RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16484
         (75 letters)



>d1oxwa_ c.19.1.3 (A:) Patatin {Heartleaf nightshade (Solanum
           cardiophyllum) [TaxId: 160510]}
          Length = 360

 Score = 45.8 bits (107), Expect = 5e-08
 Identities = 9/77 (11%), Positives = 22/77 (28%), Gaps = 2/77 (2%)

Query: 1   MVKILESATDTEGVHTCLSDLLPQGVYYRFNP--YLSEVPDLDETRPEKLAQLRLDTDIY 58
           M     S      + T    L  +  Y R           ++D+     +  L    +  
Sbjct: 266 MTDAASSYMTDYYLSTAFQALDSKNNYLRVQENALTGTTTEMDDASEANMELLVQVGENL 325

Query: 59  IRKNEAKFQAAINSKII 75
           ++K  ++       + +
Sbjct: 326 LKKPVSEDNPETYEEAL 342


>d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse
           (Mus musculus) [TaxId: 10090]}
          Length = 136

 Score = 23.1 bits (49), Expect = 4.7
 Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 9/43 (20%)

Query: 2   VKILESATDTEGVHTCLSDLLPQGVYYRFNPYLSEVPDLDETR 44
             +  +  D   V   + +LLP      F P      DL + +
Sbjct: 103 WAVYMTKPDGTFVVRTVQELLP----ASFGP-----EDLQKIQ 136


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.136    0.382 

Gapped
Lambda     K      H
   0.267   0.0548    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 267,308
Number of extensions: 10353
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 2
Length of query: 75
Length of database: 2,407,596
Length adjustment: 42
Effective length of query: 33
Effective length of database: 1,830,936
Effective search space: 60420888
Effective search space used: 60420888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.3 bits)