RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy16484
         (75 letters)



>1oxw_A Patatin; alpha/beta class fold with approximately three layers;
           2.20A {Solanum cardiophyllum} SCOP: c.19.1.3
          Length = 373

 Score = 45.3 bits (106), Expect = 2e-07
 Identities = 9/77 (11%), Positives = 22/77 (28%), Gaps = 2/77 (2%)

Query: 1   MVKILESATDTEGVHTCLSDLLPQGVYYRFN--PYLSEVPDLDETRPEKLAQLRLDTDIY 58
           M     S      + T    L  +  Y R           ++D+     +  L    +  
Sbjct: 277 MTDAASSYMTDYYLSTAFQALDSKNNYLRVQENALTGTTTEMDDASEANMELLVQVGENL 336

Query: 59  IRKNEAKFQAAINSKII 75
           ++K  ++       + +
Sbjct: 337 LKKPVSEDNPETYEEAL 353


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 27.0 bits (59), Expect = 0.53
 Identities = 8/40 (20%), Positives = 19/40 (47%), Gaps = 7/40 (17%)

Query: 39  DLDE---TRPEKLAQLRLDTDIYIRKNEAKFQAAINSKII 75
           DL+E    + E++ + +++     R  +  F    ++ II
Sbjct: 119 DLEEWNQRQSEQVEKNKINN----RIADKAFYQQPDADII 154


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 26.0 bits (56), Expect = 1.4
 Identities = 4/37 (10%), Positives = 10/37 (27%), Gaps = 7/37 (18%)

Query: 23  PQGVYYRFNPYLSE-------VPDLDETRPEKLAQLR 52
           P  +   +                 + +R +   +LR
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR 141



 Score = 25.2 bits (54), Expect = 2.4
 Identities = 8/25 (32%), Positives = 14/25 (56%), Gaps = 1/25 (4%)

Query: 48  LAQLRLDTDIYIRKNEAKFQAAINS 72
           L QL+     YI  N+ K++  +N+
Sbjct: 524 LQQLKFYKP-YICDNDPKYERLVNA 547


>1hdh_A Arylsulfatase; hydrolase, formylglycine hydrate; 1.3A {Pseudomonas
           aeruginosa} SCOP: c.76.1.2
          Length = 536

 Score = 24.8 bits (54), Expect = 2.8
 Identities = 9/28 (32%), Positives = 16/28 (57%)

Query: 35  SEVPDLDETRPEKLAQLRLDTDIYIRKN 62
            E+ DL +++P KLA+L      Y+ + 
Sbjct: 497 GEIHDLADSQPGKLAELIEHWKRYVSET 524


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.318    0.136    0.382 

Gapped
Lambda     K      H
   0.267   0.0501    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,102,982
Number of extensions: 52247
Number of successful extensions: 97
Number of sequences better than 10.0: 1
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 8
Length of query: 75
Length of database: 6,701,793
Length adjustment: 44
Effective length of query: 31
Effective length of database: 5,473,269
Effective search space: 169671339
Effective search space used: 169671339
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.0 bits)