RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1649
         (170 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 64.2 bits (155), Expect = 3e-13
 Identities = 15/80 (18%), Positives = 28/80 (35%), Gaps = 1/80 (1%)

Query: 45  IFCWLPFFSLYLLGGFYPD-IIPKTIFNVMFWLGYCNSAVNPLIYALFSKDFRFAFKKII 103
           + CWLP+  +      +           +  +    ++  NP+IY + +K FR      +
Sbjct: 262 LICWLPYAGVAFYIFTHQGSDFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTL 321

Query: 104 CKCFCAQNTNLRHNTSSKRR 123
           C        +    T SK  
Sbjct: 322 CCGKNPLGDDEASTTVSKTE 341


>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
           tuberculosis [TaxId: 1773]}
          Length = 165

 Score = 28.4 bits (62), Expect = 0.34
 Identities = 16/127 (12%), Positives = 33/127 (25%), Gaps = 7/127 (5%)

Query: 20  KLLASLLALGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDIIPKTIFNVMFWLGYC 79
           + LA  L +G LD  V +       I                   I + +          
Sbjct: 19  RRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQ-----EFRRIEEDVVRAALADHDG 73

Query: 80  NSAVNPLIYALFSKDFRFAFKKIICKCFCAQNTNLRHNTSSKRRFRRDSNQSQVSKR--T 137
             ++              A   ++     A     R   ++ R      ++++  +    
Sbjct: 74  VLSLGGGAVTSPGVRAALAGHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRALMA 133

Query: 138 NRSPSYN 144
            R+P Y 
Sbjct: 134 KRAPLYR 140


>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit
          {Archaeon Methanococcus jannaschii [TaxId: 2190]}
          Length = 56

 Score = 26.1 bits (58), Expect = 0.46
 Identities = 8/55 (14%), Positives = 21/55 (38%), Gaps = 14/55 (25%)

Query: 11 CSIPDWNEPKLLASLLALGFLDVMVVVGNSLSNPIFCWLPFFSLYLLGGFYPDII 65
             P  +E   +A + ALG   ++ ++G             + +++   +   I+
Sbjct: 15 LKKPTKDEYLAVAKVTALGIS-LLGIIG-------------YIIHVPATYIKGIL 55


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.135    0.431 

Gapped
Lambda     K      H
   0.267   0.0425    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 622,989
Number of extensions: 26525
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 9
Length of query: 170
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 91
Effective length of database: 1,322,926
Effective search space: 120386266
Effective search space used: 120386266
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.8 bits)