEecCCCCCcccCcccCCHHHHHHHHHHHHHHHhCcccccC
Confidence 35677778877773 4679999998653 3 689999999999999999999999886653
No 7
>cd07199 Pat17_PNPLA8_PNPLA9_like Patatin-like phospholipase; includes PNPLA8, PNPLA9, and Pat17. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=97.64 E-value=0.00016 Score=50.29 Aligned_cols=37 Identities=27% Similarity=0.307 Sum_probs=33.5
Q ss_pred CCCceEEecCCCCCCC-CccCCCHHHHHHHHHHHHHHH
Q psy16484 23 PQGVYYRFNPYLSEVP-DLDETRPEKLAQLRLDTDIYI 59 (75)
Q Consensus 23 ~~~~YfRfnP~l~~~i-~LDe~~~~~L~~L~~~t~~Yi 59 (75)
.+..||||||.+..+. .+|+++++++..|...+++|+
T Consensus 220 ~~~~y~R~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~ 257 (258)
T cd07199 220 SKDNYLRINPPLPGPIPALDDASEANLLALDSAAFELI 257 (258)
T ss_pred CCCeEEEEcCCCCCCcccchhCCHHHHHHHHHHHHHHh
Confidence 5889999999998776 469999999999999999986
No 8
>cd07213 Pat17_PNPLA8_PNPLA9_like1 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=97.52 E-value=0.00022 Score=50.65 Aligned_cols=45 Identities=20% Similarity=0.310 Sum_probs=35.2
Q ss_pred cHHHHHHHHHhCCCCceEEecCCCCCCCCccCCCHHHHHHHHHHHHHH
Q psy16484 11 TEGVHTCLSDLLPQGVYYRFNPYLSEVPDLDETRPEKLAQLRLDTDIY 58 (75)
Q Consensus 11 te~v~~~~~~ll~~~~YfRfnP~l~~~i~LDe~~~~~L~~L~~~t~~Y 58 (75)
.+.++.....++ +..||||||.+...+++ .++++++.|+..|+..
T Consensus 240 ~~~~~~~~~~~~-~~~y~Ri~~~l~~~~~~--~~~~~i~~l~~~~~~~ 284 (288)
T cd07213 240 VDAADFQCRQLL-GERYFRLDPVLPANIDL--DDNKQIEELVEIANTV 284 (288)
T ss_pred HHHHHHHHHHHc-cCcEEEeCCCCCcccCc--cCHHHHHHHHHHHHhc
Confidence 355666777777 88999999999665555 4689999999988753
No 9
>KOG1384|consensus
Probab=86.37 E-value=0.62 Score=34.90 Aligned_cols=45 Identities=13% Similarity=0.278 Sum_probs=36.3
Q ss_pred ceEEecCCCCC--CCCccCCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy16484 26 VYYRFNPYLSE--VPDLDETRPEKLAQLRLDTDIYIRKNEAKFQAAI 70 (75)
Q Consensus 26 ~YfRfnP~l~~--~i~LDe~~~~~L~~L~~~t~~Yi~~n~~~l~~~~ 70 (75)
-||||+|.+.+ +-..-+.-++-++.|+.-|.+|..++..+++++-
T Consensus 197 ~f~~~~~~~~~k~d~~~~~~l~~aie~iK~nT~~lakrQ~~~I~~l~ 243 (348)
T KOG1384|consen 197 GFKEFYPWLTDKWDLARKELLEKAIEAIKENTRRLAKRQKRKIEKLF 243 (348)
T ss_pred hhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 49999999977 3344445567889999999999999999998763
No 10
>PF08368 FAST_2: FAST kinase-like protein, subdomain 2; InterPro: IPR013579 This domain represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases (2.7.1 from EC) that contains several conserved leucine residues. FAST kinase is rapidly activated during Fas-mediated apoptosis, when it phosphorylates TIA-1, a nuclear RNA-binding protein that has been implicated as an effector of apoptosis []. Note that many family members are hypothetical proteins. This subdomain is often found associated with the FAST kinase-like protein, subdomain 2.
Probab=74.59 E-value=4.5 Score=24.22 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=19.9
Q ss_pred HHHHHHHHhCCCCceEEecCCCCCC
Q psy16484 13 GVHTCLSDLLPQGVYYRFNPYLSEV 37 (75)
Q Consensus 13 ~v~~~~~~ll~~~~YfRfnP~l~~~ 37 (75)
.++.++..++++..|||.+......
T Consensus 52 ~v~~~L~~lLg~~~~~~~~v~tp~g 76 (93)
T PF08368_consen 52 EVQEALKSLLGGENYFRSNVITPYG 76 (93)
T ss_pred HHHHHHHHHhCCccceEEccccCCC
Confidence 4666999999778999999877543
No 11
>PF05347 Complex1_LYR: Complex 1 protein (LYR family); InterPro: IPR008011 This family of short proteins includes proteins from the NADH-ubiquinone oxidoreductase complex I. The family includes the B14 subunit from bovine NADH-ubiquinone oxidoreductase B14 subunit Q02366 from SWISSPROT, and the B22 subunit from the human enzyme Q9Y6M9 from SWISSPROT. The family has been named LYR after a highly conserved tripeptide motif close to the N terminus of these proteins. Members of this family also found in yeast which do contain this complex. In these organisms they are believed to be be required for iron-sulphur custer biogenesis.
Probab=72.76 E-value=5.3 Score=21.42 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=18.8
Q ss_pred CccCCCHHHHHHHHHHHHHHHH
Q psy16484 39 DLDETRPEKLAQLRLDTDIYIR 60 (75)
Q Consensus 39 ~LDe~~~~~L~~L~~~t~~Yi~ 60 (75)
.-+++||+++..++..|+.+++
T Consensus 37 n~~~~d~~~I~~~l~~g~~~l~ 58 (59)
T PF05347_consen 37 NRNETDPEKIEELLKKGEEELE 58 (59)
T ss_pred cCCCCCHHHHHHHHHHHHHHhc
Confidence 3468999999999999999874
No 12
>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification. ; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....
Probab=72.60 E-value=10 Score=25.87 Aligned_cols=28 Identities=11% Similarity=0.143 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhc
Q psy16484 47 KLAQLRLDTDIYIRKNEAKFQAAINSKI 74 (75)
Q Consensus 47 ~L~~L~~~t~~Yi~~n~~~l~~~~~~Ll 74 (75)
.|..-...|...+.+|++.++++++.|+
T Consensus 173 lL~~a~~~a~~iL~~~r~~l~~la~~Ll 200 (213)
T PF01434_consen 173 LLEEAYARAKEILEENREALEALAEALL 200 (213)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3445557889999999999999999986
No 13
>KOG4117|consensus
Probab=69.50 E-value=12 Score=21.92 Aligned_cols=34 Identities=21% Similarity=0.344 Sum_probs=29.6
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHhhc
Q psy16484 41 DETRPEKLAQLRLDTDIYIRKNEAKFQAAINSKI 74 (75)
Q Consensus 41 De~~~~~L~~L~~~t~~Yi~~n~~~l~~~~~~Ll 74 (75)
.+++|+|+..|-...|..+..-+++|+-..+.+|
T Consensus 7 a~aDpkNmq~LTs~vQ~lLQq~QDkFQtMSDQII 40 (73)
T KOG4117|consen 7 AEADPKNMQDLTSVVQGLLQQTQDKFQTMSDQII 40 (73)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999988776543
No 14
>PF02676 TYW3: Methyltransferase TYW3; InterPro: IPR003827 The methyltransferase TYW3 (tRNA-yW- synthesising protein 3) has been identified in yeast to be involved in wybutosine (yW) biosynthesis []. yW is a complexly modified guanosine residue that contains a tricyclic base and is found at the 3'-position adjacent the anticodon of phenylalanine tRNA. TYW3 is an N-4 methylase that methylates yW-86 to yield yW-72 in an Ado-Met-dependent manner [].; PDB: 1TLJ_A 2DVK_A 2IT3_B 2IT2_A 2DRV_A 2QG3_B.
Probab=66.17 E-value=18 Score=25.00 Aligned_cols=31 Identities=13% Similarity=0.073 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q psy16484 43 TRPEKLAQLRLDTDIYIRKNEAKFQAAINSK 73 (75)
Q Consensus 43 ~~~~~L~~L~~~t~~Yi~~n~~~l~~~~~~L 73 (75)
++++-|..|...+...+.+|..+++++-+.|
T Consensus 170 V~~~yL~~Lv~~aN~kl~~n~~rl~rl~~~l 200 (205)
T PF02676_consen 170 VSEEYLRFLVDIANEKLEENKKRLERLYEAL 200 (205)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999998776
No 15
>PF06296 DUF1044: Protein of unknown function (DUF1044); InterPro: IPR009387 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=63.06 E-value=26 Score=22.44 Aligned_cols=34 Identities=12% Similarity=0.173 Sum_probs=31.3
Q ss_pred CCccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy16484 38 PDLDETRPEKLAQLRLDTDIYIRKNEAKFQAAIN 71 (75)
Q Consensus 38 i~LDe~~~~~L~~L~~~t~~Yi~~n~~~l~~~~~ 71 (75)
.+.++.+++.+..|...++.+..-..++|+.+++
T Consensus 80 ~~~~nis~~El~~lk~la~~l~~~~~~~l~~~i~ 113 (120)
T PF06296_consen 80 NEKANISDKELKALKKLAKELLNLSEEQLETLIA 113 (120)
T ss_pred cccCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 4679999999999999999999999999998875
No 16
>PF10512 Borealin: Cell division cycle-associated protein 8 ; InterPro: IPR018867 The chromosomal passenger complex of Aurora B kinase, INCENP, and Survivin has essential regulatory roles at centromeres and the central spindle in mitosis. Cell division cycle-associated protein 8, also known as Borealin, is also a member of the complex. Approximately half of Aurora B in mitotic cells is complexed with INCENP, Borealin, and Survivin. Depletion of Borealin by RNA interference delays mitotic progression and results in kinetochore-spindle mis-attachments and an increase in bipolar spindles associated with ectopic asters []. ; PDB: 2KDD_A.
Probab=57.87 E-value=19 Score=22.93 Aligned_cols=44 Identities=25% Similarity=0.187 Sum_probs=30.3
Q ss_pred ecCCCC--CCCCc--cCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q psy16484 30 FNPYLS--EVPDL--DETRPEKLAQLRLDTDIYIRKNEAKFQAAINSK 73 (75)
Q Consensus 30 fnP~l~--~~i~L--De~~~~~L~~L~~~t~~Yi~~n~~~l~~~~~~L 73 (75)
+|=++. +.+.| +|.+...|.+|=.+|...|+.=+..++++|+.+
T Consensus 68 vnIPl~~G~~~~l~~~dl~~~~l~~Ld~~tl~~ik~L~~~L~~i~~~a 115 (116)
T PF10512_consen 68 VNIPLGNGKPIRLLASDLDREDLEQLDPETLNQIKTLQANLQKICSKA 115 (116)
T ss_dssp E---SSSSS---EETTT--HHHHHTS-HHHHHHHHHHHHHHHHHHHHS
T ss_pred EEEecCCCeEEEcchhhcCHHHHHhcCHHHHHHHHHHHHHHHHHHHhc
Confidence 444554 34678 999999999999999999999889999999764
No 17
>PRK04235 hypothetical protein; Provisional
Probab=56.28 E-value=33 Score=23.64 Aligned_cols=31 Identities=10% Similarity=0.011 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q psy16484 43 TRPEKLAQLRLDTDIYIRKNEAKFQAAINSK 73 (75)
Q Consensus 43 ~~~~~L~~L~~~t~~Yi~~n~~~l~~~~~~L 73 (75)
++++-|..|...|..-+.+|.++++++-+.|
T Consensus 160 V~~eyl~~Lv~~aN~kl~~n~~rl~rl~~~l 190 (196)
T PRK04235 160 VDEEYLKFLVEVANEKLLRGKERLNRLEEEL 190 (196)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999999987765
No 18
>PF10888 DUF2742: Protein of unknown function (DUF2742); InterPro: IPR024384 Members of this family of actinobacterial proteins are described as putative PhiRv1/PhiRv2 prophage proteins, however their function is unknown. This two prophages have been detected in the genome sequence of Mycobacterium tuberculosis [].
Probab=56.22 E-value=47 Score=20.70 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=22.7
Q ss_pred CCccCCCHHHHHHHHHHHHHHHHH
Q psy16484 38 PDLDETRPEKLAQLRLDTDIYIRK 61 (75)
Q Consensus 38 i~LDe~~~~~L~~L~~~t~~Yi~~ 61 (75)
..||+.||-|+..|...++.|+.+
T Consensus 33 ~~L~d~DPrK~~Al~~Aa~~waLr 56 (97)
T PF10888_consen 33 CALDDGDPRKMAALLVAAEHWALR 56 (97)
T ss_pred HcCCCCCHHHHHHHHHHHHHHHHH
Confidence 499999999999999999999987
No 19
>PF10513 EPL1: Enhancer of polycomb-like; InterPro: IPR019542 This domain is found at the N-terminal of EPL1 (Enhancer of polycomb-like) proteins. The EPL1 protein is a member of a histone acetyltransferase complex which is involved in transcriptional activation of selected genes []. It is also present at the N terminus of Jade family proteins.
Probab=55.92 E-value=10 Score=24.43 Aligned_cols=48 Identities=23% Similarity=0.268 Sum_probs=28.8
Q ss_pred CCceEEecC-CC-----CCCCCccCCCHHHHHHHHHH----HHHHHHHhHHHHHHHHHhh
Q psy16484 24 QGVYYRFNP-YL-----SEVPDLDETRPEKLAQLRLD----TDIYIRKNEAKFQAAINSK 73 (75)
Q Consensus 24 ~~~YfRfnP-~l-----~~~i~LDe~~~~~L~~L~~~----t~~Yi~~n~~~l~~~~~~L 73 (75)
+..|+||.. .. ...++|||-|..=|..+=.. +...| .++.|+.+.+.|
T Consensus 100 p~~yi~~~~~~~e~~~~~veYDmDeeD~~wL~~~N~~r~~~~~~~l--s~~~FE~~md~l 157 (160)
T PF10513_consen 100 PSSYIRFSEKSVEDLDEGVEYDMDEEDEEWLELLNKKRKSDGLEPL--SEEDFEIIMDRL 157 (160)
T ss_pred CccccccccCCHHHhccCcCCCCchHHHHHHHHHHHHhhhcCCCCC--CHHHHHHHHHHH
Confidence 458999994 22 24569999987777766444 11122 344566655543
No 20
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=52.49 E-value=11 Score=28.62 Aligned_cols=30 Identities=3% Similarity=0.083 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhc
Q psy16484 45 PEKLAQLRLDTDIYIRKNEAKFQAAINSKI 74 (75)
Q Consensus 45 ~~~L~~L~~~t~~Yi~~n~~~l~~~~~~Ll 74 (75)
.+.|......|...+.+|+..++++|+.|+
T Consensus 451 ~~lL~~a~~ra~~lL~~~~~~l~~la~~Ll 480 (495)
T TIGR01241 451 KRIIEEAYKRAKQILTENRDELELLAKALL 480 (495)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 345566777899999999999999999986
No 21
>PF13232 Complex1_LYR_1: Complex1_LYR-like
Probab=49.44 E-value=31 Score=18.65 Aligned_cols=20 Identities=30% Similarity=0.385 Sum_probs=17.3
Q ss_pred cCCCHHHHHHHHHHHHHHHH
Q psy16484 41 DETRPEKLAQLRLDTDIYIR 60 (75)
Q Consensus 41 De~~~~~L~~L~~~t~~Yi~ 60 (75)
.++||+++.+++..|+.-+.
T Consensus 39 ~~td~~~i~~~l~~~~~~L~ 58 (61)
T PF13232_consen 39 NVTDPEKIAKLLKEGRKELE 58 (61)
T ss_pred CCCCHHHHHHHHHHHHHHHH
Confidence 58899999999999988764
No 22
>PF06531 DUF1108: Protein of unknown function (DUF1108); InterPro: IPR009494 This entry is represented by Bacteriophage 92, Orf49. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial proteins from Staphylococcus aureus as well as a number of phage proteins. The function of this family is unknown.
Probab=49.38 E-value=31 Score=21.09 Aligned_cols=28 Identities=14% Similarity=0.152 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhc
Q psy16484 47 KLAQLRLDTDIYIRKNEAKFQAAINSKI 74 (75)
Q Consensus 47 ~L~~L~~~t~~Yi~~n~~~l~~~~~~Ll 74 (75)
.++.|.+.--+||+.|.+..+++.++++
T Consensus 57 A~d~i~~aiyewIE~nTDE~Drlinlvm 84 (86)
T PF06531_consen 57 AMDIINQAIYEWIEENTDEQDRLINLVM 84 (86)
T ss_pred HHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence 4677888889999999999999998875
No 23
>KOG2612|consensus
Probab=48.99 E-value=27 Score=21.74 Aligned_cols=37 Identities=24% Similarity=0.110 Sum_probs=30.3
Q ss_pred CCCCCccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy16484 35 SEVPDLDETRPEKLAQLRLDTDIYIRKNEAKFQAAIN 71 (75)
Q Consensus 35 ~~~i~LDe~~~~~L~~L~~~t~~Yi~~n~~~l~~~~~ 71 (75)
.+.+.+||++...+.+|+.++-.-|...+..++++-+
T Consensus 3 eE~iniDe~aNgilnnLL~~~iqdI~a~e~~~qkl~k 39 (103)
T KOG2612|consen 3 EEPINIDEAANGILNNLLDDAIQDIFAEEHHLQKLGK 39 (103)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678999999999999999999888876666666543
No 24
>KOG1228|consensus
Probab=45.66 E-value=64 Score=23.20 Aligned_cols=45 Identities=16% Similarity=0.142 Sum_probs=35.0
Q ss_pred EEecCCCCCCCCccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q psy16484 28 YRFNPYLSEVPDLDETRPEKLAQLRLDTDIYIRKNEAKFQAAINSK 73 (75)
Q Consensus 28 fRfnP~l~~~i~LDe~~~~~L~~L~~~t~~Yi~~n~~~l~~~~~~L 73 (75)
.|+.-+++..=-| =++||-+.-|...+..|+.+|..+.+.+.+.|
T Consensus 164 irleVPlg~s~kL-mVTpEYv~fL~~~anekmdeN~krm~~L~~~l 208 (256)
T KOG1228|consen 164 IRLEVPLGHSGKL-MVTPEYVDFLLNVANEKMDENKKRMERLQHAL 208 (256)
T ss_pred ceeeeccCCCccE-EecHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3455555433233 57899999999999999999999999988765
No 25
>PF02021 UPF0102: Uncharacterised protein family UPF0102; InterPro: IPR003509 The proteins in this entry are functionally uncharacterised.; PDB: 3FOV_A.
Probab=45.41 E-value=28 Score=20.87 Aligned_cols=25 Identities=20% Similarity=0.421 Sum_probs=17.2
Q ss_pred CccCCCHHHHHHHHHHHHHHHHHhH
Q psy16484 39 DLDETRPEKLAQLRLDTDIYIRKNE 63 (75)
Q Consensus 39 ~LDe~~~~~L~~L~~~t~~Yi~~n~ 63 (75)
+...+++.+...|...|+.|+.+|.
T Consensus 55 ~~~~v~~~K~~ri~~~A~~yL~~~~ 79 (93)
T PF02021_consen 55 PEEAVDPRKQRRIRRAAEYYLAENP 79 (93)
T ss_dssp ------HHHHHHHHHHHHHHHHH-G
T ss_pred HHHHChHHHHHHHHHHHHHHHHHCC
Confidence 3567889999999999999999886
No 26
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated
Probab=43.52 E-value=88 Score=22.59 Aligned_cols=45 Identities=22% Similarity=0.145 Sum_probs=30.6
Q ss_pred cHHHHHHHHHhCC--CCceEEecCCCCCCCCccCCCHHHHHHHHHHHHHH
Q psy16484 11 TEGVHTCLSDLLP--QGVYYRFNPYLSEVPDLDETRPEKLAQLRLDTDIY 58 (75)
Q Consensus 11 te~v~~~~~~ll~--~~~YfRfnP~l~~~i~LDe~~~~~L~~L~~~t~~Y 58 (75)
.|.+......++. +...|=||| .+.++. ++.+||+..|+..++.|
T Consensus 298 ~e~i~~~~~~~i~~~~~~gfIl~~--Gc~i~~-~tp~eNi~a~v~a~~~y 344 (346)
T PRK00115 298 PEAIEEEVRAILDGGGGPGHIFNL--GHGILP-ETPPENVKALVEAVHEL 344 (346)
T ss_pred HHHHHHHHHHHHHHhCCCCeeeec--CCcCCC-CcCHHHHHHHHHHHHHh
Confidence 4555553333331 234577888 466655 79999999999999987
No 27
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=43.36 E-value=47 Score=26.46 Aligned_cols=35 Identities=9% Similarity=0.078 Sum_probs=28.4
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHhhc
Q psy16484 40 LDETRPEKLAQLRLDTDIYIRKNEAKFQAAINSKI 74 (75)
Q Consensus 40 LDe~~~~~L~~L~~~t~~Yi~~n~~~l~~~~~~Ll 74 (75)
+|+--...|+..-..|...+.+|++.++++|+.|+
T Consensus 545 id~ev~~il~~~~~~a~~iL~~~~~~l~~la~~Ll 579 (644)
T PRK10733 545 IDQEVKALIERNYNRARQLLTDNMDILHAMKDALM 579 (644)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34444456777788899999999999999999987
No 28
>COG1590 Uncharacterized conserved protein [Function unknown]
Probab=42.68 E-value=64 Score=22.73 Aligned_cols=31 Identities=16% Similarity=0.065 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q psy16484 43 TRPEKLAQLRLDTDIYIRKNEAKFQAAINSK 73 (75)
Q Consensus 43 ~~~~~L~~L~~~t~~Yi~~n~~~l~~~~~~L 73 (75)
++++.|..+..-+..++.++.+++.++.+.|
T Consensus 158 v~~eyl~~lv~~~n~~l~r~k~kl~rl~~~l 188 (208)
T COG1590 158 VDDEYLKFLVEIANEKLRRGKEKLARLEERL 188 (208)
T ss_pred EcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999888765
No 29
>smart00120 HX Hemopexin-like repeats. Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs).
Probab=42.05 E-value=18 Score=17.88 Aligned_cols=11 Identities=36% Similarity=0.851 Sum_probs=9.7
Q ss_pred CCCceEEecCC
Q psy16484 23 PQGVYYRFNPY 33 (75)
Q Consensus 23 ~~~~YfRfnP~ 33 (75)
.|.+|+||++.
T Consensus 16 kg~~yw~~~~~ 26 (45)
T smart00120 16 KGDKYWRFDPK 26 (45)
T ss_pred eCCEEEEEcCC
Confidence 68899999986
No 30
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family. This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein.
Probab=41.92 E-value=77 Score=22.63 Aligned_cols=43 Identities=19% Similarity=-0.041 Sum_probs=30.5
Q ss_pred HHHHHHHHHhCCCCceEEecCCCCCCCCccCCCHHHHHHHHHHHHHH
Q psy16484 12 EGVHTCLSDLLPQGVYYRFNPYLSEVPDLDETRPEKLAQLRLDTDIY 58 (75)
Q Consensus 12 e~v~~~~~~ll~~~~YfRfnP~l~~~i~LDe~~~~~L~~L~~~t~~Y 58 (75)
|.+......++.+ ..|=||| .+.++ -++.+||+..|...++.|
T Consensus 296 eeI~~~v~~~l~~-~~~Il~~--gcgi~-~~tp~eni~a~v~a~~~~ 338 (340)
T TIGR01463 296 EKVKKLAKEVLYN-GGDIVMP--GCDID-WMTPLENLKAMIEACKSI 338 (340)
T ss_pred HHHHHHHHHHHHc-CCeEECC--CCCCC-CCCCHHHHHHHHHHHHhc
Confidence 4555555666633 3456887 46654 388899999999999987
No 31
>PRK14676 hypothetical protein; Provisional
Probab=41.87 E-value=34 Score=21.57 Aligned_cols=25 Identities=0% Similarity=0.048 Sum_probs=22.1
Q ss_pred CccCCCHHHHHHHHHHHHHHHHHhH
Q psy16484 39 DLDETRPEKLAQLRLDTDIYIRKNE 63 (75)
Q Consensus 39 ~LDe~~~~~L~~L~~~t~~Yi~~n~ 63 (75)
+..-+++.|..+|...|+.|+.+|.
T Consensus 64 ~~eaV~~~K~~ri~~aA~~yL~~~~ 88 (117)
T PRK14676 64 AAARLSRRQMDRIYGAASEFLAGEP 88 (117)
T ss_pred hhHcCCHHHHHHHHHHHHHHHHhCC
Confidence 5577999999999999999998765
No 32
>PRK14686 hypothetical protein; Provisional
Probab=41.72 E-value=36 Score=21.44 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=22.4
Q ss_pred CCccCCCHHHHHHHHHHHHHHHHHhH
Q psy16484 38 PDLDETRPEKLAQLRLDTDIYIRKNE 63 (75)
Q Consensus 38 i~LDe~~~~~L~~L~~~t~~Yi~~n~ 63 (75)
.+.+.+++.|..+|...|+.|+.+|.
T Consensus 63 ~~~eaV~~~K~~rl~~aA~~yl~~~~ 88 (119)
T PRK14686 63 NPQDFVKPKKIQLLVKAVNHYIEDKD 88 (119)
T ss_pred ChhHcCCHHHHHHHHHHHHHHHHhCC
Confidence 35678899999999999999998763
No 33
>PF14777 BBIP10: Cilia BBSome complex subunit 10
Probab=40.63 E-value=49 Score=19.20 Aligned_cols=47 Identities=19% Similarity=0.429 Sum_probs=34.0
Q ss_pred HHHHhCCCC--ceEE--ecCCCCCC--CCccCCCHHHHHHHHHHHHHHHHHhH
Q psy16484 17 CLSDLLPQG--VYYR--FNPYLSEV--PDLDETRPEKLAQLRLDTDIYIRKNE 63 (75)
Q Consensus 17 ~~~~ll~~~--~YfR--fnP~l~~~--i~LDe~~~~~L~~L~~~t~~Yi~~n~ 63 (75)
++...+|.. -|+. +.|.+..+ ++|--.+-++|++|..+|+.-+.+.+
T Consensus 7 ~~~eVlPk~G~l~~E~~~~~vlCKPKLlPLKS~tLeKLEkMqkea~e~~~~~~ 59 (65)
T PF14777_consen 7 MFREVLPKQGLLFQEDKLTPVLCKPKLLPLKSVTLEKLEKMQKEAQEQLKQQE 59 (65)
T ss_pred HHHHhccccCceeeccccceeeecccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 455566433 2544 66677544 59999999999999999999887544
No 34
>KOG1150|consensus
Probab=39.21 E-value=11 Score=26.95 Aligned_cols=20 Identities=30% Similarity=0.599 Sum_probs=14.1
Q ss_pred HHhC-CCCceEEecCCCCCCC
Q psy16484 19 SDLL-PQGVYYRFNPYLSEVP 38 (75)
Q Consensus 19 ~~ll-~~~~YfRfnP~l~~~i 38 (75)
.-++ ||+.||-+||+---.|
T Consensus 41 eRllrpgstyfnLNpfeVLqI 61 (250)
T KOG1150|consen 41 ERLLRPGSTYFNLNPFEVLQI 61 (250)
T ss_pred HHHhcCCccccccChHHHHhc
Confidence 3444 8999999999754333
No 35
>PF05527 DUF758: Domain of unknown function (DUF758) ; InterPro: IPR008477 This is a family of eukaryotic proteins with unknown function, which are induced by tumour necrosis factor.; PDB: 3F4M_A.
Probab=39.07 E-value=28 Score=24.00 Aligned_cols=34 Identities=24% Similarity=0.214 Sum_probs=23.8
Q ss_pred CccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q psy16484 39 DLDETRPEKLAQLRLDTDIYIRKNEAKFQAAINSK 73 (75)
Q Consensus 39 ~LDe~~~~~L~~L~~~t~~Yi~~n~~~l~~~~~~L 73 (75)
-+|+++-+.|++|-..++.|.. |+..-+++.+-|
T Consensus 30 fIddtsselLD~ly~l~K~~t~-~kkeA~ki~Kni 63 (186)
T PF05527_consen 30 FIDDTSSELLDELYRLLKEYTG-NKKEAEKIIKNI 63 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHS--HHHHHHHHHHH
T ss_pred hcCchHHHHHHHHHHHHHHHhc-CHHHHHHHHHHH
Confidence 5799999999999999999984 555555555544
No 36
>PRK14677 hypothetical protein; Provisional
Probab=38.50 E-value=42 Score=20.86 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=23.0
Q ss_pred CCccCCCHHHHHHHHHHHHHHHHHhH
Q psy16484 38 PDLDETRPEKLAQLRLDTDIYIRKNE 63 (75)
Q Consensus 38 i~LDe~~~~~L~~L~~~t~~Yi~~n~ 63 (75)
.+..-+++.|..++...|+.|+.+|.
T Consensus 56 ~~~eaV~~~K~~ri~~aA~~yl~~~~ 81 (107)
T PRK14677 56 DPLERIDLKKVRNLEQTARFYMIQNK 81 (107)
T ss_pred ChHHCCCHHHHHHHHHHHHHHHHhCC
Confidence 36778999999999999999998765
No 37
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.85 E-value=88 Score=18.49 Aligned_cols=29 Identities=17% Similarity=0.196 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhc
Q psy16484 46 EKLAQLRLDTDIYIRKNEAKFQAAINSKI 74 (75)
Q Consensus 46 ~~L~~L~~~t~~Yi~~n~~~l~~~~~~Ll 74 (75)
+-|...+.+.+.-+.+++.+++.+.+.|.
T Consensus 25 eeLn~~laEq~~~i~k~q~qlr~L~~kl~ 53 (72)
T COG2900 25 EELNDALAEQQLVIDKLQAQLRLLTEKLK 53 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999999998764
No 38
>smart00146 PI3Kc Phosphoinositide 3-kinase, catalytic domain. Phosphoinositide 3-kinase isoforms participate in a variety of processes, including cell motility, the Ras pathway, vesicle trafficking and secretion, and apoptosis. These homologues may be either lipid kinases and/or protein kinases: the former phosphorylate the 3-position in the inositol ring of inositol phospholipids. The ataxia telangiectesia-mutated gene produced, the targets of rapamycin (TOR) and the DNA-dependent kinase have not been found to possess lipid kinase activity. Some of this family possess PI-4 kinase activities.
Probab=37.38 E-value=27 Score=23.43 Aligned_cols=47 Identities=17% Similarity=0.161 Sum_probs=36.3
Q ss_pred eEEecCCCCCCCCccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHhhc
Q psy16484 27 YYRFNPYLSEVPDLDETRPEKLAQLRLDTDIYIRKNEAKFQAAINSKI 74 (75)
Q Consensus 27 YfRfnP~l~~~i~LDe~~~~~L~~L~~~t~~Yi~~n~~~l~~~~~~Ll 74 (75)
=||+.|.+.+.++ ..-...........+-..+++|.+.|..+.+.++
T Consensus 144 PFRLT~~~~~~lg-~~~~~g~F~~~~~~~~~~Lr~~~~~i~~~l~~~~ 190 (202)
T smart00146 144 PFRLTPEMVDVMG-DSGYFGLFRSLCERALRALRKNSNLIMSLLELML 190 (202)
T ss_pred CeecCHHHHHHhC-CCcccchHHHHHHHHHHHHHcCHHHHHHHHHHHc
Confidence 3899998876665 3334478888899999999999999888877654
No 39
>PRK12497 hypothetical protein; Reviewed
Probab=37.24 E-value=40 Score=21.05 Aligned_cols=26 Identities=15% Similarity=0.387 Sum_probs=22.6
Q ss_pred CCccCCCHHHHHHHHHHHHHHHHHhH
Q psy16484 38 PDLDETRPEKLAQLRLDTDIYIRKNE 63 (75)
Q Consensus 38 i~LDe~~~~~L~~L~~~t~~Yi~~n~ 63 (75)
.+..-+++.|...|...|+.|+.+|.
T Consensus 64 ~~~eav~~~K~~ri~~aA~~yL~~~~ 89 (119)
T PRK12497 64 GAAEAVTPRKQRRLRRAAQLWLARHP 89 (119)
T ss_pred CHHHcCCHHHHHHHHHHHHHHHHhCC
Confidence 35677999999999999999998873
No 40
>PF15391 DUF4614: Domain of unknown function (DUF4614)
Probab=37.02 E-value=21 Score=24.50 Aligned_cols=10 Identities=10% Similarity=0.049 Sum_probs=5.0
Q ss_pred HHHHHHHHHH
Q psy16484 52 RLDTDIYIRK 61 (75)
Q Consensus 52 ~~~t~~Yi~~ 61 (75)
+..||.+|+.
T Consensus 137 L~LTqqFve~ 146 (181)
T PF15391_consen 137 LSLTQQFVEA 146 (181)
T ss_pred HHHHHHHHHH
Confidence 3445555553
No 41
>KOG3349|consensus
Probab=36.62 E-value=9.8 Score=25.92 Aligned_cols=15 Identities=33% Similarity=0.297 Sum_probs=12.1
Q ss_pred CCceEEecCCCCCCC
Q psy16484 24 QGVYYRFNPYLSEVP 38 (75)
Q Consensus 24 ~~~YfRfnP~l~~~i 38 (75)
..-||||.|.|+++|
T Consensus 64 ~id~y~f~psl~e~I 78 (170)
T KOG3349|consen 64 TIDGYDFSPSLTEDI 78 (170)
T ss_pred EEEEEecCccHHHHH
Confidence 346999999998765
No 42
>CHL00176 ftsH cell division protein; Validated
Probab=36.50 E-value=38 Score=27.19 Aligned_cols=30 Identities=7% Similarity=-0.017 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHhhc
Q psy16484 45 PEKLAQLRLDTDIYIRKNEAKFQAAINSKI 74 (75)
Q Consensus 45 ~~~L~~L~~~t~~Yi~~n~~~l~~~~~~Ll 74 (75)
...|......|..-+.+|++.++++|+.|+
T Consensus 580 ~~~l~~~~~~a~~iL~~~~~~l~~la~~Ll 609 (638)
T CHL00176 580 RSILHTCYQYAYQILKDNRVLIDLLVELLL 609 (638)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 355666777788999999999999999987
No 43
>PHA02843 hypothetical protein; Provisional
Probab=36.02 E-value=30 Score=19.96 Aligned_cols=23 Identities=17% Similarity=0.418 Sum_probs=18.2
Q ss_pred cHHHHHHHHHhCCCCceEEecCCC
Q psy16484 11 TEGVHTCLSDLLPQGVYYRFNPYL 34 (75)
Q Consensus 11 te~v~~~~~~ll~~~~YfRfnP~l 34 (75)
++..++.+...+ +..||.|+..-
T Consensus 15 sddydyyldnfl-dneyfkfsctn 37 (73)
T PHA02843 15 SDDYDYYLDNFL-DNEYFKFSCTN 37 (73)
T ss_pred ccchhHHHhhhc-ccceeEEEeec
Confidence 456777888999 89999997643
No 44
>PRK14684 hypothetical protein; Provisional
Probab=35.19 E-value=49 Score=20.95 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=22.2
Q ss_pred CccCCCHHHHHHHHHHHHHHHHHhH
Q psy16484 39 DLDETRPEKLAQLRLDTDIYIRKNE 63 (75)
Q Consensus 39 ~LDe~~~~~L~~L~~~t~~Yi~~n~ 63 (75)
+.+-+++.|..+|...|+.|+.+|.
T Consensus 65 ~~eaV~~~K~~rl~r~A~~yL~~~~ 89 (120)
T PRK14684 65 PVATVTPLKQRRLIKTALHYLQKHR 89 (120)
T ss_pred hHHcCCHHHHHHHHHHHHHHHHhCC
Confidence 5677999999999999999998765
No 45
>cd07217 Pat17_PNPLA8_PNPLA9_like4 Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.
Probab=32.99 E-value=36 Score=25.09 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=20.3
Q ss_pred ceEEecCCCCCC----CCccCCCHHHHHHH
Q psy16484 26 VYYRFNPYLSEV----PDLDETRPEKLAQL 51 (75)
Q Consensus 26 ~YfRfnP~l~~~----i~LDe~~~~~L~~L 51 (75)
.|.||+|.++.+ +.++++.++++++|
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (344)
T cd07217 304 TYVRYDVSLSRSGLDVLGLSDSQLEAVQKM 333 (344)
T ss_pred EEEEeccccchhccccccCchhhHHHHHhh
Confidence 499999999753 47888877777765
No 46
>PRK14688 hypothetical protein; Provisional
Probab=32.98 E-value=55 Score=20.74 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=21.8
Q ss_pred CccCCCHHHHHHHHHHHHHHHHHhH
Q psy16484 39 DLDETRPEKLAQLRLDTDIYIRKNE 63 (75)
Q Consensus 39 ~LDe~~~~~L~~L~~~t~~Yi~~n~ 63 (75)
+..-+++.|..+|...|+.|+.+|.
T Consensus 65 ~~eaV~~~K~~ri~~aA~~yL~~~~ 89 (121)
T PRK14688 65 PAESVTPRKKAHLMASAESYIQKHR 89 (121)
T ss_pred hHHcCCHHHHHHHHHHHHHHHHhCC
Confidence 4566899999999999999998774
No 47
>PRK14679 hypothetical protein; Provisional
Probab=32.29 E-value=68 Score=20.58 Aligned_cols=26 Identities=8% Similarity=0.156 Sum_probs=22.7
Q ss_pred CCccCCCHHHHHHHHHHHHHHHHHhH
Q psy16484 38 PDLDETRPEKLAQLRLDTDIYIRKNE 63 (75)
Q Consensus 38 i~LDe~~~~~L~~L~~~t~~Yi~~n~ 63 (75)
-+.+-+++.|...|...|+.|+.+|.
T Consensus 71 ~~~eaV~~~K~~ri~~aA~~yL~~~~ 96 (128)
T PRK14679 71 AAATAIDARKRARFSRAARAWLARHP 96 (128)
T ss_pred ChhhcCCHHHHHHHHHHHHHHHHhCC
Confidence 35678999999999999999998764
No 48
>PRK14678 hypothetical protein; Provisional
Probab=32.23 E-value=76 Score=20.04 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=22.2
Q ss_pred CccCCCHHHHHHHHHHHHHHHHHhH
Q psy16484 39 DLDETRPEKLAQLRLDTDIYIRKNE 63 (75)
Q Consensus 39 ~LDe~~~~~L~~L~~~t~~Yi~~n~ 63 (75)
+..-+++.|..+|...|+.|+.+|.
T Consensus 62 ~~eaV~~~K~~ri~~~A~~yL~~~~ 86 (120)
T PRK14678 62 ALESITLAKRQRLVALAYHYLAAHD 86 (120)
T ss_pred ccccCCHHHHHHHHHHHHHHHHhCC
Confidence 5677899999999999999998775
No 49
>PLN02624 ornithine-delta-aminotransferase
Probab=31.36 E-value=1.8e+02 Score=22.04 Aligned_cols=39 Identities=21% Similarity=0.232 Sum_probs=24.7
Q ss_pred CceEEecCCCCCCCCccCCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy16484 25 GVYYRFNPYLSEVPDLDETRPEKLAQLRLDTDIYIRKNEAKFQAAI 70 (75)
Q Consensus 25 ~~YfRfnP~l~~~i~LDe~~~~~L~~L~~~t~~Yi~~n~~~l~~~~ 70 (75)
..++||.|++. .+++.|+.++..-+..+......+++..
T Consensus 415 ~~~lR~~p~l~-------~t~e~id~~l~~L~~~l~~~~~~~~~~~ 453 (474)
T PLN02624 415 DTIIRLAPPLS-------ISEDELQECSKALSDVLEHDLPKLQSAK 453 (474)
T ss_pred CCEEEEECCcc-------CCHHHHHHHHHHHHHHHHHHHHHhHHhh
Confidence 46899999884 3445566666655666666655555443
No 50
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=31.25 E-value=1.3e+02 Score=18.57 Aligned_cols=61 Identities=15% Similarity=0.104 Sum_probs=38.9
Q ss_pred cccccHHHHH-----HHHHhCCCCceEEecCCCCCCCCccCCCHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy16484 7 SATDTEGVHT-----CLSDLLPQGVYYRFNPYLSEVPDLDETRPEKLAQLRLDTDIYIRKNEAKFQAA 69 (75)
Q Consensus 7 satdte~v~~-----~~~~ll~~~~YfRfnP~l~~~i~LDe~~~~~L~~L~~~t~~Yi~~n~~~l~~~ 69 (75)
++.|++.+.. .+...+++..|-++....... ..| -.--+|-.|.+.+-.|+..-++.+..-
T Consensus 16 ~~iDvd~i~~~~Di~~Lq~~i~~vtf~~l~~e~~~~-~~d-p~~~klfrLaQl~ieYLl~~q~~L~~~ 81 (118)
T PF13815_consen 16 SAIDVDRIVRELDIDTLQENIENVTFCDLENEDCQH-FVD-PNFLKLFRLAQLSIEYLLHCQEYLSSQ 81 (118)
T ss_pred hccCHHHHHhccCHHHHHHHHHhcceeccChhhccC-CCC-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567776655 677888778898888877544 112 122466777777778877655554443
No 51
>PF07795 DUF1635: Protein of unknown function (DUF1635); InterPro: IPR012862 The members of this family include sequences that are parts of hypothetical proteins expressed by plant species. The region in question is about 170 amino acids long.
Probab=31.17 E-value=1e+02 Score=21.78 Aligned_cols=27 Identities=15% Similarity=0.250 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhh
Q psy16484 47 KLAQLRLDTDIYIRKNEAKFQAAINSK 73 (75)
Q Consensus 47 ~L~~L~~~t~~Yi~~n~~~l~~~~~~L 73 (75)
.|+.++..|++=++++++.+.++.++|
T Consensus 16 ELE~~k~~A~EElRk~eeqi~~L~~Ll 42 (214)
T PF07795_consen 16 ELEATKMEANEELRKREEQIAHLKDLL 42 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577888888888999988888888776
No 52
>PRK14689 hypothetical protein; Provisional
Probab=30.98 E-value=67 Score=20.62 Aligned_cols=25 Identities=16% Similarity=0.200 Sum_probs=22.1
Q ss_pred CccCCCHHHHHHHHHHHHHHHHHhH
Q psy16484 39 DLDETRPEKLAQLRLDTDIYIRKNE 63 (75)
Q Consensus 39 ~LDe~~~~~L~~L~~~t~~Yi~~n~ 63 (75)
+.+-+++.|..+|...|+.|+.+|.
T Consensus 68 ~~eaV~~~Kqrri~raA~~yL~~~~ 92 (124)
T PRK14689 68 GLAAFHPRKRRRLARAINCWRAAHP 92 (124)
T ss_pred hhHcCCHHHHHHHHHHHHHHHHhCC
Confidence 4577999999999999999998765
No 53
>PF12236 Head-tail_con: Bacteriophage head to tail connecting protein; InterPro: IPR020991 This entry represents a family of head-to-tail joining proteins found in podoviruses [].
Probab=30.78 E-value=1.8e+02 Score=22.13 Aligned_cols=18 Identities=28% Similarity=0.552 Sum_probs=13.8
Q ss_pred HHHHhCC-CCceEEecCCC
Q psy16484 17 CLSDLLP-QGVYYRFNPYL 34 (75)
Q Consensus 17 ~~~~ll~-~~~YfRfnP~l 34 (75)
.+..++| +.++|||.|.-
T Consensus 59 l~~~ltpp~~~wfrl~~~~ 77 (480)
T PF12236_consen 59 LMSGLTPPSRPWFRLEPSD 77 (480)
T ss_pred HHHhhCCCCCCceeccCCc
Confidence 5666665 66799999877
No 54
>KOG2706|consensus
Probab=30.56 E-value=85 Score=24.04 Aligned_cols=53 Identities=19% Similarity=0.300 Sum_probs=28.9
Q ss_pred cccHHHHH--HHHHhCCCCceEEecCCCC-CCC---Ccc---CCCHHHHHHHHHHHHHHHHHh
Q psy16484 9 TDTEGVHT--CLSDLLPQGVYYRFNPYLS-EVP---DLD---ETRPEKLAQLRLDTDIYIRKN 62 (75)
Q Consensus 9 tdte~v~~--~~~~ll~~~~YfRfnP~l~-~~i---~LD---e~~~~~L~~L~~~t~~Yi~~n 62 (75)
|-.|..|+ -+|.++ ..+|||.+-... .+. .-| |+.-+.+.-++|-.-.|+..|
T Consensus 162 saaEi~~Y~f~f~Gl~-TGPYYrYq~~~D~fem~fKs~aPTlEakle~lkyalf~calflaTN 223 (476)
T KOG2706|consen 162 SAAEIFAYFFHFCGLF-TGPYYRYQMLIDSFEMIFKSWAPTLEAKLEFLKYALFSCALFLATN 223 (476)
T ss_pred hHHHHHHHHHHHhhhc-cCcceehhhhhhhcccchhccCchHHHHHHHHHHHHHHhHHHHhhc
Confidence 44455555 678889 889999554442 222 223 333344444445555555544
No 55
>TIGR00252 conserved hypothetical protein TIGR00252. the scores for Mycobacterium tuberculosis and Treponema pallidum are low considering the alignment
Probab=29.70 E-value=69 Score=20.19 Aligned_cols=24 Identities=8% Similarity=0.220 Sum_probs=21.2
Q ss_pred CccCCCHHHHHHHHHHHHHHHHHh
Q psy16484 39 DLDETRPEKLAQLRLDTDIYIRKN 62 (75)
Q Consensus 39 ~LDe~~~~~L~~L~~~t~~Yi~~n 62 (75)
+..-+++.|..+|...|+.|+.+|
T Consensus 65 ~~eaV~~~K~~ri~~aA~~yL~~~ 88 (119)
T TIGR00252 65 ALLSVNARKQEKILQTANLWLASQ 88 (119)
T ss_pred hHHcCCHHHHHHHHHHHHHHHHhC
Confidence 456789999999999999999876
No 56
>PRK14680 hypothetical protein; Provisional
Probab=29.65 E-value=80 Score=20.39 Aligned_cols=25 Identities=12% Similarity=0.141 Sum_probs=22.1
Q ss_pred CccCCCHHHHHHHHHHHHHHHHHhH
Q psy16484 39 DLDETRPEKLAQLRLDTDIYIRKNE 63 (75)
Q Consensus 39 ~LDe~~~~~L~~L~~~t~~Yi~~n~ 63 (75)
+..-+++.|..+|...|+.|+.+|.
T Consensus 65 p~eaV~~~K~~ri~raA~~yL~~~~ 89 (134)
T PRK14680 65 PTDALTHSKRHRLIRAARAWLAAHD 89 (134)
T ss_pred hHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 5677899999999999999998765
No 57
>PRK14682 hypothetical protein; Provisional
Probab=29.32 E-value=83 Score=19.78 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=21.5
Q ss_pred CccCCCHHHHHHHHHHHHHHHHHhH
Q psy16484 39 DLDETRPEKLAQLRLDTDIYIRKNE 63 (75)
Q Consensus 39 ~LDe~~~~~L~~L~~~t~~Yi~~n~ 63 (75)
+..-+++.|..+|...|+.|+.++.
T Consensus 64 ~~eaV~~~K~~ri~~aA~~yL~~~~ 88 (117)
T PRK14682 64 AEEMLTYSKQQKLVNSASIYLQHNP 88 (117)
T ss_pred hHHcCCHHHHHHHHHHHHHHHHhCC
Confidence 4567899999999999999998764
No 58
>KOG0731|consensus
Probab=29.23 E-value=45 Score=27.72 Aligned_cols=34 Identities=15% Similarity=0.134 Sum_probs=26.0
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHhhc
Q psy16484 41 DETRPEKLAQLRLDTDIYIRKNEAKFQAAINSKI 74 (75)
Q Consensus 41 De~~~~~L~~L~~~t~~Yi~~n~~~l~~~~~~Ll 74 (75)
|.--..-+.+.-..|..|+.+|++.++++++.|+
T Consensus 699 d~ev~~lv~~ay~~~~~ll~~n~~~l~~ia~~LL 732 (774)
T KOG0731|consen 699 DTEVRRLVQKAYERTKELLRTNRDKLDKIAEVLL 732 (774)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3333344555667789999999999999999986
No 59
>PF11176 DUF2962: Protein of unknown function (DUF2962); InterPro: IPR021346 This eukaryotic family of proteins has no known function. ; PDB: 2KKM_A.
Probab=28.31 E-value=1.2e+02 Score=19.93 Aligned_cols=30 Identities=10% Similarity=0.302 Sum_probs=19.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy16484 42 ETRPEKLAQLRLDTDIYIRKNEAKFQAAIN 71 (75)
Q Consensus 42 e~~~~~L~~L~~~t~~Yi~~n~~~l~~~~~ 71 (75)
+..+--+..+....+.||.++.+.++++-.
T Consensus 62 ~~~~~t~~e~~~lI~~yl~R~DeEleql~~ 91 (155)
T PF11176_consen 62 DKKPFTLEEIHELIERYLHRFDEELEQLKK 91 (155)
T ss_dssp T-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 344455666777777999999999998754
No 60
>PF05135 Phage_connect_1: Phage gp6-like head-tail connector protein; InterPro: IPR021146 The members of this family contain a conserved QLRG motif. This family of phage proteins are largely uncharacterised, although Q97HW6 from SWISSPROT and Q9XJA2 from SWISSPROT suggest a role in DNA packaging.; PDB: 2KBZ_A 3JVO_M.
Probab=27.50 E-value=1.1e+02 Score=17.65 Aligned_cols=21 Identities=24% Similarity=0.324 Sum_probs=18.4
Q ss_pred cCCCHHHHHHHHHHHHHHHHH
Q psy16484 41 DETRPEKLAQLRLDTDIYIRK 61 (75)
Q Consensus 41 De~~~~~L~~L~~~t~~Yi~~ 61 (75)
++.+++.|..++..|+.|+..
T Consensus 17 ~d~dD~~l~~li~~A~~~i~~ 37 (101)
T PF05135_consen 17 DDDDDDLLELLIDAAEEYIEN 37 (101)
T ss_dssp TTTTHHHHHHHHHHHHHHHHC
T ss_pred CCccHHHHHHHHHHHHHHHHH
Confidence 567789999999999999984
No 61
>KOG3067|consensus
Probab=27.15 E-value=44 Score=23.59 Aligned_cols=18 Identities=44% Similarity=0.848 Sum_probs=13.9
Q ss_pred HHHHhCCCCceEEecCCC
Q psy16484 17 CLSDLLPQGVYYRFNPYL 34 (75)
Q Consensus 17 ~~~~ll~~~~YfRfnP~l 34 (75)
.+..+.|..+|||+|-.-
T Consensus 73 ~LaE~~~~~qyyry~~~w 90 (226)
T KOG3067|consen 73 MLAELPPAGQYYRYNGHW 90 (226)
T ss_pred HHhhcCCccceEEecchH
Confidence 455667888999999754
No 62
>COG0792 Predicted endonuclease distantly related to archaeal Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=26.87 E-value=75 Score=20.18 Aligned_cols=25 Identities=16% Similarity=0.401 Sum_probs=22.8
Q ss_pred CccCCCHHHHHHHHHHHHHHHHHhH
Q psy16484 39 DLDETRPEKLAQLRLDTDIYIRKNE 63 (75)
Q Consensus 39 ~LDe~~~~~L~~L~~~t~~Yi~~n~ 63 (75)
+..-+++.|+.+|.+.|.-|+.++.
T Consensus 61 a~~aV~~~K~~ki~~aA~~~La~~~ 85 (114)
T COG0792 61 AAEAVTPRKQRKLRRAARLWLARQP 85 (114)
T ss_pred hHHhCCHHHHHHHHHHHHHHHhhCC
Confidence 6678899999999999999999876
No 63
>PRK14674 hypothetical protein; Provisional
Probab=26.08 E-value=88 Score=20.21 Aligned_cols=25 Identities=4% Similarity=0.042 Sum_probs=21.9
Q ss_pred CccCCCHHHHHHHHHHHHHHHHHhH
Q psy16484 39 DLDETRPEKLAQLRLDTDIYIRKNE 63 (75)
Q Consensus 39 ~LDe~~~~~L~~L~~~t~~Yi~~n~ 63 (75)
+..-+++.|..+|...|+.|+.+|.
T Consensus 64 ~~eaVt~~K~~ri~raA~~yL~~~~ 88 (133)
T PRK14674 64 ACEMVTLSKQKKIIKTAMRFLQRYP 88 (133)
T ss_pred hHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 5567899999999999999998765
No 64
>PF08159 NUC153: NUC153 domain; InterPro: IPR012580 This small domain is found in a novel nucleolar family [].; GO: 0005634 nucleus
Probab=25.86 E-value=28 Score=17.07 Aligned_cols=18 Identities=33% Similarity=0.519 Sum_probs=12.1
Q ss_pred EecCCCC-CCCCccCCCHH
Q psy16484 29 RFNPYLS-EVPDLDETRPE 46 (75)
Q Consensus 29 RfnP~l~-~~i~LDe~~~~ 46 (75)
||.-... .++.+|+++|+
T Consensus 3 RF~~lf~~~dF~ID~t~~~ 21 (30)
T PF08159_consen 3 RFKALFEDPDFAIDPTSPE 21 (30)
T ss_pred hHHHhhCCcccccCCCCHH
Confidence 4444443 56799999886
No 65
>PF09551 Spore_II_R: Stage II sporulation protein R (spore_II_R); InterPro: IPR014202 This entry is designated stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. SpoIIR is a signalling protein that links the activation of sigma E to the transcriptional activity of sigma F during sporulation [, ].
Probab=25.45 E-value=1.2e+02 Score=19.77 Aligned_cols=21 Identities=14% Similarity=0.147 Sum_probs=17.2
Q ss_pred HHHHHHHHHhHHHHHHHHHhh
Q psy16484 53 LDTDIYIRKNEAKFQAAINSK 73 (75)
Q Consensus 53 ~~t~~Yi~~n~~~l~~~~~~L 73 (75)
.+++.++.+|...|+++|+.-
T Consensus 44 ~ea~~~i~~~~~~Ie~~A~~~ 64 (130)
T PF09551_consen 44 EEAREVIRENLPEIEQIAEEV 64 (130)
T ss_pred HHHHHHHHHhHHHHHHHHHHH
Confidence 578889999999999988654
No 66
>PF13958 ToxN_toxin: Toxin ToxN, type III toxin-antitoxin system; PDB: 2XD0_X 2XDD_E 2XDB_A.
Probab=25.03 E-value=1.8e+02 Score=19.25 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=27.6
Q ss_pred CCccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q psy16484 38 PDLDETRPEKLAQLRLDTDIYIRKNEAKFQAAINSK 73 (75)
Q Consensus 38 i~LDe~~~~~L~~L~~~t~~Yi~~n~~~l~~~~~~L 73 (75)
+++++..+++-..|+..=..|+.+|+++|.+=|+.|
T Consensus 97 idi~~~~d~kY~~LL~kq~~fi~~n~~~I~~kA~kl 132 (161)
T PF13958_consen 97 IDINKEQDEKYKNLLQKQLRFINKNKEKIQKKAEKL 132 (161)
T ss_dssp --TTTS-S-HHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred ecCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566677889999999999999999999888776
No 67
>PRK14673 hypothetical protein; Provisional
Probab=25.01 E-value=94 Score=20.26 Aligned_cols=25 Identities=8% Similarity=0.073 Sum_probs=21.9
Q ss_pred CccCCCHHHHHHHHHHHHHHHHHhH
Q psy16484 39 DLDETRPEKLAQLRLDTDIYIRKNE 63 (75)
Q Consensus 39 ~LDe~~~~~L~~L~~~t~~Yi~~n~ 63 (75)
+..-+++.|..+|...|+.|+.+|.
T Consensus 86 a~eaVt~~Kq~ri~~aA~~yL~~~~ 110 (137)
T PRK14673 86 AAASIGARKQRRLVAAALHFLARHG 110 (137)
T ss_pred hHHcCCHHHHHHHHHHHHHHHHhCC
Confidence 4567899999999999999998775
No 68
>KOG2608|consensus
Probab=24.55 E-value=44 Score=26.19 Aligned_cols=26 Identities=27% Similarity=0.468 Sum_probs=16.7
Q ss_pred chhccccccHHHHH--------HHHHhCCCCceEE
Q psy16484 3 KILESATDTEGVHT--------CLSDLLPQGVYYR 29 (75)
Q Consensus 3 ~vvdsatdte~v~~--------~~~~ll~~~~YfR 29 (75)
.+.|+.||++++.. -+..++ ...|||
T Consensus 36 ~i~dc~c~~~~i~nln~~~i~~~lq~l~-ksdffr 69 (469)
T KOG2608|consen 36 IIEDCTCDYETIDNLNNEVIYPLLQKLL-KSDFFR 69 (469)
T ss_pred ccccCCCCHHHHHHhhccccchHHHHHh-cccchh
Confidence 46677888888776 455556 555444
No 69
>cd08054 gp6 Head-Tail Connector Protein gp6 of Bacteriophage HK97 and similar proteins. The bacteriophage HK97 gp6 protein is critical in the assembly of the connector, a specialized structure that serves as an interface for head and tail attachment, as well as a point at which DNA exits the head during infection by the bacteriophage. It forms a dodecameric ring structure that comprises the middle ring of the connector, located between the portal protein (attached to the head) and the gp7 ring (attached to the tail). It is a component of the mature phage and the absence of HK97 gp6 results in defective head-tail joining and the absence of mature phage particles. Although the crystal structure of HK97 gp6 shows an unexpected 13-mer ring, the biological form present in the mature phage is believed to be a dodecamer.
Probab=24.28 E-value=1.4e+02 Score=16.71 Aligned_cols=20 Identities=15% Similarity=0.197 Sum_probs=17.1
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q psy16484 42 ETRPEKLAQLRLDTDIYIRK 61 (75)
Q Consensus 42 e~~~~~L~~L~~~t~~Yi~~ 61 (75)
+.+++.|..++..|+.|+..
T Consensus 14 d~dD~~i~~li~aA~~~i~~ 33 (91)
T cd08054 14 DDDDALIELLIDAAEEYIEN 33 (91)
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 33489999999999999985
No 70
>TIGR03090 SASP_tlp small, acid-soluble spore protein tlp. This protein family is restricted to a subset of endospore-forming bacteria such as Bacillus subtilis, all of which are in the Firmicutes (low-GC Gram-positive) lineage. Although previously designated tlp (thioredoxin-like protein), the B. subtilis protein was shown to be a minor small acid-soluble spore protein SASP, unique to spores. The motif E[VIL]XDE near the C-terminus probably represents at a germination protease cleavage site.
Probab=24.19 E-value=1.4e+02 Score=17.50 Aligned_cols=23 Identities=26% Similarity=0.208 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHH
Q psy16484 46 EKLAQLRLDTDIYIRKNEAKFQA 68 (75)
Q Consensus 46 ~~L~~L~~~t~~Yi~~n~~~l~~ 68 (75)
++|++|+..|..=|+.-++.+..
T Consensus 11 EkLQ~mi~nTieN~~eAee~l~~ 33 (70)
T TIGR03090 11 EKLQQMIDNTIENMEEANEYIEA 33 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999988887777665555543
No 71
>PHA00725 hypothetical protein
Probab=23.93 E-value=31 Score=20.80 Aligned_cols=12 Identities=33% Similarity=0.556 Sum_probs=8.9
Q ss_pred CCCceEEecCCC
Q psy16484 23 PQGVYYRFNPYL 34 (75)
Q Consensus 23 ~~~~YfRfnP~l 34 (75)
..+++||||=..
T Consensus 16 rnsprfRfNy~~ 27 (81)
T PHA00725 16 RNSPRFRFNYYH 27 (81)
T ss_pred cCCCccccchHH
Confidence 466899999654
No 72
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=23.89 E-value=66 Score=22.82 Aligned_cols=24 Identities=29% Similarity=0.660 Sum_probs=21.4
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhHH
Q psy16484 41 DETRPEKLAQLRLDTDIYIRKNEA 64 (75)
Q Consensus 41 De~~~~~L~~L~~~t~~Yi~~n~~ 64 (75)
+..+|+.+..++.+-+.|++.|++
T Consensus 192 ~~l~~e~V~~ikedieyYve~n~d 215 (233)
T PF04065_consen 192 DELDPEQVEDIKEDIEYYVESNQD 215 (233)
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCC
Confidence 567899999999999999998865
No 73
>PF00045 Hemopexin: Hemopexin; InterPro: IPR018487 Hemopexin (3.2.1.35 from EC) is a serum glycoprotein that binds haem and transports it to the liver for breakdown and iron recovery, after which the free hemopexin returns to the circulation []. Hemopexin prevents haem-mediated oxidative stress. Structurally hemopexin consists of two similar halves of approximately two hundred amino acid residues connected by a histidine-rich hinge region. Each half is itself formed by the repetition of a basic unit of some 35 to 45 residues. Hemopexin-like domains have been found in two other types of proteins, vitronectin [], a cell adhesion and spreading factor found in plasma and tissues, and matrixins MMP-1, MMP-2, MMP-3, MMP-9, MMP-10, MMP-11, MMP-12, MMP-14, MMP-15 and MMP-16, members of the matrix metalloproteinase family that cleave extracellular matrix constituents []. These zinc endopeptidases, which belong to MEROPS peptidase subfamily M10A, have a single hemopexin-like domain in their C-terminal section. It is suggested that the hemopexin domain facilitates binding to a variety of molecules and proteins, for example the HX repeats of some matrixins bind tissue inhibitor of metallopeptidases (TIMPs). This entry represents the repeat found in hempoxein and related domains.; PDB: 1SU3_B 2CLT_B 3V6N_B 3C7X_A 1GXD_A 1RTG_A 1CK7_A 1GEN_A 1ITV_A 2JXY_A ....
Probab=23.72 E-value=53 Score=16.55 Aligned_cols=11 Identities=27% Similarity=0.628 Sum_probs=9.7
Q ss_pred CCCceEEecCC
Q psy16484 23 PQGVYYRFNPY 33 (75)
Q Consensus 23 ~~~~YfRfnP~ 33 (75)
.|.+|+||++.
T Consensus 16 kg~~ywr~~~~ 26 (45)
T PF00045_consen 16 KGNQYWRFDES 26 (45)
T ss_dssp ETTEEEEEETT
T ss_pred ECCEEEEEcCc
Confidence 57899999998
No 74
>smart00309 PAH Pancreatic hormones / neuropeptide F / peptide YY family. Pancreatic hormone is a regulator of pancreatic and gastrointestinal functions.
Probab=23.68 E-value=1.2e+02 Score=15.54 Aligned_cols=23 Identities=30% Similarity=0.345 Sum_probs=19.0
Q ss_pred CCccCCCHHHHHHHHHHHHHHHH
Q psy16484 38 PDLDETRPEKLAQLRLDTDIYIR 60 (75)
Q Consensus 38 i~LDe~~~~~L~~L~~~t~~Yi~ 60 (75)
.+=|.+++|.|.+-..+-+.||.
T Consensus 7 ~Pg~~a~~e~l~~Y~~~L~~Yin 29 (36)
T smart00309 7 RPGDDASPEDLRQYLAALREYIN 29 (36)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHH
Confidence 35588899999999999998884
No 75
>PRK03830 small acid-soluble spore protein Tlp; Provisional
Probab=23.60 E-value=1.5e+02 Score=17.53 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH
Q psy16484 46 EKLAQLRLDTDIYIRKNEAKFQ 67 (75)
Q Consensus 46 ~~L~~L~~~t~~Yi~~n~~~l~ 67 (75)
++|+.|+..|..=|+.-++.+.
T Consensus 12 EkLQ~mi~nTieNi~eAee~l~ 33 (73)
T PRK03830 12 EKLQEMIQNTIENIEEAEETIA 33 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999888777776665553
No 76
>PF07369 DUF1488: Protein of unknown function (DUF1488); InterPro: IPR009962 This family consists of several hypothetical bacterial proteins of around 85 residues in length. The function of this family is unknown.; PDB: 2GPI_A.
Probab=23.10 E-value=1.5e+02 Score=16.82 Aligned_cols=21 Identities=14% Similarity=0.105 Sum_probs=16.8
Q ss_pred HHHHHHHHhHHHHHHHHHhhc
Q psy16484 54 DTDIYIRKNEAKFQAAINSKI 74 (75)
Q Consensus 54 ~t~~Yi~~n~~~l~~~~~~Ll 74 (75)
+.....++++..|+++|+.++
T Consensus 50 ~~l~~F~~~R~~Ie~~Ae~~i 70 (83)
T PF07369_consen 50 DLLAAFDRHRFDIEEAAERLI 70 (83)
T ss_dssp HHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHCHHHHHHHHHHHH
Confidence 345677799999999998775
No 77
>PRK02877 hypothetical protein; Provisional
Probab=22.04 E-value=39 Score=21.08 Aligned_cols=19 Identities=16% Similarity=0.240 Sum_probs=16.1
Q ss_pred CccCCCHHHHHHHHHHHHH
Q psy16484 39 DLDETRPEKLAQLRLDTDI 57 (75)
Q Consensus 39 ~LDe~~~~~L~~L~~~t~~ 57 (75)
.|++++.+.++.|+..|++
T Consensus 53 ~l~~aR~~A~~rm~~~A~~ 71 (106)
T PRK02877 53 ELRKAREIAFEELGEQARA 71 (106)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5789999999999988875
No 78
>PRK14683 hypothetical protein; Provisional
Probab=21.91 E-value=1.4e+02 Score=19.03 Aligned_cols=24 Identities=4% Similarity=-0.054 Sum_probs=20.6
Q ss_pred ccCCCHHHHHHHHHHHHHHHHHhH
Q psy16484 40 LDETRPEKLAQLRLDTDIYIRKNE 63 (75)
Q Consensus 40 LDe~~~~~L~~L~~~t~~Yi~~n~ 63 (75)
..-+++.+..+|...|+.|+.++.
T Consensus 69 ~eaVt~~K~~ri~~aA~~yL~~~~ 92 (122)
T PRK14683 69 NIPITYKQQKSILKSAKYFIAFHR 92 (122)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHCC
Confidence 356899999999999999998764
No 79
>PF05484 LRV_FeS: LRV protein FeS4 cluster; InterPro: IPR008665 This iron sulphur cluster is found at the N terminus of some proteins containing leucine-repeat variant (LRV) repeats (IPR004830 from INTERPRO). These proteins have a two-domain structure, composed of a small N-terminal domain containing a cluster of four Cys residues that houses the 4Fe:4S cluster, and a larger C-terminal domain containing the LRV repeats []. Biochemical studies revealed that the 4Fe:4S cluster is sensitive to oxygen, but does not appear to have reversible redox activity.; PDB: 1LRV_A.
Probab=21.62 E-value=6.2 Score=22.38 Aligned_cols=11 Identities=36% Similarity=0.996 Sum_probs=7.7
Q ss_pred ceEEecCCCCC
Q psy16484 26 VYYRFNPYLSE 36 (75)
Q Consensus 26 ~YfRfnP~l~~ 36 (75)
.|||.||.|..
T Consensus 45 RFF~~NP~lA~ 55 (57)
T PF05484_consen 45 RFFRWNPDLAD 55 (57)
T ss_dssp HHHHH-GGGGG
T ss_pred HHHHhChHhhh
Confidence 48999998754
No 80
>PRK14681 hypothetical protein; Provisional
Probab=21.58 E-value=1.1e+02 Score=20.40 Aligned_cols=25 Identities=12% Similarity=0.116 Sum_probs=21.9
Q ss_pred CccCCCHHHHHHHHHHHHHHHHHhH
Q psy16484 39 DLDETRPEKLAQLRLDTDIYIRKNE 63 (75)
Q Consensus 39 ~LDe~~~~~L~~L~~~t~~Yi~~n~ 63 (75)
+..-+++.|..+|...|+.|+.+|.
T Consensus 103 p~eaVt~~Kqrrl~raA~~yL~~~~ 127 (158)
T PRK14681 103 PQEAVTAAKQHNLRKAACDWLLERR 127 (158)
T ss_pred hHHcCCHHHHHHHHHHHHHHHHhCC
Confidence 5577889999999999999998764
No 81
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=21.41 E-value=2.2e+02 Score=17.70 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=26.6
Q ss_pred CccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q psy16484 39 DLDETRPEKLAQLRLDTDIYIRKNEAKFQAAINSK 73 (75)
Q Consensus 39 ~LDe~~~~~L~~L~~~t~~Yi~~n~~~l~~~~~~L 73 (75)
.-++.+..+.+..-+..+.|+.-|+ +|++++..|
T Consensus 43 ~~~~~~~~~~e~~Y~Qs~~Yv~~Ne-rLqqa~~~L 76 (97)
T PF15136_consen 43 NKNEDSESEREQQYQQSRTYVAMNE-RLQQARDQL 76 (97)
T ss_pred cccCCCcchHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 4577778889999999999999874 566666554
No 82
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=21.40 E-value=1.7e+02 Score=21.23 Aligned_cols=30 Identities=10% Similarity=0.222 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q psy16484 44 RPEKLAQLRLDTDIYIRKNEAKFQAAINSK 73 (75)
Q Consensus 44 ~~~~L~~L~~~t~~Yi~~n~~~l~~~~~~L 73 (75)
+|+...+|-..+..++.+|+.-.+++.+.+
T Consensus 388 ~~~~~~~m~~~a~~~~~~~~~~~~~~~~~l 417 (425)
T PRK05749 388 DPDARQAYGEAGVAFLKQNQGALQRTLQLL 417 (425)
T ss_pred CHHHHHHHHHHHHHHHHhCccHHHHHHHHH
Confidence 577788888899999998887777777665
No 83
>PRK14675 hypothetical protein; Provisional
Probab=21.25 E-value=1.6e+02 Score=18.67 Aligned_cols=26 Identities=15% Similarity=0.089 Sum_probs=22.4
Q ss_pred CCccCCCHHHHHHHHHHHHHHHHHhH
Q psy16484 38 PDLDETRPEKLAQLRLDTDIYIRKNE 63 (75)
Q Consensus 38 i~LDe~~~~~L~~L~~~t~~Yi~~n~ 63 (75)
.+..-+++.+...|...|+.|+.+|.
T Consensus 66 ~~~~aV~~~K~~ri~~~A~~yL~~~~ 91 (125)
T PRK14675 66 VPQLAVTPFKQRQISKAALTWLAKKK 91 (125)
T ss_pred ChHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 44566899999999999999998875
No 84
>PF13074 DUF3938: Protein of unknown function (DUF3938)
Probab=21.25 E-value=55 Score=19.93 Aligned_cols=14 Identities=36% Similarity=0.641 Sum_probs=10.5
Q ss_pred hCCCCceEEecCCC
Q psy16484 21 LLPQGVYYRFNPYL 34 (75)
Q Consensus 21 ll~~~~YfRfnP~l 34 (75)
++.|-.||-|||.-
T Consensus 21 ilggyiyflfnpee 34 (102)
T PF13074_consen 21 ILGGYIYFLFNPEE 34 (102)
T ss_pred HhcceEEEEEChhH
Confidence 34567799999963
No 85
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated
Probab=21.19 E-value=2.6e+02 Score=19.86 Aligned_cols=43 Identities=19% Similarity=0.119 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCCCCceEEecCCCCCCCCccCCCHHHHHHHHHHHHHH
Q psy16484 12 EGVHTCLSDLLPQGVYYRFNPYLSEVPDLDETRPEKLAQLRLDTDIY 58 (75)
Q Consensus 12 e~v~~~~~~ll~~~~YfRfnP~l~~~i~LDe~~~~~L~~L~~~t~~Y 58 (75)
|.+......++... .|=||| ++.+.. ++.++|+..|...++.|
T Consensus 294 eeI~~~v~~~l~~g-~~Il~~--gcgi~~-~tp~enl~a~v~a~~~~ 336 (339)
T PRK06252 294 EKVKAEAKKCLEDG-VDILAP--GCGIAP-KTPLENIKAMVEARKEY 336 (339)
T ss_pred HHHHHHHHHHHHcC-CCEEcC--CCCCCC-CCCHHHHHHHHHHHHHh
Confidence 33444444555222 245666 466644 68899999999999986
No 86
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen []. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A ....
Probab=21.01 E-value=1e+02 Score=21.81 Aligned_cols=32 Identities=19% Similarity=0.200 Sum_probs=21.7
Q ss_pred CCceEEecCCCCCCCCccCCCHHHHHHHHHHHHHH
Q psy16484 24 QGVYYRFNPYLSEVPDLDETRPEKLAQLRLDTDIY 58 (75)
Q Consensus 24 ~~~YfRfnP~l~~~i~LDe~~~~~L~~L~~~t~~Y 58 (75)
+..-|=|+|. +.++ .++.+||+..|...+++|
T Consensus 312 ~~~gfIl~~g--c~ip-~~~p~eni~a~~~a~~eY 343 (343)
T PF01208_consen 312 GGGGFILSPG--CGIP-PDTPPENIKAMVEAVKEY 343 (343)
T ss_dssp TSSSEEBEBS--S----TTS-HHHHHHHHHHHHHH
T ss_pred CCCCEEEeCC--CcCC-CCcCHHHHHHHHHHHHhC
Confidence 4445566664 4444 478999999999999998
No 87
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=20.83 E-value=1.1e+02 Score=20.92 Aligned_cols=29 Identities=28% Similarity=0.376 Sum_probs=21.2
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy16484 41 DETRPEKLAQLRLDTDIYIRKNEAKFQAAIN 71 (75)
Q Consensus 41 De~~~~~L~~L~~~t~~Yi~~n~~~l~~~~~ 71 (75)
...+++.++.|+.+.. |-||+.||+.+.+
T Consensus 69 A~~~e~die~Ll~d~~--IIRnr~KI~Avi~ 97 (187)
T PRK10353 69 AAMQEEDVERLVQDAG--IIRHRGKIQAIIG 97 (187)
T ss_pred hCCCHHHHHHHhcCch--hHHhHHHHHHHHH
Confidence 4446778888888776 6788888877664
No 88
>PF11275 DUF3077: Protein of unknown function (DUF3077); InterPro: IPR021427 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=20.78 E-value=79 Score=18.79 Aligned_cols=21 Identities=24% Similarity=0.444 Sum_probs=15.0
Q ss_pred CCCceEEecCCCCCCCCccCC
Q psy16484 23 PQGVYYRFNPYLSEVPDLDET 43 (75)
Q Consensus 23 ~~~~YfRfnP~l~~~i~LDe~ 43 (75)
++.+-||.||.++.+-.+..+
T Consensus 13 ~~~pLF~v~pgip~~dAl~~a 33 (79)
T PF11275_consen 13 PHHPLFRVNPGIPCEDALEHA 33 (79)
T ss_pred CCCCeeeeCCCCCHHHHHHHH
Confidence 455799999999765555544
No 89
>PRK14687 hypothetical protein; Provisional
Probab=20.58 E-value=1.2e+02 Score=20.79 Aligned_cols=25 Identities=8% Similarity=0.174 Sum_probs=21.9
Q ss_pred CccCCCHHHHHHHHHHHHHHHHHhH
Q psy16484 39 DLDETRPEKLAQLRLDTDIYIRKNE 63 (75)
Q Consensus 39 ~LDe~~~~~L~~L~~~t~~Yi~~n~ 63 (75)
+..-+++.|..+|...|+.|+.++.
T Consensus 94 p~eaVt~~KqrRI~raA~~YL~~~~ 118 (173)
T PRK14687 94 AAASVTAGKQRKIIKTARYFLRQHP 118 (173)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 5677999999999999999997654
No 90
>PF00454 PI3_PI4_kinase: Phosphatidylinositol 3- and 4-kinase; InterPro: IPR000403 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) [] is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The three products of PI3-kinase - PI-3-P, PI-3,4-P(2) and PI-3,4,5-P(3) function as secondary messengers in cell signalling. Phosphatidylinositol 4-kinase (PI4-kinase) (2.7.1.67 from EC) [] is an enzyme that acts on phosphatidylinositol (PI) in the first committed step in the production of the secondary messenger inositol-1'4'5'-trisphosphate. This domain is also present in a wide range of protein kinases, involved in diverse cellular functions, such as control of cell growth, regulation of cell cycle progression, a DNA damage checkpoint, recombination, and maintenance of telomere length. Despite significant homology to lipid kinases, no lipid kinase activity has been demonstrated for any of the PIK-related kinases []. The PI3- and PI4-kinases share a well conserved domain at their C-terminal section; this domain seems to be distantly related to the catalytic domain of protein kinases [, ]. The catalytic domain of PI3K has the typical bilobal structure that is seen in other ATP-dependent kinases, with a small N-terminal lobe and a large C-terminal lobe. The core of this domain is the most conserved region of the PI3Ks. The ATP cofactor binds in the crevice formed by the N-and C-terminal lobes, a loop between two strands provides a hydrophobic pocket for binding of the adenine moiety, and a lysine residue interacts with the alpha-phosphate. In contrast to protein kinases, the PI3K loop which interacts with the phosphates of the ATP and is known as the glycine-rich or P-loop, contains no glycine residues. Instead, contact with the ATP -phosphate is maintained through the side chain of a conserved serine residue.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor; PDB: 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A 2WXH_A 2WXK_A 2WXG_A 2X38_A 2WXF_A ....
Probab=20.54 E-value=26 Score=23.59 Aligned_cols=52 Identities=10% Similarity=0.046 Sum_probs=37.5
Q ss_pred CCCceEEecCCCCCCC-C--ccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHhhc
Q psy16484 23 PQGVYYRFNPYLSEVP-D--LDETRPEKLAQLRLDTDIYIRKNEAKFQAAINSKI 74 (75)
Q Consensus 23 ~~~~YfRfnP~l~~~i-~--LDe~~~~~L~~L~~~t~~Yi~~n~~~l~~~~~~Ll 74 (75)
|....||+.|.+.+.+ + -.....+.+......+-.-+++|++.+..+.+.++
T Consensus 172 ~e~vPFrLT~~~~~~~~~~l~~~~~~g~f~~~~~~~~~~lr~~~~~l~~ll~~~~ 226 (235)
T PF00454_consen 172 PETVPFRLTRNMVNAMGGYLGPSGVEGLFRSSCEAILRALRRNKDLLLSLLELFL 226 (235)
T ss_dssp SS--SSTTHHHHHHHTTTSSSTSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTT
T ss_pred CCCCCeEeCHHHHHHHhccCCCchhHhHHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 4556889999776554 1 23335688889999999999999999888776653
Done!