RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16486
(150 letters)
>d1k4ta3 e.15.1.1 (A:201-430) Eukaryotic DNA topoisomerase I,
N-terminal DNA-binding fragment {Human (Homo sapiens)
[TaxId: 9606]}
Length = 230
Score = 31.6 bits (72), Expect = 0.026
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 116 EEKEEEKKKKEEEEKKKKEEKEREEEK 142
+ E K+ +EE+ K KEE E+ ++
Sbjct: 111 AQTEARKQMSKEEKLKIKEENEKLLKE 137
Score = 26.6 bits (59), Expect = 1.0
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 122 KKKKEEEEKKKKEEKEREEEKREEE 146
K + E ++ KEEK + +E+ E+
Sbjct: 110 KAQTEARKQMSKEEKLKIKEENEKL 134
Score = 26.2 bits (58), Expect = 1.6
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 112 KKKNEEKEEEKKKKEEEEKKKKE 134
+K KEE+ K KEE EK KE
Sbjct: 115 ARKQMSKEEKLKIKEENEKLLKE 137
Score = 25.4 bits (56), Expect = 2.9
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 105 RKRQGEKKKKNEEKEEEKKKKEEEEKK 131
+ + K+ EEK + K++ E+ K+
Sbjct: 111 AQTEARKQMSKEEKLKIKEENEKLLKE 137
>d1oisa_ e.15.1.1 (A:) Eukaryotic DNA topoisomerase I, N-terminal
DNA-binding fragment {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 223
Score = 31.2 bits (71), Expect = 0.034
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 116 EEKEEEKKKKEEEEKKKKEEKEREEEK 142
+KE++K+ +E+K+ + E+E+ EE
Sbjct: 103 LQKEQKKQLTSQEKKQIRLEREKFEED 129
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 29.6 bits (65), Expect = 0.15
Identities = 8/40 (20%), Positives = 18/40 (45%)
Query: 111 KKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
KN +E + K+ K++ + +++ EE +E
Sbjct: 325 DPSKNVSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDE 364
>d1wvfa1 d.58.32.1 (A:243-521) Flavoprotein subunit of p-cresol
methylhydroxylase {Pseudomonas putida [TaxId: 303]}
Length = 279
Score = 28.5 bits (63), Expect = 0.30
Identities = 9/72 (12%), Positives = 18/72 (25%), Gaps = 7/72 (9%)
Query: 1 FSRDPEDVKNNEDKIYSIAKRYGGI-------PAGESNGRRGYMLTYIIAYIRDFACDYY 53
E V N + + K+ G + L + +++F +
Sbjct: 85 LYGTQEQVDVNWKIVTDVFKKLGKGRIVTQEEAGDTQPFKYRAQLMSGVPNLQEFGLYNW 144
Query: 54 FIGDSFETSVPW 65
G P
Sbjct: 145 RGGGGSMWFAPV 156
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 332
Score = 28.4 bits (63), Expect = 0.37
Identities = 7/31 (22%), Positives = 21/31 (67%)
Query: 113 KKNEEKEEEKKKKEEEEKKKKEEKEREEEKR 143
+ ++ +++++ EE+ ++ K KE+ E++R
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 27.6 bits (61), Expect = 0.56
Identities = 8/27 (29%), Positives = 19/27 (70%)
Query: 118 KEEEKKKKEEEEKKKKEEKEREEEKRE 144
+E +K++E EEK ++ + +E+ ++E
Sbjct: 304 VKENQKRRETEEKMRRAKLAKEKAEKE 330
Score = 27.2 bits (60), Expect = 0.68
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 104 FRKRQGEKKKKNEEKEEEKKKKEEEEKKKKE 134
F + E +K+ E +E+ ++ K +EK +KE
Sbjct: 300 FLQAVKENQKRRETEEKMRRAKLAKEKAEKE 330
Score = 24.9 bits (54), Expect = 4.4
Identities = 7/28 (25%), Positives = 18/28 (64%)
Query: 106 KRQGEKKKKNEEKEEEKKKKEEEEKKKK 133
++ +K+++ EEK K +E+ +K++
Sbjct: 304 VKENQKRRETEEKMRRAKLAKEKAEKER 331
Score = 24.5 bits (53), Expect = 5.9
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 110 EKKKKNEEKEEEKKKKEEEEKKKKEEKERE 139
+ K +K E ++K K KE+ E+E
Sbjct: 301 LQAVKENQKRRETEEKMRRAKLAKEKAEKE 330
>d1zhxa1 d.338.1.1 (A:2-434) Oxysterol-binding protein homolog 4,
KES1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 433
Score = 28.1 bits (62), Expect = 0.44
Identities = 8/32 (25%), Positives = 12/32 (37%)
Query: 119 EEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
+ + K + EE +RE K EE
Sbjct: 324 KLGDFNLIAKTKTELEETQRELRKEEEAKGIS 355
>d2es4d1 a.137.15.1 (D:53-332) Lipase chaperone LifO (LipB)
{Burkholderia glumae [TaxId: 337]}
Length = 280
Score = 26.9 bits (59), Expect = 0.84
Identities = 2/41 (4%), Positives = 12/41 (29%)
Query: 106 KRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEE 146
+ + E + +++ + + R++
Sbjct: 227 WQTRYQAYAAERDRIAAQGLAPQDRDARIAQLRQQTFTAPG 267
>d1jmma_ b.30.6.1 (A:) V-region of surface antigen I/II (SA I/II,
PAC) {Streptococcus mutans [TaxId: 1309]}
Length = 377
Score = 26.5 bits (58), Expect = 1.5
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 110 EKKKKNEEKEEEKKKKEEEEKKKKEE 135
+ K +E+ K E EK K E+
Sbjct: 10 KLKAYEDEQASIKAALAELEKHKNED 35
>d1f5na1 a.114.1.1 (A:284-583) Interferon-induced guanylate-binding
protein 1 (GBP1), C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 300
Score = 25.9 bits (56), Expect = 2.2
Identities = 12/75 (16%), Positives = 34/75 (45%)
Query: 76 KKRLTRECTVSNGLLEFRSETKKEGNLGFRKRQGEKKKKNEEKEEEKKKKEEEEKKKKEE 135
+ + + L E + + ++ R Q K+ E+ E ++ + +E+++
Sbjct: 210 RVKAESAQASAKMLHEMQRKNEQMMEQKERSYQEHLKQLTEKMENDRVQLLKEQERTLAL 269
Query: 136 KEREEEKREEENVEE 150
K +E+E+ +E ++
Sbjct: 270 KLQEQEQLLKEGFQK 284
Score = 23.9 bits (51), Expect = 8.5
Identities = 7/46 (15%), Positives = 25/46 (54%)
Query: 105 RKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
K + ++ + +E+E K +E+++ +E ++E + + +++
Sbjct: 250 EKMENDRVQLLKEQERTLALKLQEQEQLLKEGFQKESRIMKNEIQD 295
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 268
Score = 25.8 bits (56), Expect = 2.5
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 112 KKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEENVEE 150
+K ++E E+K E+ K E++ E R E ++
Sbjct: 214 PEKATQEEVEEKNILEKVKAAMTEEDLAELARATEELKL 252
Score = 25.8 bits (56), Expect = 2.6
Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 3/40 (7%)
Query: 110 EKKKKNEEKEEEKKKKE---EEEKKKKEEKEREEEKREEE 146
+++ EEK +K K EE+ + E + ++E
Sbjct: 217 ATQEEVEEKNILEKVKAAMTEEDLAELARATEELKLKQET 256
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 250
Score = 25.0 bits (54), Expect = 4.1
Identities = 18/82 (21%), Positives = 34/82 (41%)
Query: 49 ACDYYFIGDSFETSVPWDKTVLLCINVKKRLTRECTVSNGLLEFRSETKKEGNLGFRKRQ 108
A D E + + L I V + +S +E + T++ G R +
Sbjct: 169 AAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLK 228
Query: 109 GEKKKKNEEKEEEKKKKEEEEK 130
++ ++ +K EE++ K E EK
Sbjct: 229 QKEVEQLIKKHEEEEAKAEREK 250
>d1ofcx3 a.187.1.1 (X:697-798) HAND domain of the nucleosome
remodeling ATPase ISWI {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 102
Score = 24.0 bits (52), Expect = 4.8
Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 104 FRKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKE--REEEKREEENVEE 150
FRK G K KN E + K + EE++K +E E EEE +E+EN+
Sbjct: 50 FRKTVGYKVPKNTELGSDATKVQREEQRKIDEAEPLTEEEIQEKENLLS 98
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 24.8 bits (53), Expect = 5.4
Identities = 7/46 (15%), Positives = 16/46 (34%), Gaps = 5/46 (10%)
Query: 106 KRQGEKKKKNEEKEEEKKKKEEEEKKK-----KEEKEREEEKREEE 146
K +K++K E E K ++ + + ++ E
Sbjct: 713 KLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQEFLQRDAEA 758
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 24.9 bits (53), Expect = 5.8
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 116 EEKEEEKKKKEEEEKKKKEEKEREEEKREEENVE 149
+ EE + E+ + E E +E+ + N+E
Sbjct: 3 QRTEELLRCNEQ----QAAELETCKEQLFQSNME 32
Score = 24.5 bits (52), Expect = 6.4
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 105 RKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKER 138
R+R E + NE++ E + +E+ + ER
Sbjct: 2 RQRTEELLRCNEQQAAELE--TCKEQLFQSNMER 33
>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 24.1 bits (52), Expect = 6.1
Identities = 10/47 (21%), Positives = 20/47 (42%)
Query: 101 NLGFRKRQGEKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEEN 147
+LGF E K+ +E + K+ + + + EEE ++
Sbjct: 69 SLGFGSYISEVKEVLQECKTVALKRRKASSRLENLGIPEEELLRQQQ 115
>d3bn0a1 d.27.1.1 (A:2-102) Ribosomal protein S16 {Aquifex aeolicus
[TaxId: 63363]}
Length = 101
Score = 23.6 bits (51), Expect = 6.5
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 106 KRQGEKKKKNEEKEEEKKKKEEEEKKKKE 134
G K+ E E K+ + +K+E
Sbjct: 73 WNHGILKEVVPEGYEMKRVGDYYVFEKRE 101
>d1y7ua1 d.38.1.1 (A:8-171) Acyl-coa hydrolase BC2038 {Bacillus
cereus [TaxId: 1396]}
Length = 164
Score = 23.8 bits (51), Expect = 8.2
Identities = 6/28 (21%), Positives = 14/28 (50%)
Query: 117 EKEEEKKKKEEEEKKKKEEKEREEEKRE 144
+ EEEK+ + ++ R+ E ++
Sbjct: 130 DTEEEKESHRIAVLRAEQRHIRKAESKK 157
>d1qwza_ b.100.1.1 (A:) Sortase B {Staphylococcus aureus [TaxId:
1280]}
Length = 235
Score = 24.2 bits (52), Expect = 8.2
Identities = 8/38 (21%), Positives = 17/38 (44%)
Query: 110 EKKKKNEEKEEEKKKKEEEEKKKKEEKEREEEKREEEN 147
E K++ E+ ++K + K + + E E+ N
Sbjct: 22 EDKQERANYEKLQQKFQMLMSKHQAHVRPQFESLEKIN 59
>d3dy8a1 a.211.1.2 (A:182-505) High-affinity cGMP-specific
3',5'-cyclic phosphodiesterase 9A, PDE9A {Human (Homo
sapiens) [TaxId: 9606]}
Length = 324
Score = 24.2 bits (52), Expect = 8.3
Identities = 4/22 (18%), Positives = 14/22 (63%)
Query: 113 KKNEEKEEEKKKKEEEEKKKKE 134
++ ++ EE K+ ++ K+ ++
Sbjct: 303 WESRDRYEELKRIDDAMKELQK 324
>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 76
Score = 22.9 bits (49), Expect = 9.8
Identities = 10/24 (41%), Positives = 11/24 (45%)
Query: 13 DKIYSIAKRYGGIPAGESNGRRGY 36
D IY GG G NGR G+
Sbjct: 33 DIIYVTRVEEGGWWEGTLNGRTGW 56
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.308 0.131 0.364
Gapped
Lambda K H
0.267 0.0614 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 574,387
Number of extensions: 28393
Number of successful extensions: 551
Number of sequences better than 10.0: 1
Number of HSP's gapped: 432
Number of HSP's successfully gapped: 183
Length of query: 150
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 72
Effective length of database: 1,336,656
Effective search space: 96239232
Effective search space used: 96239232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 49 (22.9 bits)