RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1649
(170 letters)
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 101 bits (253), Expect = 4e-26
Identities = 21/68 (30%), Positives = 34/68 (50%)
Query: 45 IFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIIC 104
I W P+ + L+ F IP T++ + +WL Y NS +NP YAL + F+ FK ++
Sbjct: 398 IITWAPYNVMVLINTFCAPCIPNTVWTIGYWLCYINSTINPACYALCNATFKKTFKHLLM 457
Query: 105 KCFCAQNT 112
+
Sbjct: 458 CHYKNIGA 465
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 98.3 bits (245), Expect = 2e-25
Identities = 29/73 (39%), Positives = 42/73 (57%), Gaps = 2/73 (2%)
Query: 45 IFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKII- 103
CWLPFF + ++ F D++P +F WLGY NSA+NP+IY S DFR AFK+++
Sbjct: 242 TLCWLPFFLVNIVNVFNRDLVPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLA 300
Query: 104 CKCFCAQNTNLRH 116
+ + H
Sbjct: 301 FPRKADRRLHHHH 313
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 99.4 bits (247), Expect = 4e-25
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 45 IFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIIC 104
CWLPFF + ++ ++I K ++ ++ W+GY NS NPLIY S DFR AF++++C
Sbjct: 418 TLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELLC 476
Query: 105 KCFCAQNTNLRHNTSS 120
+ +S+
Sbjct: 477 LRRSSLKAYGNGYSSN 492
Score = 26.6 bits (58), Expect = 5.8
Identities = 6/38 (15%), Positives = 14/38 (36%)
Query: 4 SSAGSPSCSIPDWNEPKLLASLLALGFLDVMVVVGNSL 41
S +E ++ + + + + +V GN L
Sbjct: 23 RSHAPDHDVTQQRDEVWVVGMGIVMSLIVLAIVFGNVL 60
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 98.6 bits (245), Expect = 5e-25
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 45 IFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIIC 104
I CW+P+F +++ F + + + WLGY NS +NPLIY L +++F+ FK+I+
Sbjct: 383 ILCWIPYFIFFMVIAFCKNCCNEHLHMFTIWLGYINSTLNPLIYPLCNENFKKTFKRILH 442
Query: 105 KCFCAQNT 112
+N
Sbjct: 443 -IRSGENL 449
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 97.4 bits (242), Expect = 1e-24
Identities = 25/90 (27%), Positives = 33/90 (36%), Gaps = 8/90 (8%)
Query: 45 IFCWLPFFSLYLLGGFYPD--IIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKI 102
CWLP + F PD P + + L + NS VNP IYA ++FR F+KI
Sbjct: 364 ALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKI 423
Query: 103 ICKCFCAQNTNLRHNTSSKRRFRRDSNQSQ 132
I R K +
Sbjct: 424 IRSHVL------RQQEPFKAHHHHHHHHHH 447
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 97.5 bits (242), Expect = 2e-24
Identities = 25/90 (27%), Positives = 33/90 (36%), Gaps = 8/90 (8%)
Query: 45 IFCWLPFFSLYLLGGFYPD--IIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKI 102
CWLP + F PD P + + L + NS VNP IYA ++FR F+KI
Sbjct: 405 ALCWLPLHIINCFTFFCPDCSHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKI 464
Query: 103 ICKCFCAQNTNLRHNTSSKRRFRRDSNQSQ 132
I R K +
Sbjct: 465 IRSHVL------RQQEPFKAHHHHHHHHHH 488
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 96.1 bits (239), Expect = 6e-24
Identities = 26/76 (34%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
Query: 45 IFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIIC 104
CWLPFF + ++ ++I K ++ ++ W+GY NS NPLIY S DFR AF++++C
Sbjct: 432 TLCWLPFFIVNIVHVIQDNLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELLC 490
Query: 105 KCFCAQNTNLRHNTSS 120
+ +S+
Sbjct: 491 LRRSSLKAYGNGYSSN 506
Score = 26.4 bits (58), Expect = 5.5
Identities = 5/38 (13%), Positives = 17/38 (44%)
Query: 4 SSAGSPSCSIPDWNEPKLLASLLALGFLDVMVVVGNSL 41
++ + + +E ++ + + + + +V GN L
Sbjct: 165 TTFRTGTWDAYAADEVWVVGMGIVMSLIVLAIVFGNVL 202
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 95.6 bits (237), Expect = 9e-24
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 45 IFCWLPFFSLYLLGGFYPD-IIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKII 103
I CWLPFF ++L + +++ WLGY NSA+NP+IY F+ +FR AF KI+
Sbjct: 411 IVCWLPFFLTHVLNTHCQTCHVSPELYSATTWLGYVNSALNPVIYTTFNIEFRKAFLKIL 470
Query: 104 CKCFCAQNTNLR 115
C +
Sbjct: 471 S-CGRPLEVLFQ 481
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 94.2 bits (233), Expect = 3e-23
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
Query: 45 IFCWLPFFSLYLLGGFYPDIIPKTIFNVMF--WLGYCNSAVNPLIYALFSKDFRFAFKKI 102
I CW P F L LL +F + L NS NP+IY L +K+ R AF +I
Sbjct: 431 IACWAPLFILLLLDVGCKVKTCDILFRAEYFLVLAVLNSGTNPIIYTLTNKEMRRAFIRI 490
Query: 103 ICKCFCAQNTNLRHNT--SSKRRFRRDSNQ 130
+ + H+ ++ D ++
Sbjct: 491 MGRPLEVLFQGPHHHHHHHHHHDYKDDDDK 520
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 85.5 bits (212), Expect = 2e-20
Identities = 28/116 (24%), Positives = 42/116 (36%), Gaps = 12/116 (10%)
Query: 33 VMVVVGNSLSNPIF--CWLPFFSLYLLGGFYPDIIPKTIFNVMF----WLGYCNSAVNPL 86
++VVV F CWLPF +LL PD+ K ++ WL ++ NP+
Sbjct: 250 MIVVVC------TFAICWLPFHIFFLLPYINPDLYLKKFIQQVYLAIMWLAMSSTMYNPI 303
Query: 87 IYALFSKDFRFAFKKIICKCFCAQNTNLRHNTSSKRRFRRDSNQSQVSKRTNRSPS 142
IY + FR FK C + R+ + R + S
Sbjct: 304 IYCCLNDRFRLGFKHAFRCCPFISAGDYEGLEMKSTRYLQTQGSVYKVSRLETTIS 359
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 72.5 bits (178), Expect = 1e-15
Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 3/85 (3%)
Query: 45 IFCWLPFFSLYLLGGFYPDIIPKTIFNVMF---WLGYCNSAVNPLIYALFSKDFRFAFKK 101
+ CW P L G +T ++ LGY NS +NP++YA ++F+ F+K
Sbjct: 347 VGCWTPVQVFVLAQGLGVQPSSETAVAILRFCTALGYVNSCLNPILYAFLDENFKACFRK 406
Query: 102 IICKCFCAQNTNLRHNTSSKRRFRR 126
C + +
Sbjct: 407 FCCASALGRPLEVLFQGPHHHHHHH 431
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 60.8 bits (147), Expect = 1e-11
Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 45 IFCWLPFFS---LYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKK 101
I CW P + L ++ LGY NS +NP++YA ++F+ F++
Sbjct: 393 IVCWTPIHIYVIIKALITIPETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRCFRE 452
Query: 102 IICKC 106
Sbjct: 453 FCIPT 457
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 56.6 bits (137), Expect = 3e-10
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 1/78 (1%)
Query: 45 IFCWLPFFSLYLLGGF-YPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKII 103
+ CWLP+ + + + ++ NP+IY + +K FR +
Sbjct: 263 LICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTL 322
Query: 104 CKCFCAQNTNLRHNTSSK 121
C + T SK
Sbjct: 323 CCGKNPLGDDEASTTVSK 340
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 55.7 bits (134), Expect = 6e-10
Identities = 17/127 (13%), Positives = 38/127 (29%), Gaps = 9/127 (7%)
Query: 45 IFCWLPFFSLYLLGGFYP-DIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKII 103
+ W P+ + LL F P + + + ++ NP+IY++ FR A +
Sbjct: 271 LLSWSPYAVVALLAQFGPLEWVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTF 330
Query: 104 CKCFCAQNTNLRHNTSSKRRFRRDSNQSQVSKRTNRSPSYNYNDNSPLNYTQHQHSDSDQ 163
+ + K + + ++ +PS ++ Q
Sbjct: 331 PWVLTCCQFDDKETEDDK----DAETEIPAGESSDAAPS----ADAAQMKEMMAMMQKMQ 382
Query: 164 NANDNSR 170
Sbjct: 383 QQQAAYP 389
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 51.1 bits (122), Expect = 2e-08
Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 10/74 (13%)
Query: 45 IFCWLPFF------SLYLLGGFYPDIIPKTIFNVMF----WLGYCNSAVNPLIYALFSKD 94
CWLP++ S LL + + L + + +NP++YA
Sbjct: 423 FACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAK 482
Query: 95 FRFAFKKIICKCFC 108
F+ + + +
Sbjct: 483 FKTSAQHALTSGRP 496
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1,
membrane protein, signaling protein; NMR {Homo sapiens}
Length = 40
Score = 34.3 bits (78), Expect = 0.001
Identities = 18/39 (46%), Positives = 22/39 (56%)
Query: 68 TIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKIICKC 106
T+F L NS VNP+IYAL SKD R AF+ +
Sbjct: 1 TVFAFASMLCLLNSTVNPIIYALRSKDLRHAFRSMFPSA 39
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.005
Identities = 36/201 (17%), Positives = 64/201 (31%), Gaps = 54/201 (26%)
Query: 13 IPDWNEPKLLASL-LALGFLDVMVVVGNSLSNP--IFCWLPFFSLYLLGGF--------- 60
IP LL+ + + DVMVVV N L + ++ + +
Sbjct: 387 IP----TILLSLIWFDVIKSDVMVVV-NKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441
Query: 61 -----------Y--------PDIIPKTIFNVMFW-LGY-CNSAVNPLIYALFSK---DFR 96
Y D+IP + + +G+ + +P LF DFR
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR 501
Query: 97 FAFKKIICKCFCAQNTNLRHNTSSKRRFRRD---SNQSQVSKRTNRSPSYNYNDNSP--- 150
F +KI + NT + +F + N + + N D P
Sbjct: 502 FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN-----AILDFLPKIE 556
Query: 151 LNYTQHQHSDSDQNA--NDNS 169
N +++D + A ++
Sbjct: 557 ENLICSKYTDLLRIALMAEDE 577
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.096
Identities = 31/220 (14%), Positives = 61/220 (27%), Gaps = 75/220 (34%)
Query: 4 SSAGSPSCSIPDWNEPKLLASLLA--LGFLDVMV----------VVGNSLSNPIFCWLPF 51
P+ +EP A L+ LG++ +V V+ L+ F
Sbjct: 39 KILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTE-------F 91
Query: 52 FSLYLLGGFYPDI----------IPKTIFNVMFWL-GY---CNSAVNPL----------- 86
+ YL G DI T+ + Y A P
Sbjct: 92 ENCYLEGN---DIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRA 148
Query: 87 -------IYALF----------------SKDFRFAFKKIICKCFCAQNTNLRHNTSSKRR 123
+ A+F + + +I + +R +++
Sbjct: 149 VGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV 208
Query: 124 FRRDSNQSQVSKRTNRSPSYNYNDNSPLNY-----TQHQH 158
F + N + + + +P +Y + P++ Q H
Sbjct: 209 FTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAH 248
Score = 29.2 bits (65), Expect = 0.77
Identities = 13/78 (16%), Positives = 22/78 (28%), Gaps = 26/78 (33%)
Query: 44 PIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKII 103
P+ PF S L A + + L + F K I
Sbjct: 422 PVAS--PFHSHLL-----------------------VPASDLINKDLVKNNVSFNAKDIQ 456
Query: 104 CKCFCAQN-TNLRHNTSS 120
+ + ++LR + S
Sbjct: 457 IPVYDTFDGSDLRVLSGS 474
Score = 27.7 bits (61), Expect = 2.7
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 8/36 (22%)
Query: 60 FYPDIIPKTIFNVMFWLG------YCNSAVNPLIYA 89
F+ + K I V+F++G Y N+++ P I
Sbjct: 292 FF-VSVRKAI-TVLFFIGVRCYEAYPNTSLPPSILE 325
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic
aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo
sapiens} PDB: 2xiq_A* 3bic_A
Length = 762
Score = 30.4 bits (69), Expect = 0.29
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 19 PKLLASLLALGFLDVMVVVG 38
P+L+ L +LG D++V+ G
Sbjct: 673 PELIKELNSLGRPDILVMCG 692
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase;
HET: B12 DCA; 2.00A {Propionibacterium freudenreichii
subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A*
3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Length = 727
Score = 29.7 bits (67), Expect = 0.52
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 19 PKLLASLLALGFLDVMVVVG 38
P L L LG D+++ VG
Sbjct: 665 PALRKELDKLGRPDILITVG 684
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics,
NPPSFA, national project on structural and functional
analyses; 1.80A {Aeropyrum pernix}
Length = 161
Score = 27.7 bits (62), Expect = 1.5
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 19 PKLLASLLALGFLDVMVVVG 38
+L+A L LG D+ VV+G
Sbjct: 87 KRLMAKLRELGADDIPVVLG 106
>1jqk_A CODH, carbon monoxide dehydrogenase; rossmann fold, oxidoreductase;
2.80A {Rhodospirillum rubrum} SCOP: e.26.1.2
Length = 639
Score = 27.6 bits (61), Expect = 2.2
Identities = 8/35 (22%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 12 SIPDWNEPKLLASLLALGFLDVMVVVGNSLSNPIF 46
S P+ K LA + + VG+ P+
Sbjct: 560 SAPECMSEKALAIGSWAVTIGLPTHVGSVP--PVI 592
>1su8_A CODH 2, carbon monoxide dehydrogenase 2; nickel, cluster C,
oxidoreductase; HET: NFS; 1.10A {Carboxydothermus
hydrogenoformans} SCOP: e.26.1.2 PDB: 1su6_A* 1su7_A*
1suf_A* 2yiv_X* 3b51_X 3b52_X 3b53_X 3i39_X
Length = 636
Score = 27.3 bits (60), Expect = 2.9
Identities = 6/35 (17%), Positives = 11/35 (31%), Gaps = 2/35 (5%)
Query: 12 SIPDWNEPKLLASLLALGFLDVMVVVGNSLSNPIF 46
S + K +A + + +G PI
Sbjct: 555 SAAEAMHEKAVAIGTWAVTIGLPTHIGVLP--PIT 587
>2p0u_A Stilbenecarboxylate synthase 2; polyketide synthase, PKS type
transferase; 1.90A {Marchantia polymorpha}
Length = 413
Score = 26.5 bits (58), Expect = 4.5
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 107 FCAQNTNLRHNTSSKRRFRRDSNQSQVSKR 136
F TN + K +F+R ++S + KR
Sbjct: 57 FFFNITNSNDKPALKAKFQRICDKSGIKKR 86
>2d3m_A Pentaketide chromone synthase; chalcone synthase, polyketide
synthase, transferase; HET: COA; 1.60A {Aloe
arborescens} PDB: 2d51_A 2d52_A*
Length = 406
Score = 26.5 bits (58), Expect = 4.6
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 107 FCAQNTNLRHNTSSKRRFRRDSNQSQVSKR 136
+ TN H K++F ++ + KR
Sbjct: 52 VYFRATNSEHKVELKKKFDHICKKTMIGKR 81
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase;
transferase; 3.10A {Arabidospis thaliana}
Length = 979
Score = 26.5 bits (59), Expect = 5.3
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 112 TNLRHNTSSKRRFRRDSNQSQVSKR 136
T H T+ K++F R ++S + KR
Sbjct: 631 TKSEHMTALKKKFNRICDKSMIKKR 655
>4ags_A Thiol-dependent reductase 1; transferase, leishmaniasis,
DE-gluathionylation; HET: MSE GSH; 2.30A {Leishmania
infantum}
Length = 471
Score = 25.8 bits (57), Expect = 7.7
Identities = 6/33 (18%), Positives = 10/33 (30%), Gaps = 7/33 (21%)
Query: 28 LGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGF 60
+ DV ++ P F GG+
Sbjct: 400 MNAGDVAIL-------PFLVRAKAFMPEFSGGY 425
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.135 0.431
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,448,167
Number of extensions: 127285
Number of successful extensions: 256
Number of sequences better than 10.0: 1
Number of HSP's gapped: 245
Number of HSP's successfully gapped: 37
Length of query: 170
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 83
Effective length of database: 4,272,666
Effective search space: 354631278
Effective search space used: 354631278
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.0 bits)