RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16486
(150 letters)
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein,
lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A
{Dictyostelium discoideum} PDB: 2uuv_A*
Length = 584
Score = 77.5 bits (191), Expect = 1e-17
Identities = 18/87 (20%), Positives = 32/87 (36%)
Query: 1 FSRDPEDVKNNEDKIYSIAKRYGGIPAGESNGRRGYMLTYIIAYIRDFACDYYFIGDSFE 60
F + V + ++ I + G + G+ Y + YIRDF D+ D E
Sbjct: 399 FEGPKKVVDFHRTSVFDILSKNAAFGLGSAPGKTWAEKRYDLPYIRDFLLDHNMWVDVAE 458
Query: 61 TSVPWDKTVLLCINVKKRLTRECTVSN 87
T+V + L + K+ +
Sbjct: 459 TTVSYANLQTLWKDAKQTFVKHFKDQG 485
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 38.6 bits (89), Expect = 2e-04
Identities = 14/46 (30%), Positives = 28/46 (60%)
Query: 105 RKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
RK + E++K+ +E + K E+E ++K ++ E +R+ E VE+
Sbjct: 88 RKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEK 133
Score = 34.7 bits (79), Expect = 0.005
Identities = 10/42 (23%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 109 GEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
+ + +E E +K +EE+ +K+ +E + + E+E E+
Sbjct: 75 AQADRLTQEPESIRKWREEQ-RKRLQELDAASKVMEQEWREK 115
Score = 33.2 bits (75), Expect = 0.019
Identities = 9/38 (23%), Positives = 22/38 (57%)
Query: 110 EKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEEN 147
E +K E++ ++ ++ + K E++ RE+ K++ E
Sbjct: 85 ESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEE 122
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 38.7 bits (89), Expect = 3e-04
Identities = 12/56 (21%), Positives = 24/56 (42%)
Query: 92 FRSETKKEGNLGFRKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEEN 147
FRSE K G K + EKE E ++ +E + + + + + + + +
Sbjct: 299 FRSERLKRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQMQMQGGDGDG 354
Score = 34.5 bits (78), Expect = 0.010
Identities = 11/91 (12%), Positives = 33/91 (36%), Gaps = 4/91 (4%)
Query: 64 PWDKTVLLCINVKKRLTRECTVSNGLLEFRSETKKEGNLGFRKRQ----GEKKKKNEEKE 119
PW + L + + + + T+ FR + G K + + +
Sbjct: 259 PWGVVEVENPEHNDFLKLRTMLITHMQDLQEVTQDLHYENFRSERLKRGGRKVENEDMNK 318
Query: 120 EEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
++ ++E E ++ +E + + + ++
Sbjct: 319 DQILLEKEAELRRMQEMIARMQAQMQMQMQG 349
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 36.2 bits (84), Expect = 0.003
Identities = 6/58 (10%), Positives = 17/58 (29%)
Query: 93 RSETKKEGNLGFRKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
+++ G+ + K + E + + E + + + E N
Sbjct: 903 TTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSNSDLLSILAQLTELNYNG 960
Score = 31.9 bits (73), Expect = 0.070
Identities = 9/71 (12%), Positives = 18/71 (25%), Gaps = 1/71 (1%)
Query: 76 KKRLTRECTVSNGLLEFRSETKKEGNLGFRKRQGEKKKKNEEKEEEKKKKEEEEKKKKEE 135
K+L T + L + + + E E + E + + +
Sbjct: 895 LKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDG-ECQSLEGQSNSDLLSILAQL 953
Query: 136 KEREEEKREEE 146
E E
Sbjct: 954 TELNYNGVPEL 964
Score = 25.4 bits (56), Expect = 9.6
Identities = 8/41 (19%), Positives = 12/41 (29%)
Query: 95 ETKKEGNLGFRKRQGEKKKKNEEKEEEKKKKEEEEKKKKEE 135
+T K E K E E+ +K E+
Sbjct: 969 DTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHHHHH 1009
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 34.6 bits (79), Expect = 0.006
Identities = 8/41 (19%), Positives = 16/41 (39%)
Query: 107 RQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEEN 147
++ K +E+ K+ ++ K E +R E N
Sbjct: 220 SLIQRSKCGPVGSDERVKEFKQSLIKYMETQRSYTALAEAN 260
Score = 28.5 bits (63), Expect = 0.75
Identities = 5/40 (12%), Positives = 12/40 (30%)
Query: 111 KKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
+ + + +E K+ K E ++ E
Sbjct: 220 SLIQRSKCGPVGSDERVKEFKQSLIKYMETQRSYTALAEA 259
Score = 27.7 bits (61), Expect = 1.2
Identities = 5/51 (9%), Positives = 12/51 (23%)
Query: 87 NGLLEFRSETKKEGNLGFRKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKE 137
+ + G ++ E K+ K E + +
Sbjct: 209 KNGDHYTNGLYSLIQRSKCGPVGSDERVKEFKQSLIKYMETQRSYTALAEA 259
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 33.9 bits (78), Expect = 0.015
Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 3/65 (4%)
Query: 89 LLEFRSETKKEGNLGFRKRQGEKKKKNEEK---EEEKKKKEEEEKKKKEEKEREEEKREE 145
L + + E + E K ++ E+ K+ K EK E E +
Sbjct: 906 LKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKL 965
Query: 146 ENVEE 150
+ E
Sbjct: 966 RSDVE 970
Score = 33.9 bits (78), Expect = 0.016
Identities = 7/47 (14%), Positives = 23/47 (48%)
Query: 104 FRKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
+R+ +++ K + E ++ ++ E K + +++ +E +E
Sbjct: 897 YRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKE 943
Score = 32.8 bits (75), Expect = 0.038
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 2/50 (4%)
Query: 103 GFRKRQGEKKKKNEEK--EEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
++ KK K E + E KK E K + + + +E+ +E
Sbjct: 899 RMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLL 948
Score = 32.4 bits (74), Expect = 0.043
Identities = 10/41 (24%), Positives = 21/41 (51%)
Query: 110 EKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
+ +KK E+ +K K E E+ + +++ K E+E +
Sbjct: 1004 QTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNR 1044
Score = 32.0 bits (73), Expect = 0.058
Identities = 7/45 (15%), Positives = 18/45 (40%)
Query: 105 RKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVE 149
+++ E+ K+ + E+ E + E+ + E+ E
Sbjct: 934 QRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEE 978
Score = 30.5 bits (69), Expect = 0.20
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 110 EKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEEN 147
+ +K+ + + EKK EE K K E E+ + +E+N
Sbjct: 995 KLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQN 1032
Score = 29.3 bits (66), Expect = 0.55
Identities = 7/41 (17%), Positives = 18/41 (43%)
Query: 105 RKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREE 145
+ EE + +K+ + + +KK +E ++ + E
Sbjct: 980 KNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHE 1020
Score = 29.3 bits (66), Expect = 0.57
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 111 KKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
K + E + + +KK EE K + E E+ E +
Sbjct: 994 AKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNT 1033
Score = 28.5 bits (64), Expect = 0.86
Identities = 8/41 (19%), Positives = 16/41 (39%)
Query: 110 EKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
K +K + + +KK EE K + + + +E
Sbjct: 994 AKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTL 1034
Score = 27.8 bits (62), Expect = 1.7
Identities = 8/40 (20%), Positives = 14/40 (35%)
Query: 110 EKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVE 149
+ +K E + EEE K +E+ + E
Sbjct: 960 TETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKE 999
Score = 27.8 bits (62), Expect = 1.7
Identities = 9/49 (18%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 106 KRQGEKKKKNEEKE----EEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
+ + + ++E ++ + + EKK EE + + E+ V E
Sbjct: 979 AKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSE 1027
Score = 27.8 bits (62), Expect = 1.7
Identities = 9/46 (19%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 106 KRQGEKKKKNEEKEEEKKKKEEEE-KKKKEEKEREEEKREEENVEE 150
K + E+ +++ K E+EE ++ ++ +E + E+ + E
Sbjct: 1018 KHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVE 1063
Score = 27.4 bits (61), Expect = 2.2
Identities = 6/60 (10%), Positives = 21/60 (35%)
Query: 90 LEFRSETKKEGNLGFRKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVE 149
L+ + + + + ++ + + E+ + E + +EE + + E
Sbjct: 933 LQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEE 992
Score = 26.6 bits (59), Expect = 4.2
Identities = 9/43 (20%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 105 RKRQGEKKKKNEEKEEEKKKKEEEEKKK-KEEKEREEEKREEE 146
+K E K + + E+ + +E+ K EKE + ++
Sbjct: 1007 KKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQ 1049
Score = 25.5 bits (56), Expect = 9.6
Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 7/75 (9%)
Query: 76 KKRLTRECTVSNGLLEFRSETKKEGNLGFRKRQGEKKKKNEEKEEE------KKKKEEEE 129
KK + E KE N + + E ++ ++ +E KK EE
Sbjct: 1007 KKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLV-EET 1065
Query: 130 KKKKEEKEREEEKRE 144
K+ + + E + +
Sbjct: 1066 KQLELDLNDERLRYQ 1080
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 32.9 bits (75), Expect = 0.035
Identities = 12/49 (24%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 105 RKRQGEKKKKNEEKEEEKKKKE---EEEKKKKEEKEREEEKREEENVEE 150
R E+++++++ + EKKK + + +++ EE+E +K + E V
Sbjct: 933 EARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTA 981
Score = 31.7 bits (72), Expect = 0.078
Identities = 14/74 (18%), Positives = 29/74 (39%)
Query: 76 KKRLTRECTVSNGLLEFRSETKKEGNLGFRKRQGEKKKKNEEKEEEKKKKEEEEKKKKEE 135
K++L E + + + E K++ E + E+E +K KK +E
Sbjct: 1062 KRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQKNNALKKIREL 1121
Query: 136 KEREEEKREEENVE 149
+ + +E+ E
Sbjct: 1122 ESHISDLQEDLESE 1135
Score = 31.7 bits (72), Expect = 0.083
Identities = 11/38 (28%), Positives = 23/38 (60%)
Query: 110 EKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEEN 147
+ K K+E E + + ++E+K ++E E+ + K E E+
Sbjct: 1032 KLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGES 1069
Score = 29.4 bits (66), Expect = 0.50
Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 105 RKRQGEKKKKNEEK----EEEKKKKEEEEKKKKEEKEREEEKREEE 146
+K++ E+ E EEE+ ++ + EKKK +++ + E++ EE
Sbjct: 921 KKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEE 966
Score = 29.0 bits (65), Expect = 0.56
Identities = 7/37 (18%), Positives = 23/37 (62%)
Query: 110 EKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEE 146
+KKK +++ + +++ EEE+ +++ + E+ + +
Sbjct: 948 AEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGK 984
Score = 29.0 bits (65), Expect = 0.57
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 105 RKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEE 146
+ E + + EE+EE ++ + E+KK +++ EE+ EEE
Sbjct: 926 EEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEE 967
Score = 28.6 bits (64), Expect = 0.97
Identities = 12/45 (26%), Positives = 29/45 (64%)
Query: 105 RKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVE 149
R R KK++ EE E + + EEE+++ ++ + E++K +++ ++
Sbjct: 915 RVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLD 959
Score = 28.3 bits (63), Expect = 1.0
Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 9/85 (10%)
Query: 72 CINVKKRLTRECTVSNGLLEFRSETKKEGNLGFRKRQGEKKKKNEEKEE---------EK 122
K+R + L + ++ +E NL K Q E + E +E E
Sbjct: 866 LQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQEL 925
Query: 123 KKKEEEEKKKKEEKEREEEKREEEN 147
++ E + + EE+E ++ + E
Sbjct: 926 EEILHEMEARIEEEEERSQQLQAEK 950
Score = 27.9 bits (62), Expect = 1.7
Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 105 RKRQGEKKKKNEEKEEEKKKKEEEEKKKKE-EKEREEEKREEENVEE 150
K E+K E + EEE+K K K + + + +E
Sbjct: 1000 NKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEV 1046
Score = 27.5 bits (61), Expect = 1.8
Identities = 13/79 (16%), Positives = 33/79 (41%), Gaps = 4/79 (5%)
Query: 76 KKRLTRECTVSNGLLEFRSETKKEGNLGFRKRQGEKK----KKNEEKEEEKKKKEEEEKK 131
K+ E + E ++ L K++ +++ ++ E+EE ++K + EK
Sbjct: 920 AKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKV 979
Query: 132 KKEEKEREEEKREEENVEE 150
+ K ++ E ++
Sbjct: 980 TADGKIKKMEDDILIMEDQ 998
Score = 27.5 bits (61), Expect = 1.9
Identities = 15/69 (21%), Positives = 27/69 (39%)
Query: 77 KRLTRECTVSNGLLEFRSETKKEGNLGFRKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEK 136
+ E + LE + K R+ + E+ E EK + + EK+K++
Sbjct: 1091 AKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLS 1150
Query: 137 EREEEKREE 145
E E + E
Sbjct: 1151 EELEALKTE 1159
Score = 27.5 bits (61), Expect = 2.2
Identities = 9/41 (21%), Positives = 21/41 (51%)
Query: 110 EKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
EK+K++ +E E K E E+ ++E + ++ ++
Sbjct: 1143 EKQKRDLSEELEALKTELEDTLDTTATQQELRGSDYKDDDD 1183
Score = 26.3 bits (58), Expect = 4.6
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 110 EKKKKNEEKEEEK---KKKEEEEKKKKEEKEREEEKREEENVEE 150
E+K KN K + K E E + KKEEK R+E ++ + +E
Sbjct: 1024 EEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEG 1067
Score = 26.3 bits (58), Expect = 5.8
Identities = 9/36 (25%), Positives = 15/36 (41%)
Query: 110 EKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREE 145
+ +N + +E+K EE EEEK +
Sbjct: 994 IMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKN 1029
>3pfy_A OTU domain-containing protein 5; structural genomics, structural
genomics consortium, SGC, PE C65 otubain, hydrolase;
HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*
Length = 185
Score = 32.0 bits (72), Expect = 0.038
Identities = 7/51 (13%), Positives = 13/51 (25%)
Query: 95 ETKKEGNLGFRKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREE 145
+ G + N E E E E +++E +
Sbjct: 2 HHHHHHSSGRENLYFQGAGYNSEDEYEAAAARIEAMDPATVEQQEHWFEKA 52
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 32.2 bits (74), Expect = 0.041
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 117 EKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
K E ++ EEE+ KEEKE +++ E EE
Sbjct: 216 SKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEE 249
Score = 31.0 bits (71), Expect = 0.11
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 110 EKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEE 146
+ + +EEE K+E+E+ + E EEE+++ +
Sbjct: 218 TETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPK 254
Score = 31.0 bits (71), Expect = 0.11
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 110 EKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
+ + E EEE+ KEE+E E EEE+ ++ ++
Sbjct: 217 KTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKK 257
Score = 31.0 bits (71), Expect = 0.11
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 108 QGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEE 146
K + EE EE++ +EE++ +E EEE+ E++
Sbjct: 214 WSSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKK 252
Score = 30.6 bits (70), Expect = 0.13
Identities = 9/46 (19%), Positives = 26/46 (56%)
Query: 105 RKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
+ +++ KEE++ +E +++EE+++ + K+ E+ V +
Sbjct: 219 ETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWD 264
Score = 26.4 bits (59), Expect = 3.5
Identities = 7/43 (16%), Positives = 24/43 (55%)
Query: 95 ETKKEGNLGFRKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKE 137
E + + E+K+ ++++ ++++EE++ K K+ ++
Sbjct: 218 TETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEK 260
Score = 25.2 bits (56), Expect = 8.4
Identities = 10/38 (26%), Positives = 23/38 (60%)
Query: 110 EKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEEN 147
+++K++ + E +++EEE+K K ++ E+ E N
Sbjct: 232 KEEKEDSDDEAAVEEEEEEKKPKTKKVEKTVWDWELMN 269
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 32.2 bits (73), Expect = 0.058
Identities = 11/40 (27%), Positives = 26/40 (65%)
Query: 111 KKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
+ + +++EEE++ + E + K++ E+ER+ K +E + E
Sbjct: 396 ENMRKKKEEEERRARMEAQLKEQRERERKMRKAKENSEES 435
Score = 27.2 bits (60), Expect = 2.3
Identities = 11/51 (21%), Positives = 27/51 (52%)
Query: 89 LLEFRSETKKEGNLGFRKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKERE 139
L ++ N+ +K + E++ + E + +E++++E + +K KE E
Sbjct: 385 LQAVSEAKQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKENSEES 435
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex,
cytoplasm, ribonucleoprotein, structural protein; 3.50A
{Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Length = 861
Score = 31.7 bits (71), Expect = 0.088
Identities = 9/46 (19%), Positives = 21/46 (45%)
Query: 105 RKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
Q K ++ E++ + E +K ++ E E+ ++E +E
Sbjct: 666 TNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEA 711
Score = 30.2 bits (67), Expect = 0.30
Identities = 13/54 (24%), Positives = 20/54 (37%)
Query: 93 RSETKKEGNLGFRKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEE 146
R E + K Q + E E KK +E E + + E E K ++
Sbjct: 734 RIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELEVSKAQQL 787
Score = 29.0 bits (64), Expect = 0.74
Identities = 6/46 (13%), Positives = 20/46 (43%)
Query: 105 RKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
+ E + + ++ E+E + + E+++ ++ E E +
Sbjct: 659 QLAIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARK 704
Score = 27.5 bits (60), Expect = 2.0
Identities = 14/62 (22%), Positives = 24/62 (38%)
Query: 89 LLEFRSETKKEGNLGFRKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENV 148
LLE + + + G K + E + + E E + + K + E E E + V
Sbjct: 706 LLELEAMSMAVESTGNAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKV 765
Query: 149 EE 150
E
Sbjct: 766 RE 767
Score = 26.7 bits (58), Expect = 3.7
Identities = 8/42 (19%), Positives = 18/42 (42%)
Query: 105 RKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEE 146
+ + + + + K K + + + E ER ++ RE E
Sbjct: 728 SRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREME 769
Score = 26.7 bits (58), Expect = 4.2
Identities = 8/58 (13%), Positives = 22/58 (37%)
Query: 93 RSETKKEGNLGFRKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
++E + + +G + + + + E E ++ K+ +E E + E
Sbjct: 723 KAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARAQLELE 780
Score = 25.5 bits (55), Expect = 9.5
Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 105 RKRQGEKKKKNEEKEEEKKKKEEEEK---KKKEEKEREEEKREEENVEE 150
++ K + + E+E + + E +K + + EK R+E E
Sbjct: 667 NSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMA 715
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase,
ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET:
ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Length = 773
Score = 31.1 bits (71), Expect = 0.11
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 112 KKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEE 146
K + E+ +EK + E K+ K +K+ + K+
Sbjct: 736 VKLSLERIKEKVDRLNELKQGKNKKKSKHSKKHHH 770
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A
{Geobacillus kaustophilus}
Length = 213
Score = 30.9 bits (70), Expect = 0.13
Identities = 11/55 (20%), Positives = 20/55 (36%)
Query: 96 TKKEGNLGFRKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
+ E + + E +++ +EE + EEE E+ EE E
Sbjct: 2 EQGEKQVMEQATYDEPEREQPIEEEAAPQPEEESGGVPLEEAGGEEAAEPAEKAP 56
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 30.7 bits (70), Expect = 0.17
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 109 GEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREE 145
G++ K E+ ++ +KE+ +KKE E+E E +
Sbjct: 64 GKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKN 100
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A
{Saccharomyces cerevisiae} SCOP: e.15.1.1
Length = 223
Score = 30.3 bits (68), Expect = 0.17
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 116 EEKEEEKKKKEEEEKKKKEEKEREEEK 142
+KE++K+ +E+K+ + E+E+ EE
Sbjct: 103 LQKEQKKQLTSQEKKQIRLEREKFEED 129
Score = 26.0 bits (57), Expect = 4.7
Identities = 7/24 (29%), Positives = 16/24 (66%)
Query: 111 KKKKNEEKEEEKKKKEEEEKKKKE 134
++KK +E+K+ + E EK +++
Sbjct: 106 EQKKQLTSQEKKQIRLEREKFEED 129
Score = 26.0 bits (57), Expect = 5.5
Identities = 8/28 (28%), Positives = 19/28 (67%)
Query: 117 EKEEEKKKKEEEEKKKKEEKEREEEKRE 144
+ ++E+KK+ ++KK+ ERE+ + +
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A
{Barmah forest virus}
Length = 253
Score = 30.4 bits (68), Expect = 0.19
Identities = 9/46 (19%), Positives = 22/46 (47%)
Query: 105 RKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
+K+ + +K ++ KK +++K K ++ R K E + +
Sbjct: 63 QKKPKKTPPPKPKKTQKPKKPTQKKKSKPGKRMRNCMKIENDCIFP 108
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Length = 252
Score = 30.3 bits (68), Expect = 0.21
Identities = 10/44 (22%), Positives = 18/44 (40%)
Query: 107 RQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
+ + + + EE +++ E+ EE EEE EE
Sbjct: 188 LVDRTQPWSIMPDLYFYRDPEEVEQQVAEEATTEEAGEEEAKEE 231
Score = 27.6 bits (61), Expect = 1.4
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 116 EEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
EE +++ EE +E E E ++ E E
Sbjct: 204 YRDPEEVEQQVAEEATTEEAGEEEAKEEVTEEQAE 238
Score = 25.7 bits (56), Expect = 7.2
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 116 EEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
EE E++ ++ E+ +EE + E + + E E
Sbjct: 208 EEVEQQVAEEATTEEAGEEEAKEEVTEEQAEATEW 242
Score = 25.3 bits (55), Expect = 8.3
Identities = 7/44 (15%), Positives = 17/44 (38%)
Query: 107 RQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
R+ + + + + ++ +E E++ EE EE
Sbjct: 179 REVLRLRGALVDRTQPWSIMPDLYFYRDPEEVEQQVAEEATTEE 222
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A
{Aquifex aeolicus} SCOP: d.27.1.1
Length = 112
Score = 29.2 bits (66), Expect = 0.22
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 106 KRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEK 142
G K+ E E K+ + +K+E K+ + +
Sbjct: 74 WNHGILKEVVPEGYEMKRVGDYYVFEKRESKKSKGGE 110
Score = 25.8 bits (57), Expect = 4.0
Identities = 5/30 (16%), Positives = 10/30 (33%)
Query: 105 RKRQGEKKKKNEEKEEEKKKKEEEEKKKKE 134
+ K +K+E ++ K E
Sbjct: 81 EVVPEGYEMKRVGDYYVFEKRESKKSKGGE 110
Score = 25.0 bits (55), Expect = 7.7
Identities = 4/30 (13%), Positives = 12/30 (40%)
Query: 104 FRKRQGEKKKKNEEKEEEKKKKEEEEKKKK 133
E K+ + EK++ ++ + +
Sbjct: 82 VVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 30.1 bits (68), Expect = 0.25
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 104 FRKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKERE 139
F + E +K+ E +E+ ++ K +EK +KE E++
Sbjct: 305 FLQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 29.3 bits (66), Expect = 0.42
Identities = 8/34 (23%), Positives = 23/34 (67%)
Query: 113 KKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEE 146
+ ++ +++++ EE+ ++ K KE+ E++R E+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEK 339
Score = 28.2 bits (63), Expect = 1.00
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 111 KKKKNEEKEEEKKKKEEEEKKKKEEKEREEEK 142
K+ + +E E+K + + K+K EKER E++
Sbjct: 309 VKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 26.3 bits (58), Expect = 4.9
Identities = 8/34 (23%), Positives = 19/34 (55%)
Query: 117 EKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
+ ++ +K E ++K + +EK E+E +E+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEK 339
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome,
ribosomal R ribosomal protein, STM1, eukaryotic
ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I
2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 1s1i_N 3izc_V 3izs_V
3jyw_N
Length = 184
Score = 29.5 bits (66), Expect = 0.28
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 116 EEKEEEKKKKEEEEKKKKEEKEREEEKREE 145
EKEE K E++ + ++R ++
Sbjct: 151 TEKEEAVAKAAEKKVVRLTSRQRGRIAAQK 180
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus}
PDB: 3o4x_E 2bap_D
Length = 457
Score = 29.8 bits (67), Expect = 0.30
Identities = 11/47 (23%), Positives = 28/47 (59%)
Query: 104 FRKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
F + E +K+ E +E+ ++ K +EK +KE E+++++ + ++
Sbjct: 376 FLQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNA 422
Score = 27.1 bits (60), Expect = 2.7
Identities = 15/59 (25%), Positives = 30/59 (50%)
Query: 89 LLEFRSETKKEGNLGFRKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEEN 147
L FR+ + ++R+ E+K + + +EK +KE EK++K E+ + +E
Sbjct: 369 LHNFRNMFLQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDET 427
>2zjr_S 50S ribosomal protein L25; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.53.1.1 PDB: 1njm_T* 1nwx_T* 1njp_T*
1xbp_T* 2zjp_S* 2zjq_S 1nwy_T 3cf5_S* 3dll_S* 3pio_S*
3pip_S* 1nkw_T 1sm1_T* 1yl3_V 2b66_Z 2b9n_Z 2b9p_Z
1pnu_T 1pny_T 1vor_W ...
Length = 237
Score = 28.9 bits (65), Expect = 0.46
Identities = 8/42 (19%), Positives = 13/42 (30%)
Query: 109 GEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
E EE + E + +E K E + E+
Sbjct: 191 AGLVAAGELSEEAAEAVLEGDASLEEVKAEASEDNAGTDSED 232
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_B
Length = 241
Score = 28.7 bits (64), Expect = 0.57
Identities = 9/46 (19%), Positives = 18/46 (39%)
Query: 105 RKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
R + ++ + K ++K+ E+E E EE+ E
Sbjct: 182 RGELSKDEEWEVMVDLFYHKTLPTAEQKEAEEEEGAEGAEEKVAEV 227
Score = 28.7 bits (64), Expect = 0.64
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 104 FRKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEE 146
F + ++ E +EEE + EE+ + +E E E+ +
Sbjct: 198 FYHKTLPTAEQKEAEEEEGAEGAEEKVAEVKEGEAEQNTDNKN 240
Score = 27.9 bits (62), Expect = 1.2
Identities = 7/35 (20%), Positives = 18/35 (51%)
Query: 116 EEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
E+++ ++EE + +E+ +E E+N +
Sbjct: 204 PTAEQKEAEEEEGAEGAEEKVAEVKEGEAEQNTDN 238
Score = 27.5 bits (61), Expect = 1.7
Identities = 10/66 (15%), Positives = 27/66 (40%)
Query: 85 VSNGLLEFRSETKKEGNLGFRKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKRE 144
++ + R E K+ K +++E +++E E +++ E +E + E
Sbjct: 174 IAREVKILRGELSKDEEWEVMVDLFYHKTLPTAEQKEAEEEEGAEGAEEKVAEVKEGEAE 233
Query: 145 EENVEE 150
+ +
Sbjct: 234 QNTDNK 239
>2b9s_A Topoisomerase I-like protein; vanadate complex, isomerase/DNA
complex; HET: DNA; 2.27A {Leishmania donovani}
Length = 432
Score = 28.8 bits (64), Expect = 0.60
Identities = 8/27 (29%), Positives = 18/27 (66%)
Query: 116 EEKEEEKKKKEEEEKKKKEEKEREEEK 142
++E++ + +EE+K KE+++ E E
Sbjct: 113 VQREKKLSRTKEEKKAIKEKQDAEAEP 139
Score = 25.8 bits (56), Expect = 7.2
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 111 KKKKNEEKEEEKKKKEEEEKKKKE 134
+KK + KEE+K KE+++ + +
Sbjct: 116 EKKLSRTKEEKKAIKEKQDAEAEP 139
Score = 25.8 bits (56), Expect = 7.2
Identities = 7/28 (25%), Positives = 15/28 (53%)
Query: 117 EKEEEKKKKEEEEKKKKEEKEREEEKRE 144
+ EKK +E+KK +++++ E
Sbjct: 112 LVQREKKLSRTKEEKKAIKEKQDAEAEP 139
>3qc1_A Immunoglobulin-binding protein 1; PP2A, signaling protein; 2.35A
{Mus musculus}
Length = 243
Score = 28.6 bits (63), Expect = 0.65
Identities = 10/60 (16%), Positives = 22/60 (36%)
Query: 91 EFRSETKKEGNLGFRKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
++ + ++ + E K+KKE E + + E + ++E V E
Sbjct: 153 NSAENNTASSSMAYPNLVAMASQRQAKIERYKQKKEVEHRLSALKSAVESGQADDERVRE 212
>2kqr_A Asparaginyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA
synthetase, ATP-binding, ligas nucleotide-binding,
protein biosynthesis; NMR {Brugia malayi}
Length = 113
Score = 27.7 bits (61), Expect = 0.79
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 91 EFRSETKKEGNLGFRKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREE 145
+F TKK+G + KK+ ++ E++ K E+ K EK+ E +
Sbjct: 40 DFLIRTKKDGKQVWEAASKTALKKSWKRYEQEMLKNEKVAAKMLEKDATEVGVKA 94
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP
hydrolysis, GDP, GMP, dynamin related, large GTPase
family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens}
SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A*
2bc9_A* 2d4h_A*
Length = 592
Score = 28.8 bits (63), Expect = 0.79
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 97 KKEGNLGFRKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
K E K E ++KNE+ E+K++ +E K+ EK + + + E
Sbjct: 495 KAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQER 548
Score = 27.6 bits (60), Expect = 2.1
Identities = 11/62 (17%), Positives = 28/62 (45%)
Query: 89 LLEFRSETKKEGNLGFRKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENV 148
L + + + + Q K +E + + ++ E++E+ +E ++ EK E + V
Sbjct: 481 TLTEKEKEIEVERVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRV 540
Query: 149 EE 150
+
Sbjct: 541 QL 542
Score = 27.2 bits (59), Expect = 2.5
Identities = 10/46 (21%), Positives = 25/46 (54%)
Query: 105 RKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
R Q K+ E+ E ++ + +E+++ K +E+E+ +E ++
Sbjct: 522 RSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQK 567
Score = 27.2 bits (59), Expect = 2.7
Identities = 7/46 (15%), Positives = 22/46 (47%)
Query: 105 RKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
+ + +++ E ++ +K E + + +E+ER + +E +
Sbjct: 515 QMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLALKLQEQEQL 560
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange
factor, coiled-coil, complex (HSP24/HSP70); 2.80A
{Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Length = 197
Score = 28.1 bits (63), Expect = 0.81
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 114 KNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
E+K E + EE + EE E E + E V+
Sbjct: 3 SKEQKTPEGQAPEEIIMDQHEEIEAVEPEASAEQVDP 39
Score = 27.7 bits (62), Expect = 1.3
Identities = 8/41 (19%), Positives = 15/41 (36%)
Query: 110 EKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
E+K + EE + EE + E + E+ +
Sbjct: 5 EQKTPEGQAPEEIIMDQHEEIEAVEPEASAEQVDPRDEKVA 45
Score = 25.4 bits (56), Expect = 7.7
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 117 EKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
+E+K + + ++ ++ E E E E E
Sbjct: 2 SSKEQKTPEGQAPEEIIMDQHEEIEAVEPEASAE 35
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA
complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP:
d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A*
1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A*
1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 28.6 bits (63), Expect = 0.91
Identities = 17/72 (23%), Positives = 31/72 (43%)
Query: 74 NVKKRLTRECTVSNGLLEFRSETKKEGNLGFRKRQGEKKKKNEEKEEEKKKKEEEEKKKK 133
N ++ + S L+ + + KKE R+ K + ++ K KK E KKK
Sbjct: 457 NHQRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKA 516
Query: 134 EEKEREEEKREE 145
++ E+ + E
Sbjct: 517 VQRLEEQLMKLE 528
Score = 27.0 bits (59), Expect = 3.3
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 116 EEKEEEKKKKEEEEKKKKEEKEREEEK 142
+ E K+ +EE+ K KEE E+ ++
Sbjct: 137 AQTEARKQMSKEEKLKIKEENEKLLKE 163
Score = 26.3 bits (57), Expect = 5.9
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 97 KKEGNLGFRKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEEN 147
K K+ E KKK ++ EE+ K E + +EE ++ + N
Sbjct: 498 AKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLN 548
Score = 25.9 bits (56), Expect = 6.3
Identities = 13/39 (33%), Positives = 27/39 (69%)
Query: 112 KKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
K KN++K+++ + + ++KK K+E+E++ + EEE E
Sbjct: 1 KPKNKDKDKKVPEPDNKKKKPKKEEEQKWKWWEEERYPE 39
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 28.2 bits (62), Expect = 0.92
Identities = 10/40 (25%), Positives = 24/40 (60%)
Query: 105 RKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKRE 144
+K+ ++ K ++ + ++KKK++ K K +++R K E
Sbjct: 72 KKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLE 111
Score = 28.2 bits (62), Expect = 0.96
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 105 RKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEE 146
R R ++KK K+ K KK + ++KKK++ + + + +
Sbjct: 64 RPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQR 105
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 28.0 bits (61), Expect = 0.99
Identities = 8/35 (22%), Positives = 18/35 (51%)
Query: 112 KKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEE 146
+K EE+ + ++ + K ++E + +K EE
Sbjct: 103 RKWREEQRKRLQELDAASKVMEQEWREKAKKDLEE 137
Score = 26.8 bits (58), Expect = 2.4
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 116 EEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
++ E +K EE++K+ +E + + E+E E+
Sbjct: 96 TQEPESIRKWREEQRKRLQELDAASKVMEQEWREK 130
Score = 26.8 bits (58), Expect = 2.7
Identities = 11/43 (25%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 105 RKRQGEKKKKNEEKEE-EKKKKEEEEKKKKEEKEREEEKREEE 146
RK + E++K+ +E + K ++E +K K++ E +++ E+
Sbjct: 103 RKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQ 145
Score = 25.3 bits (54), Expect = 9.1
Identities = 10/60 (16%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Query: 91 EFRSETKKEGNLGFRKRQGEKKKKNEEKEEEKKKKEEE-EKKKKEEKEREEEKREEENVE 149
E R ++ Q ++K ++ EE +++ E+ EK K + ++ ++ + +
Sbjct: 108 EQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDAD 167
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 28.4 bits (63), Expect = 1.1
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 109 GEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
GE+ + + KE E +++ E + K +K +E+ +E E V
Sbjct: 91 GERGIQAKLKELEDEQRNELVRLKYNDKIKEKFGKELEEVYN 132
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins
binding, carbohydrate binding, calcium binding,
endoplasmic reticulu; 2.57A {Mus musculus}
Length = 332
Score = 28.1 bits (62), Expect = 1.1
Identities = 7/38 (18%), Positives = 19/38 (50%)
Query: 95 ETKKEGNLGFRKRQGEKKKKNEEKEEEKKKKEEEEKKK 132
++ GN + + +K+ ++++EE++ K E
Sbjct: 294 YAEEFGNETWGVTKAAEKQMKDKQDEEQRLKLEHHHHH 331
Score = 27.7 bits (61), Expect = 1.6
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 111 KKKKNEEKEEEKKKKEEEEKKKKEEKER 138
K EK+ + K+ EE+ K +
Sbjct: 304 GVTKAAEKQMKDKQDEEQRLKLEHHHHH 331
Score = 27.0 bits (59), Expect = 2.8
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 113 KKNEEKEEEKKKKEEEEKKKKEEKEREE 140
+ E++ K K++EE++ K E
Sbjct: 304 GVTKAAEKQMKDKQDEEQRLKLEHHHHH 331
Score = 25.8 bits (56), Expect = 6.6
Identities = 7/36 (19%), Positives = 18/36 (50%)
Query: 112 KKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEEN 147
++ E K E++ K K++E++R + + +
Sbjct: 296 EEFGNETWGVTKAAEKQMKDKQDEEQRLKLEHHHHH 331
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 28.2 bits (62), Expect = 1.3
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 105 RKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEK 142
E +K+ EK + KK ++EKKK E+K++ +
Sbjct: 354 EAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDD 391
Score = 27.4 bits (60), Expect = 1.8
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 98 KEGNLGFRKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
KE L +++ +K +K + +KK+ E+KKK + E K+ + E
Sbjct: 353 KEAELKEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAEL 405
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 305
Score = 27.8 bits (61), Expect = 1.4
Identities = 7/32 (21%), Positives = 11/32 (34%)
Query: 119 EEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
EE K++EEEE + +
Sbjct: 211 PEEAKEQEEEEAALVAPDYGAVAEYAAPAADT 242
Score = 27.0 bits (59), Expect = 2.6
Identities = 7/34 (20%), Positives = 12/34 (35%)
Query: 117 EKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
+ EE K+++EEE + E
Sbjct: 210 DPEEAKEQEEEEAALVAPDYGAVAEYAAPAADTW 243
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11,
conformation, nucleotide, ATP-binding, microtubule,
motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP:
c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Length = 369
Score = 27.6 bits (62), Expect = 1.6
Identities = 8/40 (20%), Positives = 18/40 (45%)
Query: 111 KKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
KN +E + K+ K++ + +++ EE +E
Sbjct: 330 DPSKNVSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDE 369
>1zhx_A KES1 protein; oxysterol,sterol binding protein, lipid binding
protein; HET: HC3; 1.50A {Saccharomyces cerevisiae}
SCOP: d.338.1.1 PDB: 1zht_A* 1zhw_A* 1zhy_A* 1zhz_A*
3spw_A* 1zi7_A
Length = 438
Score = 27.6 bits (61), Expect = 1.9
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 127 EEEKKKKEEKEREEEKREEENVEE 150
+ K + EE +RE K EE
Sbjct: 337 AKTKTELEETQRELRKEEEAKGIS 360
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 27.6 bits (62), Expect = 1.9
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 107 RQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEE 146
K K + K+KE+ E KKE + + + E
Sbjct: 21 DMAAKMSKKKAGRGGGKRKEKLENMKKEMEINDHQLSVAE 60
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 184
Score = 27.2 bits (60), Expect = 1.9
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 116 EEKEEEKKKKEEEEKKKKEEKEREEEKR 143
EKE+ K EEE +KK+ +++ +K+
Sbjct: 151 TEKEQIVPKPEEEVAQKKKISQKKLKKQ 178
>3peh_A Endoplasmin homolog; structural genomics, structural genomics
consortium, SGC, HE protein, chaperone, ATP binding;
HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A*
Length = 281
Score = 27.2 bits (61), Expect = 2.0
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 110 EKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEE 146
K+ + + EE +K R EK+ ++
Sbjct: 240 ADIAKDMVNDPNYDSVKVEETDDPNKKTRTVEKKVKK 276
Score = 27.2 bits (61), Expect = 2.0
Identities = 5/36 (13%), Positives = 11/36 (30%)
Query: 115 NEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
E ++ + K + + K EE +
Sbjct: 229 LHENVYTEEVLADIAKDMVNDPNYDSVKVEETDDPN 264
Score = 25.6 bits (57), Expect = 7.6
Identities = 4/36 (11%), Positives = 10/36 (27%)
Query: 111 KKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEE 146
+ E+ K+ + + EE +
Sbjct: 230 HENVYTEEVLADIAKDMVNDPNYDSVKVEETDDPNK 265
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins,
transcription-activato; 2.27A {Mus musculus}
Length = 387
Score = 27.3 bits (60), Expect = 2.1
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 4/34 (11%)
Query: 116 EEKEEEKKKKEEEEKKKKEEKEREEEKREEENVE 149
E E + + K E + EK R R++ N
Sbjct: 2 EYAEHQGRIKNAREAHSQIEKRR----RDKMNSF 31
>3gdb_A Endo-D, putative uncharacterized protein SPR0440;
alpha-beta-barrels, cell WALL, peptidoglycan-anchor,
secreted, hydrolase; HET: PGE; 1.87A {Streptococcus
pneumoniae} PDB: 2xqx_A
Length = 937
Score = 27.6 bits (60), Expect = 2.1
Identities = 4/45 (8%), Positives = 15/45 (33%)
Query: 106 KRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
+ + + EE+ + E + + + ++E +
Sbjct: 84 TTETAEAASAAKPEEKASEVVAETPSAEAKPKSDKETEAKPEATN 128
Score = 27.6 bits (60), Expect = 2.1
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 109 GEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
E + E + K +E E K + + +E K E +
Sbjct: 101 SEVVAETPSAEAKPKSDKETEAKPEATNQGDESKPAAEANKT 142
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 27.5 bits (60), Expect = 2.1
Identities = 12/54 (22%), Positives = 30/54 (55%)
Query: 97 KKEGNLGFRKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
+K L + + +++ + +K E + KE EEK+++ E E+ + ++ +E+
Sbjct: 348 EKVQKLKDSEAELQRRHEQMKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQ 401
Score = 27.1 bits (59), Expect = 2.7
Identities = 12/75 (16%), Positives = 30/75 (40%)
Query: 76 KKRLTRECTVSNGLLEFRSETKKEGNLGFRKRQGEKKKKNEEKEEEKKKKEEEEKKKKEE 135
++L + + + K + + E K ++ E E ++ E + K+K +
Sbjct: 292 SRKLAAVTYNGVDNNKNKGQLTKSPLAQMEEERREHVAKMKKMEMEMEQVFEMKVKEKVQ 351
Query: 136 KEREEEKREEENVEE 150
K ++ E + E+
Sbjct: 352 KLKDSEAELQRRHEQ 366
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo
sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Length = 323
Score = 27.3 bits (60), Expect = 2.3
Identities = 6/34 (17%), Positives = 17/34 (50%)
Query: 113 KKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEE 146
+ +K+K E++ ++ + EEE+ ++
Sbjct: 284 ELALNVITKKRKGYEDDDYVSKKSKHEEEEWTDD 317
>3q6m_A Heat shock protein HSP 90-alpha; three domains, trimer of dimer,
hexamer, chaperone; 3.00A {Homo sapiens} PDB: 3q6n_A
Length = 448
Score = 27.3 bits (61), Expect = 2.4
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 110 EKKKKNEEKEEEKKKKEEEEKKKKEEKEREEE 141
K + KE + ++EEEKKK+EEK+ + E
Sbjct: 248 GKTLVSVTKEGLELPEDEEEKKKQEEKKTKFE 279
Score = 25.4 bits (56), Expect = 9.2
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 116 EEKEEEKKKKEEEEKKKKE 134
E EEEKKK+EE++ K +
Sbjct: 262 PEDEEEKKKQEEKKTKFEN 280
>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_Q 4a1c_Q 4a1e_Q
Length = 183
Score = 26.8 bits (59), Expect = 2.4
Identities = 5/28 (17%), Positives = 14/28 (50%)
Query: 116 EEKEEEKKKKEEEEKKKKEEKEREEEKR 143
+E + +K+ ++ KK K ++ +
Sbjct: 153 QEVAAKVRKEAPKDAAKKVPKTKKGKLA 180
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_e
3o58_G 3o5h_G 3u5e_F 3u5i_F
Length = 244
Score = 27.1 bits (59), Expect = 2.5
Identities = 8/40 (20%), Positives = 15/40 (37%)
Query: 111 KKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
K K ++ E+ + K +EK +R +E
Sbjct: 15 KSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKE 54
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90,
heat shock protein, ATP-binding, heat shock,
nucleotide-binding, acetylation; HET: ATP; 3.1A
{Saccharomyces cerevisiae}
Length = 677
Score = 27.0 bits (60), Expect = 2.6
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 117 EKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
KE EK+ EE+KK EEK+ EE+K E++ +
Sbjct: 210 TKEVEKEVPIPEEEKKDEEKKDEEKKDEDDKKPK 243
Score = 26.6 bits (59), Expect = 4.2
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 111 KKKKNEEKEEEKKKKEEEEKKKKE 134
K + EE +EEK ++E+E K+ +
Sbjct: 526 KDFELEETDEEKAEREKEIKEYEP 549
Score = 25.5 bits (56), Expect = 8.3
Identities = 7/32 (21%), Positives = 18/32 (56%)
Query: 110 EKKKKNEEKEEEKKKKEEEEKKKKEEKEREEE 141
K + K+ E ++ +EE+ ++++E + E
Sbjct: 518 GKTLVDITKDFELEETDEEKAEREKEIKEYEP 549
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 27.1 bits (59), Expect = 2.6
Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 7/67 (10%)
Query: 90 LEFRSETKKEGNLGFRKRQGEKKKKNEEKEEE------KKKKEEEEKKKKEEKEREEEKR 143
+ K+ + + E K EK + K +K KKE+ EEEK+
Sbjct: 782 FQMNCYAKE-DAFSYPRMYEEASGKEVEKVATAVLSTTARAKARAKKTKKEKGPNEEEKK 840
Query: 144 EEENVEE 150
+E +E
Sbjct: 841 KEHEEKE 847
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 27.0 bits (60), Expect = 2.8
Identities = 11/70 (15%), Positives = 25/70 (35%)
Query: 81 RECTVSNGLLEFRSETKKEGNLGFRKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREE 140
+ + + + +E F QG+ ++ + E + EE + K+ E
Sbjct: 124 KTVSYKDYSIFLENENILIKAKNFLVFQGDVEQIAAQSPVELSRMFEEVSGSIQYKKEYE 183
Query: 141 EKREEENVEE 150
E +E+
Sbjct: 184 ELKEKIEKLS 193
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_I 4a1c_I 4a1e_I
Length = 198
Score = 26.8 bits (59), Expect = 2.9
Identities = 8/37 (21%), Positives = 19/37 (51%)
Query: 110 EKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEE 146
E+K++ K KK ++ + +KKE + +++
Sbjct: 156 EEKRRARAKTYHDKKVKQADARKKELAAPALKAIKDK 192
>2wd6_A Agglutinin receptor; cell adhesion, secreted, V-region, cell WALL,
AG I/II protei surface adhesin, peptidoglycan-anchor;
2.30A {Streptococcus gordonii}
Length = 349
Score = 27.1 bits (59), Expect = 2.9
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 106 KRQGEKKKKNEEKEEEKKKKEEEEKKKKEEK 136
K + + K +E E E KKK++
Sbjct: 6 KYEADLAKYKKEFAAYTAALAEAESKKKQDG 36
>3hjc_A Heat shock protein 83-1; sleeping sickness, structura genomics,
stress response protein, chaperone, structural GE
consortium, SGC; 2.50A {Leishmania major}
Length = 444
Score = 26.9 bits (60), Expect = 3.0
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 110 EKKKKNEEKEEEKKKKEEEEKKKKEEKEREEE 141
+KK KE ++ EEEK+++EE++ E
Sbjct: 264 DKKFACLTKEGVHFEESEEEKQQREEEKAACE 295
Score = 25.3 bits (56), Expect = 8.8
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 116 EEKEEEKKKKEEEEKKKKE 134
EE EEEK+++EEE+ ++
Sbjct: 278 EESEEEKQQREEEKAACEK 296
>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5g_H
Length = 190
Score = 26.6 bits (58), Expect = 3.1
Identities = 5/52 (9%), Positives = 13/52 (25%)
Query: 93 RSETKKEGNLGFRKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKRE 144
+ + ++ + +K E E K+ K +
Sbjct: 99 LPKPSRTSRQVQKRPRSRTLTAVHDKILEDLVFPTEIVGKRVRYLVGGNKIQ 150
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_V 4a1c_V 4a1e_V
Length = 239
Score = 26.7 bits (58), Expect = 3.3
Identities = 5/40 (12%), Positives = 20/40 (50%)
Query: 111 KKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
K ++E+ + K ++ + + ++++ E + ++ E
Sbjct: 12 KLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAE 51
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein,
acetylation, cytoplasm, phosphorylation, polymorphism;
2.15A {Homo sapiens}
Length = 253
Score = 26.5 bits (58), Expect = 3.8
Identities = 6/37 (16%), Positives = 14/37 (37%)
Query: 110 EKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEE 146
+ + + + + EE E+EE+ E+
Sbjct: 217 RMRGTISREHPWEVMPDLYFYRDPEEIEKEEQAAAEK 253
>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large
ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila}
PDB: 4a19_E 4a1b_E 4a1d_E
Length = 191
Score = 26.2 bits (57), Expect = 3.8
Identities = 8/33 (24%), Positives = 19/33 (57%)
Query: 104 FRKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEK 136
F + + K KN K E ++++++E ++K +
Sbjct: 117 FGREKARKNHKNLFKAELTEEQKKKETERKNAR 149
>2kgl_A Mesoderm development candidate 2; MESD, LRP5/6, chaperone, YWTD,
WNT; NMR {Mus musculus} PDB: 2kmi_A 2rqk_A 2rqm_A
Length = 195
Score = 26.3 bits (57), Expect = 3.9
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 99 EGNLGFRKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREE 145
EG + K G K+K + E+ KKK+ + + + +E R +RE+
Sbjct: 148 EGQMYPGKGGGSKEKNKTKPEKAKKKEGDPKPRASKEDNRAGSRRED 194
>4fbw_A DNA repair protein RAD32; DNA double-strand break repair,
nuclease, hydrolase; HET: DNA; 2.20A
{Schizosaccharomyces pombe} PDB: 4fcx_B*
Length = 417
Score = 26.4 bits (57), Expect = 4.0
Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 38 LTYIIAYIRDFACDYYFI-GDSFETSVPWDKTVLLCINVKKRLT 80
I+ R+ D + GD F + P K + + +
Sbjct: 41 FNEILEIARERDVDMILLGGDIFHDNKPSRKALYQALRSLRLNC 84
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 421
Score = 26.4 bits (57), Expect = 4.0
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 2/52 (3%)
Query: 94 SETKKEGNLGFRKRQGEKKKKNEEKEEEK--KKKEEEEKKKKEEKEREEEKR 143
KK +K G KK K ++ KK +KK E+K EEK+
Sbjct: 367 VPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTEEKK 418
>2q2b_A Cytosolic acyl coenzyme A thioester hydrolase; ACOT7, C-terminal
domain; 2.50A {Mus musculus}
Length = 179
Score = 26.2 bits (58), Expect = 4.0
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 117 EKEEEKKKKEEEEKKKKEEKEREEEKREEE 146
E E+EKK+ EE + + + K + + E +
Sbjct: 149 ETEDEKKRFEEGKGRYLQMKAKRQGHTEPQ 178
>2cge_A ATP-dependent molecular chaperone HSP82; chaperone complex, heat
shock protein, CO-chaperone, ATP-binding, heat shock;
3.0A {Saccharomyces cerevisiae}
Length = 405
Score = 26.5 bits (59), Expect = 4.1
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 111 KKKKNEEKEEEKKKKEEEEKKKKE 134
K + EE +EEK ++E+E K+ +
Sbjct: 254 KDFELEETDEEKAEREKEIKEYEP 277
Score = 26.1 bits (58), Expect = 5.4
Identities = 7/32 (21%), Positives = 18/32 (56%)
Query: 110 EKKKKNEEKEEEKKKKEEEEKKKKEEKEREEE 141
K + K+ E ++ +EE+ ++++E + E
Sbjct: 246 GKTLVDITKDFELEETDEEKAEREKEIKEYEP 277
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 26.4 bits (58), Expect = 4.2
Identities = 11/53 (20%), Positives = 20/53 (37%)
Query: 95 ETKKEGNLGFRKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEEN 147
G ++ EE KKK ++KK K E++ ++E+
Sbjct: 8 AASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKES 60
>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein
complex, RNA-RNA complex, PROT complex, peptidyl
transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB:
1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I*
1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I*
1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...
Length = 348
Score = 26.3 bits (57), Expect = 4.4
Identities = 3/37 (8%), Positives = 17/37 (45%)
Query: 110 EKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEE 146
++ + +++ E++ +E +++ ++E
Sbjct: 302 VATEEPTDDQDDDTASEDDADADDAAEEADDDDDDDE 338
>4dgw_B PRE-mRNA-splicing factor PRP21; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 152
Score = 25.7 bits (56), Expect = 5.0
Identities = 5/47 (10%), Positives = 20/47 (42%)
Query: 89 LLEFRSETKKEGNLGFRKRQGEKKKKNEEKEEEKKKKEEEEKKKKEE 135
+ F + K+ E+ + E ++++ ++ ++ + K +
Sbjct: 60 VYSFTGQEIKKSKRTILDNCFERTQYWEFEKDKDREHDKLVELCKIQ 106
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double
chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces
cerevisiae}
Length = 800
Score = 26.3 bits (58), Expect = 5.4
Identities = 11/63 (17%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 91 EFRSETKKEGNLGFRKRQGEKKKKNEEKEEEKKKK---EEEEKKKKEEKEREEEKREEEN 147
+ + G ++ K+ E ++ + E+ + E+ER ++ EE +
Sbjct: 87 TWETYESIGQVRGLKRLDNYCKQFIIEDQQVRLDPYVTAEDIEIMDMERERRLDEFEEFH 146
Query: 148 VEE 150
V E
Sbjct: 147 VPE 149
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 26.0 bits (57), Expect = 5.6
Identities = 10/56 (17%), Positives = 16/56 (28%)
Query: 90 LEFRSETKKEGNLGFRKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREE 145
E + KKK EE++ +E E + E+ E
Sbjct: 99 YSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERE 154
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET:
ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Length = 559
Score = 26.0 bits (58), Expect = 5.6
Identities = 5/33 (15%), Positives = 14/33 (42%)
Query: 110 EKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEK 142
K ++ K +E +K +E + ++ +
Sbjct: 477 GKPFQSVSKVDESLEKLADEVDESAKEAEKALT 509
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96;
HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A*
2o1w_A 2o1t_A
Length = 666
Score = 26.1 bits (58), Expect = 5.6
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 110 EKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEK 142
K+ +N KE K + E+ K+ +E E+E E
Sbjct: 497 GKRFQNVAKEGVKFDESEKTKESREAIEKEFEP 529
Score = 25.3 bits (56), Expect = 9.4
Identities = 8/35 (22%), Positives = 20/35 (57%)
Query: 116 EEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
+E E+ K+ +E EK+ + ++K ++ +E+
Sbjct: 511 DESEKTKESREAIEKEFEPLLNWMKDKALKDKIEK 545
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_C 4a1c_C 4a1e_C
Length = 410
Score = 25.9 bits (56), Expect = 5.7
Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 2/83 (2%)
Query: 67 KTVLLCINVKKRLTRECTVSNGLLEFRSETKKEGNLGFRKRQGEKKKKNEEKEEEKKKKE 126
L +N ++ +E E ++ RK KK ++ K
Sbjct: 327 NNALFKLNPAAKIVKEQAKKAA--EASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKAN 384
Query: 127 EEEKKKKEEKEREEEKREEENVE 149
EE K +++ + + +E E
Sbjct: 385 EEAIAKARQEDADFIAQGQEIKE 407
Score = 25.9 bits (56), Expect = 6.6
Identities = 9/46 (19%), Positives = 17/46 (36%)
Query: 105 RKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
+K K K + + +K + KK + K EE + +
Sbjct: 345 KKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAK 390
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 26.0 bits (58), Expect = 6.0
Identities = 11/51 (21%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 105 RKRQGEKKKKNEEK-----EEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
+++ + + EK + E++ +E+ E KK KE++ ++ E V++
Sbjct: 408 KEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSEVTVDD 458
>3cx5_F Cytochrome B-C1 complex subunit 6; complex III, electron transfer
complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: f.28.1.1 PDB: 3cxh_F* 1ezv_H* 1kb9_F*
1p84_F* 2ibz_H* 1kyo_F*
Length = 146
Score = 25.6 bits (55), Expect = 6.4
Identities = 13/60 (21%), Positives = 33/60 (55%)
Query: 91 EFRSETKKEGNLGFRKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
E+ + K + + +++EEK E ++KEEE + E+++ +E+ ++++ +E
Sbjct: 8 EYWEQLKITVVPVVAAAEDDDNEQHEEKAAEGEEKEEENGDEDEDEDEDEDDDDDDDEDE 67
>3aq2_A 6B protein; miRNA machineries, toxin, ADP-ribosylation fold; 1.65A
{Agrobacterium vitis} PDB: 3aq3_A
Length = 207
Score = 25.6 bits (55), Expect = 6.6
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 86 SNGLLEFRSETKKEGNLGFRKRQGEKKKKNEEKEEEKKKKEEEEKKK 132
S + R++ + G+ RQG ++ E+ E + ++EEEE ++
Sbjct: 140 SQLFIRIRTDVIRGQGYGWYARQGNYVEEGEDNEGIENEEEEEETRE 186
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha,
nuclear localisation SIGN recognition, chloride
intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus}
PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I
1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A
1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ...
Length = 510
Score = 25.7 bits (56), Expect = 6.8
Identities = 6/43 (13%), Positives = 14/43 (32%)
Query: 105 RKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEEN 147
G + + KE K E + + +++K +
Sbjct: 6 HHSSGLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKAMADI 48
>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural
motif, flattened antiparallel BE barrel, flexible hinge
region, connecting domain; HET: FAD; 1.90A {Homo
sapiens} PDB: 2qtz_A*
Length = 539
Score = 25.8 bits (57), Expect = 6.8
Identities = 5/16 (31%), Positives = 6/16 (37%)
Query: 1 FSRDPEDVKNNEDKIY 16
FSRD + Y
Sbjct: 450 FSRDAPVGEEEAPAKY 465
>1hk7_A Heat shock protein HSP82; ATPase, chaperone; 2.5A {Saccharomyces
cerevisiae} SCOP: d.14.1.8
Length = 288
Score = 25.6 bits (57), Expect = 7.1
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 111 KKKKNEEKEEEKKKKEEEEKKKKE 134
K + EE +EEK ++E+E K+ +
Sbjct: 254 KDFELEETDEEKAEREKEIKEYEP 277
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting,
simibi class GTPase, GTP-BIND membrane,
nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A
2xxa_B* 1fts_A
Length = 503
Score = 25.9 bits (57), Expect = 7.5
Identities = 8/48 (16%), Positives = 22/48 (45%)
Query: 103 GFRKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
GF G +K+ ++E + + E+ ++ + + + E+ E+
Sbjct: 8 GFFSWLGFGQKEQTPEKETEVQNEQPVVEEIVQAQEPVKASEQAVEEQ 55
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_T 4a1c_T 4a1e_T
Length = 158
Score = 25.1 bits (54), Expect = 7.5
Identities = 8/40 (20%), Positives = 22/40 (55%)
Query: 111 KKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
++KN + +K + E+ ++ K++K + EK+ + +
Sbjct: 93 NRRKNLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQ 132
>3iz5_e 60S ribosomal protein L7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_e
Length = 244
Score = 25.6 bits (55), Expect = 7.8
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 111 KKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
K+++ E EKK+K EK K E + R E+ E
Sbjct: 17 KRRREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGE 56
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase,
protein binding complex; 4.80A {Homo sapiens}
Length = 149
Score = 25.4 bits (55), Expect = 7.8
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 89 LLEFRSETKKEGNLGFRKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEE 141
L+E + +KK+ + + E ++ EEKE+ + +KEE + E E +
Sbjct: 14 LMEELNRSKKDFEAIIQAKNKELEQTKEEKEKMQAQKEEVLSHMNDVLENELQ 66
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle,
dimer, chaperone, STRE response; 3.23A {Thermus
thermophilus}
Length = 177
Score = 25.3 bits (56), Expect = 8.2
Identities = 6/38 (15%), Positives = 17/38 (44%)
Query: 110 EKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEEN 147
E++ E++ + +E + +E + EE+ +
Sbjct: 2 EERNHENTLEKDLEAVGQEAQALEERLKAAEEELKGLK 39
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A
{Escherichia coli} PDB: 2iop_A
Length = 624
Score = 25.7 bits (57), Expect = 8.3
Identities = 5/33 (15%), Positives = 14/33 (42%)
Query: 110 EKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEK 142
K ++ K +E +K +E + ++ +
Sbjct: 477 GKPFQSVSKVDESLEKLADEVDESAKEAEKALT 509
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 145
Score = 25.0 bits (54), Expect = 8.8
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 105 RKRQGEKKKKNEEKEEEKKKKEEEEKKKKEE 135
RK+ E+K K+ + +EK K +EE +K +E
Sbjct: 115 RKKILERKAKSRQVGKEKGKYKEETIEKMQE 145
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.308 0.131 0.364
Gapped
Lambda K H
0.267 0.0364 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,284,591
Number of extensions: 132414
Number of successful extensions: 2548
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1935
Number of HSP's successfully gapped: 695
Length of query: 150
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 65
Effective length of database: 4,328,508
Effective search space: 281353020
Effective search space used: 281353020
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 53 (25.2 bits)