BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1649
(170 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 514
Score = 60.1 bits (144), Expect = 5e-10, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 46 FCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIIC 104
CWLPFF + ++ ++I K ++ ++ W+GY NS NPLIY S DFR AF++++C
Sbjct: 433 LCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYCR-SPDFRIAFQELLC 490
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The
Beta2 Adrenoceptor
Length = 501
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 37 VGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFR 96
+G + CWLPFF + ++ ++I K ++ ++ W+GY NS NPLIY S DFR
Sbjct: 411 LGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYCR-SPDFR 469
Query: 97 FAFKKIIC 104
AF++++C
Sbjct: 470 IAFQELLC 477
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G
Protein- Coupled Receptor
Length = 500
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 37 VGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFR 96
+G + CWLPFF + ++ ++I K ++ ++ W+GY NS NPLIY S DFR
Sbjct: 410 LGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYCR-SPDFR 468
Query: 97 FAFKKIIC 104
AF++++C
Sbjct: 469 IAFQELLC 476
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 57.4 bits (137), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 37 VGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFR 96
+G + CWLPFF + ++ ++I K ++ ++ W+GY NS NPLIY S DFR
Sbjct: 411 LGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYCR-SPDFR 469
Query: 97 FAFKKIIC 104
AF++++C
Sbjct: 470 IAFQELLC 477
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 365
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 37 VGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFR 96
+G + CWLPFF + ++ ++I K ++ ++ W+GY NS NPLIY S DFR
Sbjct: 275 LGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYCR-SPDFR 333
Query: 97 FAFKKIIC 104
AF++++C
Sbjct: 334 IAFQELLC 341
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex
Length = 458
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 37 VGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFR 96
+G + CWLPFF + ++ ++I K ++ ++ W+GY NS NPLIY S DFR
Sbjct: 379 LGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYCR-SPDFR 437
Query: 97 FAFKKIIC 104
AF++++C
Sbjct: 438 IAFQELLC 445
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic
Receptor- Fab Complex
Length = 366
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 37 VGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFR 96
+G + CWLPFF + ++ ++I K ++ ++ W+GY NS NPLIY S DFR
Sbjct: 276 LGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYCR-SPDFR 334
Query: 97 FAFKKIIC 104
AF++++C
Sbjct: 335 IAFQELLC 342
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor
Length = 342
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 37 VGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFR 96
+G + CWLPFF + ++ ++I K ++ ++ W+GY NS NPLIY S DFR
Sbjct: 252 LGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYCR-SPDFR 310
Query: 97 FAFKKIIC 104
AF++++C
Sbjct: 311 IAFQELLC 318
>pdb|2Y00|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob92)
pdb|2Y01|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y01|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Dobutamine (Crystal
Dob102)
pdb|2Y02|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y02|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Carmoterol
pdb|2Y03|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y03|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Agonist Isoprenaline
pdb|2Y04|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|2Y04|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Partial Agonist Salbutamol
pdb|4AMI|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMI|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Bucindolol
pdb|4AMJ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
pdb|4AMJ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Biased Agonist Carvedilol
Length = 315
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 46 FCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKII 103
CWLPFF + ++ F D++P +F WLGY NSA+NP+IY S DFR AFK+++
Sbjct: 243 LCWLPFFLVNIVNVFNRDLVPDWLFVAFNWLGYANSAMNPIIYCR-SPDFRKAFKRLL 299
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|C Chain C, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2VT4|D Chain D, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Cyanopindolol
pdb|2YCW|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCW|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Carazolol
pdb|2YCX|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCX|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCZ|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCZ|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Iodocyanopindolol
pdb|2YCY|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|2YCY|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising
Mutations And Bound Antagonist Cyanopindolol
pdb|4GPO|A Chain A, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
pdb|4GPO|B Chain B, Oligomeic Turkey Beta1-adrenergic G Protein-coupled
Receptor
Length = 313
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 46 FCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKII 103
CWLPFF + ++ F D++P +F WLGY NSA+NP+IY S DFR AFK+++
Sbjct: 241 LCWLPFFLVNIVNVFNRDLVPDWLFVAFNWLGYANSAMNPIIYCR-SPDFRKAFKRLL 297
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization
Of A G Protein Coupled Receptor
Length = 309
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 37 VGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFR 96
+G + CWLPFF + ++ ++I K ++ ++ W+GY NS NPLIY S DFR
Sbjct: 219 LGIIMGTFTLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYCR-SPDFR 277
Query: 97 FAFKKIIC 104
AF++++C
Sbjct: 278 IAFQELLC 285
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
pdb|3PBL|B Chain B, Structure Of The Human Dopamine D3 Receptor In Complex
With Eticlopride
Length = 481
Score = 53.9 bits (128), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 36 VVGNSLSNPIFCWLPFFSLYLLGGFYPDI-IPKTIFNVMFWLGYCNSAVNPLIYALFSKD 94
+V L I CWLPFF ++L + +++ WLGY NSA+NP+IY F+ +
Sbjct: 402 MVAIVLGAFIVCWLPFFLTHVLNTHCQTCHVSPELYSATTWLGYVNSALNPVIYTTFNIE 461
Query: 95 FRFAFKKII 103
FR AF KI+
Sbjct: 462 FRKAFLKIL 470
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|B Chain B, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|C Chain C, Structure Of The M3 Muscarinic Acetylcholine Receptor
pdb|4DAJ|D Chain D, Structure Of The M3 Muscarinic Acetylcholine Receptor
Length = 479
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 45 IFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKK-II 103
I W P+ + L+ F IPKT +N+ +WL Y NS VNP+ YAL +K FR FK ++
Sbjct: 384 IITWTPYNIMVLVNTFCDSCIPKTYWNLGYWLCYINSTVNPVCYALCNKTFRTTFKTLLL 443
Query: 104 CKC 106
C+C
Sbjct: 444 CQC 446
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex
With Doxepin
Length = 452
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 41/67 (61%)
Query: 37 VGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFR 96
+G ++ I CW+P+F +++ F + + + WLGY NS +NPLIY L +++F+
Sbjct: 375 LGFIMAAFILCWIPYFIFFMVIAFCKNCCNEHLHMFTIWLGYINSTLNPLIYPLCNENFK 434
Query: 97 FAFKKII 103
FK+I+
Sbjct: 435 KTFKRIL 441
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine
Receptor Bound To An Antagonist
Length = 467
Score = 44.7 bits (104), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%)
Query: 45 IFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKII 103
I W P+ + L+ F IP T++ + +WL Y NS +NP YAL + F+ FK ++
Sbjct: 398 IITWAPYNVMVLINTFCAPCIPNTVWTIGYWLCYINSTINPACYALCNATFKKTFKHLL 456
>pdb|2KS9|A Chain A, Solution Conformation Of Substance P In Water Complexed
With Nk1r
pdb|2KSA|A Chain A, Substance P In DmpcCHAPS ISOTROPIC Q0.25 BICELLES AS A
LIGAND FOR Nk1r
pdb|2KSB|A Chain A, Substance P In Isotropic Q0.25 DmpcCHAPSGM1 BICELLES AS A
LIGAND For Nk1r
Length = 364
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 5/94 (5%)
Query: 47 CWLPFFSLYLLGGFYPDIIPKT----IFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKI 102
CWLPF +LL PD+ K ++ + WL ++ NP+IY + FR FK
Sbjct: 260 CWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLGFKHA 319
Query: 103 I-CKCFCAQNTNLRHNTSSKRRFRRDSNQSQVSK 135
C F + S R + + +VS+
Sbjct: 320 FRCCPFISAGDYEGLEMKSTRYLQTQGSVYKVSR 353
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine
Receptor Bound To Zm241385.
pdb|3QAK|A Chain A, Agonist Bound Structure Of The Human Adenosine A2a
Receptor
Length = 488
Score = 39.7 bits (91), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 46 FCWLPFFSLYLLGGFYPDI--IPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKII 103
CWLP + F PD P + + L + NS VNP IYA ++FR F+KII
Sbjct: 406 LCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKII 465
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In
Complex With Zm241385 At 1.8a Resolution
Length = 447
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 46 FCWLPFFSLYLLGGFYPDI--IPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKII 103
CWLP + F PD P + + L + NS VNP IYA ++FR F+KII
Sbjct: 365 LCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKII 424
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A
Morphinan Antagonist
Length = 464
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 47 CWLPFFSLYLLGGFYPDIIPKTIFNVMFW-----LGYCNSAVNPLIYALFSKDFRFAFKK 101
CW P ++ IP+T F + W LGY NS +NP++YA ++F+ F++
Sbjct: 395 CWTPIHIYVIIKALIT--IPETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRCFRE 452
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor
pdb|3REY|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Xac
pdb|3RFM|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
Caffeine
pdb|3UZA|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
6-(2,6-
Dimethylpyridin-4-Yl)-5-Phenyl-1,2,4-Triazin-3-Amine
pdb|3UZC|A Chain A, Thermostabilised Adenosine A2a Receptor In Complex With
4-(3-Amino-5- Phenyl-1,2,4-Triazin-6-Yl)-2-Chlorophenol
Length = 329
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 46 FCWLPFFSLYLLGGFYPDI--IPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKII 103
CWLP + F PD P + + L + NS VNP IYA ++FR F+KII
Sbjct: 244 LCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLAHTNSVVNPFIYAYRIREFRQTFRKII 303
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 2.7 A Resolution
pdb|3VGA|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An
Allosteric Inverse-Agonist Antibody At 3.1 A Resolution
Length = 326
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 46 FCWLPFFSLYLLGGFYPDI--IPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKII 103
CWLP + F PD P + + L + NS VNP IYA ++FR F+KII
Sbjct: 244 LCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKII 303
>pdb|3V2W|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
3.35a
pdb|3V2Y|A Chain A, Crystal Structure Of A Lipid G Protein-Coupled Receptor At
2.80a
Length = 520
Score = 37.7 bits (86), Expect = 0.003, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 41 LSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWL--GYCNSAVNPLIYALFSKDFRFA 98
LS I CW P F L LL +F ++L NS NP+IY L +K+ R A
Sbjct: 427 LSVFIACWAPLFILLLLDVGCKVKTCDILFRAEYFLVLAVLNSGTNPIIYTLTNKEMRRA 486
Query: 99 FKKII 103
F +I+
Sbjct: 487 FIRIM 491
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound
pdb|2YDV|A Chain A, Thermostabilised Human A2a Receptor With Neca Bound
Length = 325
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 46 FCWLPFFSLYLLGGFYPDI--IPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKII 103
CWLP + F PD P + + L + NS VNP IYA ++FR F+KII
Sbjct: 244 LCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKII 303
>pdb|4EA3|A Chain A, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A
PEPTIDE Mimetic
Length = 434
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 47 CWLPFFSLYLLGGFYPDIIPKTIFNVMFW---LGYCNSAVNPLIYALFSKDFRFAFKKII 103
CW P L G +T ++ + LGY NS +NP++YA ++F+ F+K
Sbjct: 349 CWTPVQVFVLAQGLGVQPSSETAVAILRFCTALGYVNSCLNPILYAFLDENFKACFRKFC 408
Query: 104 C 104
C
Sbjct: 409 C 409
>pdb|2KOE|A Chain A, Human Cannabinoid Receptor 1 - Helix 78 PEPTIDE
Length = 40
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 68 TIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKI 102
T+F L NS VNP+IYAL SKD R AF+ +
Sbjct: 1 TVFAFASMLCLLNSTVNPIIYALRSKDLRHAFRSM 35
>pdb|4GRV|A Chain A, The Crystal Structure Of The Neurotensin Receptor Nts1 In
Complex With Neurotensin (8-13)
Length = 510
Score = 33.9 bits (76), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 9/72 (12%)
Query: 45 IFCWLPFFSLYLLGGFYPDIIPKT-IFNVMFW-------LGYCNSAVNPLIYALFSKDFR 96
+ CWLP+ L+ + D T +F+ + L Y +SA+NP++Y L S +FR
Sbjct: 419 VVCWLPYHVRRLMFCYISDEQWTTFLFDFYHYFYMLTNALAYASSAINPILYNLVSANFR 478
Query: 97 FAFKKIICKCFC 108
F + C C
Sbjct: 479 QVFLSTLA-CLC 489
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To
Naltrindole
Length = 461
Score = 33.1 bits (74), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 47 CWLPFFSLYLLGGFYP----DIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKI 102
CW P ++ D + ++ LGY NS++NP++YA ++F+ F++
Sbjct: 392 CWAPIHIFVIVWTLVDINRRDPLVVAALHLCIALGYANSSLNPVLYAFLDENFKRCFRQ- 450
Query: 103 ICKCFCAQN 111
+C+ C +
Sbjct: 451 LCRTPCGRQ 459
>pdb|2LNL|A Chain A, Structure Of Human Cxcr1 In Phospholipid Bilayers
Length = 296
Score = 33.1 bits (74), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 76 LGYCNSAVNPLIYALFSKDFRFAFKKII 103
LG+ +S +NP+IYA ++FR F KI+
Sbjct: 265 LGFLHSCLNPIIYAFIGQNFRHGFLKIL 292
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
pdb|4DJH|B Chain B, Structure Of The Human Kappa Opioid Receptor In Complex
With Jdtic
Length = 480
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 47 CWLP---FFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKII 103
CW P F + LG + + LGY NS++NP++YA ++F+ F+
Sbjct: 408 CWTPIHIFILVEALGSTSHSTAALSSYYFCIALGYTNSSLNPILYAFLDENFKRCFRDF- 466
Query: 104 CKCFCAQNTNLRHNTS 119
CF + R +TS
Sbjct: 467 --CFPLKMRMERQSTS 480
>pdb|3UMF|A Chain A, Schistosoma Mansoni Adenylate Kinase
Length = 217
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 7/50 (14%)
Query: 94 DFRFAFKKIICKCFCAQNTNLRHNTSSKRRFRR-------DSNQSQVSKR 136
D F+K +C C C N ++ KR +R D N+ + KR
Sbjct: 121 DQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRAETSNRVDDNEETIVKR 170
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,963,001
Number of Sequences: 62578
Number of extensions: 176030
Number of successful extensions: 275
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 232
Number of HSP's gapped (non-prelim): 37
length of query: 170
length of database: 14,973,337
effective HSP length: 92
effective length of query: 78
effective length of database: 9,216,161
effective search space: 718860558
effective search space used: 718860558
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)