Query psy1649
Match_columns 170
No_of_seqs 116 out of 1937
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 22:36:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1649.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1649hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4219|consensus 99.8 1E-20 2.2E-25 149.7 9.9 87 26-112 252-342 (423)
2 PHA03234 DNA packaging protein 99.8 1.5E-18 3.2E-23 138.6 10.2 79 28-106 230-317 (338)
3 PHA03235 DNA packaging protein 99.8 3.4E-18 7.5E-23 139.6 11.4 82 29-110 238-328 (409)
4 KOG4220|consensus 99.8 4.5E-19 9.8E-24 140.6 3.6 83 27-109 409-491 (503)
5 PHA02834 chemokine receptor-li 99.7 3.8E-17 8.1E-22 129.7 5.9 78 29-106 223-310 (323)
6 PHA02638 CC chemokine receptor 99.7 4.3E-16 9.3E-21 127.6 10.0 80 28-107 306-399 (417)
7 PHA03087 G protein-coupled che 99.6 1.5E-14 3.2E-19 115.1 9.2 81 28-108 237-326 (335)
8 PF00001 7tm_1: 7 transmembran 99.3 2.7E-11 5.8E-16 91.0 9.5 65 24-88 191-257 (257)
9 PF10324 7TM_GPCR_Srw: Serpent 98.8 1.1E-08 2.3E-13 81.0 7.1 78 28-105 235-317 (318)
10 KOG2087|consensus 98.7 3.4E-10 7.4E-15 89.3 -3.7 79 31-109 231-310 (363)
11 PF10320 7TM_GPCR_Srsx: Serpen 98.0 9.2E-06 2E-10 62.7 4.2 77 27-103 179-257 (257)
12 PF10323 7TM_GPCR_Srv: Serpent 97.5 0.00059 1.3E-08 53.4 8.5 81 23-104 201-282 (283)
13 PF11970 Git3_C: G protein-cou 97.5 0.00065 1.4E-08 42.6 6.9 65 29-93 6-72 (76)
14 PF05296 TAS2R: Mammalian tast 97.0 0.0072 1.6E-07 47.8 9.6 74 30-106 229-302 (303)
15 PF05462 Dicty_CAR: Slime mold 96.5 0.049 1.1E-06 43.2 10.3 71 37-109 204-274 (303)
16 PF02101 Ocular_alb: Ocular al 95.9 0.038 8.3E-07 44.7 7.0 26 34-59 243-268 (405)
17 PF10321 7TM_GPCR_Srt: Serpent 95.9 0.0078 1.7E-07 47.9 3.1 72 27-104 235-306 (313)
18 PF10328 7TM_GPCR_Srx: Serpent 95.4 0.069 1.5E-06 41.4 6.8 76 22-102 197-272 (274)
19 PF10317 7TM_GPCR_Srd: Serpent 95.3 0.084 1.8E-06 41.4 7.2 74 27-101 219-292 (292)
20 PF10327 7TM_GPCR_Sri: Serpent 94.6 0.11 2.3E-06 41.2 6.0 75 23-98 228-302 (303)
21 PF10318 7TM_GPCR_Srh: Serpent 93.3 0.69 1.5E-05 36.2 8.3 78 26-105 224-302 (302)
22 KOG2575|consensus 89.1 0.44 9.5E-06 39.2 3.2 25 30-54 254-278 (510)
23 PF03402 V1R: Vomeronasal orga 88.6 0.3 6.6E-06 38.0 2.0 71 27-99 193-263 (265)
24 KOG4564|consensus 87.3 1.6 3.5E-05 36.7 5.6 71 30-107 349-421 (473)
25 PF03125 Sre: C. elegans Sre G 86.8 13 0.00029 30.1 10.6 43 66-108 282-324 (365)
26 KOG4193|consensus 85.1 9 0.00019 33.5 9.2 64 32-104 514-580 (610)
27 PF02118 Srg: Srg family chemo 84.4 8.6 0.00019 29.4 8.2 70 28-98 204-274 (275)
28 PF10319 7TM_GPCR_Srj: Serpent 79.9 7.3 0.00016 31.1 6.2 71 27-98 238-309 (310)
29 PF09889 DUF2116: Uncharacteri 73.4 9 0.0002 22.7 3.9 23 27-49 32-54 (59)
30 PF05393 Hum_adeno_E3A: Human 70.9 4.9 0.00011 25.7 2.5 17 33-49 40-56 (94)
31 PF10326 7TM_GPCR_Str: Serpent 67.4 1.2 2.7E-05 34.9 -0.9 68 31-100 239-307 (307)
32 PF04238 DUF420: Protein of un 67.2 32 0.0007 23.9 6.2 70 28-97 32-102 (133)
33 PHA02849 putative transmembran 65.2 13 0.00027 23.3 3.4 26 35-60 16-41 (82)
34 PHA02657 hypothetical protein; 65.0 12 0.00026 23.8 3.4 25 35-59 26-50 (95)
35 COG5058 LAG1 Protein transport 65.0 27 0.00058 28.2 6.0 66 29-94 229-297 (395)
36 PF03155 Alg6_Alg8: ALG6, ALG8 64.6 8.6 0.00019 32.5 3.5 25 29-53 219-243 (469)
37 KOG4219|consensus 64.0 83 0.0018 26.2 8.8 85 19-103 248-337 (423)
38 PF06072 Herpes_US9: Alphaherp 62.1 31 0.00066 20.4 5.2 28 30-57 28-56 (60)
39 KOG2927|consensus 59.2 25 0.00054 28.5 5.0 62 31-92 189-251 (372)
40 COG4068 Uncharacterized protei 58.1 22 0.00048 21.0 3.4 9 43-51 54-62 (64)
41 PF14163 SieB: Superinfection 57.9 53 0.0012 23.0 6.2 69 36-104 2-77 (151)
42 PF10854 DUF2649: Protein of u 56.9 24 0.00052 20.9 3.4 22 33-54 38-59 (67)
43 PF10292 7TM_GPCR_Srab: Serpen 56.1 1E+02 0.0022 24.5 9.8 78 27-104 225-305 (324)
44 PHA00646 hypothetical protein 55.5 19 0.00042 21.3 2.9 21 33-53 36-56 (65)
45 PRK13735 conjugal transfer mat 55.4 55 0.0012 30.4 7.1 27 31-57 322-348 (942)
46 COG1687 AzlD Predicted branche 55.4 17 0.00037 24.1 2.9 23 33-55 6-28 (106)
47 PF03839 Sec62: Translocation 54.4 30 0.00066 26.3 4.6 61 31-91 110-171 (224)
48 KOG3827|consensus 53.3 5.7 0.00012 32.5 0.6 30 31-60 60-89 (400)
49 PF02532 PsbI: Photosystem II 51.8 35 0.00076 17.9 3.4 16 33-48 3-18 (36)
50 PF13153 DUF3985: Protein of u 51.5 38 0.00082 18.2 3.9 27 33-59 3-29 (44)
51 TIGR00869 sec62 protein transl 50.5 27 0.00058 26.7 3.8 64 30-93 117-181 (232)
52 TIGR02230 ATPase_gene1 F0F1-AT 50.3 71 0.0015 21.0 8.6 59 29-87 34-94 (100)
53 PF15188 CCDC-167: Coiled-coil 50.1 15 0.00032 23.5 2.0 17 35-51 68-84 (85)
54 COG2322 Predicted membrane pro 49.5 59 0.0013 23.6 5.1 63 28-90 73-136 (177)
55 PF04505 Dispanin: Interferon- 49.5 30 0.00066 21.7 3.4 19 42-60 24-42 (82)
56 TIGR00934 2a38euk potassium up 45.9 84 0.0018 28.6 6.6 32 29-60 443-474 (800)
57 COG1823 Predicted Na+/dicarbox 43.9 1.6E+02 0.0036 24.5 7.4 33 29-61 217-249 (458)
58 PF00375 SDF: Sodium:dicarboxy 43.1 1.3E+02 0.0028 24.7 7.0 74 31-104 166-247 (390)
59 PF06210 DUF1003: Protein of u 42.5 76 0.0017 21.1 4.6 57 36-96 5-62 (108)
60 TIGR01912 TatC-Arch Twin argin 41.4 60 0.0013 24.8 4.6 30 29-58 9-38 (237)
61 PF10601 zf-LITAF-like: LITAF- 41.0 32 0.0007 20.9 2.5 10 45-54 43-52 (73)
62 KOG1726|consensus 40.3 73 0.0016 24.3 4.7 18 36-53 46-63 (225)
63 PF09125 COX2-transmemb: Cytoc 38.6 63 0.0014 17.1 4.0 22 25-46 8-29 (38)
64 PF12609 DUF3774: Wound-induce 38.5 4.7 0.0001 25.4 -1.6 9 42-50 71-79 (79)
65 COG1983 PspC Putative stress-r 38.3 76 0.0016 19.5 3.7 32 30-61 28-59 (70)
66 PHA03235 DNA packaging protein 38.1 2.3E+02 0.005 23.4 9.8 36 68-103 290-325 (409)
67 PF06570 DUF1129: Protein of u 37.8 1.1E+02 0.0024 22.6 5.4 14 79-92 174-187 (206)
68 PF11119 DUF2633: Protein of u 37.5 71 0.0015 18.9 3.4 28 30-57 6-33 (59)
69 COG3821 Predicted membrane pro 36.2 27 0.00058 26.2 1.8 17 38-54 7-23 (234)
70 KOG4686|consensus 36.0 69 0.0015 26.0 4.1 21 34-54 266-286 (459)
71 PF14257 DUF4349: Domain of un 35.4 50 0.0011 25.4 3.4 26 30-55 225-250 (262)
72 smart00714 LITAF Possible memb 35.4 49 0.0011 19.7 2.6 12 43-54 35-46 (67)
73 KOG1341|consensus 35.3 1.3E+02 0.0027 26.9 5.8 32 28-59 454-485 (854)
74 PHA02681 ORF089 virion membran 34.9 69 0.0015 20.3 3.2 23 35-57 5-27 (92)
75 PF11014 DUF2852: Protein of u 33.2 73 0.0016 21.6 3.4 20 36-56 11-30 (115)
76 PF10445 DUF2456: Protein of u 31.8 87 0.0019 20.4 3.5 24 30-53 26-49 (94)
77 PF13071 DUF3935: Protein of u 31.7 1.2E+02 0.0025 18.1 3.6 28 34-61 4-31 (68)
78 PF05297 Herpes_LMP1: Herpesvi 31.0 16 0.00035 28.9 0.0 27 68-94 136-162 (381)
79 PF12751 Vac7: Vacuolar segreg 29.1 1E+02 0.0022 25.5 4.2 15 32-46 298-312 (387)
80 PF14257 DUF4349: Domain of un 28.0 1.2E+02 0.0026 23.3 4.3 31 30-60 228-258 (262)
81 COG5346 Predicted membrane pro 27.9 2.1E+02 0.0045 19.7 5.4 21 28-48 81-101 (136)
82 cd08050 TAF6 TATA Binding Prot 27.6 1.4E+02 0.003 24.2 4.8 48 47-94 210-271 (343)
83 PF05399 EVI2A: Ectropic viral 27.2 1.2E+02 0.0027 22.8 4.0 20 31-50 128-147 (227)
84 PF12911 OppC_N: N-terminal TM 26.9 1.3E+02 0.0027 16.9 4.1 21 32-52 18-38 (56)
85 PHA03234 DNA packaging protein 26.9 3.3E+02 0.0072 21.8 8.6 43 68-110 283-325 (338)
86 PF03317 ELF: ELF protein; In 26.9 95 0.0021 23.3 3.3 10 47-56 56-65 (284)
87 PF13800 Sigma_reg_N: Sigma fa 26.8 1.3E+02 0.0028 19.2 3.8 18 32-50 12-29 (96)
88 PF09726 Macoilin: Transmembra 26.7 1.9E+02 0.0041 26.1 5.7 17 37-53 80-98 (697)
89 CHL00024 psbI photosystem II p 26.4 9.4 0.0002 20.0 -1.4 13 35-47 5-17 (36)
90 PLN00165 hypothetical protein; 26.0 11 0.00024 24.2 -1.4 9 42-50 79-87 (88)
91 PRK09731 putative general secr 25.7 1.2E+02 0.0025 22.3 3.7 27 27-53 33-62 (178)
92 PF07423 DUF1510: Protein of u 24.9 1.3E+02 0.0027 22.9 3.8 12 32-43 17-28 (217)
93 PF15086 UPF0542: Uncharacteri 24.7 1.1E+02 0.0024 18.9 2.8 12 44-55 26-37 (74)
94 PF11298 DUF3099: Protein of u 24.2 1.8E+02 0.004 17.9 4.7 26 28-53 15-40 (73)
95 PF08372 PRT_C: Plant phosphor 24.1 1.6E+02 0.0034 21.1 4.0 23 36-58 101-123 (156)
96 PF11812 DUF3333: Domain of un 23.7 2.6E+02 0.0055 20.0 5.0 26 28-53 12-37 (155)
97 PF04678 DUF607: Protein of un 23.5 2.9E+02 0.0063 20.0 6.8 25 66-91 119-143 (180)
98 PF07010 Endomucin: Endomucin; 23.1 76 0.0016 24.3 2.3 9 50-58 204-212 (259)
99 PF15020 CATSPERD: Cation chan 22.7 2E+02 0.0044 25.9 5.1 37 33-69 689-725 (733)
100 PLN03190 aminophospholipid tra 22.7 2.3E+02 0.005 27.2 5.8 71 27-99 924-997 (1178)
101 KOG2576|consensus 22.5 97 0.0021 25.9 3.0 25 28-52 218-242 (500)
102 PF04506 Rft-1: Rft protein; 22.4 5.2E+02 0.011 22.5 8.1 62 32-93 346-414 (549)
103 PRK10697 DNA-binding transcrip 22.4 2.3E+02 0.005 19.2 4.4 31 30-60 32-62 (118)
104 PF12166 DUF3595: Protein of u 22.3 81 0.0018 26.1 2.6 28 34-61 65-92 (422)
105 PRK01663 C4-dicarboxylate tran 22.3 4.7E+02 0.01 21.9 7.9 29 33-61 180-208 (428)
106 KOG1558|consensus 22.1 1.4E+02 0.003 24.2 3.8 27 29-55 16-42 (327)
107 COG3190 FliO Flagellar biogene 21.6 1E+02 0.0022 21.6 2.5 19 33-51 28-46 (137)
108 PF10624 TraS: Plasmid conjuga 21.5 3E+02 0.0064 19.3 4.9 12 76-87 69-80 (164)
109 PF01679 Pmp3: Proteolipid mem 21.2 76 0.0016 18.1 1.6 23 35-57 25-47 (51)
110 PRK14710 hypothetical protein; 20.7 1.4E+02 0.003 18.3 2.7 22 31-52 9-30 (86)
111 COG4818 Predicted membrane pro 20.7 2.6E+02 0.0056 18.3 5.1 25 28-52 34-58 (105)
112 COG2807 CynX Cyanate permease 20.3 3.7E+02 0.0081 22.4 5.9 68 28-95 273-360 (395)
113 PLN00082 photosystem II reacti 20.3 91 0.002 18.7 1.8 19 36-54 34-52 (67)
114 PF11395 DUF2873: Protein of u 20.1 1.6E+02 0.0034 15.6 2.5 12 42-53 7-18 (43)
No 1
>KOG4219|consensus
Probab=99.84 E-value=1e-20 Score=149.66 Aligned_cols=87 Identities=22% Similarity=0.515 Sum_probs=75.8
Q ss_pred hhhhhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCC----CchHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHHHHH
Q psy1649 26 LALGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPD----IIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKK 101 (170)
Q Consensus 26 ~~~~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~----~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~ 101 (170)
..+.++|++||+++||++|.|||+|||++.++....++ .....++....|||++|+|+||+||+++|++||.+|++
T Consensus 252 ~~kak~K~vkmliiVV~~FaicWlPyh~y~il~~~~~~i~~~k~i~~vyl~~~WLaMSst~yNPiIY~~lN~Rfr~gf~~ 331 (423)
T KOG4219|consen 252 QLKAKKKVVKMLIIVVVIFAICWLPYHIYFILNATNPEINRKKFIQQVYLAIYWLAMSSTCYNPIIYCFLNKRFRGGFRR 331 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccHhhhhhHHHHHHHHhh
Confidence 44556789999999999999999999999999876533 45568899999999999999999999999999999999
Q ss_pred HHHhhhccCCC
Q psy1649 102 IICKCFCAQNT 112 (170)
Q Consensus 102 ~~~~~~~~~~~ 112 (170)
.|++|.+.+..
T Consensus 332 ~fr~cp~v~~~ 342 (423)
T KOG4219|consen 332 AFRWCPFVKGT 342 (423)
T ss_pred hhheeeeeccc
Confidence 99988644443
No 2
>PHA03234 DNA packaging protein UL33; Provisional
Probab=99.78 E-value=1.5e-18 Score=138.64 Aligned_cols=79 Identities=13% Similarity=0.176 Sum_probs=65.3
Q ss_pred hhhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcC-----CC----chHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHH
Q psy1649 28 LGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYP-----DI----IPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFA 98 (170)
Q Consensus 28 ~~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~-----~~----~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~ 98 (170)
++++|++||+++++++|++||+||+++.+++.+.. .. .....+.++.+|+++|||+||+||++++++||++
T Consensus 230 ~~~~k~~k~i~~vv~vF~iCWlPy~iv~l~~~~~~~~~~~~c~~~~~~~~~~~v~~~La~~nsclNPiIY~f~~~~FR~~ 309 (338)
T PHA03234 230 KKHKKTLFFIRILILSFLCIQIPNIAILICEIAFLYIANNSCFGLAQREILQIIIRLMPEIHCFSNPLVYAFTGGDFRLR 309 (338)
T ss_pred hhhhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHhhhhhhHHHHHHhhHHHHHH
Confidence 45678999999999999999999999987765421 11 1234567888999999999999999999999999
Q ss_pred HHHHHHhh
Q psy1649 99 FKKIICKC 106 (170)
Q Consensus 99 ~~~~~~~~ 106 (170)
+++.++..
T Consensus 310 ~~~~~~~~ 317 (338)
T PHA03234 310 FTACFQDF 317 (338)
T ss_pred HHHHHHHH
Confidence 99888654
No 3
>PHA03235 DNA packaging protein UL33; Provisional
Probab=99.77 E-value=3.4e-18 Score=139.55 Aligned_cols=82 Identities=15% Similarity=0.257 Sum_probs=67.0
Q ss_pred hhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcC-----C----CchHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHHH
Q psy1649 29 GFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYP-----D----IIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAF 99 (170)
Q Consensus 29 ~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~-----~----~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~ 99 (170)
++.|+++|+++++++|++||+||+++.++..+.. . .....+..++.+|+++|||+||+||++++++||+++
T Consensus 238 ~~~k~~~~v~iivv~F~iCWlPy~v~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~La~~ns~lNPiIY~~~~~~FRk~~ 317 (409)
T PHA03235 238 KRSRTLTFVCILLLSFLCLQTPFVAIMIFDSYATLIWPSDCEHINLRDAVSTLSRLVPNLHCLLNPILYAFLGNDFLKRF 317 (409)
T ss_pred cchhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCchhhhHHHHHHHHHHHHHHHHHhHhHHHHHHhhHHHHHHH
Confidence 4567889999999999999999999988865431 1 122356778899999999999999999999999999
Q ss_pred HHHHHhhhccC
Q psy1649 100 KKIICKCFCAQ 110 (170)
Q Consensus 100 ~~~~~~~~~~~ 110 (170)
++.++++.+.+
T Consensus 318 ~~~l~~~l~~~ 328 (409)
T PHA03235 318 RQCFRGELFSR 328 (409)
T ss_pred HHHHhhhhhhh
Confidence 99987654444
No 4
>KOG4220|consensus
Probab=99.75 E-value=4.5e-19 Score=140.65 Aligned_cols=83 Identities=29% Similarity=0.546 Sum_probs=78.3
Q ss_pred hhhhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHHHHHHHHhh
Q psy1649 27 ALGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIICKC 106 (170)
Q Consensus 27 ~~~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~ 106 (170)
..+|+|++|+|.+|++.|++||+||.|+.++..|.+.+++.+++.+..||.|+||.+||++|++=|..||+.|++++.|.
T Consensus 409 ~~rErKAAkTLsAILlAFIiTWtPYNImVlv~tFC~~CiP~tlW~~gYwLCYINSTiNP~CYALCNatFrkTfk~lL~Cr 488 (503)
T KOG4220|consen 409 LVRERKAAKTLSAILLAFILTWTPYNIMVLVNTFCKNCIPETLWTFGYWLCYINSTINPLCYALCNATFRKTFKRLLLCR 488 (503)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcccceeeeehHhhcccccchhHhhhhhheeeecccccHHHHHHHhHHHHHHHHHhheee
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred hcc
Q psy1649 107 FCA 109 (170)
Q Consensus 107 ~~~ 109 (170)
+..
T Consensus 489 ~~~ 491 (503)
T KOG4220|consen 489 WKK 491 (503)
T ss_pred ecc
Confidence 433
No 5
>PHA02834 chemokine receptor-like protein; Provisional
Probab=99.68 E-value=3.8e-17 Score=129.75 Aligned_cols=78 Identities=18% Similarity=0.455 Sum_probs=63.6
Q ss_pred hhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCCC--------ch--HHHHHHHHHHHHhhhhhhHHHHHHccHHHHHH
Q psy1649 29 GFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDI--------IP--KTIFNVMFWLGYCNSAVNPLIYALFSKDFRFA 98 (170)
Q Consensus 29 ~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~~--------~~--~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~ 98 (170)
.++|++||+++++++|++||+||+++.++..+.+.. .. ..+..++.+++++|||+||+||++++++||++
T Consensus 223 ~~~k~~k~~~~vv~~F~icWlPy~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~iNPiIY~~~~~~fR~~ 302 (323)
T PHA02834 223 NKTRSIKIILTVVTFTVVFWVPFNIVLFINSLQSVGLIDIGCYHFKKIVYSIDIAELISFVHCCVNPIIYAFVGKNFKKV 302 (323)
T ss_pred ccceEEeehhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHhhccccHHHHHHhcHHHHHH
Confidence 456889999999999999999999998877653211 01 12345788899999999999999999999999
Q ss_pred HHHHHHhh
Q psy1649 99 FKKIICKC 106 (170)
Q Consensus 99 ~~~~~~~~ 106 (170)
++++++++
T Consensus 303 ~~~~~~~~ 310 (323)
T PHA02834 303 FKNMFCRT 310 (323)
T ss_pred HHHHHHhh
Confidence 99988643
No 6
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=99.66 E-value=4.3e-16 Score=127.62 Aligned_cols=80 Identities=20% Similarity=0.403 Sum_probs=66.3
Q ss_pred hhhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCC-----------C---chHHHHHHHHHHHHhhhhhhHHHHHHccH
Q psy1649 28 LGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPD-----------I---IPKTIFNVMFWLGYCNSAVNPLIYALFSK 93 (170)
Q Consensus 28 ~~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~-----------~---~~~~~~~~~~~l~~~ns~~NPiiY~~~~~ 93 (170)
+++.|.+|++++++++|++||+||+++.++..+... + ..+.+..++.+++++|||+||+||+++++
T Consensus 306 ~~k~k~~rli~~ivi~f~lcW~Py~i~~ll~~~~~~~~~~~~~~~~~c~~~~l~~~~~vt~~la~~~sclNPiIY~f~~~ 385 (417)
T PHA02638 306 SKKTKSIIIVSIIIICSLICWIPLNIVILFATMYSFKGFNSIISEHICGFIKLGYAMMLAEAISLTHCCINPLIYTLIGE 385 (417)
T ss_pred cccchhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhccccccccccccHHHHHHHHHHHHHHHHHHHhhhHHHHHHhCH
Confidence 346788999999999999999999999988765411 0 11245568889999999999999999999
Q ss_pred HHHHHHHHHHHhhh
Q psy1649 94 DFRFAFKKIICKCF 107 (170)
Q Consensus 94 ~fR~~~~~~~~~~~ 107 (170)
+||+++++++++..
T Consensus 386 ~FR~~l~~~~~~~~ 399 (417)
T PHA02638 386 NFRMHLLMIFRNIF 399 (417)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999886554
No 7
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=99.56 E-value=1.5e-14 Score=115.09 Aligned_cols=81 Identities=21% Similarity=0.221 Sum_probs=65.6
Q ss_pred hhhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhc-----CCC----chHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHH
Q psy1649 28 LGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFY-----PDI----IPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFA 98 (170)
Q Consensus 28 ~~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~-----~~~----~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~ 98 (170)
+++.|++|++++++++|++||+||++..++..+. ... ....+..++.+++++||++||+||++++++||++
T Consensus 237 ~~~~k~~k~l~~iv~~f~i~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~~NPiIY~~~~~~fr~~ 316 (335)
T PHA03087 237 KKNKKAIKLVLIIVILFVIFWLPFNVSVFVYSLHILHFKSGCKAVKYIQYALHVTEIISLSHCCINPLIYAFVSEFFNKH 316 (335)
T ss_pred hhcchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhHHHHcCHHHHHH
Confidence 4567899999999999999999999987766432 111 1234556788899999999999999999999999
Q ss_pred HHHHHHhhhc
Q psy1649 99 FKKIICKCFC 108 (170)
Q Consensus 99 ~~~~~~~~~~ 108 (170)
+++.++....
T Consensus 317 ~~~~~~~~~~ 326 (335)
T PHA03087 317 KKKSLKLMFT 326 (335)
T ss_pred HHHHHHHHhh
Confidence 9999874443
No 8
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=99.28 E-value=2.7e-11 Score=91.04 Aligned_cols=65 Identities=29% Similarity=0.549 Sum_probs=59.1
Q ss_pred hhhhhhhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCCC--chHHHHHHHHHHHHhhhhhhHHHH
Q psy1649 24 SLLALGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDI--IPKTIFNVMFWLGYCNSAVNPLIY 88 (170)
Q Consensus 24 ~~~~~~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~~--~~~~~~~~~~~l~~~ns~~NPiiY 88 (170)
+...++++|+++++++++++|++||+|+.+..++..+.+.. .......++.+++++||++||+||
T Consensus 191 ~~~~~~~~~~~~~~~~i~~~f~~~~~P~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~s~~nP~iY 257 (257)
T PF00001_consen 191 RRRSRRERRAARTLLIIVLVFLLCWLPYFILSLLSVFSPSSSLISSILFYISYFLAFLNSCLNPIIY 257 (257)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTSTCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccCCceeHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhhCcEEC
Confidence 34567789999999999999999999999999999988766 678899999999999999999999
No 9
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=98.83 E-value=1.1e-08 Score=80.99 Aligned_cols=78 Identities=18% Similarity=0.154 Sum_probs=67.4
Q ss_pred hhhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCC-----CchHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHHHHHH
Q psy1649 28 LGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPD-----IIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKI 102 (170)
Q Consensus 28 ~~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~-----~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~ 102 (170)
.++-+.++|++++++.|+++-+|+.+..++..+... .....+..+..+|..+|++.|++||++++.+||++++++
T Consensus 235 ~~~~~tt~li~~~ti~f~i~e~p~gi~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~h~~ic~~mSsqYR~t~~~~ 314 (318)
T PF10324_consen 235 KKSDRTTKLILFMTISFLISELPQGIIFLLESFFEEDSGLIFIIIQLSIIFNILITINSSIHFFICCFMSSQYRKTVKKL 314 (318)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHhhhHHHhhhhhhHHHHHHHHHH
Confidence 356678999999999999999999999999876422 233567788889999999999999999999999999999
Q ss_pred HHh
Q psy1649 103 ICK 105 (170)
Q Consensus 103 ~~~ 105 (170)
+++
T Consensus 315 f~~ 317 (318)
T PF10324_consen 315 FGC 317 (318)
T ss_pred hcc
Confidence 974
No 10
>KOG2087|consensus
Probab=98.75 E-value=3.4e-10 Score=89.27 Aligned_cols=79 Identities=18% Similarity=0.267 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCCCchHHHH-HHHHHHHHhhhhhhHHHHHHccHHHHHHHHHHHHhhhcc
Q psy1649 31 LDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIF-NVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIICKCFCA 109 (170)
Q Consensus 31 ~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~~~~~~~~-~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~~~~ 109 (170)
..++|-++.++.+-++||.|.+++.+...+..+.+..... .+..++.-+|||+||++|+|+++.||+.++.++.+..++
T Consensus 231 ~~~akr~a~LvfTd~icw~Pi~f~~~~al~~~~li~~~~sk~llv~flPlns~~NP~LYa~fT~~fk~d~~~l~~k~~~~ 310 (363)
T KOG2087|consen 231 TSVAKRMAFLVFTDCICWCPIAFFKFSALIGVELISVSYSKWLLVFFLPLNSCLNPFLYAFFTPVFKEDLFLLLSKVGLC 310 (363)
T ss_pred hhhhhCeeEEEEccccccCchheeeeHHhcCCcccChhhceeEEEEEEEcccccCchhHHHcCHHHHHHHHHHHhhcchh
Confidence 3677788999999999999999999998887554443333 233334459999999999999999999999998766433
No 11
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=97.96 E-value=9.2e-06 Score=62.70 Aligned_cols=77 Identities=14% Similarity=0.049 Sum_probs=62.1
Q ss_pred hhhhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCC--CchHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHHHHHHH
Q psy1649 27 ALGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPD--IIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKII 103 (170)
Q Consensus 27 ~~~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~--~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~ 103 (170)
..+++|+.|.+.+++++|++.|.=-.+...+....+. .....+.....+++.++.+.|-+||.+.+++||++++++|
T Consensus 179 ~~~~~kv~ksL~v~v~i~i~~w~~s~~~~~v~~~~~~~~~~~~~i~~~~~i~v~~~~s~~ffV~~~~S~EYR~af~~~~ 257 (257)
T PF10320_consen 179 SSRSKKVFKSLKVTVIIFIFSWFLSQIINTVSLALGLDGETIAIIQMYAGIFVNISYSQNFFVYYWRSSEYRKAFRELF 257 (257)
T ss_pred chhHHHHHHHhhhheeeeeHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHheEEEEcCHHHHHHHHHhC
Confidence 4556889999999999999999977666555443333 2334567778899999999999999999999999999864
No 12
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=97.55 E-value=0.00059 Score=53.42 Aligned_cols=81 Identities=12% Similarity=-0.006 Sum_probs=55.5
Q ss_pred HhhhhhhhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCCCc-hHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHHHHH
Q psy1649 23 ASLLALGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDII-PKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKK 101 (170)
Q Consensus 23 ~~~~~~~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~~~-~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~ 101 (170)
.....++|.+++.+.++.++++++...=| ++..+........ ...+..+..++.-+.|.+||+.--++|+++|+++++
T Consensus 201 ~s~~~~rE~~L~~~~~i~~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~r~~y~~~~~~~s~inP~~LLi~n~~lr~~~~~ 279 (283)
T PF10323_consen 201 SSRSRRREIRLAIQVFILFCAFFVILVYY-IFSNYFAQNFNTDPIFYLRAFYPILNGLLSFINPWMLLIFNKDLRKQVRR 279 (283)
T ss_pred hhhhhhHhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcccchHHHHHHHHHHHHHHHHHhhhhHHhhhccHHHHHHHHH
Confidence 44467788999988877777665554444 4333333332222 222333566677889999999999999999999999
Q ss_pred HHH
Q psy1649 102 IIC 104 (170)
Q Consensus 102 ~~~ 104 (170)
.++
T Consensus 280 ~~~ 282 (283)
T PF10323_consen 280 MLK 282 (283)
T ss_pred HcC
Confidence 876
No 13
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=97.54 E-value=0.00065 Score=42.59 Aligned_cols=65 Identities=14% Similarity=0.080 Sum_probs=51.1
Q ss_pred hhHHHHHHHHHHHHhHhHhhH-hHHHHHHHHhhc-CCCchHHHHHHHHHHHHhhhhhhHHHHHHccH
Q psy1649 29 GFLDVMVVVGNSLSNPIFCWL-PFFSLYLLGGFY-PDIIPKTIFNVMFWLGYCNSAVNPLIYALFSK 93 (170)
Q Consensus 29 ~~~k~~k~l~~vv~~F~icw~-P~~v~~l~~~~~-~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~ 93 (170)
+-.|.++.+++==++|+++|+ |+.+-.+-.... ...+...+..++.++..+|..+|-++|.+.-+
T Consensus 6 ~i~r~lr~mfiYP~~Yi~lwlfP~~~~~~~~~~~~~~~p~~~l~~i~~~~~~~~G~VD~lvf~~~er 72 (76)
T PF11970_consen 6 RIRRQLRSMFIYPLVYIVLWLFPFAAHRMQYMYEIGHGPSFWLFCIAGFMQPSQGFVDCLVFTLRER 72 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHccCHHHhhheeeecc
Confidence 346778999999999999999 987766655432 34455678888888999999999999987654
No 14
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=97.04 E-value=0.0072 Score=47.82 Aligned_cols=74 Identities=18% Similarity=0.049 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHHHHHHHHhh
Q psy1649 30 FLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIICKC 106 (170)
Q Consensus 30 ~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~ 106 (170)
..|++|+++..++.|+++++-..+..+...+. ....+..+...++++.+..+|+|-.+-|++.|+++++++++.
T Consensus 229 H~~a~k~~~sfl~ly~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~yps~hs~iLIlgn~KLr~~~~~il~~~ 302 (303)
T PF05296_consen 229 HIRAIKTMISFLILYIIYFLSLILSFLSFFFP---ENSIWFWVCEIIIALYPSGHSIILILGNPKLRQALLKILWCL 302 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhc
Confidence 35788888888877777665544322222222 224566788889999999999999999999999999998743
No 15
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=96.47 E-value=0.049 Score=43.18 Aligned_cols=71 Identities=11% Similarity=-0.019 Sum_probs=54.2
Q ss_pred HHHHHHhHhHhhHhHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHHHHHHHHhhhcc
Q psy1649 37 VGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIICKCFCA 109 (170)
Q Consensus 37 l~~vv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~~~~ 109 (170)
+..=.++|++||+|-.+-.+...++... ..+..+-..++-+.=.+|.++|.+-++-.++.+...+++.+..
T Consensus 204 L~~Yp~ifiicw~fa~INRI~~~~~~~~--~~l~~Lh~~~s~lqGf~nsivy~~n~~~~~~~~~~~~~~~~~~ 274 (303)
T PF05462_consen 204 LVNYPLIFIICWIFATINRIYNFIGKNP--FWLSVLHVGFSPLQGFFNSIVYGYNNSLMWRYLGSKILCQFTK 274 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcc
Confidence 5568889999999999999999876332 3344444556667778999999999999999988877654433
No 16
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=95.89 E-value=0.038 Score=44.74 Aligned_cols=26 Identities=19% Similarity=0.099 Sum_probs=19.6
Q ss_pred HHHHHHHHHhHhHhhHhHHHHHHHHh
Q psy1649 34 MVVVGNSLSNPIFCWLPFFSLYLLGG 59 (170)
Q Consensus 34 ~k~l~~vv~~F~icw~P~~v~~l~~~ 59 (170)
-+-.+.|+++|++||+|..|--++.+
T Consensus 243 K~kFf~I~lVF~iCWlpNIINg~LL~ 268 (405)
T PF02101_consen 243 KIKFFKIMLVFYICWLPNIINGSLLF 268 (405)
T ss_pred HHHHHHHHHHHHHHhhhhhHhHHHHH
Confidence 34467788999999999988655443
No 17
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=95.86 E-value=0.0078 Score=47.88 Aligned_cols=72 Identities=8% Similarity=0.040 Sum_probs=50.6
Q ss_pred hhhhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHHHHHHHH
Q psy1649 27 ALGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIIC 104 (170)
Q Consensus 27 ~~~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~ 104 (170)
.+.+++++.-.+++.+..++.++=|.....+ ..++.+..+..+.=.+++..+|+||-.+|+..|++++++++
T Consensus 235 ~k~~~qI~iQs~iIC~f~~i~a~iyv~m~f~------~~p~~~i~~~~~~Wql~~g~~~iIYl~lNrtIR~~~~k~~~ 306 (313)
T PF10321_consen 235 SKAQRQIFIQSVIICFFHAIAAVIYVYMQFF------PPPPWLIIIGQISWQLSHGCPPIIYLTLNRTIRNSVLKMLG 306 (313)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHeeeee------cccHHHHHHHHHHHhccCCccceEEEEECHHHHHHHHHHHc
Confidence 3445566666666655555555444332221 23456667777777899999999999999999999999986
No 18
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=95.39 E-value=0.069 Score=41.40 Aligned_cols=76 Identities=12% Similarity=-0.007 Sum_probs=55.3
Q ss_pred HHhhhhhhhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHHHHH
Q psy1649 22 LASLLALGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKK 101 (170)
Q Consensus 22 ~~~~~~~~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~ 101 (170)
+.+++.++|.+.++-.++--++|++.|+=|++..-+. +.. ...+..+.+.-.+.-++|++|+.++|+++|+.+++
T Consensus 197 ~s~~r~rke~~f~~Qs~~Q~~~~~i~~~~~~~~~~~~---~~~--~~~F~~~t~~w~~~h~~DG~i~l~fN~~~r~~~~~ 271 (274)
T PF10328_consen 197 ESKKRRRKEIRFFIQSFIQDLLYLIDLIFYFFIPPLS---SNR--WWQFFCTTFSWVLVHALDGLIMLIFNSEIRRKIRK 271 (274)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccc--HHHHHHHHHHHHHHHHhcceeEeEEcHHHHHHHHh
Confidence 3445677799999999999999999999888765442 222 22222233323466778999999999999999876
Q ss_pred H
Q psy1649 102 I 102 (170)
Q Consensus 102 ~ 102 (170)
.
T Consensus 272 ~ 272 (274)
T PF10328_consen 272 K 272 (274)
T ss_pred c
Confidence 4
No 19
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=95.33 E-value=0.084 Score=41.40 Aligned_cols=74 Identities=19% Similarity=0.274 Sum_probs=59.9
Q ss_pred hhhhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHHHHH
Q psy1649 27 ALGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKK 101 (170)
Q Consensus 27 ~~~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~ 101 (170)
+...+.++|.+.+=.++=+++..|-.+.+++..+.... ......+...++.+-+++||+++-++-+.||++++|
T Consensus 219 k~~h~~lv~~Lt~Q~~lP~~~~~p~~~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~P~itl~fv~PYR~~i~r 292 (292)
T PF10317_consen 219 KSMHRQLVKGLTIQALLPLFFYIPGVIIYFLSQFTGYE-HPFLEYLIFMLASLPPLIDPLITLYFVRPYRKAILR 292 (292)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHhchHhheeeeHhHHHHhcC
Confidence 33456789999999999999999888877776665433 356777777788999999999999999999998864
No 20
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=94.61 E-value=0.11 Score=41.23 Aligned_cols=75 Identities=13% Similarity=0.142 Sum_probs=60.8
Q ss_pred HhhhhhhhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHH
Q psy1649 23 ASLLALGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFA 98 (170)
Q Consensus 23 ~~~~~~~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~ 98 (170)
.+...++.+++++-+++=.++-.+|.+|..++.++-.+.... ...+..++..+..++|.+|-++-.+.++.||+-
T Consensus 228 S~~ty~kHk~av~SLi~Q~~~~~i~~~P~~~~~~~~~~~~~~-~q~i~~~~~~~f~~HS~~n~ivli~t~ppYR~f 302 (303)
T PF10327_consen 228 SKQTYQKHKEAVRSLIAQFATSSICILPPFIFVVVVIFEFED-AQVISEICLAIFSSHSSVNMIVLIITTPPYRKF 302 (303)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecCCC-cHHHHHHHHHHHHHhhHhhheeeeEcCcchhhc
Confidence 345677888899999999999999999998877766554333 345667777888899999999999999999974
No 21
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=93.26 E-value=0.69 Score=36.23 Aligned_cols=78 Identities=10% Similarity=0.108 Sum_probs=54.7
Q ss_pred hhhhhHHHHHHHHHHHHhHhHh-hHhHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHHHHHHHH
Q psy1649 26 LALGFLDVMVVVGNSLSNPIFC-WLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIIC 104 (170)
Q Consensus 26 ~~~~~~k~~k~l~~vv~~F~ic-w~P~~v~~l~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~ 104 (170)
..+-.+|.++.+.+=+++.+++ -.|...+.+...++. ....+..++.++.-.+..+.-++.-+.++.+|+.+.++++
T Consensus 224 T~k~Qkkfl~~l~iQ~~ip~~~l~~P~~~~~~~~~~~~--~~q~~~n~~~~~~~~HG~~sti~mi~~~~pYR~~~~~~~~ 301 (302)
T PF10318_consen 224 TRKMQKKFLIALIIQVLIPFIFLFIPLIYFIISIIFGY--YNQALNNISFIIISLHGIASTIVMILVHKPYRKFLLSLFR 301 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc--cccccchHHHHHHHhccHHHHHHHhhccHHHHHHHHHHhc
Confidence 3444556666666655555444 448877666554432 1234556777788899999999999999999999999987
Q ss_pred h
Q psy1649 105 K 105 (170)
Q Consensus 105 ~ 105 (170)
|
T Consensus 302 ~ 302 (302)
T PF10318_consen 302 C 302 (302)
T ss_pred C
Confidence 3
No 22
>KOG2575|consensus
Probab=89.13 E-value=0.44 Score=39.17 Aligned_cols=25 Identities=20% Similarity=0.526 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHhHhHhhHhHHHH
Q psy1649 30 FLDVMVVVGNSLSNPIFCWLPFFSL 54 (170)
Q Consensus 30 ~~k~~k~l~~vv~~F~icw~P~~v~ 54 (170)
-.++++..++|+++|+|||+|+...
T Consensus 254 f~ri~~ia~~Vv~TF~iiw~P~~~~ 278 (510)
T KOG2575|consen 254 FARIIKIALAVVGTFVIIWLPFLLS 278 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678999999999999999998653
No 23
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=88.62 E-value=0.3 Score=37.96 Aligned_cols=71 Identities=10% Similarity=0.064 Sum_probs=53.7
Q ss_pred hhhhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHHH
Q psy1649 27 ALGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAF 99 (170)
Q Consensus 27 ~~~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~ 99 (170)
.-.|.|+++++++.|.+|++.|.--.++.++....... +.+..+..+++..-+.+-|++--..+++..+.+
T Consensus 193 ~SpE~RAtktILlLVs~FV~fY~l~si~~~~~~~~~~~--~~~~~~~~~ls~cfptisPfvLI~~d~~i~~~~ 263 (265)
T PF03402_consen 193 SSPETRATKTILLLVSTFVSFYGLSSILFIYLTSFKNS--PWLLNISVFLSSCFPTISPFVLISSDKRIIKFL 263 (265)
T ss_pred CChhHHHhCeEeeHHHHHHHHHhHHHHHHHHHHHhcCC--cceeEHHHHHhHHhHhhChHHhhccCchHHHHh
Confidence 34789999999999999999999887776654443332 334456777888889999999888888776543
No 24
>KOG4564|consensus
Probab=87.27 E-value=1.6 Score=36.71 Aligned_cols=71 Identities=10% Similarity=0.211 Sum_probs=47.5
Q ss_pred hHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCCC--chHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHHHHHHHHhhh
Q psy1649 30 FLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDI--IPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIICKCF 107 (170)
Q Consensus 30 ~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~~--~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~~ 107 (170)
-+|++|-.++.|-+|.|-++.+. +.+.. .......+..+|..+.=.+=-+||+|.|++++.++++.+.+..
T Consensus 349 y~K~vKaTLvLIPLfGI~~ilf~-------~~P~~~~~~~v~~~~~~~L~SfQGf~VAvlYCFlN~EVq~elrr~W~r~~ 421 (473)
T KOG4564|consen 349 YRKLVKATLVLIPLFGIHYILFA-------FRPDEDTLREVYLYFELFLGSFQGFFVAVLYCFLNGEVQAELRRKWSRWR 421 (473)
T ss_pred HHHHHHHHHHHHHHcCCeeEEEE-------ecCchHHHHHHHHHHHHHHHhccchheehheeecCHHHHHHHHHHHHhcC
Confidence 46788888888888877644322 11222 1223334444555566677789999999999999999987543
No 25
>PF03125 Sre: C. elegans Sre G protein-coupled chemoreceptor; InterPro: IPR004151 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class e (Sre) from the Sra superfamily []. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=86.84 E-value=13 Score=30.12 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHHHHHHHHhhhc
Q psy1649 66 PKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIICKCFC 108 (170)
Q Consensus 66 ~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~~~ 108 (170)
......+......+++.+=|.+-....+..|+.+++.+....+
T Consensus 282 ~~~~~~~~e~~i~l~~~~i~~~~i~s~~~wrk~f~~~~~~~~~ 324 (365)
T PF03125_consen 282 RTILNHIFENCIFLNPIFICPVIIFSVPSWRKEFKRSFPKIRC 324 (365)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHcCHHHHHHHHHhhhhhhc
Confidence 3455667777888888888888888999999999998875443
No 26
>KOG4193|consensus
Probab=85.11 E-value=9 Score=33.54 Aligned_cols=64 Identities=13% Similarity=0.151 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCCCchHHHHHHHHHHHHhhh---hhhHHHHHHccHHHHHHHHHHHH
Q psy1649 32 DVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNS---AVNPLIYALFSKDFRFAFKKIIC 104 (170)
Q Consensus 32 k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~l~~~ns---~~NPiiY~~~~~~fR~~~~~~~~ 104 (170)
+.++.++..+.++-+.|.=- ++.+..+ ... .++.++.++|+ +.=-|+|+++.+++|++.++.++
T Consensus 514 ~~~~~~l~L~~lLGlTW~fg----i~s~~~~--~~~---v~~YlFti~NalQG~fIFi~~cll~~kvr~~~~k~~~ 580 (610)
T KOG4193|consen 514 SLIRSALALLFLLGLTWIFG----IFSWLPG--TSV---VFAYLFTIFNALQGVFIFIFHCLLRKKVRKEYRKWLC 580 (610)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHhcc--cch---HHHHHHHHHHHhhhhHhhHhhhhhhHHHHHHHHHHhc
Confidence 66788888888888888632 2222111 222 23344455555 35577899999999999999887
No 27
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=84.42 E-value=8.6 Score=29.43 Aligned_cols=70 Identities=11% Similarity=0.029 Sum_probs=39.1
Q ss_pred hhhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCC-CchHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHH
Q psy1649 28 LGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPD-IIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFA 98 (170)
Q Consensus 28 ~~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~-~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~ 98 (170)
+.|+++.++.++..+++++.-+.-.+..+ ..+.+. ...+....+.....=+-+...|++--+++++.|++
T Consensus 204 ~~er~L~~is~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~f~sD~ltl~~P~iLl~fs~~vR~~ 274 (275)
T PF02118_consen 204 SVERNLTIISFIISFVQLLIAIWQIINSF-AFFFDFLPISSFLYYLLPFASDLLTLSQPYILLIFSKNVRRQ 274 (275)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhccccHHHHHHHHHHHHHHHHHHHHHHHHheECHhhhcc
Confidence 34555565555555555544433333111 111122 23344444444445566788899999999999985
No 28
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class j (Srj) from the Str superfamily [, ]. The Srj family is designated as the out-group based on its location in preliminary phylogenetic analyses of the entire superfamily [].
Probab=79.88 E-value=7.3 Score=31.06 Aligned_cols=71 Identities=10% Similarity=-0.136 Sum_probs=50.7
Q ss_pred hhhhHHHHHHHHHHHHh-HhHhhHhHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHH
Q psy1649 27 ALGFLDVMVVVGNSLSN-PIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFA 98 (170)
Q Consensus 27 ~~~~~k~~k~l~~vv~~-F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~ 98 (170)
.+-.+++.|.|++=+++ .++|+.|=.+.+....++ .....+..++..+..-+=+++||+.-.+.=+.||+.
T Consensus 238 ~~lq~qL~~AL~vQT~IPi~vsf~Pc~~~wy~pif~-i~~~~~~n~~~~iAls~FPf~DPlAii~~lP~~R~r 309 (310)
T PF10319_consen 238 KRLQRQLFKALIVQTVIPICVSFSPCVLSWYGPIFG-IDLGRWNNYFSVIALSAFPFLDPLAIILCLPAFRNR 309 (310)
T ss_pred HHHHHHHHHHHHHHHHhHHHHhhccHHHHHhHHHHc-CChhHHHHHHHHHHHHHccccCchHhheecHHhhcc
Confidence 34445667777665444 578889988887666664 444456666666666678999999999999999974
No 29
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=73.44 E-value=9 Score=22.67 Aligned_cols=23 Identities=4% Similarity=0.031 Sum_probs=12.3
Q ss_pred hhhhHHHHHHHHHHHHhHhHhhH
Q psy1649 27 ALGFLDVMVVVGNSLSNPIFCWL 49 (170)
Q Consensus 27 ~~~~~k~~k~l~~vv~~F~icw~ 49 (170)
.++.++.-.+++.++++|++-|+
T Consensus 32 qk~~~~~~~i~~~~~i~~l~v~~ 54 (59)
T PF09889_consen 32 QKRMRKTQYIFFGIFILFLAVWI 54 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555566666666555554
No 30
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=70.91 E-value=4.9 Score=25.71 Aligned_cols=17 Identities=6% Similarity=-0.115 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhHhHhhH
Q psy1649 33 VMVVVGNSLSNPIFCWL 49 (170)
Q Consensus 33 ~~k~l~~vv~~F~icw~ 49 (170)
+.-|.+++|+.+++||+
T Consensus 40 I~~iFil~VilwfvCC~ 56 (94)
T PF05393_consen 40 ICGIFILLVILWFVCCK 56 (94)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555677777777776
No 31
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class r (Str) from the Str superfamily [, ]. Almost a quarter (22.5%) of str and srj family genes and pseudogenes in C. elegans appear to have been newly formed by gene duplications since the species split [].
Probab=67.42 E-value=1.2 Score=34.89 Aligned_cols=68 Identities=25% Similarity=0.341 Sum_probs=47.6
Q ss_pred HHHHHHHHHH-HHhHhHhhHhHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHHHH
Q psy1649 31 LDVMVVVGNS-LSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFK 100 (170)
Q Consensus 31 ~k~~k~l~~v-v~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~ 100 (170)
+++.+.|++= ++=+++.++|..++.+...++-. . .....+...+..+.+++||++--+.-++||++++
T Consensus 239 ~QLf~aLv~Qt~iP~i~~~~P~~~~~~~p~~~i~-~-~~~~~~~~~~~~~yP~iDpl~~i~~ik~yR~~i~ 307 (307)
T PF10326_consen 239 KQLFKALVIQTIIPFIFMYIPVFIVFILPFFGID-L-GFFSNIISILISLYPAIDPLPVIFIIKDYRKAIK 307 (307)
T ss_pred HHHHHHHHHHhhhhheeeecchhheeeeeccCCC-C-CccccHhhhhEEEEeehhhheeeEeeHHHHHhhC
Confidence 3455555544 44566778899988877665422 1 1233455566778999999999999999999874
No 32
>PF04238 DUF420: Protein of unknown function (DUF420); InterPro: IPR007352 This is a predicted membrane protein with four transmembrane helices.
Probab=67.18 E-value=32 Score=23.87 Aligned_cols=70 Identities=10% Similarity=-0.039 Sum_probs=39.2
Q ss_pred hhhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCCCchHHHHHHHHHHHHhhh-hhhHHHHHHccHHHHH
Q psy1649 28 LGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNS-AVNPLIYALFSKDFRF 97 (170)
Q Consensus 28 ~~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~l~~~ns-~~NPiiY~~~~~~fR~ 97 (170)
+.-++.....++..++|++|++=++...-...|.++......+......-.+=+ ..=|++....-..+|+
T Consensus 32 ~~Hr~~Ml~a~~ls~lFlv~Yl~~~~~~g~~~f~g~~~ir~~Y~~iL~~Hi~LA~~~~pL~l~tl~~a~~~ 102 (133)
T PF04238_consen 32 KLHRKLMLTAFVLSALFLVSYLYYHFLGGSTPFGGPGWIRPVYLFILISHIILAIVALPLVLYTLYRALRG 102 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344566777888889999999988876444445444433444443333333222 3345554444444443
No 33
>PHA02849 putative transmembrane protein; Provisional
Probab=65.20 E-value=13 Score=23.28 Aligned_cols=26 Identities=23% Similarity=0.246 Sum_probs=18.8
Q ss_pred HHHHHHHHhHhHhhHhHHHHHHHHhh
Q psy1649 35 VVVGNSLSNPIFCWLPFFSLYLLGGF 60 (170)
Q Consensus 35 k~l~~vv~~F~icw~P~~v~~l~~~~ 60 (170)
..+++.+.+++||.+-|.++.+..+.
T Consensus 16 ~v~vi~v~v~vI~i~~flLlyLvkws 41 (82)
T PHA02849 16 AVTVILVFVLVISFLAFMLLYLIKWS 41 (82)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777788888888887777653
No 34
>PHA02657 hypothetical protein; Provisional
Probab=65.00 E-value=12 Score=23.78 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=19.7
Q ss_pred HHHHHHHHhHhHhhHhHHHHHHHHh
Q psy1649 35 VVVGNSLSNPIFCWLPFFSLYLLGG 59 (170)
Q Consensus 35 k~l~~vv~~F~icw~P~~v~~l~~~ 59 (170)
..+++.+.+|.||.+-|.+..+..+
T Consensus 26 ~imVitvfv~vI~il~flLLYLvkW 50 (95)
T PHA02657 26 SILVFTIFIFVVCILIYLLIYLVDW 50 (95)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888899888888777765
No 35
>COG5058 LAG1 Protein transporter of the TRAM (translocating chain-associating membrane) superfamily, longevity assurance factor [Intracellular trafficking and secretion]
Probab=64.97 E-value=27 Score=28.17 Aligned_cols=66 Identities=17% Similarity=0.240 Sum_probs=51.2
Q ss_pred hhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhc---CCCchHHHHHHHHHHHHhhhhhhHHHHHHccHH
Q psy1649 29 GFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFY---PDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKD 94 (170)
Q Consensus 29 ~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~---~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~ 94 (170)
++....-|++=.+++-++-|+-|+.-+...... ...+.+.+..+...+-|+|+.+-+.|++++---
T Consensus 229 prkD~~elv~HHIVTllLI~lSY~fhftr~GlAI~itmDvSD~~Ls~sK~lnYl~~~l~~~iF~iFv~~ 297 (395)
T COG5058 229 PRKDFKELVFHHIVTLLLIWLSYVFHFTRMGLAIYITMDVSDFFLSLSKTLNYLNSVLATFIFGIFVFI 297 (395)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEEEeccHHHHHHHHHHHHhhchhHHHHHHHHHHH
Confidence 344566677888889999999998877665433 335678899999999999999999888877553
No 36
>PF03155 Alg6_Alg8: ALG6, ALG8 glycosyltransferase family; InterPro: IPR004856 N-linked (asparagine-linked) glycosylation of proteins is mediated by a highly conserved pathway in eukaryotes, in which a lipid (dolichol phosphate)-linked oligosaccharide is assembled at the endoplasmic reticulum membrane prior to the transfer of the oligosaccharide moiety to the target asparagine residues. This oligosaccharide is composed of Glc(3)Man(9)GlcNAc(2). The addition of the three glucose residues is the final series of steps in the synthesis of the oligosaccharide precursor. Alg6 transfers the first glucose residue, and Alg8 transfers the second one []. In the human alg6 gene, a C-T transition, which causes Ala333 to be replaced with Val, has been identified as the cause of a congenital disorder of glycosylation, designated as type Ic OMIM:603147 []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0005789 endoplasmic reticulum membrane
Probab=64.62 E-value=8.6 Score=32.52 Aligned_cols=25 Identities=8% Similarity=0.111 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHhHhHhhHhHHH
Q psy1649 29 GFLDVMVVVGNSLSNPIFCWLPFFS 53 (170)
Q Consensus 29 ~~~k~~k~l~~vv~~F~icw~P~~v 53 (170)
.-.++++.-++|+++|++||+|+..
T Consensus 219 ~~~~~~~lg~~Vi~~f~~~~~PF~~ 243 (469)
T PF03155_consen 219 SIKRLIKLGIVVIATFALSFGPFLY 243 (469)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999999963
No 37
>KOG4219|consensus
Probab=63.96 E-value=83 Score=26.24 Aligned_cols=85 Identities=13% Similarity=0.086 Sum_probs=63.2
Q ss_pred hHHHHhhhhhhhHHHHHHHHHHHHhHhHhhHhHHHHH-----HHHhhcCCCchHHHHHHHHHHHHhhhhhhHHHHHHccH
Q psy1649 19 PKLLASLLALGFLDVMVVVGNSLSNPIFCWLPFFSLY-----LLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSK 93 (170)
Q Consensus 19 ~~~~~~~~~~~~~k~~k~l~~vv~~F~icw~P~~v~~-----l~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~ 93 (170)
++.+..+.+++-.|.+..++++..+--+-+=+|+++. +...-....+.-.+++++..-++.|+.+=-++--=+..
T Consensus 248 ~~~~~~kak~K~vkmliiVV~~FaicWlPyh~y~il~~~~~~i~~~k~i~~vyl~~~WLaMSst~yNPiIY~~lN~Rfr~ 327 (423)
T KOG4219|consen 248 RKHEQLKAKKKVVKMLIIVVVIFAICWLPYHIYFILNATNPEINRKKFIQQVYLAIYWLAMSSTCYNPIIYCFLNKRFRG 327 (423)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccHhhhhhHHHHHH
Confidence 3444455556688999999999999999999998887 23333345555677788888888888766666677777
Q ss_pred HHHHHHHHHH
Q psy1649 94 DFRFAFKKII 103 (170)
Q Consensus 94 ~fR~~~~~~~ 103 (170)
.||+.|+-..
T Consensus 328 gf~~~fr~cp 337 (423)
T KOG4219|consen 328 GFRRAFRWCP 337 (423)
T ss_pred HHhhhhheee
Confidence 9999988875
No 38
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=62.09 E-value=31 Score=20.40 Aligned_cols=28 Identities=11% Similarity=-0.187 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHHHhH-hHhhHhHHHHHHH
Q psy1649 30 FLDVMVVVGNSLSNP-IFCWLPFFSLYLL 57 (170)
Q Consensus 30 ~~k~~k~l~~vv~~F-~icw~P~~v~~l~ 57 (170)
++|...+.+.++++| ++|-+-..+-.++
T Consensus 28 RrRrc~~~v~~v~~~~~~c~~S~~lG~~~ 56 (60)
T PF06072_consen 28 RRRRCRLAVAIVFAVVALCVLSGGLGALV 56 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444444444444 7776665554443
No 39
>KOG2927|consensus
Probab=59.16 E-value=25 Score=28.54 Aligned_cols=62 Identities=13% Similarity=0.117 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCCCc-hHHHHHHHHHHHHhhhhhhHHHHHHcc
Q psy1649 31 LDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDII-PKTIFNVMFWLGYCNSAVNPLIYALFS 92 (170)
Q Consensus 31 ~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~~~-~~~~~~~~~~l~~~ns~~NPiiY~~~~ 92 (170)
...+..+++++++++||-+|.+=..|=...+...+ .--+....++|+++-.++=-|+|.+..
T Consensus 189 ~~~vl~~~fvl~tlaivLFPLWP~~mR~gvyY~sig~~gfl~~IlvLaIvRlILF~I~~il~~ 251 (372)
T KOG2927|consen 189 MWQVLGVLFVLVTLAIVLFPLWPRRMRQGVYYLSIGAGGFLAFILVLAIVRLILFGITWILTG 251 (372)
T ss_pred hHHHHHHHHHHHHHHHHhcccCcHHHhcceeeeecchhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44556667788999999999766555443332322 112333345566666666666676666
No 40
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=58.09 E-value=22 Score=20.97 Aligned_cols=9 Identities=22% Similarity=0.508 Sum_probs=4.4
Q ss_pred hHhHhhHhH
Q psy1649 43 NPIFCWLPF 51 (170)
Q Consensus 43 ~F~icw~P~ 51 (170)
+-+..|+||
T Consensus 54 i~v~vvL~~ 62 (64)
T COG4068 54 ILVMVVLPY 62 (64)
T ss_pred HHHHHhhcc
Confidence 344445555
No 41
>PF14163 SieB: Superinfection exclusion protein B
Probab=57.90 E-value=53 Score=22.98 Aligned_cols=69 Identities=12% Similarity=-0.008 Sum_probs=34.0
Q ss_pred HHHHHHHhHhHhhHhHHHHHHHHhhcCCCchHHHHHHHHHHH-------HhhhhhhHHHHHHccHHHHHHHHHHHH
Q psy1649 36 VVGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLG-------YCNSAVNPLIYALFSKDFRFAFKKIIC 104 (170)
Q Consensus 36 ~l~~vv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~l~-------~~ns~~NPiiY~~~~~~fR~~~~~~~~ 104 (170)
|+.+++++-++-++|-.+...+..-.....+..+..+..+++ .++.+++-+..-+..++.++...+.+.
T Consensus 2 m~~l~i~~~~llf~P~~~~~~l~l~~~~~~y~~~i~~~fl~s~s~li~~~~~~~~~~~~~~~~~k~~~~~~~~~l~ 77 (151)
T PF14163_consen 2 MLWLIIFSGLLLFLPESLLEWLNLDKFEIKYQPWIGLIFLFSVSYLIAQLLSFIYKEAKDRYQRKRKKKKIEKKLN 77 (151)
T ss_pred HHHHHHHHHHHHHCCHHHHHHhCcchHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555666888877665443211111111222222222 233344444555667777777766654
No 42
>PF10854 DUF2649: Protein of unknown function (DUF2649); InterPro: IPR021217 This entry is represented by Spiroplasma phage 1-C74, Orf10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members in this family of proteins are also annotated as Plectrovirus orf 10 transmembrane proteins however currently no function is known.
Probab=56.87 E-value=24 Score=20.89 Aligned_cols=22 Identities=9% Similarity=0.434 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhHhHhhHhHHHH
Q psy1649 33 VMVVVGNSLSNPIFCWLPFFSL 54 (170)
Q Consensus 33 ~~k~l~~vv~~F~icw~P~~v~ 54 (170)
++.|+.+-+++|++.|+-...+
T Consensus 38 lt~MiGiWiVilFLtWf~lwm~ 59 (67)
T PF10854_consen 38 LTIMIGIWIVILFLTWFLLWMV 59 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5678999999999999865543
No 43
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=56.12 E-value=1e+02 Score=24.50 Aligned_cols=78 Identities=14% Similarity=0.042 Sum_probs=50.3
Q ss_pred hhhhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCCCchH-HHHHHHHH--HHHhhhhhhHHHHHHccHHHHHHHHHHH
Q psy1649 27 ALGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDIIPK-TIFNVMFW--LGYCNSAVNPLIYALFSKDFRFAFKKII 103 (170)
Q Consensus 27 ~~~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~~~~~-~~~~~~~~--l~~~ns~~NPiiY~~~~~~fR~~~~~~~ 103 (170)
...+.++++++..++.+..+.-+-|.+..++.......... ....+..+ ..-..+.+=|++.....++.|+..++-+
T Consensus 225 l~ENl~slr~L~p~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~y~al~e~~~~~P~Y~ii~~~~~~~~~k~~r~~~~~~l 304 (324)
T PF10292_consen 225 LEENLRSLRLLKPFIILSSIFIFFYIFASIFLRLFNPSMSKPNYFALAELNHIFPLYSIISPLILYRKIKKIRKKRKKRL 304 (324)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888887777777776665555433332222 11112222 3346788889999999999998887766
Q ss_pred H
Q psy1649 104 C 104 (170)
Q Consensus 104 ~ 104 (170)
.
T Consensus 305 ~ 305 (324)
T PF10292_consen 305 E 305 (324)
T ss_pred H
Confidence 5
No 44
>PHA00646 hypothetical protein
Probab=55.53 E-value=19 Score=21.32 Aligned_cols=21 Identities=19% Similarity=0.472 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhHhHhhHhHHH
Q psy1649 33 VMVVVGNSLSNPIFCWLPFFS 53 (170)
Q Consensus 33 ~~k~l~~vv~~F~icw~P~~v 53 (170)
.+.|+.+-+++|++.|+-...
T Consensus 36 ~~~MVgIWlvI~Fl~Wf~i~m 56 (65)
T PHA00646 36 LTLMVGIWLVILFLTWFSLWM 56 (65)
T ss_pred ehhHHHHHHHHHHHHHHHHHH
Confidence 468999999999999986543
No 45
>PRK13735 conjugal transfer mating pair stabilization protein TraG; Provisional
Probab=55.43 E-value=55 Score=30.37 Aligned_cols=27 Identities=11% Similarity=0.202 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHhHhHhhHhHHHHHHH
Q psy1649 31 LDVMVVVGNSLSNPIFCWLPFFSLYLL 57 (170)
Q Consensus 31 ~k~~k~l~~vv~~F~icw~P~~v~~l~ 57 (170)
.+.+.++-.++.++++|-+|+.++.++
T Consensus 322 ~~~LP~m~svl~~i~yglFPlV~llal 348 (942)
T PRK13735 322 MRTLPMMQTILMGIAIGIFPLLVLAAV 348 (942)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777778888888888888776544
No 46
>COG1687 AzlD Predicted branched-chain amino acid permeases (azaleucine resistance) [Amino acid transport and metabolism]
Probab=55.36 E-value=17 Score=24.13 Aligned_cols=23 Identities=13% Similarity=0.310 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhHhHhhHhHHHHH
Q psy1649 33 VMVVVGNSLSNPIFCWLPFFSLY 55 (170)
Q Consensus 33 ~~k~l~~vv~~F~icw~P~~v~~ 55 (170)
++..+.+++++|+.-|+||.++.
T Consensus 6 ~l~i~v~~v~t~~~RilPF~if~ 28 (106)
T COG1687 6 ILTIIVIAVGTFLTRILPFLIFK 28 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 56678889999999999998853
No 47
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=54.41 E-value=30 Score=26.29 Aligned_cols=61 Identities=10% Similarity=0.213 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCCCch-HHHHHHHHHHHHhhhhhhHHHHHHc
Q psy1649 31 LDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDIIP-KTIFNVMFWLGYCNSAVNPLIYALF 91 (170)
Q Consensus 31 ~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~~~~-~~~~~~~~~l~~~ns~~NPiiY~~~ 91 (170)
...+..++++++++++|.+|.+=..+=...+...+. -.+..+...|+.+-.++--++|.+.
T Consensus 110 ~~~l~~~~~~~~v~a~~lFPlWP~~~r~gv~YlS~~~lgll~~~~~laivRlilf~i~w~~~ 171 (224)
T PF03839_consen 110 MQYLIGALLLVGVIAICLFPLWPRWMRQGVYYLSVGALGLLGLFFALAIVRLILFLITWFFT 171 (224)
T ss_pred HHHHHHHHHHHHHHHHHhhhcChHHHhheeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677888889999999996543332221111110 1123344445566666766777765
No 48
>KOG3827|consensus
Probab=53.28 E-value=5.7 Score=32.47 Aligned_cols=30 Identities=17% Similarity=0.175 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHhHhHhhHhHHHHHHHHhh
Q psy1649 31 LDVMVVVGNSLSNPIFCWLPFFSLYLLGGF 60 (170)
Q Consensus 31 ~k~~k~l~~vv~~F~icw~P~~v~~l~~~~ 60 (170)
.|---|+++-.+.|++.|+=|.+++-+.++
T Consensus 60 ~kWR~~lliF~~sf~~SWl~Fg~iwwlIA~ 89 (400)
T KOG3827|consen 60 LKWRWMLLIFSLSFVLSWLFFGVIWWLIAY 89 (400)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445568888999999999998776655444
No 49
>PF02532 PsbI: Photosystem II reaction centre I protein (PSII 4.8 kDa protein); InterPro: IPR003686 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbI, which is tightly associated with the D1/D2 heterodimer in PSII. The function of PsbI is unknown, but it may be involved in the assembly, dimerisation or stabilisation of PSII dimers [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_i 3ARC_I 3A0B_i 3BZ2_I 3PRQ_I 3KZI_I 3PRR_I 2AXT_i 4FBY_I 1S5L_i ....
Probab=51.78 E-value=35 Score=17.90 Aligned_cols=16 Identities=0% Similarity=-0.085 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhHhHhh
Q psy1649 33 VMVVVGNSLSNPIFCW 48 (170)
Q Consensus 33 ~~k~l~~vv~~F~icw 48 (170)
++|+++.++++|+++-
T Consensus 3 ~LK~~Vy~vV~ffv~L 18 (36)
T PF02532_consen 3 TLKIFVYTVVIFFVSL 18 (36)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred EEEEeehhhHHHHHHH
Confidence 4677788887777763
No 50
>PF13153 DUF3985: Protein of unknown function (DUF3985)
Probab=51.49 E-value=38 Score=18.19 Aligned_cols=27 Identities=15% Similarity=0.233 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhHhHhhHhHHHHHHHHh
Q psy1649 33 VMVVVGNSLSNPIFCWLPFFSLYLLGG 59 (170)
Q Consensus 33 ~~k~l~~vv~~F~icw~P~~v~~l~~~ 59 (170)
++..++++++.|++|=..|..+.++..
T Consensus 3 ila~illvlliyv~~kvayvalkilai 29 (44)
T PF13153_consen 3 ILAIILLVLLIYVFFKVAYVALKILAI 29 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888888887776654
No 51
>TIGR00869 sec62 protein translocation protein, Sec62 family. protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins has been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.
Probab=50.45 E-value=27 Score=26.72 Aligned_cols=64 Identities=11% Similarity=0.150 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCCCch-HHHHHHHHHHHHhhhhhhHHHHHHccH
Q psy1649 30 FLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDIIP-KTIFNVMFWLGYCNSAVNPLIYALFSK 93 (170)
Q Consensus 30 ~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~~~~-~~~~~~~~~l~~~ns~~NPiiY~~~~~ 93 (170)
-...+..++++++++++|.+|.+=..+=...+..++. -.+..+...++.+--++--++|.+...
T Consensus 117 ~~~~l~~~~~~~~ila~~lFPlWP~~~r~gv~YlS~~~lgll~~~~~laivRlilF~i~~~~~g~ 181 (232)
T TIGR00869 117 YMDYLIVILVVSIILALVLFPLWPRFMRRGSWYLSLGALGIIGGFFAVAILRLILFVLTLIVVKP 181 (232)
T ss_pred HHHHHHHHHHHHHHHHHhhcccChHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3456788889999999999986433321111100000 011122345566666666777776553
No 52
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=50.32 E-value=71 Score=21.03 Aligned_cols=59 Identities=12% Similarity=-0.028 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCCCc--hHHHHHHHHHHHHhhhhhhHHH
Q psy1649 29 GFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDII--PKTIFNVMFWLGYCNSAVNPLI 87 (170)
Q Consensus 29 ~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~~~--~~~~~~~~~~l~~~ns~~NPii 87 (170)
.++.+.+.+..+-.+=+-.-+|..+-.++-.+.+..+ .+.+..+..+++.+-.|.|-+.
T Consensus 34 ~~~~~~~~l~~~g~IG~~~v~pil~G~~lG~WLD~~~~t~~~~tl~~lllGv~~G~~n~w~ 94 (100)
T TIGR02230 34 ATRSIWEGLGMFGLIGWSVAIPTLLGVAVGIWLDRHYPSPFSWTLTMLIVGVVIGCLNAWH 94 (100)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666555554455567766666655554322 2356667777888888888744
No 53
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=50.13 E-value=15 Score=23.49 Aligned_cols=17 Identities=18% Similarity=0.262 Sum_probs=12.5
Q ss_pred HHHHHHHHhHhHhhHhH
Q psy1649 35 VVVGNSLSNPIFCWLPF 51 (170)
Q Consensus 35 k~l~~vv~~F~icw~P~ 51 (170)
|.+++.+++|++|++-|
T Consensus 68 K~~~ls~~l~~v~~LvY 84 (85)
T PF15188_consen 68 KSMLLSVALFFVCFLVY 84 (85)
T ss_pred hhHHHHHHHHHHHHHHc
Confidence 56777777788887755
No 54
>COG2322 Predicted membrane protein [Function unknown]
Probab=49.53 E-value=59 Score=23.58 Aligned_cols=63 Identities=16% Similarity=-0.020 Sum_probs=38.2
Q ss_pred hhhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhhh-hHHHHHH
Q psy1649 28 LGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAV-NPLIYAL 90 (170)
Q Consensus 28 ~~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~~~~~~~~~~~~~l~~~ns~~-NPiiY~~ 90 (170)
++.+++..+.....++|+++++-++.+.---.++...+....+.+..+.-.+=+++ =|+.++-
T Consensus 73 ~~Hk~aMltA~~l~l~FlvlYltr~~l~~~t~f~~~G~~k~~Y~~iL~~Hi~LA~i~vPLal~a 136 (177)
T COG2322 73 EKHKRAMLTAFTLALVFLVLYLTRHGLGGETAFGGTGIYKGIYFFILITHIILAAINVPLALYA 136 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCeeeehHHHHHHHHHHHHHHHhhhHHHHH
Confidence 34456777778888999999998887655444444444455555554444433333 3555553
No 55
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=49.48 E-value=30 Score=21.74 Aligned_cols=19 Identities=11% Similarity=0.184 Sum_probs=12.3
Q ss_pred HhHhHhhHhHHHHHHHHhh
Q psy1649 42 SNPIFCWLPFFSLYLLGGF 60 (170)
Q Consensus 42 ~~F~icw~P~~v~~l~~~~ 60 (170)
+..++|++|+-++.++...
T Consensus 24 ~s~l~Cc~PlGi~Ai~~s~ 42 (82)
T PF04505_consen 24 FSTLCCCWPLGIVAIVYSS 42 (82)
T ss_pred HHHHHHHhhHHHHHheech
Confidence 3334666698888777654
No 56
>TIGR00934 2a38euk potassium uptake protein, Trk family. The proteins of the Trk family are derived from Gram-negative and Gram-positive bacteria, yeast and wheat. The proteins of E. coli K12 TrkH and TrkG as well as several yeast proteins have been functionally characterized.The E. coli TrkH and TrkG proteins are complexed to two peripheral membrane proteins, TrkA, an NAD-binding protein, and TrkE, an ATP-binding protein. This complex forms the potassium uptake system. This family is specific for the eukaryotic Trk system.
Probab=45.90 E-value=84 Score=28.59 Aligned_cols=32 Identities=6% Similarity=-0.164 Sum_probs=24.6
Q ss_pred hhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhh
Q psy1649 29 GFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGF 60 (170)
Q Consensus 29 ~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~ 60 (170)
-|-|++|+|+.||+.|++-|-=.-++.++.+.
T Consensus 443 iEYRaLk~L~~Iv~~Y~~~~~llG~i~l~~wi 474 (800)
T TIGR00934 443 IEYRALKCLCSIVLVYFLGFNILGFVLLLPWI 474 (800)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999988766555555443
No 57
>COG1823 Predicted Na+/dicarboxylate symporter [General function prediction only]
Probab=43.93 E-value=1.6e+02 Score=24.45 Aligned_cols=33 Identities=15% Similarity=0.169 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhc
Q psy1649 29 GFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFY 61 (170)
Q Consensus 29 ~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~ 61 (170)
+-...+--++.=++.+++-.+||-++.+.....
T Consensus 217 ~~I~t~~~ivM~lV~~VirLTPYgV~AlMtkv~ 249 (458)
T COG1823 217 AAIDTLQSIVMKLVRLVIRLTPYGVLALMTKVV 249 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 334555666677788899999999998776543
No 58
>PF00375 SDF: Sodium:dicarboxylate symporter family; InterPro: IPR001991 It has been shown [] that integral membrane proteins that mediate the uptake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. One of these families [] is known as the sodium:dicarboxylate symporter family (SDF). Such re-uptake of neurotransmitters from the synapses, is thought to be an important mechanism for terminating their action, by removing these chemicals from the synaptic cleft, and transporting them into presynaptic nerve terminals, and surrounding neuroglia. this removal is also believed to prevent them accumulating to the point of reaching neurotoxic [, ]. The structure of these transporter proteins has been variously reported to contain from 8 to 10 transmembrane (TM) regions, although 10 now seems to be the accepted value. Members of the family include: several mammalian excitatory amino acid transporters, and a number of bacterial transporters. They vary with regars to their dependence on transport of sodium, and other ions.; GO: 0017153 sodium:dicarboxylate symporter activity, 0006835 dicarboxylic acid transport, 0016020 membrane; PDB: 3V8G_B 1XFH_A 3KBC_B 2NWX_B 3V8F_B 2NWL_B 2NWW_A.
Probab=43.07 E-value=1.3e+02 Score=24.69 Aligned_cols=74 Identities=18% Similarity=0.038 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCCCchH-----HHHHHHHHH--HHhhhhhhHHHHH-HccHHHHHHHHHH
Q psy1649 31 LDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDIIPK-----TIFNVMFWL--GYCNSAVNPLIYA-LFSKDFRFAFKKI 102 (170)
Q Consensus 31 ~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~~~~~-----~~~~~~~~l--~~~ns~~NPiiY~-~~~~~fR~~~~~~ 102 (170)
...+.-++.-++-++++++|+.++.+........-.. ..+.++.++ ...-..+.|++|. +...+..+-++.+
T Consensus 166 ~~~~~~~~~~ii~~i~~~~Pigv~~l~a~~~~~~~~~~l~~l~~~v~~~~~~~~i~~~v~~pl~~~~~~~~np~~~~~~~ 245 (390)
T PF00375_consen 166 FESLNEVIMKIINWIMKLAPIGVFGLIANSIATQGLSILGALGKFVLTVYVALLIHLFVVLPLILFVLTRKNPFKFLKAM 245 (390)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHSSCCGHHHHHHHHHHHHHHHHHHHHHHTHHHHHH-TTT--HHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCCHHHHHHHH
Confidence 3445567777888999999999998877654221111 111111111 2223568899999 5454666767666
Q ss_pred HH
Q psy1649 103 IC 104 (170)
Q Consensus 103 ~~ 104 (170)
+.
T Consensus 246 ~~ 247 (390)
T PF00375_consen 246 LP 247 (390)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 59
>PF06210 DUF1003: Protein of unknown function (DUF1003); InterPro: IPR010406 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=42.50 E-value=76 Score=21.15 Aligned_cols=57 Identities=12% Similarity=0.021 Sum_probs=36.4
Q ss_pred HHHHHHHhHhHhhHhHHHHHHHH-hhcCCCchHHHHHHHHHHHHhhhhhhHHHHHHccHHHH
Q psy1649 36 VVGNSLSNPIFCWLPFFSLYLLG-GFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFR 96 (170)
Q Consensus 36 ~l~~vv~~F~icw~P~~v~~l~~-~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR 96 (170)
..+++.++|++.|+=..++.+.. .| .++ .+..+..++++.....=|+|-.--|++=+
T Consensus 5 ~Fi~~~~~~~~~Wi~~N~~~~~~~~f---Dpy-PFilLnl~lS~~Aa~~ap~IlmsQNRq~~ 62 (108)
T PF06210_consen 5 TFIIIFTVFLAVWILLNILAPPRPAF---DPY-PFILLNLVLSLEAAYQAPLILMSQNRQAA 62 (108)
T ss_pred HHHHHHHHHHHHHHHHHhhccccCCC---CCc-cHHHHHHHHHHHHHHHHHHHHHHhhHhHH
Confidence 35667778888888766655543 12 222 24446677778888888998776666443
No 60
>TIGR01912 TatC-Arch Twin arginine targeting (Tat) protein translocase TatC, Archaeal clade. This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR00945) represents the bacterial clade of this family. TatC is often found (in bacteria) in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).
Probab=41.44 E-value=60 Score=24.78 Aligned_cols=30 Identities=17% Similarity=0.435 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHhHhHhhHhHHHHHHHH
Q psy1649 29 GFLDVMVVVGNSLSNPIFCWLPFFSLYLLG 58 (170)
Q Consensus 29 ~~~k~~k~l~~vv~~F~icw~P~~v~~l~~ 58 (170)
-+.|+.+.++.+++.+++||.|+..-.+++
T Consensus 9 LR~Rli~~~i~~~~~~~~~~~~~~~~~i~~ 38 (237)
T TIGR01912 9 FRLILLLVALAIVTGSVLGWLTIFTPFIIA 38 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999999999996665444433
No 61
>PF10601 zf-LITAF-like: LITAF-like zinc ribbon domain; InterPro: IPR006629 Members of this family display a conserved zinc ribbon structure [] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS). The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [].
Probab=40.98 E-value=32 Score=20.86 Aligned_cols=10 Identities=30% Similarity=0.660 Sum_probs=6.1
Q ss_pred hHhhHhHHHH
Q psy1649 45 IFCWLPFFSL 54 (170)
Q Consensus 45 ~icw~P~~v~ 54 (170)
.+||+||..-
T Consensus 43 ~~~~iP~~~~ 52 (73)
T PF10601_consen 43 PCCCIPFCCD 52 (73)
T ss_pred HHhhHhhccc
Confidence 3577777553
No 62
>KOG1726|consensus
Probab=40.26 E-value=73 Score=24.28 Aligned_cols=18 Identities=33% Similarity=0.879 Sum_probs=11.8
Q ss_pred HHHHHHHhHhHhhHhHHH
Q psy1649 36 VVGNSLSNPIFCWLPFFS 53 (170)
Q Consensus 36 ~l~~vv~~F~icw~P~~v 53 (170)
+++=.+.-|+++|+|++-
T Consensus 46 t~~e~~~d~~lsw~P~Y~ 63 (225)
T KOG1726|consen 46 TVFETLTDFLLSWFPFYS 63 (225)
T ss_pred HHHHHHHHHHHHHhhhHH
Confidence 344455667889999643
No 63
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=38.61 E-value=63 Score=17.07 Aligned_cols=22 Identities=5% Similarity=-0.286 Sum_probs=13.3
Q ss_pred hhhhhhHHHHHHHHHHHHhHhH
Q psy1649 25 LLALGFLDVMVVVGNSLSNPIF 46 (170)
Q Consensus 25 ~~~~~~~k~~k~l~~vv~~F~i 46 (170)
...+-|++-+..-++++++|++
T Consensus 8 ai~aYEr~Wi~F~l~mi~vFi~ 29 (38)
T PF09125_consen 8 AIEAYERGWIAFALAMILVFIA 29 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHH
Confidence 3445566666666666666654
No 64
>PF12609 DUF3774: Wound-induced protein; InterPro: IPR022251 This family of proteins is found in eukaryotes. Proteins in this family are typically between 81 and 97 amino acids in length. The proteins in the family are often annotated as wound-induced proteins however there is little accompanying literature to confirm this.
Probab=38.53 E-value=4.7 Score=25.37 Aligned_cols=9 Identities=33% Similarity=0.837 Sum_probs=7.3
Q ss_pred HhHhHhhHh
Q psy1649 42 SNPIFCWLP 50 (170)
Q Consensus 42 ~~F~icw~P 50 (170)
+.|+-||+|
T Consensus 71 VMyLSCWGP 79 (79)
T PF12609_consen 71 VMYLSCWGP 79 (79)
T ss_pred eEEEeccCc
Confidence 568889988
No 65
>COG1983 PspC Putative stress-responsive transcriptional regulator [Transcription / Signal transduction mechanisms]
Probab=38.27 E-value=76 Score=19.46 Aligned_cols=32 Identities=6% Similarity=-0.278 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhc
Q psy1649 30 FLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFY 61 (170)
Q Consensus 30 ~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~ 61 (170)
+..+++.+.+++++|...|.+-.+.+++.++.
T Consensus 28 d~tlVRll~vl~~~~~~~~~~~ii~Yiia~~i 59 (70)
T COG1983 28 DPTLVRLLFVLLTLFGGLTGFGIIAYIIAALI 59 (70)
T ss_pred ChHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 34567777776666665677777766666554
No 66
>PHA03235 DNA packaging protein UL33; Provisional
Probab=38.09 E-value=2.3e+02 Score=23.42 Aligned_cols=36 Identities=19% Similarity=0.087 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHccHHHHHHHHHHH
Q psy1649 68 TIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKII 103 (170)
Q Consensus 68 ~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~ 103 (170)
....++.+=+.+|+++=-++.--+.+.|++.++..+
T Consensus 290 i~~~La~~ns~lNPiIY~~~~~~FRk~~~~~l~~~l 325 (409)
T PHA03235 290 LSRLVPNLHCLLNPILYAFLGNDFLKRFRQCFRGEL 325 (409)
T ss_pred HHHHHHHHHHhHhHHHHHHhhHHHHHHHHHHHhhhh
Confidence 344455566778888888888888888888886643
No 67
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=37.83 E-value=1.1e+02 Score=22.65 Aligned_cols=14 Identities=21% Similarity=0.603 Sum_probs=8.1
Q ss_pred hhhhhhHHHHHHcc
Q psy1649 79 CNSAVNPLIYALFS 92 (170)
Q Consensus 79 ~ns~~NPiiY~~~~ 92 (170)
+|..++|++|.+..
T Consensus 174 inp~l~~~~~iiig 187 (206)
T PF06570_consen 174 INPVLPPWVYIIIG 187 (206)
T ss_pred CCcCCCHHHHHHHH
Confidence 45566666665543
No 68
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=37.46 E-value=71 Score=18.86 Aligned_cols=28 Identities=11% Similarity=-0.135 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHhHhHhhHhHHHHHHH
Q psy1649 30 FLDVMVVVGNSLSNPIFCWLPFFSLYLL 57 (170)
Q Consensus 30 ~~k~~k~l~~vv~~F~icw~P~~v~~l~ 57 (170)
..+.++.+++|-.++++--+-|..+.-|
T Consensus 6 ~~~mtriVLLISfiIlfgRl~Y~~I~a~ 33 (59)
T PF11119_consen 6 NSRMTRIVLLISFIILFGRLIYSAIGAW 33 (59)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 3445555555544444443444444443
No 69
>COG3821 Predicted membrane protein [Function unknown]
Probab=36.17 E-value=27 Score=26.15 Aligned_cols=17 Identities=24% Similarity=0.532 Sum_probs=12.7
Q ss_pred HHHHHhHhHhhHhHHHH
Q psy1649 38 GNSLSNPIFCWLPFFSL 54 (170)
Q Consensus 38 ~~vv~~F~icw~P~~v~ 54 (170)
.+.+.+|++||+-|.-.
T Consensus 7 ~lA~~~F~~~W~~yt~~ 23 (234)
T COG3821 7 LLALAVFLLCWLLYTPA 23 (234)
T ss_pred HHHHHHHHHHHHhhhHH
Confidence 45677899999987543
No 70
>KOG4686|consensus
Probab=35.98 E-value=69 Score=26.02 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=18.1
Q ss_pred HHHHHHHHHhHhHhhHhHHHH
Q psy1649 34 MVVVGNSLSNPIFCWLPFFSL 54 (170)
Q Consensus 34 ~k~l~~vv~~F~icw~P~~v~ 54 (170)
.-++++|.++|.+.|.|+..+
T Consensus 266 fw~~~iicv~yyva~fPFi~l 286 (459)
T KOG4686|consen 266 FWVLVIICVLYYVAWFPFITL 286 (459)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 568899999999999998654
No 71
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=35.45 E-value=50 Score=25.36 Aligned_cols=26 Identities=19% Similarity=0.216 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHhHhHhhHhHHHHH
Q psy1649 30 FLDVMVVVGNSLSNPIFCWLPFFSLY 55 (170)
Q Consensus 30 ~~k~~k~l~~vv~~F~icw~P~~v~~ 55 (170)
-+..+..++..+++|++-.+|+.++.
T Consensus 225 ~~~~~~~~~~~lv~~l~~l~p~~~~~ 250 (262)
T PF14257_consen 225 GWNALVSFLSGLVVFLVGLLPWLPLI 250 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555444444444444444433
No 72
>smart00714 LITAF Possible membrane-associated motif in LPS-induced tumor necrosis factor alpha factor (LITAF), also known as PIG7, and other animal proteins.
Probab=35.38 E-value=49 Score=19.69 Aligned_cols=12 Identities=25% Similarity=0.237 Sum_probs=7.1
Q ss_pred hHhHhhHhHHHH
Q psy1649 43 NPIFCWLPFFSL 54 (170)
Q Consensus 43 ~F~icw~P~~v~ 54 (170)
.+..||+||.+-
T Consensus 35 ~~~~~~iP~~~~ 46 (67)
T smart00714 35 LCFCCCLPCCLD 46 (67)
T ss_pred HHHHHHHHHhcc
Confidence 345677777543
No 73
>KOG1341|consensus
Probab=35.28 E-value=1.3e+02 Score=26.87 Aligned_cols=32 Identities=13% Similarity=-0.115 Sum_probs=24.2
Q ss_pred hhhHHHHHHHHHHHHhHhHhhHhHHHHHHHHh
Q psy1649 28 LGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGG 59 (170)
Q Consensus 28 ~~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~ 59 (170)
.-|-+++|.+..|+++|++-|-=...+.++-+
T Consensus 454 gIEyRAlk~Lcsil~vY~l~~nIvafV~llv~ 485 (854)
T KOG1341|consen 454 GIEYRALKCLCSILVVYFLGWNIVAFVTLLVF 485 (854)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999976555544433
No 74
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=34.89 E-value=69 Score=20.32 Aligned_cols=23 Identities=9% Similarity=0.137 Sum_probs=15.0
Q ss_pred HHHHHHHHhHhHhhHhHHHHHHH
Q psy1649 35 VVVGNSLSNPIFCWLPFFSLYLL 57 (170)
Q Consensus 35 k~l~~vv~~F~icw~P~~v~~l~ 57 (170)
-.++++|++-++|++=|.++.=.
T Consensus 5 Da~~~~V~V~IVclliya~YRR~ 27 (92)
T PHA02681 5 DALLTVIVISIVCYIVIMMYRRS 27 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555777778888777665443
No 75
>PF11014 DUF2852: Protein of unknown function (DUF2852); InterPro: IPR021273 This bacterial family of proteins has no known function.
Probab=33.16 E-value=73 Score=21.56 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=11.6
Q ss_pred HHHHHHHhHhHhhHhHHHHHH
Q psy1649 36 VVGNSLSNPIFCWLPFFSLYL 56 (170)
Q Consensus 36 ~l~~vv~~F~icw~P~~v~~l 56 (170)
.++++|+-|++.| |.-+..+
T Consensus 11 ~Ia~mVlGFi~fW-PlGla~L 30 (115)
T PF11014_consen 11 WIAAMVLGFIVFW-PLGLALL 30 (115)
T ss_pred HHHHHHHHHHHHH-HHHHHHH
Confidence 3666777777754 5544333
No 76
>PF10445 DUF2456: Protein of unknown function (DUF2456); InterPro: IPR018852 This entry represents a family of uncharacterised proteins.
Probab=31.84 E-value=87 Score=20.40 Aligned_cols=24 Identities=4% Similarity=-0.039 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHhHhHhhHhHHH
Q psy1649 30 FLDVMVVVGNSLSNPIFCWLPFFS 53 (170)
Q Consensus 30 ~~k~~k~l~~vv~~F~icw~P~~v 53 (170)
-.++++-++.-++.|++.|-|..-
T Consensus 26 v~~~~rgli~av~~f~~~WP~tig 49 (94)
T PF10445_consen 26 VQQAIRGLILAVLIFLLLWPITIG 49 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHH
Confidence 467889999999999999988765
No 77
>PF13071 DUF3935: Protein of unknown function (DUF3935)
Probab=31.72 E-value=1.2e+02 Score=18.12 Aligned_cols=28 Identities=7% Similarity=0.319 Sum_probs=20.3
Q ss_pred HHHHHHHHHhHhHhhHhHHHHHHHHhhc
Q psy1649 34 MVVVGNSLSNPIFCWLPFFSLYLLGGFY 61 (170)
Q Consensus 34 ~k~l~~vv~~F~icw~P~~v~~l~~~~~ 61 (170)
+|-+.=|++.|++.|+-..-+.+...+.
T Consensus 4 lKqi~Gi~IsfFVFwfsmLGVqmfaeFl 31 (68)
T PF13071_consen 4 LKQIFGIIISFFVFWFSMLGVQMFAEFL 31 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4567778899999999876666655544
No 78
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=30.99 E-value=16 Score=28.86 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHccHH
Q psy1649 68 TIFNVMFWLGYCNSAVNPLIYALFSKD 94 (170)
Q Consensus 68 ~~~~~~~~l~~~ns~~NPiiY~~~~~~ 94 (170)
+|..++++||++=.++==||-+++...
T Consensus 136 ~WtiLaFcLAF~LaivlLIIAv~L~qa 162 (381)
T PF05297_consen 136 FWTILAFCLAFLLAIVLLIIAVLLHQA 162 (381)
T ss_dssp ---------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455554444444444444433
No 79
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=29.07 E-value=1e+02 Score=25.49 Aligned_cols=15 Identities=0% Similarity=-0.230 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHhHhH
Q psy1649 32 DVMVVVGNSLSNPIF 46 (170)
Q Consensus 32 k~~k~l~~vv~~F~i 46 (170)
-..+...+++++|++
T Consensus 298 ~~~r~~~c~~~~i~~ 312 (387)
T PF12751_consen 298 WFSRFASCIYLSILL 312 (387)
T ss_pred HHhhhhHHHHHHHHH
Confidence 344444444444433
No 80
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=27.98 E-value=1.2e+02 Score=23.31 Aligned_cols=31 Identities=16% Similarity=0.052 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHhHhHhhHhHHHHHHHHhh
Q psy1649 30 FLDVMVVVGNSLSNPIFCWLPFFSLYLLGGF 60 (170)
Q Consensus 30 ~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~ 60 (170)
....+...+++++++++-|+|+.++.++.++
T Consensus 228 ~~~~~~~~lv~~l~~l~p~~~~~~~~~~~~~ 258 (262)
T PF14257_consen 228 ALVSFLSGLVVFLVGLLPWLPLILIIGLLVR 258 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555666667788888888777766554
No 81
>COG5346 Predicted membrane protein [Function unknown]
Probab=27.93 E-value=2.1e+02 Score=19.71 Aligned_cols=21 Identities=5% Similarity=-0.493 Sum_probs=11.7
Q ss_pred hhhHHHHHHHHHHHHhHhHhh
Q psy1649 28 LGFLDVMVVVGNSLSNPIFCW 48 (170)
Q Consensus 28 ~~~~k~~k~l~~vv~~F~icw 48 (170)
+++.+..+.-.+.+++|.+|-
T Consensus 81 ~r~~~~~~~tril~liFgi~L 101 (136)
T COG5346 81 RRGQLYAKLTRILLLIFGIFL 101 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555566666666654
No 82
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=27.62 E-value=1.4e+02 Score=24.16 Aligned_cols=48 Identities=17% Similarity=0.314 Sum_probs=29.5
Q ss_pred hhHhHHHHHHHHhhcCCCc--hHHHHHHHHH------------HHHhhhhhhHHHHHHccHH
Q psy1649 47 CWLPFFSLYLLGGFYPDII--PKTIFNVMFW------------LGYCNSAVNPLIYALFSKD 94 (170)
Q Consensus 47 cw~P~~v~~l~~~~~~~~~--~~~~~~~~~~------------l~~~ns~~NPiiY~~~~~~ 94 (170)
--+||++.++......... ...+..++.+ --|++.++.++|+++..++
T Consensus 210 ~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~Ylh~Lip~vltclv~~~ 271 (343)
T cd08050 210 QLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEPYLHQLIPSVLTCLVAKQ 271 (343)
T ss_pred hhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHHhHHHHHHHHHHHhhhHh
Confidence 4579999888777542221 1222222211 2378889999999997775
No 83
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=27.24 E-value=1.2e+02 Score=22.82 Aligned_cols=20 Identities=10% Similarity=0.122 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHhHhHhhHh
Q psy1649 31 LDVMVVVGNSLSNPIFCWLP 50 (170)
Q Consensus 31 ~k~~k~l~~vv~~F~icw~P 50 (170)
.-++.-+++|.++|+||=+=
T Consensus 128 ~amLIClIIIAVLfLICT~L 147 (227)
T PF05399_consen 128 MAMLICLIIIAVLFLICTLL 147 (227)
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 34555566666777777543
No 84
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=26.87 E-value=1.3e+02 Score=16.88 Aligned_cols=21 Identities=14% Similarity=0.180 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHhHhHhhHhHH
Q psy1649 32 DVMVVVGNSLSNPIFCWLPFF 52 (170)
Q Consensus 32 k~~k~l~~vv~~F~icw~P~~ 52 (170)
-++-++++++++.+....|+.
T Consensus 18 a~~gl~il~~~vl~ai~~p~~ 38 (56)
T PF12911_consen 18 AVIGLIILLILVLLAIFAPFI 38 (56)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 333333333333333344443
No 85
>PHA03234 DNA packaging protein UL33; Provisional
Probab=26.86 E-value=3.3e+02 Score=21.75 Aligned_cols=43 Identities=16% Similarity=0.138 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHccHHHHHHHHHHHHhhhccC
Q psy1649 68 TIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIICKCFCAQ 110 (170)
Q Consensus 68 ~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~~~~~ 110 (170)
....++.+=+.+|+++=.++.-=+.+.|++.+++.++++.|..
T Consensus 283 v~~~La~~nsclNPiIY~f~~~~FR~~~~~~~~~~~~~~~~~~ 325 (338)
T PHA03234 283 IIRLMPEIHCFSNPLVYAFTGGDFRLRFTACFQDFFKCNLCNS 325 (338)
T ss_pred HHHHHHHhhhhhhHHHHHHhhHHHHHHHHHHHHHHhhhhhccc
Confidence 3444555567788888888888889999999999887665543
No 86
>PF03317 ELF: ELF protein; InterPro: IPR004990 This is a family of hypothetical proteins from cereal crops.
Probab=26.86 E-value=95 Score=23.27 Aligned_cols=10 Identities=20% Similarity=0.809 Sum_probs=4.6
Q ss_pred hhHhHHHHHH
Q psy1649 47 CWLPFFSLYL 56 (170)
Q Consensus 47 cw~P~~v~~l 56 (170)
..+||.++++
T Consensus 56 ~cipyliffl 65 (284)
T PF03317_consen 56 LCIPYLIFFL 65 (284)
T ss_pred HHHHHHHHHH
Confidence 3355554443
No 87
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=26.80 E-value=1.3e+02 Score=19.19 Aligned_cols=18 Identities=11% Similarity=-0.007 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHhHhHhhHh
Q psy1649 32 DVMVVVGNSLSNPIFCWLP 50 (170)
Q Consensus 32 k~~k~l~~vv~~F~icw~P 50 (170)
..++++++.+++ ++.-+|
T Consensus 12 ~~l~~~~isi~~-~lvi~~ 29 (96)
T PF13800_consen 12 SRLRTVVISIIS-ALVIFI 29 (96)
T ss_pred HHHHHHHHHHhh-hhhhHH
Confidence 344444444444 333334
No 88
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=26.73 E-value=1.9e+02 Score=26.05 Aligned_cols=17 Identities=18% Similarity=0.477 Sum_probs=9.4
Q ss_pred HHHHHHhHhHhhH--hHHH
Q psy1649 37 VGNSLSNPIFCWL--PFFS 53 (170)
Q Consensus 37 l~~vv~~F~icw~--P~~v 53 (170)
+++++..-+|||+ |.+.
T Consensus 80 ~~~~~~~d~~~~~~~p~~~ 98 (697)
T PF09726_consen 80 VCIAFTSDLICLFFIPVHW 98 (697)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344445577876 5543
No 89
>CHL00024 psbI photosystem II protein I
Probab=26.37 E-value=9.4 Score=20.02 Aligned_cols=13 Identities=0% Similarity=-0.192 Sum_probs=7.3
Q ss_pred HHHHHHHHhHhHh
Q psy1649 35 VVVGNSLSNPIFC 47 (170)
Q Consensus 35 k~l~~vv~~F~ic 47 (170)
|.++.++++|+++
T Consensus 5 Ki~Vy~vV~ffvs 17 (36)
T CHL00024 5 KLFVYTVVIFFVS 17 (36)
T ss_pred EeeehhHHHHHHH
Confidence 4455556666554
No 90
>PLN00165 hypothetical protein; Provisional
Probab=26.01 E-value=11 Score=24.20 Aligned_cols=9 Identities=33% Similarity=0.837 Sum_probs=7.4
Q ss_pred HhHhHhhHh
Q psy1649 42 SNPIFCWLP 50 (170)
Q Consensus 42 ~~F~icw~P 50 (170)
+.|+-||+|
T Consensus 79 VMyLSCWGP 87 (88)
T PLN00165 79 VMYLSCWGP 87 (88)
T ss_pred eeEecccCC
Confidence 467899998
No 91
>PRK09731 putative general secretion pathway protein YghD; Provisional
Probab=25.70 E-value=1.2e+02 Score=22.27 Aligned_cols=27 Identities=11% Similarity=0.178 Sum_probs=15.8
Q ss_pred hhhhHHHHHH---HHHHHHhHhHhhHhHHH
Q psy1649 27 ALGFLDVMVV---VGNSLSNPIFCWLPFFS 53 (170)
Q Consensus 27 ~~~~~k~~k~---l~~vv~~F~icw~P~~v 53 (170)
..+|++++.. +++++++|.+.|.|..-
T Consensus 33 s~REq~ll~~~g~vL~l~i~Y~~iWqPl~~ 62 (178)
T PRK09731 33 SPREKGMLLAAVVFLFSVGYYVLIWQPLSE 62 (178)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3455555544 44555666677777655
No 92
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=24.85 E-value=1.3e+02 Score=22.86 Aligned_cols=12 Identities=8% Similarity=0.069 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHh
Q psy1649 32 DVMVVVGNSLSN 43 (170)
Q Consensus 32 k~~k~l~~vv~~ 43 (170)
-++..+++++++
T Consensus 17 NiaI~IV~lLIi 28 (217)
T PF07423_consen 17 NIAIGIVSLLII 28 (217)
T ss_pred HHHHHHHHHHHH
Confidence 344444444333
No 93
>PF15086 UPF0542: Uncharacterised protein family UPF0542
Probab=24.69 E-value=1.1e+02 Score=18.89 Aligned_cols=12 Identities=17% Similarity=0.434 Sum_probs=5.5
Q ss_pred HhHhhHhHHHHH
Q psy1649 44 PIFCWLPFFSLY 55 (170)
Q Consensus 44 F~icw~P~~v~~ 55 (170)
+++|-+|++++.
T Consensus 26 vll~LtPlfiis 37 (74)
T PF15086_consen 26 VLLILTPLFIIS 37 (74)
T ss_pred HHHHHhHHHHHH
Confidence 344444554443
No 94
>PF11298 DUF3099: Protein of unknown function (DUF3099); InterPro: IPR021449 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=24.21 E-value=1.8e+02 Score=17.90 Aligned_cols=26 Identities=4% Similarity=0.029 Sum_probs=19.1
Q ss_pred hhhHHHHHHHHHHHHhHhHhhHhHHH
Q psy1649 28 LGFLDVMVVVGNSLSNPIFCWLPFFS 53 (170)
Q Consensus 28 ~~~~k~~k~l~~vv~~F~icw~P~~v 53 (170)
+++++-+.++.+=+.+|++.++-|.+
T Consensus 15 ~R~r~Y~i~M~~Ri~~fvlA~~~~~~ 40 (73)
T PF11298_consen 15 RRRRRYLIMMGIRIPCFVLAAVVYRL 40 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34567777778888888888877654
No 95
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=24.10 E-value=1.6e+02 Score=21.11 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=10.8
Q ss_pred HHHHHHHhHhHhhHhHHHHHHHH
Q psy1649 36 VVGNSLSNPIFCWLPFFSLYLLG 58 (170)
Q Consensus 36 ~l~~vv~~F~icw~P~~v~~l~~ 58 (170)
++++++++.++.++|+.++.++.
T Consensus 101 ~~~clv~avvly~vP~r~l~l~~ 123 (156)
T PF08372_consen 101 VVFCLVAAVVLYFVPFRVLVLIW 123 (156)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHH
Confidence 33444444444455665544433
No 96
>PF11812 DUF3333: Domain of unknown function (DUF3333); InterPro: IPR024573 This N-terminal domain is functionally uncharacterised and it is found in proteins annotated as putative phosphate ABC transporter permease proteins. This presumed domain is typically between 116 to 159 amino acids in length.
Probab=23.71 E-value=2.6e+02 Score=19.96 Aligned_cols=26 Identities=8% Similarity=-0.017 Sum_probs=13.4
Q ss_pred hhhHHHHHHHHHHHHhHhHhhHhHHH
Q psy1649 28 LGFLDVMVVVGNSLSNPIFCWLPFFS 53 (170)
Q Consensus 28 ~~~~k~~k~l~~vv~~F~icw~P~~v 53 (170)
.++.|++-+.++++.+++++.+=+.|
T Consensus 12 e~rFr~~g~~Ai~~~l~fL~~ll~sI 37 (155)
T PF11812_consen 12 ERRFRAYGLAAIAIALAFLVILLFSI 37 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666665555555554443333
No 97
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=23.53 E-value=2.9e+02 Score=19.98 Aligned_cols=25 Identities=24% Similarity=0.491 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHc
Q psy1649 66 PKTIFNVMFWLGYCNSAVNPLIYALF 91 (170)
Q Consensus 66 ~~~~~~~~~~l~~~ns~~NPiiY~~~ 91 (170)
++.+..++.++++..+++. ..|++.
T Consensus 119 WDvMEPVTYfv~~~~~i~~-y~yfl~ 143 (180)
T PF04678_consen 119 WDVMEPVTYFVGYGTSILG-YAYFLY 143 (180)
T ss_pred cchhhhHHHHHhHHHHHHH-HHHHHH
Confidence 3567778888888888876 445443
No 98
>PF07010 Endomucin: Endomucin; InterPro: IPR010740 This family consists of several mammalian endomucin proteins. Endomucin is an early endothelial-specific antigen that is also expressed on putative hematopoietic progenitor cells.
Probab=23.15 E-value=76 Score=24.26 Aligned_cols=9 Identities=22% Similarity=0.065 Sum_probs=3.5
Q ss_pred hHHHHHHHH
Q psy1649 50 PFFSLYLLG 58 (170)
Q Consensus 50 P~~v~~l~~ 58 (170)
-|.++.++.
T Consensus 204 vf~LvgLyr 212 (259)
T PF07010_consen 204 VFTLVGLYR 212 (259)
T ss_pred HHHHHHHHH
Confidence 333344433
No 99
>PF15020 CATSPERD: Cation channel sperm-associated protein subunit delta
Probab=22.71 E-value=2e+02 Score=25.94 Aligned_cols=37 Identities=11% Similarity=-0.151 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhHhHhhHhHHHHHHHHhhcCCCchHHH
Q psy1649 33 VMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTI 69 (170)
Q Consensus 33 ~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~~~~~~~ 69 (170)
++..+++++++|+..|+-|.+..++....+..+...+
T Consensus 689 ~~~~l~~~~~~~~si~~~y~~pk~~~~~~g~~~~~~~ 725 (733)
T PF15020_consen 689 VATILLLLMLIFFSILLAYMIPKLLKTERGLRVKGFW 725 (733)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHhhhhhccchhHHH
Confidence 4567788899999999999999998877665544433
No 100
>PLN03190 aminophospholipid translocase; Provisional
Probab=22.70 E-value=2.3e+02 Score=27.21 Aligned_cols=71 Identities=15% Similarity=0.072 Sum_probs=33.6
Q ss_pred hhhhHHHHHHHHHHHHhHhH---hhHhHHHHHHHHhhcCCCchHHHHHHHHHHHHhhhhhhHHHHHHccHHHHHHH
Q psy1649 27 ALGFLDVMVVVGNSLSNPIF---CWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAF 99 (170)
Q Consensus 27 ~~~~~k~~k~l~~vv~~F~i---cw~P~~v~~l~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~ 99 (170)
.+++.-..++..++.-.|.= .-+|.+.+.++..|.+..+.+.++..+ .-.+-+.+.|++|+++.++.....
T Consensus 924 vHGr~~y~R~s~~i~y~fYKN~~~~~~qf~f~~~~~fSg~~ly~~~~~~~--yN~~fTslPii~~~ifD~dv~~~~ 997 (1178)
T PLN03190 924 VHGHWNYQRMGYMILYNFYRNAVFVLVLFWYVLFTCFTLTTAINEWSSVL--YSVIYTALPTIVVGILDKDLSRRT 997 (1178)
T ss_pred HhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH--HHHHHHhHHHHHHHHhcccCCHHH
Confidence 34454444444444444432 333455555555554554444332222 222444556667766666655443
No 101
>KOG2576|consensus
Probab=22.48 E-value=97 Score=25.95 Aligned_cols=25 Identities=24% Similarity=0.224 Sum_probs=21.5
Q ss_pred hhhHHHHHHHHHHHHhHhHhhHhHH
Q psy1649 28 LGFLDVMVVVGNSLSNPIFCWLPFF 52 (170)
Q Consensus 28 ~~~~k~~k~l~~vv~~F~icw~P~~ 52 (170)
.+..++++...++++.|.+|++|+.
T Consensus 218 ~~~~~vikL~~vv~~~F~~s~gPf~ 242 (500)
T KOG2576|consen 218 ANFLNVIKLGIVVLIPFAASFGPFI 242 (500)
T ss_pred hhhhhHHHHHHHHHHHHHHHhccHH
Confidence 3456889999999999999999973
No 102
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=22.39 E-value=5.2e+02 Score=22.49 Aligned_cols=62 Identities=15% Similarity=0.103 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCCC-----chH--HHHHHHHHHHHhhhhhhHHHHHHccH
Q psy1649 32 DVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDI-----IPK--TIFNVMFWLGYCNSAVNPLIYALFSK 93 (170)
Q Consensus 32 k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~~-----~~~--~~~~~~~~l~~~ns~~NPiiY~~~~~ 93 (170)
..+..+...+...++|++|-....++..+++.. ... .++.+...+.-+|=+.--++++..++
T Consensus 346 ~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~a~~ 414 (549)
T PF04506_consen 346 SNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSVASE 414 (549)
T ss_pred HHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHhCCH
Confidence 344445566666777888777777766655332 122 22222233334555555555555554
No 103
>PRK10697 DNA-binding transcriptional activator PspC; Provisional
Probab=22.37 E-value=2.3e+02 Score=19.23 Aligned_cols=31 Identities=3% Similarity=-0.147 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHhHhHhhHhHHHHHHHHhh
Q psy1649 30 FLDVMVVVGNSLSNPIFCWLPFFSLYLLGGF 60 (170)
Q Consensus 30 ~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~ 60 (170)
+..++++++++.+.|...++...++.++..+
T Consensus 32 ~~~~VRl~~vl~~~~~~~~~~~~~Yi~l~~~ 62 (118)
T PRK10697 32 PVKLVRIIVVLSIFFGLFVFTLVAYIILSFA 62 (118)
T ss_pred CHHHHHHHHHHHHHHhhchHHHHHHHHHHHh
Confidence 3455666544433332233333333333333
No 104
>PF12166 DUF3595: Protein of unknown function (DUF3595); InterPro: IPR021999 This family of proteins is functionally uncharacterised.This family of proteins is found in eukaryotes. Proteins in this family are typically between 578 and 2525 amino acids in length.
Probab=22.27 E-value=81 Score=26.09 Aligned_cols=28 Identities=14% Similarity=0.034 Sum_probs=21.5
Q ss_pred HHHHHHHHHhHhHhhHhHHHHHHHHhhc
Q psy1649 34 MVVVGNSLSNPIFCWLPFFSLYLLGGFY 61 (170)
Q Consensus 34 ~k~l~~vv~~F~icw~P~~v~~l~~~~~ 61 (170)
..=.++++++++|-|+|..++......+
T Consensus 65 ~~G~~~~~~li~iiw~PLllfS~~n~~~ 92 (422)
T PF12166_consen 65 LMGGLLLLLLIIIIWFPLLLFSSGNPVG 92 (422)
T ss_pred eehHHHHHHHHHHHHHHHHHHhhcCccc
Confidence 3336677888889999999998877654
No 105
>PRK01663 C4-dicarboxylate transporter DctA; Reviewed
Probab=22.26 E-value=4.7e+02 Score=21.91 Aligned_cols=29 Identities=14% Similarity=-0.047 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhHhHhhHhHHHHHHHHhhc
Q psy1649 33 VMVVVGNSLSNPIFCWLPFFSLYLLGGFY 61 (170)
Q Consensus 33 ~~k~l~~vv~~F~icw~P~~v~~l~~~~~ 61 (170)
.+.-++.-++-+++-++||-++.++....
T Consensus 180 ~~~~vi~kii~~im~laPiGVfaliA~~v 208 (428)
T PRK01663 180 SLSHVLFGIVNMIMKLAPIGAFGAMAFTI 208 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455566777889999999998876543
No 106
>KOG1558|consensus
Probab=22.11 E-value=1.4e+02 Score=24.15 Aligned_cols=27 Identities=22% Similarity=0.176 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHHHhHhHhhHhHHHHH
Q psy1649 29 GFLDVMVVVGNSLSNPIFCWLPFFSLY 55 (170)
Q Consensus 29 ~~~k~~k~l~~vv~~F~icw~P~~v~~ 55 (170)
...|++-+.++.+...+.+++|+.+..
T Consensus 16 ~~lKi~ai~vil~~s~i~~~~Pl~~~~ 42 (327)
T KOG1558|consen 16 LLLKIVAIFVILLLSLIGGLLPLFVRR 42 (327)
T ss_pred hhHHHHHHHHHHHHHHHHhcchHhhcc
Confidence 346788888888999999999998865
No 107
>COG3190 FliO Flagellar biogenesis protein [Cell motility and secretion]
Probab=21.61 E-value=1e+02 Score=21.61 Aligned_cols=19 Identities=11% Similarity=-0.008 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhHhHhhHhH
Q psy1649 33 VMVVVGNSLSNPIFCWLPF 51 (170)
Q Consensus 33 ~~k~l~~vv~~F~icw~P~ 51 (170)
...+++++.+++++||+=-
T Consensus 28 ~gsL~~iL~lil~~~wl~k 46 (137)
T COG3190 28 FGSLILILALILFLAWLVK 46 (137)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4566777777888888743
No 108
>PF10624 TraS: Plasmid conjugative transfer entry exclusion protein TraS; InterPro: IPR018898 Entry exclusion (Eex) is a process which prevents redundant transfer of DNA between donor cells. TraS is a protein involved in Eex. It blocks redundant conjugative DNA synthesis and transport between donor cells, and it is suggested that TraS interferes with a signalling pathway that is required to trigger DNA transfer []. TraS on the recipient cell is known to form an interaction with TraG on the donor cell [].
Probab=21.53 E-value=3e+02 Score=19.29 Aligned_cols=12 Identities=33% Similarity=0.382 Sum_probs=7.0
Q ss_pred HHHhhhhhhHHH
Q psy1649 76 LGYCNSAVNPLI 87 (170)
Q Consensus 76 l~~~ns~~NPii 87 (170)
++-..|.+||++
T Consensus 69 ~mpVcsllsPll 80 (164)
T PF10624_consen 69 LMPVCSLLSPLL 80 (164)
T ss_pred eecHHHHHhHHH
Confidence 344566667765
No 109
>PF01679 Pmp3: Proteolipid membrane potential modulator; InterPro: IPR000612 Proteolipid membrane potential modulator is an evolutionarily conserved proteolipid in the plasma membrane which, in S. pombe, is transcriptionally regulated by the Spc1 stress MAPK (mitogen-activated protein kinases) pathway. It functions to modulate the membrane potential, particularly to resist high cellular cation concentration. In eukaryotic organisms, stress-activated mitogen-activated protein kinases play crucial roles in transmitting environmental signals that will regulate gene expression for allowing the cell to adapt to cellular stress. Pmp3-like proteins are highly conserved in bacteria, yeast, nematode and plants. Proteins in this entry include the PMP3 as well as several other proteins that have been shown [] to be evolutionary related. These are small proteins of from 52 to 140 amino-acid resiudes that contain two transmembrane domains and belong to the UPF0057 (PMP3) protein family.; GO: 0016021 integral to membrane
Probab=21.18 E-value=76 Score=18.07 Aligned_cols=23 Identities=17% Similarity=0.132 Sum_probs=15.1
Q ss_pred HHHHHHHHhHhHhhHhHHHHHHH
Q psy1649 35 VVVGNSLSNPIFCWLPFFSLYLL 57 (170)
Q Consensus 35 k~l~~vv~~F~icw~P~~v~~l~ 57 (170)
+-+.+.++..++.|+|-.+..+|
T Consensus 25 ~~~~inl~Ltl~g~iPg~ihA~y 47 (51)
T PF01679_consen 25 KDFWINLLLTLLGWIPGVIHALY 47 (51)
T ss_pred hhhHHHHHHHHHHHHHHHHHeeE
Confidence 34566666677789997665544
No 110
>PRK14710 hypothetical protein; Provisional
Probab=20.72 E-value=1.4e+02 Score=18.31 Aligned_cols=22 Identities=5% Similarity=0.333 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHhHhHhhHhHH
Q psy1649 31 LDVMVVVGNSLSNPIFCWLPFF 52 (170)
Q Consensus 31 ~k~~k~l~~vv~~F~icw~P~~ 52 (170)
.|.+..++.++++.++|-..|.
T Consensus 9 skm~ififaiii~v~lcv~tyl 30 (86)
T PRK14710 9 SKMIIFIFAIIIIVVLCVITYL 30 (86)
T ss_pred hHHHHHHHHHHHHHHHHHhhhe
Confidence 3455666667777777776664
No 111
>COG4818 Predicted membrane protein [Function unknown]
Probab=20.70 E-value=2.6e+02 Score=18.34 Aligned_cols=25 Identities=12% Similarity=0.349 Sum_probs=18.9
Q ss_pred hhhHHHHHHHHHHHHhHhHhhHhHH
Q psy1649 28 LGFLDVMVVVGNSLSNPIFCWLPFF 52 (170)
Q Consensus 28 ~~~~k~~k~l~~vv~~F~icw~P~~ 52 (170)
+.-..++..+.+.++.+++.|+|+.
T Consensus 34 HAmQS~ltF~~l~~l~ill~~iP~I 58 (105)
T COG4818 34 HAMQSFLTFLGLWLLIILLAFIPYI 58 (105)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3345567777888888999999985
No 112
>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]
Probab=20.33 E-value=3.7e+02 Score=22.38 Aligned_cols=68 Identities=13% Similarity=0.047 Sum_probs=48.5
Q ss_pred hhhHHHHHHHHHHHHhHhHhhHhHHHHHHHHhhcCC--------------------CchHHHHHHHHHHHHhhhhhhHHH
Q psy1649 28 LGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPD--------------------IIPKTIFNVMFWLGYCNSAVNPLI 87 (170)
Q Consensus 28 ~~~~k~~k~l~~vv~~F~icw~P~~v~~l~~~~~~~--------------------~~~~~~~~~~~~l~~~ns~~NPii 87 (170)
++..-++-+++..+..+-+||.|-+...+|....+. .....+.-.++-+.|+=.+.=|++
T Consensus 273 ~r~~~~~~~~~~l~G~~G~~~~P~~~~~lw~~llG~G~G~~F~laL~li~~rs~~a~~Aa~LSgmaQg~GYllAa~GP~l 352 (395)
T COG2807 273 QRPLVVLALLLMLVGLVGLLLAPGQLPILWALLLGLGQGGAFPLALTLILLRSSDAAIAAALSGMAQGVGYLLAAFGPWL 352 (395)
T ss_pred cchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhCccchHHHHHHHHHHhhcCChHHHHHHHHHhhhhhHHHHhhhhhh
Confidence 344556777788888899999999888777322110 111255667777899999999999
Q ss_pred HHHccHHH
Q psy1649 88 YALFSKDF 95 (170)
Q Consensus 88 Y~~~~~~f 95 (170)
..+..+.+
T Consensus 353 ~G~lhDa~ 360 (395)
T COG2807 353 FGFLHDAT 360 (395)
T ss_pred HhHHHHhc
Confidence 99988743
No 113
>PLN00082 photosystem II reaction centre W protein (PsbW); Provisional
Probab=20.29 E-value=91 Score=18.71 Aligned_cols=19 Identities=16% Similarity=0.319 Sum_probs=14.1
Q ss_pred HHHHHHHhHhHhhHhHHHH
Q psy1649 36 VVGNSLSNPIFCWLPFFSL 54 (170)
Q Consensus 36 ~l~~vv~~F~icw~P~~v~ 54 (170)
.-.+.+.+|.+-|.-|+++
T Consensus 34 LgwIL~gvf~liw~ly~~~ 52 (67)
T PLN00082 34 LTWILVGVTALIWALYFSY 52 (67)
T ss_pred hhhHHHHHHHHHHHHHhhe
Confidence 4567778888888877763
No 114
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=20.13 E-value=1.6e+02 Score=15.62 Aligned_cols=12 Identities=25% Similarity=0.647 Sum_probs=6.0
Q ss_pred HhHhHhhHhHHH
Q psy1649 42 SNPIFCWLPFFS 53 (170)
Q Consensus 42 ~~F~icw~P~~v 53 (170)
+-|.+|++-+.+
T Consensus 7 ~dfylc~l~~ll 18 (43)
T PF11395_consen 7 FDFYLCFLSFLL 18 (43)
T ss_pred hHHHHHHHHHHH
Confidence 345555555443
Done!