Query psy16484
Match_columns 75
No_of_seqs 101 out of 133
Neff 6.3
Searched_HMMs 29240
Date Fri Aug 16 22:29:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16484.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16484hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1oxw_A Patatin; alpha/beta cla 99.1 8E-11 2.7E-15 85.1 5.1 63 12-74 284-361 (373)
2 2dvk_A UPF0130 protein APE0816 66.5 12 0.00042 24.7 4.9 31 43-73 151-181 (188)
3 2di4_A Zinc protease, cell div 65.0 10 0.00035 25.8 4.4 28 47-74 158-185 (238)
4 1tlj_A Hypothetical UPF0130 pr 62.6 15 0.00053 24.6 4.9 31 43-73 161-191 (213)
5 2it2_A UPF0130 protein PH1069; 62.5 16 0.00056 24.2 5.0 31 43-73 165-195 (200)
6 2qg3_A UPF0130 protein AF_2059 62.2 16 0.00053 24.6 4.9 31 43-73 166-196 (208)
7 2dhr_A FTSH; AAA+ protein, hex 47.6 26 0.00089 25.9 4.4 29 46-74 424-452 (499)
8 2ce7_A Cell division protein F 46.4 28 0.00096 25.6 4.4 29 46-74 414-442 (476)
9 2gpi_A Conserved hypothetical 37.6 52 0.0018 19.2 3.9 31 44-74 37-74 (91)
10 2x3m_A Hypothetical protein OR 36.5 21 0.00073 23.8 2.3 32 41-72 83-114 (239)
11 3f4m_A Tumor necrosis factor, 34.0 26 0.0009 22.7 2.4 22 39-60 7-28 (161)
12 1v9v_A KIAA0561 protein; helix 31.8 25 0.00085 21.7 1.8 29 46-74 71-100 (114)
13 1uhr_A SWI/SNF related, matrix 31.5 14 0.00049 21.4 0.7 33 27-62 11-43 (93)
14 3fov_A UPF0102 protein RPA0323 30.7 59 0.002 20.1 3.5 25 39-63 77-101 (134)
15 3hmu_A Aminotransferase, class 30.2 1.3E+02 0.0045 21.2 5.7 36 23-65 420-455 (472)
16 3b84_A Zinc finger and BTB dom 29.1 11 0.00036 21.9 -0.2 29 25-53 47-77 (119)
17 2kkm_A Translation machinery-a 27.9 74 0.0025 19.8 3.6 26 43-71 45-70 (144)
18 2ki0_A DS119; beta-alpha-beta, 26.3 63 0.0021 15.5 2.4 15 43-57 12-26 (36)
19 4egx_A Kinesin-like protein KI 24.5 21 0.00072 23.1 0.6 11 23-33 164-174 (184)
20 3hn0_A Nitrate transport prote 24.4 1.2E+02 0.0043 19.7 4.5 27 45-71 196-222 (283)
21 3usa_D HLA class II histocompa 23.3 52 0.0018 21.2 2.4 46 23-70 30-76 (189)
22 2dco_A S1P4 first extracellula 23.2 6.8 0.00023 19.0 -1.5 17 18-34 9-25 (34)
23 3i5t_A Aminotransferase; pyrid 22.7 1.5E+02 0.0051 20.9 4.9 30 25-61 424-453 (476)
24 4a6r_A Omega transaminase; tra 22.1 2E+02 0.0069 19.9 5.7 34 23-63 417-450 (459)
25 3gju_A Putative aminotransfera 21.8 1.4E+02 0.0048 20.7 4.5 28 26-60 427-454 (460)
26 3brv_A Inhibitor of nuclear fa 21.6 97 0.0033 16.0 3.2 26 46-71 6-31 (48)
27 2xdb_A TOXN; abortive infectio 21.6 1.1E+02 0.0038 19.7 3.7 35 39-73 101-135 (171)
28 4hv0_A AVTR; ribbon-helix-heli 21.5 40 0.0014 20.4 1.4 13 24-36 59-71 (106)
29 2l60_A Peptide YY; GPCR ligand 20.4 98 0.0034 15.6 3.0 22 39-60 12-33 (41)
30 3ayh_A DNA-directed RNA polyme 20.1 1.2E+02 0.004 18.5 3.4 29 45-73 49-84 (136)
No 1
>1oxw_A Patatin; alpha/beta class fold with approximately three layers; 2.20A {Solanum cardiophyllum} SCOP: c.19.1.3
Probab=99.10 E-value=8e-11 Score=85.14 Aligned_cols=63 Identities=14% Similarity=0.167 Sum_probs=52.2
Q ss_pred HHHHHHHHHhC----CCCceEEecC-CCC-CCCCccCCCHHHHHHHHHHHHHHHHH---------hHHHHHHHHHhhc
Q psy16484 12 EGVHTCLSDLL----PQGVYYRFNP-YLS-EVPDLDETRPEKLAQLRLDTDIYIRK---------NEAKFQAAINSKI 74 (75)
Q Consensus 12 e~v~~~~~~ll----~~~~YfRfnP-~l~-~~i~LDe~~~~~L~~L~~~t~~Yi~~---------n~~~l~~~~~~Ll 74 (75)
+.++..+..++ ++..|||||| .+. +..+||+++++++.+|++.|++|+.+ |+++|+++|+.|.
T Consensus 284 ~~~d~~~~~~~~~~~~~~~Y~Ri~~~~l~~~~~~lD~~~~~~l~~L~~~~~~~l~~~~~~~~~~tn~~~l~~~a~~L~ 361 (373)
T 1oxw_A 284 YMTDYYLSTAFQALDSKNNYLRVQENALTGTTTEMDDASEANMELLVQVGENLLKKPVSEDNPETYEEALKRFAKLLS 361 (373)
T ss_dssp HHHHHHHHHHHHHTTCGGGEEEECCCCBCGGGGCTTCCCHHHHHHHHHHHHHHHTSBSSSSCCCBHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCCCCcEEEEeCCCCCCcccccccCCHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH
Confidence 45555444333 4678999999 575 45799999999999999999999999 9999999999985
No 2
>2dvk_A UPF0130 protein APE0816; hypothetical protein, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=66.49 E-value=12 Score=24.67 Aligned_cols=31 Identities=6% Similarity=0.042 Sum_probs=28.5
Q ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q psy16484 43 TRPEKLAQLRLDTDIYIRKNEAKFQAAINSK 73 (75)
Q Consensus 43 ~~~~~L~~L~~~t~~Yi~~n~~~l~~~~~~L 73 (75)
++++-|..|+..+...+.+|..+++++-+.|
T Consensus 151 V~~eyl~~Lv~~aN~kl~~nk~rl~r~~~~l 181 (188)
T 2dvk_A 151 VGDDALDMLIEKANTILVESRIGLDTFSREV 181 (188)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999987765
No 3
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1
Probab=65.00 E-value=10 Score=25.76 Aligned_cols=28 Identities=4% Similarity=0.139 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhc
Q psy16484 47 KLAQLRLDTDIYIRKNEAKFQAAINSKI 74 (75)
Q Consensus 47 ~L~~L~~~t~~Yi~~n~~~l~~~~~~Ll 74 (75)
.|......|...+.+|++.++++|+.|+
T Consensus 158 il~~ay~~a~~iL~~nr~~L~~lA~~Ll 185 (238)
T 2di4_A 158 IITEQYEKAKAIVEEYKEPLKAVVKKLL 185 (238)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556777899999999999999999986
No 4
>1tlj_A Hypothetical UPF0130 protein SSO0622; midwest center for structural genomics, PSI, protein structure initiative, MCSG; 2.80A {Sulfolobus solfataricus} SCOP: d.282.1.1
Probab=62.60 E-value=15 Score=24.60 Aligned_cols=31 Identities=10% Similarity=0.074 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q psy16484 43 TRPEKLAQLRLDTDIYIRKNEAKFQAAINSK 73 (75)
Q Consensus 43 ~~~~~L~~L~~~t~~Yi~~n~~~l~~~~~~L 73 (75)
++++-|..|+..+..-+.+|..+++++-+.|
T Consensus 161 V~~eyL~~Lv~~aN~kl~~nk~rl~rl~~~l 191 (213)
T 1tlj_A 161 VDKDKIKTLVNVCNEVLARGKQKMNLLKDLL 191 (213)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999999998776
No 5
>2it2_A UPF0130 protein PH1069; hypothetical protein, NPPSFA, national project on protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2drv_A 2it3_A
Probab=62.50 E-value=16 Score=24.20 Aligned_cols=31 Identities=13% Similarity=0.065 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q psy16484 43 TRPEKLAQLRLDTDIYIRKNEAKFQAAINSK 73 (75)
Q Consensus 43 ~~~~~L~~L~~~t~~Yi~~n~~~l~~~~~~L 73 (75)
++++-|..|+..+..-+.+|..+++++-+.|
T Consensus 165 V~~eyl~~Lv~~aN~kl~~n~~rl~rl~~~l 195 (200)
T 2it2_A 165 VGEEYLNKIVEIANDQMRRFKEKLKRLESKI 195 (200)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999998776
No 6
>2qg3_A UPF0130 protein AF_2059; TYW3 methyltransferase-like prrotein, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.95A {Archaeoglobus fulgidus dsm 4304}
Probab=62.16 E-value=16 Score=24.56 Aligned_cols=31 Identities=10% Similarity=-0.035 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q psy16484 43 TRPEKLAQLRLDTDIYIRKNEAKFQAAINSK 73 (75)
Q Consensus 43 ~~~~~L~~L~~~t~~Yi~~n~~~l~~~~~~L 73 (75)
++++-|..|+..+...+.+|..+++++-+.|
T Consensus 166 V~eeyL~~Lv~~aN~kl~~nk~Rl~rl~~~l 196 (208)
T 2qg3_A 166 VDDAYLSYVVRWANEKLLKGKEKLGRLQEAL 196 (208)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999998765
No 7
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=47.58 E-value=26 Score=25.95 Aligned_cols=29 Identities=0% Similarity=0.048 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhc
Q psy16484 46 EKLAQLRLDTDIYIRKNEAKFQAAINSKI 74 (75)
Q Consensus 46 ~~L~~L~~~t~~Yi~~n~~~l~~~~~~Ll 74 (75)
..|......|...+.+|++.++++|+.|+
T Consensus 424 ~~~~~~~~~~~~~l~~~~~~l~~~a~~l~ 452 (499)
T 2dhr_A 424 RLIEEQYQRVKALLLEKREVLERVAETLL 452 (499)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677888999999999999999986
No 8
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=46.38 E-value=28 Score=25.61 Aligned_cols=29 Identities=10% Similarity=0.119 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhc
Q psy16484 46 EKLAQLRLDTDIYIRKNEAKFQAAINSKI 74 (75)
Q Consensus 46 ~~L~~L~~~t~~Yi~~n~~~l~~~~~~Ll 74 (75)
..|......|...+.+|++.++++|+.|+
T Consensus 414 ~~~~~~~~~~~~~l~~~~~~l~~~a~~l~ 442 (476)
T 2ce7_A 414 KIVTNCYERAKEIIRKYRKQLDNIVEILL 442 (476)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34566667888999999999999999986
No 9
>2gpi_A Conserved hypothetical protein; transcriptional regulation of the shikimate pathway, structu genomics, joint center for structural genomics; HET: MSE; 1.60A {Shewanella loihica} SCOP: d.354.1.1
Probab=37.63 E-value=52 Score=19.17 Aligned_cols=31 Identities=10% Similarity=0.037 Sum_probs=24.0
Q ss_pred CHHHHHHH-------HHHHHHHHHHhHHHHHHHHHhhc
Q psy16484 44 RPEKLAQL-------RLDTDIYIRKNEAKFQAAINSKI 74 (75)
Q Consensus 44 ~~~~L~~L-------~~~t~~Yi~~n~~~l~~~~~~Ll 74 (75)
+.+.|.++ ..+.-.....||-.|+++|+.||
T Consensus 37 s~e~Le~~~g~~~~~~~~~l~~F~~~R~diEe~Ae~lI 74 (91)
T 2gpi_A 37 GQKVLEHLAAEKINNSEQALSLFEQFRFDIEEQAEKLI 74 (91)
T ss_dssp EHHHHHHHHTSCCCSHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred EHHHHHHHhCccCCCHHHHHHHHHHcchhHHHHHHHHH
Confidence 45666666 34557788899999999999886
No 10
>2x3m_A Hypothetical protein ORF239; unknown function; 1.45A {Pyrobaculum spherical virus}
Probab=36.53 E-value=21 Score=23.78 Aligned_cols=32 Identities=9% Similarity=0.132 Sum_probs=24.2
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHh
Q psy16484 41 DETRPEKLAQLRLDTDIYIRKNEAKFQAAINS 72 (75)
Q Consensus 41 De~~~~~L~~L~~~t~~Yi~~n~~~l~~~~~~ 72 (75)
-+++.++++-|-|-|+.|+++.++---.+++.
T Consensus 83 pnasekkmefmywytrtyleeakdirpdiada 114 (239)
T 2x3m_A 83 PNASEKKMEFMYWYTRTYLEEAKDIRPDIADA 114 (239)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHTTCCCHHHHHH
T ss_pred CCchhhhhhhhhhhHHHHHHHhhccCccHHHH
Confidence 46789999999999999999765443344443
No 11
>3f4m_A Tumor necrosis factor, alpha-induced protein 8- like protein 2; TIPE2, immune homeostasis, tnfaip8, immune system; 1.70A {Homo sapiens}
Probab=34.04 E-value=26 Score=22.66 Aligned_cols=22 Identities=32% Similarity=0.317 Sum_probs=19.7
Q ss_pred CccCCCHHHHHHHHHHHHHHHH
Q psy16484 39 DLDETRPEKLAQLRLDTDIYIR 60 (75)
Q Consensus 39 ~LDe~~~~~L~~L~~~t~~Yi~ 60 (75)
=+|+++.+-|++|-..++.|..
T Consensus 7 fIDdtsselLD~lyrl~K~~t~ 28 (161)
T 3f4m_A 7 FIDETSSEVLDELYRVSKEYTH 28 (161)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHS
T ss_pred hcCccHHHHHHHHHHHHHHHhc
Confidence 3799999999999999999995
No 12
>1v9v_A KIAA0561 protein; helix bundle, MAST205, microtubule-associated serine/threonine protein kinase, structural genomics; NMR {Homo sapiens} SCOP: a.29.10.1
Probab=31.81 E-value=25 Score=21.66 Aligned_cols=29 Identities=17% Similarity=0.139 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHH-HhHHHHHHHHHhhc
Q psy16484 46 EKLAQLRLDTDIYIR-KNEAKFQAAINSKI 74 (75)
Q Consensus 46 ~~L~~L~~~t~~Yi~-~n~~~l~~~~~~Ll 74 (75)
|||++|+.+|+.=-. +.-.-+.+++++|+
T Consensus 71 E~LEkLl~ea~erSes~~~~~v~~lvkKlL 100 (114)
T 1v9v_A 71 EKLERLLQDAHERSDSEEVSFIVQLVRKLL 100 (114)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCchhhhHHHHHHHHHHH
Confidence 678888877765432 23334556665554
No 13
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1
Probab=31.50 E-value=14 Score=21.42 Aligned_cols=33 Identities=15% Similarity=0.388 Sum_probs=26.7
Q ss_pred eEEecCCCCCCCCccCCCHHHHHHHHHHHHHHHHHh
Q psy16484 27 YYRFNPYLSEVPDLDETRPEKLAQLRLDTDIYIRKN 62 (75)
Q Consensus 27 YfRfnP~l~~~i~LDe~~~~~L~~L~~~t~~Yi~~n 62 (75)
=|+++|.|..-++..+.+-..+.+.+|+ ||..|
T Consensus 11 ~~~lS~~La~~lG~~~~sr~evvk~lW~---YIK~n 43 (93)
T 1uhr_A 11 QFKLDPRLARLLGIHTQTRPVIIQALWQ---YIKTH 43 (93)
T ss_dssp EEEECTTHHHHTCCSEEEHHHHHHHHHH---HHHHT
T ss_pred ccCcCHHHHHHHCCCccCHHHHHHHHHH---HHHhc
Confidence 5689999977788888888888888884 88766
No 14
>3fov_A UPF0102 protein RPA0323; structural genomics, APC7380, PSI-2, protein structure initi midwest center for structural genomics, MCSG; 1.88A {Rhodopseudomonas palustris}
Probab=30.69 E-value=59 Score=20.13 Aligned_cols=25 Identities=4% Similarity=0.240 Sum_probs=21.8
Q ss_pred CccCCCHHHHHHHHHHHHHHHHHhH
Q psy16484 39 DLDETRPEKLAQLRLDTDIYIRKNE 63 (75)
Q Consensus 39 ~LDe~~~~~L~~L~~~t~~Yi~~n~ 63 (75)
+..-+++.|..+|...|+.|+.+|.
T Consensus 77 p~eaV~~~K~~ri~~aA~~yL~~~~ 101 (134)
T 3fov_A 77 AAYAVTPRQQSRIVAAAEAWLSRHP 101 (134)
T ss_dssp -CCCCCHHHHHHHHHHHHHHHHHCG
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 4567899999999999999999875
No 15
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=30.18 E-value=1.3e+02 Score=21.23 Aligned_cols=36 Identities=14% Similarity=0.217 Sum_probs=23.2
Q ss_pred CCCceEEecCCCCCCCCccCCCHHHHHHHHHHHHHHHHHhHHH
Q psy16484 23 PQGVYYRFNPYLSEVPDLDETRPEKLAQLRLDTDIYIRKNEAK 65 (75)
Q Consensus 23 ~~~~YfRfnP~l~~~i~LDe~~~~~L~~L~~~t~~Yi~~n~~~ 65 (75)
|...++||+|++. .+++.++.++..-+..+.+-.++
T Consensus 420 ~~g~~iRi~p~~~-------~t~e~i~~~l~~l~~~l~~~~~~ 455 (472)
T 3hmu_A 420 HVGDRMIISPPLV-------ITPAEIDEMFVRIRKSLDEAQAE 455 (472)
T ss_dssp EETTEEEECCCTT-------CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCEEEEECCCC-------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 3338999999983 45566666666666666544333
No 16
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=29.07 E-value=11 Score=21.88 Aligned_cols=29 Identities=10% Similarity=0.028 Sum_probs=19.3
Q ss_pred CceEE--ecCCCCCCCCccCCCHHHHHHHHH
Q psy16484 25 GVYYR--FNPYLSEVPDLDETRPEKLAQLRL 53 (75)
Q Consensus 25 ~~YfR--fnP~l~~~i~LDe~~~~~L~~L~~ 53 (75)
++||| |+......+.+.+.+++.+..++.
T Consensus 47 S~yF~~~f~~~~~~~i~l~~~~~~~f~~ll~ 77 (119)
T 3b84_A 47 SHFFQSLYGDGSGGSVVLPAGFAEIFGLLLD 77 (119)
T ss_dssp CHHHHHHHTTTTCCCEEECGGGHHHHHHHHH
T ss_pred CHHHHHHHCCCCCCeEEeCCCCHHHHHHHHH
Confidence 45666 544445667888888887777653
No 17
>2kkm_A Translation machinery-associated protein 16; nucleus, structural genomics, PSI-2, protein structure initiative; NMR {Saccharomyces cerevisiae}
Probab=27.86 E-value=74 Score=19.80 Aligned_cols=26 Identities=4% Similarity=0.192 Sum_probs=18.6
Q ss_pred CCHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy16484 43 TRPEKLAQLRLDTDIYIRKNEAKFQAAIN 71 (75)
Q Consensus 43 ~~~~~L~~L~~~t~~Yi~~n~~~l~~~~~ 71 (75)
.+++-+..|+ +.||.++.+.++++-.
T Consensus 45 ~t~~e~~~lI---~~yl~R~d~ELeql~~ 70 (144)
T 2kkm_A 45 FDHAHTREFI---QSFIERDDTELDELKK 70 (144)
T ss_dssp CCHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH---HHHHhcCcHHHHHHHH
Confidence 3445555555 5799999999998753
No 18
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=26.27 E-value=63 Score=15.54 Aligned_cols=15 Identities=27% Similarity=0.485 Sum_probs=12.1
Q ss_pred CCHHHHHHHHHHHHH
Q psy16484 43 TRPEKLAQLRLDTDI 57 (75)
Q Consensus 43 ~~~~~L~~L~~~t~~ 57 (75)
-.||.|.+|+.+++.
T Consensus 12 gtpeelkklkeeakk 26 (36)
T 2ki0_A 12 GTPEELKKLKEEAKK 26 (36)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 368999999988864
No 19
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=24.53 E-value=21 Score=23.05 Aligned_cols=11 Identities=27% Similarity=0.413 Sum_probs=7.6
Q ss_pred CCCceEEecCC
Q psy16484 23 PQGVYYRFNPY 33 (75)
Q Consensus 23 ~~~~YfRfnP~ 33 (75)
....|||||=|
T Consensus 164 G~~h~Frfn~P 174 (184)
T 4egx_A 164 GKSHVFRFNHP 174 (184)
T ss_dssp TTTEEEEEECH
T ss_pred CCCCEEEECCh
Confidence 44569999743
No 20
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=24.42 E-value=1.2e+02 Score=19.73 Aligned_cols=27 Identities=0% Similarity=-0.170 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy16484 45 PEKLAQLRLDTDIYIRKNEAKFQAAIN 71 (75)
Q Consensus 45 ~~~L~~L~~~t~~Yi~~n~~~l~~~~~ 71 (75)
|+.+..++..+.+|+.+|.+..-+++.
T Consensus 196 p~~v~~~~~~a~~~~~~np~ea~~~~~ 222 (283)
T 3hn0_A 196 RIAFEDALRASCQKAVRYPKETIHSLE 222 (283)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHH
Confidence 999999999999999999988666554
No 21
>3usa_D HLA class II histocompatibility antigen, DO beta; MHC class II fold, antigen presentation enzyme and inhibitor system; HET: NAG MAN PGE; 3.20A {Homo sapiens}
Probab=23.33 E-value=52 Score=21.19 Aligned_cols=46 Identities=9% Similarity=0.130 Sum_probs=31.6
Q ss_pred CCCceEEecCCCCCCCCccCCCHHHHHHHHHHHH-HHHHHhHHHHHHHH
Q psy16484 23 PQGVYYRFNPYLSEVPDLDETRPEKLAQLRLDTD-IYIRKNEAKFQAAI 70 (75)
Q Consensus 23 ~~~~YfRfnP~l~~~i~LDe~~~~~L~~L~~~t~-~Yi~~n~~~l~~~~ 70 (75)
-|..|.||+.....=++.++. ....+-.|..+ .++++.+..++..|
T Consensus 30 ngedfi~FDsd~g~~va~t~~--g~~~a~~Wn~~~~~le~~ra~le~~C 76 (189)
T 3usa_D 30 NLEEYVRFDSDVGMFVALTKL--GQPDAEQWNSRLDLLERSRQAVDGVC 76 (189)
T ss_dssp TTEEEEEEETTTCSEEESSGG--GHHHHHHHHHCHHHHHHTTSHHHHTH
T ss_pred CCceEEEEeCCCCceecCChh--hhhhHHHhhccHHHHHHHHHHHhchh
Confidence 456799999999776666655 56666677663 56666666666655
No 22
>2dco_A S1P4 first extracellular loop peptidomimetic; coiled coil, disulfide, helix-turn-helix, 3-10 helix, membrane protein; NMR {Homo sapiens}
Probab=23.18 E-value=6.8 Score=19.01 Aligned_cols=17 Identities=18% Similarity=0.223 Sum_probs=12.7
Q ss_pred HHHhCCCCceEEecCCC
Q psy16484 18 LSDLLPQGVYYRFNPYL 34 (75)
Q Consensus 18 ~~~ll~~~~YfRfnP~l 34 (75)
=|.+|.|..=||+.|-.
T Consensus 9 dce~LSG~rTFrLaPa~ 25 (34)
T 2dco_A 9 DCEELSGARTFRLAPAQ 25 (34)
T ss_dssp HHHHHHTGGGGTSSSST
T ss_pred chhhhcCcceEEechHH
Confidence 36777778888998853
No 23
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=22.71 E-value=1.5e+02 Score=20.92 Aligned_cols=30 Identities=13% Similarity=0.109 Sum_probs=19.7
Q ss_pred CceEEecCCCCCCCCccCCCHHHHHHHHHHHHHHHHH
Q psy16484 25 GVYYRFNPYLSEVPDLDETRPEKLAQLRLDTDIYIRK 61 (75)
Q Consensus 25 ~~YfRfnP~l~~~i~LDe~~~~~L~~L~~~t~~Yi~~ 61 (75)
..++||+|++. .+++.++.++..-+..+.+
T Consensus 424 g~~iRi~p~l~-------~t~e~i~~~l~~l~~~l~~ 453 (476)
T 3i5t_A 424 GDLCVISPPLI-------ISRAQIDEMVAIMRQAITE 453 (476)
T ss_dssp TTEEEECCCTT-------CCHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCC-------CCHHHHHHHHHHHHHHHHH
Confidence 37999999984 4556666666555555543
No 24
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=22.13 E-value=2e+02 Score=19.86 Aligned_cols=34 Identities=12% Similarity=0.057 Sum_probs=22.9
Q ss_pred CCCceEEecCCCCCCCCccCCCHHHHHHHHHHHHHHHHHhH
Q psy16484 23 PQGVYYRFNPYLSEVPDLDETRPEKLAQLRLDTDIYIRKNE 63 (75)
Q Consensus 23 ~~~~YfRfnP~l~~~i~LDe~~~~~L~~L~~~t~~Yi~~n~ 63 (75)
|...++||+|++. .+++.++.++..-...+.+-.
T Consensus 417 ~~g~~iRi~~~~~-------~t~e~i~~~l~~l~~~l~~~~ 450 (459)
T 4a6r_A 417 ACGDHIVSAPPLV-------MTRAEVDEMLAVAERCLEEFE 450 (459)
T ss_dssp EETTEEEECCCTT-------CCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCC-------CCHHHHHHHHHHHHHHHHHHH
Confidence 4348999999983 455667776666666665443
No 25
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=21.76 E-value=1.4e+02 Score=20.66 Aligned_cols=28 Identities=18% Similarity=0.124 Sum_probs=18.8
Q ss_pred ceEEecCCCCCCCCccCCCHHHHHHHHHHHHHHHH
Q psy16484 26 VYYRFNPYLSEVPDLDETRPEKLAQLRLDTDIYIR 60 (75)
Q Consensus 26 ~YfRfnP~l~~~i~LDe~~~~~L~~L~~~t~~Yi~ 60 (75)
.|+||+|++. .+++.++.++..-...+.
T Consensus 427 ~~iRi~~~~~-------~t~e~i~~~l~~l~~~l~ 454 (460)
T 3gju_A 427 DILGFAPPLC-------LTREQADIVVSKTADAVK 454 (460)
T ss_dssp CEEEECCCTT-------CCHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCC-------CCHHHHHHHHHHHHHHHH
Confidence 7999999983 455666666655555443
No 26
>3brv_A Inhibitor of nuclear factor kappa-B kinase subuni; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Synthetic} PDB: 3brt_A
Probab=21.63 E-value=97 Score=16.01 Aligned_cols=26 Identities=15% Similarity=0.125 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy16484 46 EKLAQLRLDTDIYIRKNEAKFQAAIN 71 (75)
Q Consensus 46 ~~L~~L~~~t~~Yi~~n~~~l~~~~~ 71 (75)
++...|+.+.+.|..+=...++...+
T Consensus 6 ~~~~~lleEn~~~~~~L~sliqdt~~ 31 (48)
T 3brv_A 6 KKSEELVAEAHNLCTLLENAIQDTVR 31 (48)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678899999999988777777664
No 27
>2xdb_A TOXN; abortive infection, phage; HET: A23; 2.55A {Pectobacterium atrosepticum} PDB: 2xd0_A* 2xdd_A*
Probab=21.60 E-value=1.1e+02 Score=19.73 Aligned_cols=35 Identities=17% Similarity=0.235 Sum_probs=28.6
Q ss_pred CccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q psy16484 39 DLDETRPEKLAQLRLDTDIYIRKNEAKFQAAINSK 73 (75)
Q Consensus 39 ~LDe~~~~~L~~L~~~t~~Yi~~n~~~l~~~~~~L 73 (75)
++++..+.+=..|+..-..|+.+|++++..-|+.|
T Consensus 101 di~~~~d~kYk~LL~kq~~~i~~n~~~I~~kA~kL 135 (171)
T 2xdb_A 101 DLGNMPNTPYKRMLYKQLQFIRANSDKIASKSDTL 135 (171)
T ss_dssp CGGGSCCCHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred cCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44554556788999999999999999999888776
No 28
>4hv0_A AVTR; ribbon-helix-helix, DNA, transcription, viral protein; 2.60A {Acidianus filamentous virus 6}
Probab=21.50 E-value=40 Score=20.42 Aligned_cols=13 Identities=38% Similarity=0.552 Sum_probs=10.2
Q ss_pred CCceEEecCCCCC
Q psy16484 24 QGVYYRFNPYLSE 36 (75)
Q Consensus 24 ~~~YfRfnP~l~~ 36 (75)
+..|||+|..|..
T Consensus 59 ~k~y~r~~~k~~k 71 (106)
T 4hv0_A 59 GKKYYRINCKLEK 71 (106)
T ss_dssp TEEEEEECCCCCH
T ss_pred CEEEEEEEEEeec
Confidence 4469999999953
No 29
>2l60_A Peptide YY; GPCR ligand, hormone; NMR {Synthetic}
Probab=20.40 E-value=98 Score=15.61 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=18.3
Q ss_pred CccCCCHHHHHHHHHHHHHHHH
Q psy16484 39 DLDETRPEKLAQLRLDTDIYIR 60 (75)
Q Consensus 39 ~LDe~~~~~L~~L~~~t~~Yi~ 60 (75)
+=|.++||.|.+-..+-+.||-
T Consensus 12 Pg~~aspEela~Y~~~Lr~Yin 33 (41)
T 2l60_A 12 ELKKLSPEELNRYYASLRHYLN 33 (41)
T ss_dssp HHTTSCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHH
Confidence 3478899999999988888883
No 30
>3ayh_A DNA-directed RNA polymerase III subunit RPC9; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=20.14 E-value=1.2e+02 Score=18.50 Aligned_cols=29 Identities=17% Similarity=0.304 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHh-------HHHHHHHHHhh
Q psy16484 45 PEKLAQLRLDTDIYIRKN-------EAKFQAAINSK 73 (75)
Q Consensus 45 ~~~L~~L~~~t~~Yi~~n-------~~~l~~~~~~L 73 (75)
..++..+..++-.|+.+. ++.+.++.+.|
T Consensus 49 ~~~l~ti~~e~l~YL~~~p~~~~q~~e~i~~l~~~L 84 (136)
T 3ayh_A 49 CENLRTIQFEILKYLSSQGNCEGLTKERFLDCIAIF 84 (136)
T ss_dssp CHHHHHHHHHHHHHHHTTTCCTTCCHHHHHHHHHTT
T ss_pred cchHHHHHHHHHHHHHhCCCccccCHHHHHHHHHHH
Confidence 367888888889998754 77777777665
Done!