Query psy16493
Match_columns 151
No_of_seqs 132 out of 236
Neff 3.6
Searched_HMMs 29240
Date Fri Aug 16 22:42:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16493.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16493hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pdn_C Protein (PRD paired); p 99.7 1.3E-16 4.5E-21 110.6 6.1 117 25-142 1-126 (128)
2 1k78_A Paired box protein PAX5 99.6 3E-15 1E-19 109.4 8.5 124 22-146 13-145 (149)
3 2k27_A Paired box protein PAX- 99.4 9.1E-13 3.1E-17 97.6 8.4 123 22-145 6-137 (159)
4 1ic8_A Hepatocyte nuclear fact 98.2 1E-07 3.6E-12 76.4 -1.0 51 93-143 13-67 (194)
5 1u78_A TC3 transposase, transp 98.1 7.1E-06 2.4E-10 57.8 6.7 94 39-142 4-102 (141)
6 2h8r_A Hepatocyte nuclear fact 97.5 1.2E-05 4E-10 66.2 -0.9 51 92-142 13-67 (221)
7 3hot_A Transposable element ma 96.1 0.013 4.6E-07 46.7 6.5 86 41-142 6-109 (345)
8 1tc3_C Protein (TC3 transposas 95.7 0.0071 2.4E-07 34.6 2.8 42 39-81 1-48 (51)
9 2jn6_A Protein CGL2762, transp 85.7 0.79 2.7E-05 30.7 3.6 65 41-107 5-75 (97)
10 1jko_C HIN recombinase, DNA-in 81.5 0.71 2.4E-05 26.5 1.7 40 39-79 1-46 (52)
11 3f6o_A Probable transcriptiona 67.6 0.96 3.3E-05 31.5 -0.3 63 42-105 15-87 (118)
12 3jth_A Transcription activator 67.1 1.7 5.9E-05 28.8 0.9 42 42-84 20-66 (98)
13 2x48_A CAG38821; archeal virus 65.6 2.4 8.3E-05 25.3 1.3 26 51-77 29-54 (55)
14 1uxc_A FRUR (1-57), fructose r 65.1 2.1 7.3E-05 27.9 1.0 29 37-65 21-58 (65)
15 2jsc_A Transcriptional regulat 61.5 3.7 0.00013 28.6 1.8 41 43-84 19-64 (118)
16 1r1u_A CZRA, repressor protein 60.2 2.5 8.5E-05 28.7 0.7 42 42-84 23-69 (106)
17 1ub9_A Hypothetical protein PH 60.2 1.3 4.5E-05 28.7 -0.7 62 42-104 13-88 (100)
18 3pqk_A Biofilm growth-associat 57.3 2.2 7.6E-05 28.5 0.0 42 42-84 20-66 (102)
19 2zkz_A Transcriptional repress 48.4 7.9 0.00027 26.1 1.7 39 42-81 24-68 (99)
20 1qgp_A Protein (double strande 48.2 2.8 9.5E-05 28.0 -0.7 37 53-90 31-70 (77)
21 2oqg_A Possible transcriptiona 47.3 4.5 0.00015 27.0 0.3 59 44-103 20-88 (114)
22 3f6v_A Possible transcriptiona 46.4 4.6 0.00016 29.9 0.2 61 42-103 55-125 (151)
23 2l8n_A Transcriptional repress 45.8 13 0.00043 24.3 2.3 29 36-64 29-63 (67)
24 3cuo_A Uncharacterized HTH-typ 44.1 3 0.0001 27.0 -1.0 31 53-84 38-68 (99)
25 1y0u_A Arsenical resistance op 43.3 6.5 0.00022 26.0 0.6 42 42-84 28-73 (96)
26 2kko_A Possible transcriptiona 43.2 2.2 7.5E-05 29.3 -1.9 40 44-84 24-68 (108)
27 1u2w_A CADC repressor, cadmium 41.7 3.7 0.00013 28.8 -0.9 42 42-84 39-86 (122)
28 2heo_A Z-DNA binding protein 1 40.8 5.8 0.0002 25.5 0.0 31 53-84 25-55 (67)
29 1r1t_A Transcriptional repress 40.7 5.7 0.00019 28.1 -0.0 42 42-84 43-89 (122)
30 2y6x_A PSB27, photosystem II 1 38.6 9.6 0.00033 28.3 0.9 28 25-52 69-98 (113)
31 2pjp_A Selenocysteine-specific 37.6 6.6 0.00023 27.7 -0.1 66 53-119 20-90 (121)
32 2p4w_A Transcriptional regulat 37.5 5.8 0.0002 30.8 -0.5 36 43-79 13-53 (202)
33 1jgs_A Multiple antibiotic res 36.5 15 0.00052 24.7 1.6 54 51-105 46-107 (138)
34 2wte_A CSA3; antiviral protein 34.8 4.9 0.00017 32.2 -1.3 76 51-131 164-243 (244)
35 1qbj_A Protein (double-strande 34.6 12 0.0004 25.5 0.8 36 54-90 28-66 (81)
36 2kmf_A Photosystem II 11 kDa p 34.4 12 0.0004 27.8 0.8 28 25-52 73-102 (115)
37 3k0l_A Repressor protein; heli 34.4 8.9 0.0003 27.0 0.1 54 51-105 58-119 (162)
38 3jw4_A Transcriptional regulat 31.5 8.2 0.00028 26.6 -0.4 53 52-105 56-116 (148)
39 2xi8_A Putative transcription 31.3 58 0.002 18.8 3.5 42 51-104 12-53 (66)
40 2lkp_A Transcriptional regulat 31.3 9.2 0.00032 25.9 -0.2 31 53-84 45-75 (119)
41 1oyi_A Double-stranded RNA-bin 30.7 7.3 0.00025 27.2 -0.8 47 45-92 17-71 (82)
42 3kp7_A Transcriptional regulat 30.7 8.3 0.00028 26.7 -0.5 53 51-104 49-111 (151)
43 2o8x_A Probable RNA polymerase 30.3 17 0.00058 22.0 0.9 37 42-79 16-56 (70)
44 3oop_A LIN2960 protein; protei 29.8 7.6 0.00026 26.6 -0.9 54 51-105 49-110 (143)
45 1sfu_A 34L protein; protein/Z- 29.6 13 0.00044 25.8 0.3 37 54-91 30-69 (75)
46 2rdp_A Putative transcriptiona 29.5 10 0.00035 25.9 -0.3 53 51-104 54-114 (150)
47 2p8t_A Hypothetical protein PH 29.3 37 0.0012 27.0 2.9 73 52-125 29-123 (200)
48 3ech_A MEXR, multidrug resista 29.2 10 0.00035 25.9 -0.3 54 51-105 49-110 (142)
49 1z7u_A Hypothetical protein EF 28.7 9.7 0.00033 26.1 -0.5 33 51-84 33-66 (112)
50 2fbh_A Transcriptional regulat 28.4 11 0.00036 25.5 -0.3 51 52-103 51-109 (146)
51 3fm5_A Transcriptional regulat 28.3 17 0.00058 25.0 0.8 52 53-105 54-113 (150)
52 1lj9_A Transcriptional regulat 27.9 8.8 0.0003 26.1 -0.8 52 52-104 42-101 (144)
53 2gxg_A 146AA long hypothetical 27.6 11 0.00036 25.6 -0.4 53 51-104 48-108 (146)
54 2nnn_A Probable transcriptiona 27.2 11 0.00037 25.3 -0.4 53 51-104 50-110 (140)
55 2dk5_A DNA-directed RNA polyme 26.6 8.6 0.00029 26.6 -1.1 30 53-83 36-65 (91)
56 2pg4_A Uncharacterized protein 26.5 11 0.00037 24.8 -0.5 49 53-103 30-86 (95)
57 1on2_A Transcriptional regulat 25.5 14 0.00046 25.6 -0.2 32 52-84 21-52 (142)
58 3nrv_A Putative transcriptiona 25.4 13 0.00045 25.4 -0.3 53 52-105 53-113 (148)
59 3g3z_A NMB1585, transcriptiona 25.1 13 0.00046 25.3 -0.3 53 51-104 43-103 (145)
60 3nqo_A MARR-family transcripti 25.1 16 0.00053 26.9 0.1 52 52-104 56-115 (189)
61 3s2w_A Transcriptional regulat 24.9 10 0.00036 26.5 -0.9 54 51-105 62-123 (159)
62 3tgn_A ADC operon repressor AD 24.9 14 0.00048 25.1 -0.2 53 51-104 49-109 (146)
63 3hsr_A HTH-type transcriptiona 24.6 10 0.00035 26.0 -1.0 53 51-104 48-108 (140)
64 2hsg_A Glucose-resistance amyl 24.1 40 0.0014 25.9 2.3 27 38-64 24-56 (332)
65 2qvo_A Uncharacterized protein 24.0 11 0.00036 25.0 -1.0 30 54-84 31-60 (95)
66 3eco_A MEPR; mutlidrug efflux 23.9 11 0.00038 25.5 -0.9 52 53-105 47-106 (139)
67 3bdd_A Regulatory protein MARR 23.9 15 0.0005 24.7 -0.3 33 51-84 43-75 (142)
68 2qlz_A Transcription factor PF 23.8 17 0.00058 29.0 0.0 37 42-79 9-50 (232)
69 2fsw_A PG_0823 protein; alpha- 23.7 9.8 0.00034 25.8 -1.2 32 52-84 37-69 (107)
70 2ict_A Antitoxin HIGA; helix-t 23.6 1E+02 0.0035 19.6 3.9 46 51-108 19-64 (94)
71 2fbi_A Probable transcriptiona 23.6 11 0.00036 25.4 -1.0 54 51-105 48-109 (142)
72 1hlv_A CENP-B, major centromer 23.6 43 0.0015 22.8 2.1 63 40-103 6-84 (131)
73 2htj_A P fimbrial regulatory p 23.5 11 0.00039 24.3 -0.9 30 53-83 14-43 (81)
74 3bpv_A Transcriptional regulat 23.5 15 0.00053 24.5 -0.2 52 52-104 42-101 (138)
75 2fa5_A Transcriptional regulat 23.4 16 0.00055 25.3 -0.1 54 51-105 61-122 (162)
76 3bj6_A Transcriptional regulat 22.9 12 0.00043 25.5 -0.8 52 52-104 53-112 (152)
77 3cdh_A Transcriptional regulat 22.9 15 0.0005 25.4 -0.4 53 52-105 56-116 (155)
78 2qww_A Transcriptional regulat 22.8 13 0.00043 25.7 -0.8 53 52-105 54-116 (154)
79 2hzt_A Putative HTH-type trans 22.7 14 0.00049 25.0 -0.5 31 53-84 27-58 (107)
80 3e6m_A MARR family transcripti 22.5 11 0.00038 26.5 -1.1 54 51-105 65-126 (161)
81 4a1k_A Putative L, D-transpept 22.2 14 0.00049 27.7 -0.6 6 66-71 136-141 (165)
82 2hr3_A Probable transcriptiona 22.1 15 0.00053 24.9 -0.4 53 52-105 49-109 (147)
83 3hug_A RNA polymerase sigma fa 21.9 29 0.001 22.7 0.9 37 42-79 38-78 (92)
84 3bhq_A Transcriptional regulat 21.7 24 0.00082 25.0 0.5 38 34-72 1-50 (211)
85 3bro_A Transcriptional regulat 21.4 17 0.00059 24.4 -0.3 31 53-84 50-80 (141)
86 4aik_A Transcriptional regulat 21.2 19 0.00066 25.6 -0.1 32 52-84 45-76 (151)
87 2frh_A SARA, staphylococcal ac 21.0 13 0.00044 25.7 -1.1 52 52-104 52-111 (127)
88 1qpz_A PURA, protein (purine n 20.7 42 0.0014 26.0 1.7 25 41-65 26-55 (340)
89 3m8j_A FOCB protein; all-alpha 20.7 1.1E+02 0.0037 22.6 3.9 67 7-79 29-99 (111)
90 4hbl_A Transcriptional regulat 20.7 11 0.00036 26.3 -1.6 52 51-103 53-112 (149)
91 1ku9_A Hypothetical protein MJ 20.7 14 0.00048 24.8 -0.9 32 52-84 40-71 (152)
92 2a61_A Transcriptional regulat 20.6 19 0.00064 24.3 -0.3 53 51-104 45-105 (145)
93 1sfx_A Conserved hypothetical 20.6 19 0.00063 23.0 -0.3 32 52-84 33-64 (109)
94 1iuf_A Centromere ABP1 protein 20.5 1.5E+02 0.0052 21.1 4.7 53 88-145 7-62 (144)
95 3u2r_A Regulatory protein MARR 20.3 14 0.00047 26.2 -1.1 52 53-105 62-121 (168)
96 4b8x_A SCO5413, possible MARR- 20.3 14 0.00049 26.1 -1.0 31 53-84 51-81 (147)
No 1
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=99.65 E-value=1.3e-16 Score=110.60 Aligned_cols=117 Identities=32% Similarity=0.518 Sum_probs=99.0
Q ss_pred ccchhhhhcccccCCCCcchhhHHHH----HhhCCccchhhhhhhhhhhhhhhhhhhccCCC-----ccCCCCCcccChH
Q psy16493 25 LIGSLRELYALAASQQPLASLVNQQQ----RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPG-----LIGGSKPKVATPA 95 (151)
Q Consensus 25 ~~~~vNqLGg~f~nGRPLp~~~R~ki----~~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG-----~IGGSKPkvatp~ 95 (151)
++|++|++||+|.++++++.+.|.+| ..|....+||+.|.+ |+..|++.+.+|+..| .-+|.+|+..+++
T Consensus 1 ~~~~~~~~gg~~~m~~~~s~~~r~~i~~~~~~g~s~~~ia~~lgi-s~~Tv~~w~~~~~~~g~~~~~~~~g~~~~~l~~~ 79 (128)
T 1pdn_C 1 GQGRVNQLGGVFINGRPLPNNIRLKIVEMAADGIRPCVISRQLRV-SHGCVSKILNRYQETGSIRPGVIGGSKPRIATPE 79 (128)
T ss_dssp -CEEECTTSCEEETTSCCCHHHHHHHHHHHHTTCCHHHHHHHHTC-CHHHHHHHHHHHHHHCCSSCCCCSCCCCCSSCST
T ss_pred CCchHhhhcccccCCCcCCHHHHHHHHHHHHcCCCHHHHHHHHCc-CHHHHHHHHHHHHhhCCcccccCCCCCCCcCCHH
Confidence 57999999999999999999999998 579999999999985 9999999998875322 2244467777888
Q ss_pred HHHHHHHHhhhCCCcchHHHHhhhhhcCCCCCCCCCCCChhhHHHhh
Q psy16493 96 VVSKIEQYKRENPTIFAWEIRERLISEDVGVNGLALQTPPRNAIEEI 142 (151)
Q Consensus 96 V~~kI~~yk~enP~iFaWEIRdrLi~~gvC~~~~vPSVSSInRilR~ 142 (151)
..+.|.++..++|....|||.++|.++|++.....+|.++|+|+|+.
T Consensus 80 ~~~~i~~~~~~~~~~s~~~i~~~l~~~g~~~~~~~~s~~tv~r~l~~ 126 (128)
T 1pdn_C 80 IENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVRG 126 (128)
T ss_dssp HHHHHHHTTTTCTTCCHHHHHHHHHHTSSSCSTTCCCHHHHHHHC--
T ss_pred HHHHHHHHHHhCcchHHHHHHHHHHHcCCccccCCcCHHHHHHHHHh
Confidence 99999999999999999999999988888765666899999999975
No 2
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=99.59 E-value=3e-15 Score=109.39 Aligned_cols=124 Identities=41% Similarity=0.606 Sum_probs=101.2
Q ss_pred hccccchhhhhcccccCCCCcchhhHHHH----HhhCCccchhhhhhhhhhhhhhhhhhhccCCC-----ccCCCCCccc
Q psy16493 22 FNKLIGSLRELYALAASQQPLASLVNQQQ----RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPG-----LIGGSKPKVA 92 (151)
Q Consensus 22 ~~~~~~~vNqLGg~f~nGRPLp~~~R~ki----~~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG-----~IGGSKPkva 92 (151)
..++++++|+|||+|.+++.++.+.|.+| ..|....+||+.|.+ |...|++.+.+|+..| .-+|.+|+..
T Consensus 13 ~~~~~~~~~~~gg~~~~~~~~s~e~r~~iv~~~~~G~s~~~iA~~lgi-s~~TV~rw~~~~~~~G~~~~~~r~gr~~~~~ 91 (149)
T 1k78_A 13 SRTGHGGVNQLGGVFVNGRPLPDVVRQRIVELAHQGVRPCDISRQLRV-SHGCVSKILGRYYETGSIKPGVIGGSKPKVA 91 (149)
T ss_dssp ------CBCTTSCBCCTTSCCCHHHHHHHHHHHHTTCCHHHHHHHHTC-CHHHHHHHHHHHHHHSCCCCCCCCCCCCSSS
T ss_pred ccCCCCCccCCCceecCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHCc-CHHHHHHHHHHHHHcCCCCccCCCCCCCCCC
Confidence 45799999999999999999999999998 579999999999985 9999999998876322 2345557777
Q ss_pred ChHHHHHHHHHhhhCCCcchHHHHhhhhhcCCCCCCCCCCCChhhHHHhhhhcc
Q psy16493 93 TPAVVSKIEQYKRENPTIFAWEIRERLISEDVGVNGLALQTPPRNAIEEIKYST 146 (151)
Q Consensus 93 tp~V~~kI~~yk~enP~iFaWEIRdrLi~~gvC~~~~vPSVSSInRilR~k~~~ 146 (151)
+++.++.|.++..++|...+|||.++|..+++|.....+|.++|.|+|+....+
T Consensus 92 ~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~~~~ 145 (149)
T 1k78_A 92 TPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTKVQQ 145 (149)
T ss_dssp CHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTSSCTTTSCCHHHHHHHHHCC---
T ss_pred CHHHHHHHHHHHHhCcchhHHHHHHHHHHhcccccCCCcCHHHHHHHHHHHhcC
Confidence 899999999999999999999999999999988776678999999999876654
No 3
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=99.40 E-value=9.1e-13 Score=97.60 Aligned_cols=123 Identities=42% Similarity=0.605 Sum_probs=106.4
Q ss_pred hccccchhhhhcccccCCCCcchhhHHHH----HhhCCccchhhhhhhhhhhhhhhhhhhccCCCc-----cCCCCCccc
Q psy16493 22 FNKLIGSLRELYALAASQQPLASLVNQQQ----RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGL-----IGGSKPKVA 92 (151)
Q Consensus 22 ~~~~~~~vNqLGg~f~nGRPLp~~~R~ki----~~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~-----IGGSKPkva 92 (151)
..++.+.++++||.|..++.++.+.|.+| ..|....+||++|.+ |...|++.+.+|+..|. -+|.+|+..
T Consensus 6 ~~~~~~~~~~~g~~~~~~~~~s~e~r~~ii~l~~~G~s~~~IA~~lgi-s~~TV~rwl~r~~~~G~~~~~~r~gr~~~~~ 84 (159)
T 2k27_A 6 IRSGHGGLNQLGGAFVNGRPLPEVVRQRIVDLAHQGVRPCDISRQLRV-SHGCVSKILGRYYETGSIRPGVIGGSKPKVA 84 (159)
T ss_dssp CCCSCSSCCCCCCTTSSSCSSCHHHHHHHHHHHHHTCCHHHHHHHHTC-CSHHHHHHHCCSSTTSCCCCCCCCCCCCCCC
T ss_pred hhhcchhhhhcCCcCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHCc-CHHHHHHHHHHHHhcCCccCCCCCCCCCCCC
Confidence 35688999999999999999999999998 579999999999985 99999999999875443 244446667
Q ss_pred ChHHHHHHHHHhhhCCCcchHHHHhhhhhcCCCCCCCCCCCChhhHHHhhhhc
Q psy16493 93 TPAVVSKIEQYKRENPTIFAWEIRERLISEDVGVNGLALQTPPRNAIEEIKYS 145 (151)
Q Consensus 93 tp~V~~kI~~yk~enP~iFaWEIRdrLi~~gvC~~~~vPSVSSInRilR~k~~ 145 (151)
+++..+.|.++..++|....|||.++|.++++|.....+|.++|+|+|+....
T Consensus 85 ~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~ 137 (159)
T 2k27_A 85 TPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQ 137 (159)
T ss_dssp CTTHHHHHHHHHHHCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHCccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHhC
Confidence 88889999999999999999999999999999987777899999999986544
No 4
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=98.22 E-value=1e-07 Score=76.35 Aligned_cols=51 Identities=12% Similarity=0.065 Sum_probs=45.5
Q ss_pred ChHHHHHHHHHhhhCCCcchHHHHhhhhhcCCCCC----CCCCCCChhhHHHhhh
Q psy16493 93 TPAVVSKIEQYKRENPTIFAWEIRERLISEDVGVN----GLALQTPPRNAIEEIK 143 (151)
Q Consensus 93 tp~V~~kI~~yk~enP~iFaWEIRdrLi~~gvC~~----~~vPSVSSInRilR~k 143 (151)
.++|+++|++|++++|.+|+|+|++.|.+.|++.. ...+|.|+|+++++..
T Consensus 13 ~~~~~~~ie~~~~e~p~~l~~~Ik~~l~~~gitQ~~lA~~~GiSqs~ISr~l~~~ 67 (194)
T 1ic8_A 13 AAHQKAVVETLLQEDPWRVAKMVKSYLQQHNIPQREVVDTTGLNQSHLSQHLNKG 67 (194)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHHHHSB
T ss_pred hHHHHHHHHHHHccCHHHHHHHHHHHHHHcCCCHHHHHHHhCCChHHHHHHHhcC
Confidence 46899999999999999999999999999999755 4459999999999754
No 5
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=98.11 E-value=7.1e-06 Score=57.81 Aligned_cols=94 Identities=12% Similarity=0.071 Sum_probs=74.8
Q ss_pred CCCcchhhHHHH----HhhCCccchhhhhhhhhhhhhhhhhhhccCCCccC-CCCCcccChHHHHHHHHHhhhCCCcchH
Q psy16493 39 QQPLASLVNQQQ----RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIG-GSKPKVATPAVVSKIEQYKRENPTIFAW 113 (151)
Q Consensus 39 GRPLp~~~R~ki----~~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~IG-GSKPkvatp~V~~kI~~yk~enP~iFaW 113 (151)
++.|..+.|.+| ..|....+||+.|.+ |...|.+.+.++...|..+ ..+|+..+++....|.++ .++|..-+.
T Consensus 4 ~~~~s~~~r~~i~~~~~~G~s~~~ia~~lgi-s~~Tv~r~~~~~~~~g~~~~~gr~~~l~~~~~~~i~~~-~~~~~~s~~ 81 (141)
T 1u78_A 4 GSALSDTERAQLDVMKLLNVSLHEMSRKISR-SRHCIRVYLKDPVSYGTSKRAPRRKALSVRDERNVIRA-ASNSCKTAR 81 (141)
T ss_dssp SCCCCHHHHHHHHHHHHTTCCHHHHHHHHTC-CHHHHHHHHHSGGGTTCCCCCCCCCSSCHHHHHHHHHH-HHHCCCCHH
T ss_pred cccCCHHHHHHHHHHHHcCCCHHHHHHHHCc-CHHHHHHHHHcccccCCcCCCCCCCcCCHHHHHHHHHH-HhCCCCCHH
Confidence 356888888887 579999999999985 9999999999987555332 124566788888888888 778888888
Q ss_pred HHHhhhhhcCCCCCCCCCCCChhhHHHhh
Q psy16493 114 EIRERLISEDVGVNGLALQTPPRNAIEEI 142 (151)
Q Consensus 114 EIRdrLi~~gvC~~~~vPSVSSInRilR~ 142 (151)
||.++| |+ ..|.++|.|+|+.
T Consensus 82 ~i~~~l---g~-----~~s~~tV~r~l~~ 102 (141)
T 1u78_A 82 DIRNEL---QL-----SASKRTILNVIKR 102 (141)
T ss_dssp HHHHHT---TC-----CSCHHHHHHHHHH
T ss_pred HHHHHH---CC-----CccHHHHHHHHHH
Confidence 999888 33 2688999999975
No 6
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=97.46 E-value=1.2e-05 Score=66.21 Aligned_cols=51 Identities=10% Similarity=0.064 Sum_probs=45.9
Q ss_pred cChHHHHHHHHHhhhCCCcchHHHHhhhhhcCCCCCC----CCCCCChhhHHHhh
Q psy16493 92 ATPAVVSKIEQYKRENPTIFAWEIRERLISEDVGVNG----LALQTPPRNAIEEI 142 (151)
Q Consensus 92 atp~V~~kI~~yk~enP~iFaWEIRdrLi~~gvC~~~----~vPSVSSInRilR~ 142 (151)
..++|+..|++|.+++|.+|+|+||+.++..|+|... +.+|.|+|+++++.
T Consensus 13 ~~~~~~~~Ve~l~~~~~~~~~~~Ik~~r~~~gltQ~evA~~tGISqS~ISq~e~~ 67 (221)
T 2h8r_A 13 EAAEQRAEVDRMLSEDPWRAAKMIKGYMQQHNIPQREVVDVTGLNQSHLSQHLNK 67 (221)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred chHHHHHHHHHHHhcCcHHHHHHHHHHHHHcCCCHHHHHHHhCCCHHHHHHHHhC
Confidence 4578999999999999999999999999999998664 56999999999974
No 7
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=96.05 E-value=0.013 Score=46.67 Aligned_cols=86 Identities=10% Similarity=0.107 Sum_probs=66.0
Q ss_pred CcchhhHHHH----HhhCCccchhhhhh-------hhhhhhhhhhhhhccCCCc-------cCCCCCcccChHHHHHHHH
Q psy16493 41 PLASLVNQQQ----RLLFRHYDIAQHVL-------HQQQGAVSKLLGTLRPPGL-------IGGSKPKVATPAVVSKIEQ 102 (151)
Q Consensus 41 PLp~~~R~ki----~~GvRpcdISrqL~-------vVSHGCVSKIL~r~r~pG~-------IGGSKPkvatp~V~~kI~~ 102 (151)
|-..+.|.+| ..|....+|++.|. + |..-|.+++.+|+. |. -+| +|+..++ +.|.+
T Consensus 6 ~~~~~~R~~i~~~~~~G~s~~~~~~~l~~~~g~~~v-s~~tv~~w~~r~~~-g~~~l~~~~r~g-rp~~~~~---~~i~~ 79 (345)
T 3hot_A 6 PNKEQTRTVLIFCFHLKKTAAESHRMLVEAFGEQVP-TVKTCERWFQRFKS-GDFDVDDKEHGK-PPKRYED---AELQA 79 (345)
T ss_dssp CCHHHHHHHHHHHHHTTCCHHHHHHHHHHHTCSCSC-CHHHHHHHHHHHTT-CCCCCSCCCCCC-CCCSSCH---HHHHH
T ss_pred ccHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCCC-cHHHHHHHHHHHhC-CCccccCCCCCC-CCCcccH---HHHHH
Confidence 3445677777 68999999999987 6 88899999999874 42 244 5666665 34555
Q ss_pred HhhhCCCcchHHHHhhhhhcCCCCCCCCCCCChhhHHHhh
Q psy16493 103 YKRENPTIFAWEIRERLISEDVGVNGLALQTPPRNAIEEI 142 (151)
Q Consensus 103 yk~enP~iFaWEIRdrLi~~gvC~~~~vPSVSSInRilR~ 142 (151)
+-.++|..-.-||.+.| + -|.++|.|+|+.
T Consensus 80 ~v~~~~~~t~~~ia~~l---~-------vs~~tV~r~L~~ 109 (345)
T 3hot_A 80 LLDEDDAQTQKQLAEQL---E-------VSQQAVSNRLRE 109 (345)
T ss_dssp HHHHCSCCCHHHHHHHT---T-------SCHHHHHHHHHH
T ss_pred HHHhCccchHHHHHHHH---C-------CCHHHHHHHHHH
Confidence 66889999999999988 2 378999999985
No 8
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=95.74 E-value=0.0071 Score=34.65 Aligned_cols=42 Identities=10% Similarity=0.048 Sum_probs=34.8
Q ss_pred CCC--cchhhHHHH----HhhCCccchhhhhhhhhhhhhhhhhhhccCC
Q psy16493 39 QQP--LASLVNQQQ----RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPP 81 (151)
Q Consensus 39 GRP--Lp~~~R~ki----~~GvRpcdISrqL~vVSHGCVSKIL~r~r~p 81 (151)
||| |+...+.+| ..|....+||++|-+ |..-|.+++.+++.-
T Consensus 1 GR~~~l~~~~~~~i~~~~~~g~s~~~IA~~lgi-s~~Tv~~~~~~~~~~ 48 (51)
T 1tc3_C 1 PRGSALSDTERAQLDVMKLLNVSLHEMSRKISR-SRHCIRVYLKDPVSY 48 (51)
T ss_dssp CCSCCCCHHHHHHHHHHHHTTCCHHHHHHHHTC-CHHHHHHHHHCSTTT
T ss_pred CCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHCc-CHHHHHHHHhhHHhc
Confidence 565 777777776 579999999999985 999999999988743
No 9
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=85.68 E-value=0.79 Score=30.71 Aligned_cols=65 Identities=14% Similarity=0.089 Sum_probs=43.8
Q ss_pred CcchhhHHHH-----Hh-hCCccchhhhhhhhhhhhhhhhhhhccCCCccCCCCCcccChHHHHHHHHHhhhC
Q psy16493 41 PLASLVNQQQ-----RL-LFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIGGSKPKVATPAVVSKIEQYKREN 107 (151)
Q Consensus 41 PLp~~~R~ki-----~~-GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~IGGSKPkvatp~V~~kI~~yk~en 107 (151)
..+.+.+.++ .. |....+|++.+-+ |.+.|.+.+.+|+.-|.-+. .+.....+-.+.|.++++||
T Consensus 5 ~ys~e~k~~~v~~~~~~~g~s~~~ia~~~gI-s~~tl~rW~~~~~~~g~~~~-~~~~~~~~~~~ei~~L~~e~ 75 (97)
T 2jn6_A 5 TYSEEFKRDAVALYENSDGASLQQIANDLGI-NRVTLKNWIIKYGSNHNVQG-TTPSAAVSEAEQIRQLKKEN 75 (97)
T ss_dssp CCCHHHHHHHHHHHTTGGGSCHHHHHHHHTS-CHHHHHHHHHHHCCCSTTCS-CCCCHHHHTHHHHHHHHHCG
T ss_pred CCCHHHHHHHHHHHHHcCCChHHHHHHHHCc-CHHHHHHHHHHHhhcCcccC-CCCCCCCChHHHHHHHHHHH
Confidence 4556666665 24 8888999999985 99999999999984333222 22222334456677887776
No 10
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=81.55 E-value=0.71 Score=26.46 Aligned_cols=40 Identities=8% Similarity=-0.021 Sum_probs=29.1
Q ss_pred CCC--cchhhHHHH----HhhCCccchhhhhhhhhhhhhhhhhhhcc
Q psy16493 39 QQP--LASLVNQQQ----RLLFRHYDIAQHVLHQQQGAVSKLLGTLR 79 (151)
Q Consensus 39 GRP--Lp~~~R~ki----~~GvRpcdISrqL~vVSHGCVSKIL~r~r 79 (151)
||| |..+..+.| ..|....+|++.+-+ |..-|.++|.++.
T Consensus 1 GRp~~~~~~~~~~i~~l~~~g~s~~~ia~~lgv-s~~Tv~r~l~~~~ 46 (52)
T 1jko_C 1 GRPRAINKHEQEQISRLLEKGHPRQQLAIIFGI-GVSTLYRYFPASS 46 (52)
T ss_dssp CCCCSSCTTHHHHHHHHHHTTCCHHHHHHTTSC-CHHHHHHHSCTTC
T ss_pred CCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHCC-CHHHHHHHHHHcc
Confidence 455 344444444 578889999999985 9999999987653
No 11
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=67.57 E-value=0.96 Score=31.51 Aligned_cols=63 Identities=16% Similarity=0.112 Sum_probs=43.6
Q ss_pred cchhhHHHH-----HhhCCccchhhhhhhhhhhhhhhhhhhccCCCcc-----CCCCCcccChHHHHHHHHHhh
Q psy16493 42 LASLVNQQQ-----RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLI-----GGSKPKVATPAVVSKIEQYKR 105 (151)
Q Consensus 42 Lp~~~R~ki-----~~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~I-----GGSKPkvatp~V~~kI~~yk~ 105 (151)
|.+..|.+| ......+||+..|.+ |.+-||+-|..+..-|.| |..+-...+++....+..+-.
T Consensus 15 l~~~~R~~Il~~L~~~~~~~~eLa~~l~i-s~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l~~~~~ 87 (118)
T 3f6o_A 15 LADPTRRAVLGRLSRGPATVSELAKPFDM-ALPSFMKHIHFLEDSGWIRTHKQGRVRTCAIEKEPFTAVEAWLA 87 (118)
T ss_dssp HTSHHHHHHHHHHHTCCEEHHHHHTTCCS-CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhCCCCHHHHHHHhCc-CHHHHHHHHHHHHHCCCeEEEecCCEEEEEECHHHHHHHHHHHH
Confidence 567788887 235778899999985 999999999887655655 322333557766655554433
No 12
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=67.09 E-value=1.7 Score=28.77 Aligned_cols=42 Identities=24% Similarity=0.226 Sum_probs=32.5
Q ss_pred cchhhHHHH-----HhhCCccchhhhhhhhhhhhhhhhhhhccCCCcc
Q psy16493 42 LASLVNQQQ-----RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLI 84 (151)
Q Consensus 42 Lp~~~R~ki-----~~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~I 84 (151)
|.+..|.+| ..+++.+||+..+.+ |.+-||+-|..+..-|.|
T Consensus 20 l~~~~r~~Il~~L~~~~~~~~ela~~l~i-s~~tvs~~L~~L~~~Glv 66 (98)
T 3jth_A 20 MANERRLQILCMLHNQELSVGELCAKLQL-SQSALSQHLAWLRRDGLV 66 (98)
T ss_dssp HCSHHHHHHHHHTTTSCEEHHHHHHHHTC-CHHHHHHHHHHHHHTTSE
T ss_pred cCCHHHHHHHHHHhcCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCe
Confidence 555677777 335778899999985 999999999887655655
No 13
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=65.58 E-value=2.4 Score=25.32 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=22.3
Q ss_pred HhhCCccchhhhhhhhhhhhhhhhhhh
Q psy16493 51 RLLFRHYDIAQHVLHQQQGAVSKLLGT 77 (151)
Q Consensus 51 ~~GvRpcdISrqL~vVSHGCVSKIL~r 77 (151)
..|....+||+.|.+ |..-|++.+.+
T Consensus 29 ~~g~s~~eIA~~lgi-s~~TV~~~l~~ 54 (55)
T 2x48_A 29 KMGYTVQQIANALGV-SERKVRRYLES 54 (55)
T ss_dssp HTTCCHHHHHHHHTS-CHHHHHHHHTC
T ss_pred HcCCCHHHHHHHHCc-CHHHHHHHHHh
Confidence 579999999999985 99999988753
No 14
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=65.12 E-value=2.1 Score=27.94 Aligned_cols=29 Identities=3% Similarity=0.022 Sum_probs=17.2
Q ss_pred cCCCC----cchhhHHHH-----HhhCCccchhhhhhh
Q psy16493 37 ASQQP----LASLVNQQQ-----RLLFRHYDIAQHVLH 65 (151)
Q Consensus 37 ~nGRP----Lp~~~R~ki-----~~GvRpcdISrqL~v 65 (151)
+||++ ++.++|+|| ..|.+|...++.|+.
T Consensus 21 Lng~~~~~~vs~et~~rI~~aa~~lgY~pn~~a~~l~~ 58 (65)
T 1uxc_A 21 INGKAKQYRVSDKTVEKVMAVVREHNYHPNAVAAGLRL 58 (65)
T ss_dssp HHTCTTTTTCTTHHHHHHHHHHHHHTCCCC--------
T ss_pred HcCCCCCCCCCHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 45664 889999998 589999999999874
No 15
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=61.54 E-value=3.7 Score=28.61 Aligned_cols=41 Identities=24% Similarity=0.186 Sum_probs=32.1
Q ss_pred chhhHHHH-----HhhCCccchhhhhhhhhhhhhhhhhhhccCCCcc
Q psy16493 43 ASLVNQQQ-----RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLI 84 (151)
Q Consensus 43 p~~~R~ki-----~~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~I 84 (151)
.+..|.+| ....+.+||++.|.+ |.+-||+.|..+..-|.|
T Consensus 19 ~~~~r~~IL~~L~~~~~~~~eLa~~lgi-s~stvs~~L~~L~~~GlV 64 (118)
T 2jsc_A 19 ADPTRCRILVALLDGVCYPGQLAAHLGL-TRSNVSNHLSCLRGCGLV 64 (118)
T ss_dssp SSHHHHHHHHHHHTTCCSTTTHHHHHSS-CHHHHHHHHHHHTTTTSE
T ss_pred CCHHHHHHHHHHHcCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCce
Confidence 35566666 234788999999985 999999999998866765
No 16
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=60.24 E-value=2.5 Score=28.71 Aligned_cols=42 Identities=19% Similarity=0.085 Sum_probs=32.2
Q ss_pred cchhhHHHH-----HhhCCccchhhhhhhhhhhhhhhhhhhccCCCcc
Q psy16493 42 LASLVNQQQ-----RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLI 84 (151)
Q Consensus 42 Lp~~~R~ki-----~~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~I 84 (151)
|.+..|.+| +.+....||+..+.+ |.+-||+.|..+..-|.|
T Consensus 23 l~~~~r~~IL~~L~~~~~~~~ela~~l~i-s~stvs~~L~~L~~~Glv 69 (106)
T 1r1u_A 23 LGDYNRIRIMELLSVSEASVGHISHQLNL-SQSNVSHQLKLLKSVHLV 69 (106)
T ss_dssp TCSHHHHHHHHHHHHCCBCHHHHHHHHTC-CHHHHHHHHHHHHHTTSE
T ss_pred hCCHHHHHHHHHHHhCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCe
Confidence 445667776 345788999999985 999999999887655554
No 17
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=60.22 E-value=1.3 Score=28.72 Aligned_cols=62 Identities=16% Similarity=0.190 Sum_probs=40.4
Q ss_pred cchhhHHHH------HhhCCccchhhhhhhhhhhhhhhhhhhccCCCccCC-----CCCc---ccChHHHHHHHHHh
Q psy16493 42 LASLVNQQQ------RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIGG-----SKPK---VATPAVVSKIEQYK 104 (151)
Q Consensus 42 Lp~~~R~ki------~~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~IGG-----SKPk---vatp~V~~kI~~yk 104 (151)
|.+..|.+| ..+....||++.+.+ |.+-||+.|.++..-|.|-. .+++ ..|++-.+.+..+.
T Consensus 13 l~~~~~~~iL~~L~~~~~~~~~ela~~l~i-s~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~~~~~~~~ 88 (100)
T 1ub9_A 13 LGNPVRLGIMIFLLPRRKAPFSQIQKVLDL-TPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAKRFL 88 (100)
T ss_dssp HHSHHHHHHHHHHHHHSEEEHHHHHHHTTC-CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHhcCCcCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHHHHHHHHH
Confidence 445566665 245788899999985 99999999988764455421 1222 34777655554443
No 18
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=57.27 E-value=2.2 Score=28.53 Aligned_cols=42 Identities=26% Similarity=0.305 Sum_probs=31.7
Q ss_pred cchhhHHHH-----HhhCCccchhhhhhhhhhhhhhhhhhhccCCCcc
Q psy16493 42 LASLVNQQQ-----RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLI 84 (151)
Q Consensus 42 Lp~~~R~ki-----~~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~I 84 (151)
|.+..|.+| ....+..||++.+.+ |.+-||+-|..+..-|.|
T Consensus 20 l~~~~r~~Il~~L~~~~~~~~ela~~l~i-s~~tvs~~L~~L~~~Glv 66 (102)
T 3pqk_A 20 LSHPVRLMLVCTLVEGEFSVGELEQQIGI-GQPTLSQQLGVLRESGIV 66 (102)
T ss_dssp HCSHHHHHHHHHHHTCCBCHHHHHHHHTC-CTTHHHHHHHHHHHTTSE
T ss_pred cCCHHHHHHHHHHHhCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCe
Confidence 445677776 234788899999975 999999999887655554
No 19
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=48.42 E-value=7.9 Score=26.06 Aligned_cols=39 Identities=21% Similarity=0.146 Sum_probs=30.6
Q ss_pred cchhhHHHH------HhhCCccchhhhhhhhhhhhhhhhhhhccCC
Q psy16493 42 LASLVNQQQ------RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPP 81 (151)
Q Consensus 42 Lp~~~R~ki------~~GvRpcdISrqL~vVSHGCVSKIL~r~r~p 81 (151)
|.+..|.+| +.+...+||+..|.+ |.+-||+-|..++.-
T Consensus 24 L~~~~Rl~IL~~l~~~~~~~~~ela~~l~i-s~stvs~hL~~L~~~ 68 (99)
T 2zkz_A 24 MAHPMRLKIVNELYKHKALNVTQIIQILKL-PQSTVSQHLCKMRGK 68 (99)
T ss_dssp HCSHHHHHHHHHHHHHSCEEHHHHHHHHTC-CHHHHHHHHHHHBTT
T ss_pred hCCHHHHHHHHHHHHCCCcCHHHHHHHHCc-CHHHHHHHHHHHHHH
Confidence 446778776 234788899999985 999999999887744
No 20
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=48.20 E-value=2.8 Score=28.03 Aligned_cols=37 Identities=16% Similarity=0.289 Sum_probs=28.8
Q ss_pred hCCccchhhhhhhhhhhhhhhhhhhccCCCcc---CCCCCc
Q psy16493 53 LFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLI---GGSKPK 90 (151)
Q Consensus 53 GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~I---GGSKPk 90 (151)
+++.-|||++|.+ |...|.+.|.++..-|.| |+.+|+
T Consensus 31 ~~t~~eLA~~Lgv-s~~tV~~~L~~L~~~G~I~~~g~~~~~ 70 (77)
T 1qgp_A 31 ATTAHDLSGKLGT-PKKEINRVLYSLAKKGKLQKEAGTPPL 70 (77)
T ss_dssp CEEHHHHHHHHCC-CHHHHHHHHHHHHHHTSEEEECSSSCE
T ss_pred CcCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEecCCCCCc
Confidence 4788999999985 999999999988655665 443444
No 21
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=47.34 E-value=4.5 Score=27.01 Aligned_cols=59 Identities=20% Similarity=0.152 Sum_probs=37.9
Q ss_pred hhhHHHH-----HhhCCccchhhhhhhhhhhhhhhhhhhccCCCcc-----CCCCCcccChHHHHHHHHH
Q psy16493 44 SLVNQQQ-----RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLI-----GGSKPKVATPAVVSKIEQY 103 (151)
Q Consensus 44 ~~~R~ki-----~~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~I-----GGSKPkvatp~V~~kI~~y 103 (151)
+..|.+| +.+....||++.+.+ |.+-||+.|.++..-|.| |..+-...|+...+.+..+
T Consensus 20 ~~~r~~IL~~L~~~~~~~~ela~~l~i-s~~tv~~~l~~L~~~gli~~~~~gr~~~y~l~~~~~~~~~~~ 88 (114)
T 2oqg_A 20 DETRWEILTELGRADQSASSLATRLPV-SRQAIAKHLNALQACGLVESVKVGREIRYRALGAELNKTART 88 (114)
T ss_dssp CHHHHHHHHHHHHSCBCHHHHHHHSSS-CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHHHH
T ss_pred ChHHHHHHHHHHcCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCeeEEecCCEEEEEechHHHHHHHHH
Confidence 4456665 345788899999985 999999999887645554 2212224566654444443
No 22
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=46.38 E-value=4.6 Score=29.89 Aligned_cols=61 Identities=18% Similarity=0.196 Sum_probs=43.0
Q ss_pred cchhhHHHH-----HhhCCccchhhhhhhhhhhhhhhhhhhccCCCccC----C-CCCcccChHHHHHHHHH
Q psy16493 42 LASLVNQQQ-----RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIG----G-SKPKVATPAVVSKIEQY 103 (151)
Q Consensus 42 Lp~~~R~ki-----~~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~IG----G-SKPkvatp~V~~kI~~y 103 (151)
|.+.+|.+| +.....++|+..|-+ |.+-||+-|..++.-|.|- | .+-...|++....+.++
T Consensus 55 L~~p~R~~IL~~L~~~~~t~~eLa~~lgl-s~stvs~hL~~L~~aGlV~~~~~Gr~~~y~lt~~~~~~l~~~ 125 (151)
T 3f6v_A 55 AAEPTRRRLVQLLTSGEQTVNNLAAHFPA-SRSAISQHLRVLTEAGLVTPRKDGRFRYYRLDPQGLAQLRAL 125 (151)
T ss_dssp HTSHHHHHHHHHGGGCCEEHHHHHTTSSS-CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHHHHHHH
Confidence 445678887 335788999999985 9999999999887667662 2 22224577766666554
No 23
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=45.82 E-value=13 Score=24.27 Aligned_cols=29 Identities=7% Similarity=0.080 Sum_probs=16.3
Q ss_pred ccCCC-CcchhhHHHH-----HhhCCccchhhhhh
Q psy16493 36 AASQQ-PLASLVNQQQ-----RLLFRHYDIAQHVL 64 (151)
Q Consensus 36 f~nGR-PLp~~~R~ki-----~~GvRpcdISrqL~ 64 (151)
+.||+ ....++|+|| ..|.+|...++.|+
T Consensus 29 ~ln~~~~vs~~t~~rV~~~a~~lgY~pn~~a~~l~ 63 (67)
T 2l8n_A 29 ALMNPDKVSQATRNRVEKAAREVGYLPQPMGRNVK 63 (67)
T ss_dssp TTTCCCCSCHHHHHHHHHHHHHHCCCC--------
T ss_pred HHcCCCCCCHHHHHHHHHHHHHhCCCccHHHHHhh
Confidence 45665 4788999998 68999999998875
No 24
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=44.13 E-value=3 Score=26.99 Aligned_cols=31 Identities=23% Similarity=0.188 Sum_probs=25.4
Q ss_pred hCCccchhhhhhhhhhhhhhhhhhhccCCCcc
Q psy16493 53 LFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLI 84 (151)
Q Consensus 53 GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~I 84 (151)
+++..||++.+.+ |.+-||+.|.++..-|.|
T Consensus 38 ~~s~~ela~~l~i-s~~tvs~~l~~L~~~glv 68 (99)
T 3cuo_A 38 GTSAGELTRITGL-SASATSQHLARMRDEGLI 68 (99)
T ss_dssp SEEHHHHHHHHCC-CHHHHHHHHHHHHHTTSE
T ss_pred CcCHHHHHHHHCc-CHHHHHHHHHHHHHCCCE
Confidence 5788899999985 999999999887655554
No 25
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=43.31 E-value=6.5 Score=26.02 Aligned_cols=42 Identities=14% Similarity=0.014 Sum_probs=30.9
Q ss_pred cchhhHHHH----HhhCCccchhhhhhhhhhhhhhhhhhhccCCCcc
Q psy16493 42 LASLVNQQQ----RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLI 84 (151)
Q Consensus 42 Lp~~~R~ki----~~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~I 84 (151)
|.+..|.+| +.++...||++++.+ |..-|++.|..+..-|.|
T Consensus 28 l~~~~r~~Il~~L~~~~~~~eLa~~l~i-s~~tv~~~L~~L~~~Glv 73 (96)
T 1y0u_A 28 VTNPVRRKILRMLDKGRSEEEIMQTLSL-SKKQLDYHLKVLEAGFCI 73 (96)
T ss_dssp HSCHHHHHHHHHHHTTCCHHHHHHHHTC-CHHHHHHHHHHHHHTTSE
T ss_pred hCCHHHHHHHHHHcCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCE
Confidence 345566665 345888999999985 999999999887644443
No 26
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=43.25 E-value=2.2 Score=29.34 Aligned_cols=40 Identities=20% Similarity=0.000 Sum_probs=28.7
Q ss_pred hhhHHHH-----HhhCCccchhhhhhhhhhhhhhhhhhhccCCCcc
Q psy16493 44 SLVNQQQ-----RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLI 84 (151)
Q Consensus 44 ~~~R~ki-----~~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~I 84 (151)
+..|.+| ..+.+..||+..|.+ |.+-||+.|..+..-|.|
T Consensus 24 ~~~r~~IL~~L~~~~~s~~eLa~~lgi-s~stvs~~L~~L~~~GlV 68 (108)
T 2kko_A 24 NGRRLQILDLLAQGERAVEAIATATGM-NLTTASANLQALKSGGLV 68 (108)
T ss_dssp TSTTHHHHHHHTTCCEEHHHHHHHHTC-CHHHHHHHHHHHHHHTSE
T ss_pred CHHHHHHHHHHHcCCcCHHHHHHHHCc-CHHHHHHHHHHHHHCCCe
Confidence 4455555 234677899999975 999999999887644544
No 27
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=41.72 E-value=3.7 Score=28.79 Aligned_cols=42 Identities=21% Similarity=0.102 Sum_probs=31.9
Q ss_pred cchhhHHHH----H--hhCCccchhhhhhhhhhhhhhhhhhhccCCCcc
Q psy16493 42 LASLVNQQQ----R--LLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLI 84 (151)
Q Consensus 42 Lp~~~R~ki----~--~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~I 84 (151)
|.+..|.+| . .+...+||+..|.+ |.+-||+.|..+..-|.|
T Consensus 39 l~~~~rl~IL~~L~~~~~~s~~eLa~~l~i-s~stvs~~L~~L~~~Glv 86 (122)
T 1u2w_A 39 IADENRAKITYALCQDEELCVCDIANILGV-TIANASHHLRTLYKQGVV 86 (122)
T ss_dssp HHSHHHHHHHHHHHHSSCEEHHHHHHHHTC-CHHHHHHHHHHHHHTTSE
T ss_pred hCCHHHHHHHHHHHHCCCcCHHHHHHHHCc-CHHHHHHHHHHHHHCCCe
Confidence 456667776 2 34778899999985 999999999887655554
No 28
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=40.76 E-value=5.8 Score=25.48 Aligned_cols=31 Identities=6% Similarity=0.170 Sum_probs=25.6
Q ss_pred hCCccchhhhhhhhhhhhhhhhhhhccCCCcc
Q psy16493 53 LFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLI 84 (151)
Q Consensus 53 GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~I 84 (151)
.+...|||++|-+ |..-|.|+|..++.-|.|
T Consensus 25 ~~s~~eLA~~lgl-sr~tv~~~l~~L~~~G~I 55 (67)
T 2heo_A 25 PVAIFQLVKKCQV-PKKTLNQVLYRLKKEDRV 55 (67)
T ss_dssp CEEHHHHHHHHCS-CHHHHHHHHHHHHHTTSE
T ss_pred CcCHHHHHHHHCc-CHHHHHHHHHHHHHCCcE
Confidence 3778899999985 999999999888755555
No 29
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=40.73 E-value=5.7 Score=28.07 Aligned_cols=42 Identities=31% Similarity=0.228 Sum_probs=31.3
Q ss_pred cchhhHHHH-----HhhCCccchhhhhhhhhhhhhhhhhhhccCCCcc
Q psy16493 42 LASLVNQQQ-----RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLI 84 (151)
Q Consensus 42 Lp~~~R~ki-----~~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~I 84 (151)
|.+..|.+| +.+...+||++.|.+ |.+-||+.|..+..-|.+
T Consensus 43 L~~~~rl~IL~~L~~~~~s~~ela~~lgi-s~stvs~~L~~Le~~Glv 89 (122)
T 1r1t_A 43 LADPNRLRLLSLLARSELCVGDLAQAIGV-SESAVSHQLRSLRNLRLV 89 (122)
T ss_dssp HCCHHHHHHHHHHTTCCBCHHHHHHHHTC-CHHHHHHHHHHHHHTTSE
T ss_pred hCCHHHHHHHHHHHcCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCe
Confidence 345566666 225788899999985 999999999887655554
No 30
>2y6x_A PSB27, photosystem II 11 KD protein; photosynthesis; 1.60A {Thermosynechococcus elongatus}
Probab=38.61 E-value=9.6 Score=28.28 Aligned_cols=28 Identities=14% Similarity=0.221 Sum_probs=23.3
Q ss_pred ccchhhhhccccc--CCCCcchhhHHHHHh
Q psy16493 25 LIGSLRELYALAA--SQQPLASLVNQQQRL 52 (151)
Q Consensus 25 ~~~~vNqLGg~f~--nGRPLp~~~R~ki~~ 52 (151)
-..-+|+|.|-|. .-||||+..+.|+..
T Consensus 69 m~tAlNaLAGHY~s~g~~PlPek~k~Rl~~ 98 (113)
T 2y6x_A 69 MQTALNSLAGHYSSYPNRPLPEKLKARLEQ 98 (113)
T ss_dssp HHHHHHHHHHHHHHCTTSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Confidence 3467899999987 589999999999843
No 31
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=37.56 E-value=6.6 Score=27.69 Aligned_cols=66 Identities=18% Similarity=0.175 Sum_probs=40.2
Q ss_pred hCCccchhhhhhhhhhhhhhhhhhhccCCCcc-----CCCCCcccChHHHHHHHHHhhhCCCcchHHHHhhh
Q psy16493 53 LFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLI-----GGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERL 119 (151)
Q Consensus 53 GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~I-----GGSKPkvatp~V~~kI~~yk~enP~iFaWEIRdrL 119 (151)
+..+.|++..+.+ +..-+.++|..+..-|.+ +.--.+-+..+..+.|.++-.+++.|-..|.||.|
T Consensus 20 p~~~~~la~~~~~-~~~~~~~~l~~l~~~G~l~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~it~ae~Rd~l 90 (121)
T 2pjp_A 20 PWWVRDLAKETGT-DEQAMRLTLRQAAQQGIITAIVKDRYYRNDRIVEFANMIRDLDQECGSTCAADFRDRL 90 (121)
T ss_dssp CEEHHHHHHHTTC-CHHHHHHHHHHHHHTTSEEEEETTEEEEHHHHHHHHHHHHHHHHHHSSEEHHHHHHHH
T ss_pred CCCHHHHHHHhCC-CHHHHHHHHHHHHHCCCEEEecCCceECHHHHHHHHHHHHHHHHHCCCccHHHHHHHH
Confidence 3344566666653 555555555443322211 11122334456777888888899999999999998
No 32
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=37.52 E-value=5.8 Score=30.83 Aligned_cols=36 Identities=14% Similarity=0.099 Sum_probs=27.8
Q ss_pred chhhHHHH-----HhhCCccchhhhhhhhhhhhhhhhhhhcc
Q psy16493 43 ASLVNQQQ-----RLLFRHYDIAQHVLHQQQGAVSKLLGTLR 79 (151)
Q Consensus 43 p~~~R~ki-----~~GvRpcdISrqL~vVSHGCVSKIL~r~r 79 (151)
.+..|.+| +.....+||++.|.+ |++-||+.|.++.
T Consensus 13 ~~~~rl~IL~~L~~~~~s~~eLa~~l~i-s~stvs~hLk~Le 53 (202)
T 2p4w_A 13 GNETRRRILFLLTKRPYFVSELSRELGV-GQKAVLEHLRILE 53 (202)
T ss_dssp HSHHHHHHHHHHHHSCEEHHHHHHHHTC-CHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCHHHHHHHHCc-CHHHHHHHHHHHH
Confidence 34566665 345788999999985 9999999997764
No 33
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=36.54 E-value=15 Score=24.66 Aligned_cols=54 Identities=17% Similarity=0.178 Sum_probs=36.9
Q ss_pred HhhCCccchhhhhhhhhhhhhhhhhhhccCCCcc-----CCCCC-c--ccChHHHHHHHHHhh
Q psy16493 51 RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLI-----GGSKP-K--VATPAVVSKIEQYKR 105 (151)
Q Consensus 51 ~~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~I-----GGSKP-k--vatp~V~~kI~~yk~ 105 (151)
+.++.+.+|+..+.+ +.+=||++|.++..-|.| ...+. + ..|++-.+.+++...
T Consensus 46 ~~~~~~~~la~~l~~-~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~~ 107 (138)
T 1jgs_A 46 AACITPVELKKVLSV-DLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQCHQ 107 (138)
T ss_dssp HSSBCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCC-ChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHHHHHHH
Confidence 457899999999985 999999999887544444 11122 2 348876666655443
No 34
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=34.82 E-value=4.9 Score=32.19 Aligned_cols=76 Identities=12% Similarity=0.096 Sum_probs=36.3
Q ss_pred HhhCCccchhhhhhhhhhhhhhhhhhhccCCCccCCC---CCcccChHHHHHHHHHhhhCCCcchHH-HHhhhhhcCCCC
Q psy16493 51 RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIGGS---KPKVATPAVVSKIEQYKRENPTIFAWE-IRERLISEDVGV 126 (151)
Q Consensus 51 ~~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~IGGS---KPkvatp~V~~kI~~yk~enP~iFaWE-IRdrLi~~gvC~ 126 (151)
+.+++..|||+.|.+ +.+=|+++|.++..-|.|-.. +--..|+.-.+.. ...-.++.|. +.+++.++|--+
T Consensus 164 ~~~~s~~eLA~~lgl-sksTv~r~L~~Le~~GlV~r~~r~~~~~LT~~G~~l~----~~~~~~~~w~~aq~~~~~~~~~~ 238 (244)
T 2wte_A 164 TKGTGITELAKMLDK-SEKTLINKIAELKKFGILTQKGKDRKVELNELGLNVI----KLNKSVIESSKSSEELVKENKGK 238 (244)
T ss_dssp HTCBCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEETTTTEEEECHHHHHHH----HHTC-------------------
T ss_pred cCCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEEeCCccEEEECHHHHHHH----HHHhcccccHHHHHHHHhhcCCc
Confidence 357889999999985 999999999998755665321 2224477664433 3355788886 788888776666
Q ss_pred CCCCC
Q psy16493 127 NGLAL 131 (151)
Q Consensus 127 ~~~vP 131 (151)
.-|+|
T Consensus 239 ~~~~~ 243 (244)
T 2wte_A 239 EVNIP 243 (244)
T ss_dssp -----
T ss_pred ccCCC
Confidence 66666
No 35
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=34.57 E-value=12 Score=25.46 Aligned_cols=36 Identities=17% Similarity=0.308 Sum_probs=28.9
Q ss_pred CCccchhhhhhhhhhhhhhhhhhhccCCCcc---CCCCCc
Q psy16493 54 FRHYDIAQHVLHQQQGAVSKLLGTLRPPGLI---GGSKPK 90 (151)
Q Consensus 54 vRpcdISrqL~vVSHGCVSKIL~r~r~pG~I---GGSKPk 90 (151)
++..+||++|-+ |..-|.+.|.++..-|.| |+.+|+
T Consensus 28 ~t~~eLA~~Lgv-sr~tV~~~L~~Le~~G~I~~~g~~~~~ 66 (81)
T 1qbj_A 28 TTAHDLSGKLGT-PKKEINRVLYSLAKKGKLQKEAGTPPL 66 (81)
T ss_dssp BCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEESSSSCE
T ss_pred cCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEecCCCCCe
Confidence 777899999985 999999999998655665 554555
No 36
>2kmf_A Photosystem II 11 kDa protein; PSB27, structure, helical bundle, cyanobacteria, photosynthesis; NMR {Synechocystis SP} PDB: 2knd_A
Probab=34.43 E-value=12 Score=27.83 Aligned_cols=28 Identities=14% Similarity=0.312 Sum_probs=23.3
Q ss_pred ccchhhhhccccc--CCCCcchhhHHHHHh
Q psy16493 25 LIGSLRELYALAA--SQQPLASLVNQQQRL 52 (151)
Q Consensus 25 ~~~~vNqLGg~f~--nGRPLp~~~R~ki~~ 52 (151)
-..-+|+|.|-|. .-||||...+.||.+
T Consensus 73 m~tAlNaLAGHY~s~g~~PlPek~k~Rl~~ 102 (115)
T 2kmf_A 73 MQTALNSLAGYYTSYGARPIPEKLKKRLQL 102 (115)
T ss_dssp HHHHHHHHHHHHHHHSSCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Confidence 3467899999997 589999999999843
No 37
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=34.41 E-value=8.9 Score=27.02 Aligned_cols=54 Identities=19% Similarity=0.297 Sum_probs=37.2
Q ss_pred HhhCCccchhhhhhhhhhhhhhhhhhhccCCCccC-----CCCCc---ccChHHHHHHHHHhh
Q psy16493 51 RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIG-----GSKPK---VATPAVVSKIEQYKR 105 (151)
Q Consensus 51 ~~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~IG-----GSKPk---vatp~V~~kI~~yk~ 105 (151)
+.|+++.||++.+.+ +.+-||++|.++..-|.|- .-+.. ..|+.-.+.+++...
T Consensus 58 ~~~~t~~eLa~~l~~-~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~~ 119 (162)
T 3k0l_A 58 KPNLSNAKLAERSFI-KPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLNQCNQ 119 (162)
T ss_dssp CTTCCHHHHHHHHTS-CGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCC-CHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHHHHHHH
Confidence 357899999999985 9999999999876445542 11222 347776666655543
No 38
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=31.52 E-value=8.2 Score=26.63 Aligned_cols=53 Identities=17% Similarity=0.246 Sum_probs=30.4
Q ss_pred hhCCccchhhhhhhhhhhhhhhhhhhccCCCccCCC-----CCc---ccChHHHHHHHHHhh
Q psy16493 52 LLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIGGS-----KPK---VATPAVVSKIEQYKR 105 (151)
Q Consensus 52 ~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~IGGS-----KPk---vatp~V~~kI~~yk~ 105 (151)
.|+++.||++.+.+ +.+-||+++.++..-|.|--. +.. ..|++-.+.+++...
T Consensus 56 ~~~t~~eLa~~l~~-~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~~ 116 (148)
T 3jw4_A 56 SGIIQKDLAQFFGR-RGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVEEFNN 116 (148)
T ss_dssp TCCCHHHHHHC-------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCC-ChhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHHHHHHH
Confidence 57899999999985 999999999987644554211 111 347766555554443
No 39
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=31.29 E-value=58 Score=18.84 Aligned_cols=42 Identities=12% Similarity=0.164 Sum_probs=30.0
Q ss_pred HhhCCccchhhhhhhhhhhhhhhhhhhccCCCccCCCCCcccChHHHHHHHHHh
Q psy16493 51 RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIGGSKPKVATPAVVSKIEQYK 104 (151)
Q Consensus 51 ~~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~IGGSKPkvatp~V~~kI~~yk 104 (151)
..|+...++|+.+-+ |..-||++..- ...| +.+...+|.++-
T Consensus 12 ~~g~s~~~lA~~~gi-s~~~i~~~e~g--------~~~~---~~~~l~~i~~~l 53 (66)
T 2xi8_A 12 KKKISQSELAALLEV-SRQTINGIEKN--------KYNP---SLQLALKIAYYL 53 (66)
T ss_dssp HTTCCHHHHHHHHTS-CHHHHHHHHTT--------SCCC---CHHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCc-CHHHHHHHHcC--------CCCC---CHHHHHHHHHHH
Confidence 689999999999985 99999998852 1223 455566665543
No 40
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=31.29 E-value=9.2 Score=25.93 Aligned_cols=31 Identities=35% Similarity=0.400 Sum_probs=25.2
Q ss_pred hCCccchhhhhhhhhhhhhhhhhhhccCCCcc
Q psy16493 53 LFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLI 84 (151)
Q Consensus 53 GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~I 84 (151)
+....+||+.|.+ |.+-||+.|.++..-|.+
T Consensus 45 ~~s~~ela~~l~i-s~stvsr~l~~Le~~Glv 75 (119)
T 2lkp_A 45 PLPVTDLAEAIGM-EQSAVSHQLRVLRNLGLV 75 (119)
T ss_dssp CCCHHHHHHHHSS-CHHHHHHHHHHHHHHCSE
T ss_pred CCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCE
Confidence 6888999999985 999999999887544443
No 41
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=30.73 E-value=7.3 Score=27.18 Aligned_cols=47 Identities=11% Similarity=0.071 Sum_probs=35.5
Q ss_pred hhHHHH-----HhhCCccchhhhhhhhhhhhhhhhhhhccCCCcc---CCCCCccc
Q psy16493 45 LVNQQQ-----RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLI---GGSKPKVA 92 (151)
Q Consensus 45 ~~R~ki-----~~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~I---GGSKPkva 92 (151)
.++++| ..|...-+||++|-+ |...|-+.|.++..-|.| +|.-|++.
T Consensus 17 ~~~~~IL~lL~~~g~sa~eLAk~Lgi-Sk~aVr~~L~~Le~eG~I~~~~~~PP~W~ 71 (82)
T 1oyi_A 17 EIVCEAIKTIGIEGATAAQLTRQLNM-EKREVNKALYDLQRSAMVYSSDDIPPRWF 71 (82)
T ss_dssp HHHHHHHHHHSSSTEEHHHHHHHSSS-CHHHHHHHHHHHHHHTSSEECSSSSCEEE
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCEEeCCCCCCcce
Confidence 456666 467888899999985 999999999888544554 56667743
No 42
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=30.69 E-value=8.3 Score=26.70 Aligned_cols=53 Identities=17% Similarity=0.051 Sum_probs=36.3
Q ss_pred HhhCCccchhhhhhhhhhhhhhhhhhhccCCCccCCCC------Cc----ccChHHHHHHHHHh
Q psy16493 51 RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIGGSK------PK----VATPAVVSKIEQYK 104 (151)
Q Consensus 51 ~~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~IGGSK------Pk----vatp~V~~kI~~yk 104 (151)
..++++.|||..+.+ +.+-||+++.++..-|.|---| .| ..|++-.+.+++..
T Consensus 49 ~~~~t~~eLa~~l~~-~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~~~~~ 111 (151)
T 3kp7_A 49 IEALTVGQITEKQGV-NKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYIKERK 111 (151)
T ss_dssp HSCBCHHHHHHHHCS-CSSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHCC-CHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHHHHHH
Confidence 467899999999985 9999999999876556654311 12 34776655555443
No 43
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=30.27 E-value=17 Score=21.97 Aligned_cols=37 Identities=16% Similarity=0.056 Sum_probs=28.4
Q ss_pred cchhhHHHH----HhhCCccchhhhhhhhhhhhhhhhhhhcc
Q psy16493 42 LASLVNQQQ----RLLFRHYDIAQHVLHQQQGAVSKLLGTLR 79 (151)
Q Consensus 42 Lp~~~R~ki----~~GvRpcdISrqL~vVSHGCVSKIL~r~r 79 (151)
||...|+=+ ..|....+||..|.+ |.+-|.+.+.+.+
T Consensus 16 L~~~~r~il~l~~~~g~s~~eIA~~lgi-s~~tv~~~~~ra~ 56 (70)
T 2o8x_A 16 LTTDQREALLLTQLLGLSYADAAAVCGC-PVGTIRSRVARAR 56 (70)
T ss_dssp SCHHHHHHHHHHHTSCCCHHHHHHHHTS-CHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHCc-CHHHHHHHHHHHH
Confidence 665555444 468999999999985 9999999887643
No 44
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=29.77 E-value=7.6 Score=26.56 Aligned_cols=54 Identities=13% Similarity=0.094 Sum_probs=36.3
Q ss_pred HhhCCccchhhhhhhhhhhhhhhhhhhccCCCccC------CCCCc--ccChHHHHHHHHHhh
Q psy16493 51 RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIG------GSKPK--VATPAVVSKIEQYKR 105 (151)
Q Consensus 51 ~~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~IG------GSKPk--vatp~V~~kI~~yk~ 105 (151)
+.++++.||++.+.+ +.+-||++|.++..-|.|- .-+.+ ..|+.-.+.+++...
T Consensus 49 ~~~~t~~eLa~~l~~-~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~ 110 (143)
T 3oop_A 49 NEPISQKEIALWTKK-DTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETTELRD 110 (143)
T ss_dssp HSSEEHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHCC-CHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHHHHHHH
Confidence 457899999999985 9999999998876445441 11122 347776655555443
No 45
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=29.55 E-value=13 Score=25.77 Aligned_cols=37 Identities=11% Similarity=0.161 Sum_probs=28.7
Q ss_pred CCccchhhhhhhhhhhhhhhhhhhccCCCc---cCCCCCcc
Q psy16493 54 FRHYDIAQHVLHQQQGAVSKLLGTLRPPGL---IGGSKPKV 91 (151)
Q Consensus 54 vRpcdISrqL~vVSHGCVSKIL~r~r~pG~---IGGSKPkv 91 (151)
...-+|||+|.+ +--.|.++|.++..-|. +.|..|++
T Consensus 30 ~Ta~~IAkkLg~-sK~~vNr~LY~L~kkG~V~~~~~~PP~W 69 (75)
T 1sfu_A 30 TTAISLSNRLKI-NKKKINQQLYKLQKEDTVKMVPSNPPKW 69 (75)
T ss_dssp ECHHHHHHHTTC-CHHHHHHHHHHHHHTTSEEEECCSSCEE
T ss_pred hHHHHHHHHHCC-CHHHHHHHHHHHHHCCCEecCCCCCCCc
Confidence 566689999985 98899999988865454 36777774
No 46
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=29.51 E-value=10 Score=25.95 Aligned_cols=53 Identities=9% Similarity=0.054 Sum_probs=35.5
Q ss_pred HhhCCccchhhhhhhhhhhhhhhhhhhccCCCccC-----CC-CC--cccChHHHHHHHHHh
Q psy16493 51 RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIG-----GS-KP--KVATPAVVSKIEQYK 104 (151)
Q Consensus 51 ~~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~IG-----GS-KP--kvatp~V~~kI~~yk 104 (151)
+.++.+.||++.+.+ +.+-||++|.++..-|.|- .- +. -..|++-.+.+++..
T Consensus 54 ~~~~t~~ela~~l~~-~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 114 (150)
T 2rdp_A 54 EGDLTVGELSNKMYL-ACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERIIEEVI 114 (150)
T ss_dssp HCSBCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCC-CchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHHHHHH
Confidence 357899999999985 9999999998875444431 11 11 145777666555544
No 47
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=29.26 E-value=37 Score=27.04 Aligned_cols=73 Identities=18% Similarity=0.155 Sum_probs=48.6
Q ss_pred hhCCccchhhhhhhhhhhhhhhhhhhccCCCccCCCC-CcccChHHHHHHHHHhhhC---------------------CC
Q psy16493 52 LLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIGGSK-PKVATPAVVSKIEQYKREN---------------------PT 109 (151)
Q Consensus 52 ~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~IGGSK-Pkvatp~V~~kI~~yk~en---------------------P~ 109 (151)
..++-.|||+.|.+ |.+=|+..|.++..-|.|-=.+ .=.-|++=.+..++..+.+ |.
T Consensus 29 ~~V~~~~LA~~Lgv-S~~SV~~~lkkL~e~GLV~~~~~Gv~LTe~G~~~A~~i~~rhr~~~~l~~~~~~~~~~vv~~~~~ 107 (200)
T 2p8t_A 29 EPLGRKQISERLEL-GEGSVRTLLRKLSHLDIIRSKQRGHFLTLKGKEIRDKLLSMFSEPIGVSVDGYPGIAIVVKNPPE 107 (200)
T ss_dssp SCBCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEC--CEEECHHHHHHHHHHHTTBCCCEEEEETTEEEEEEEESSCCC
T ss_pred CCccHHHHHHHhCC-CHHHHHHHHHHHHHCCCEEEeCCCeEECHHHHHHHHHHHHHHHHhcCccccCCceEEEEecCCcc
Confidence 35777899999985 9999999999887555542222 1133665443333333322 44
Q ss_pred cchHHHHhhhhhcCCC
Q psy16493 110 IFAWEIRERLISEDVG 125 (151)
Q Consensus 110 iFaWEIRdrLi~~gvC 125 (151)
+=.-|+||.+++.|.|
T Consensus 108 ~~~i~lRD~~Ir~Ga~ 123 (200)
T 2p8t_A 108 FKSIELRDEAIKFDAK 123 (200)
T ss_dssp CCHHHHHHHHHHTTCS
T ss_pred cchHHHhHHHHHcCCc
Confidence 5567899999999988
No 48
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=29.23 E-value=10 Score=25.94 Aligned_cols=54 Identities=7% Similarity=0.097 Sum_probs=33.8
Q ss_pred HhhCCccchhhhhhhhhhhhhhhhhhhccCCCccCCC----CCc----ccChHHHHHHHHHhh
Q psy16493 51 RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIGGS----KPK----VATPAVVSKIEQYKR 105 (151)
Q Consensus 51 ~~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~IGGS----KPk----vatp~V~~kI~~yk~ 105 (151)
+.++++.||+..+.+ +.+-||++|.++..-|.|--. -.| ..|+.-.+.+++...
T Consensus 49 ~~~~t~~eLa~~l~~-~~~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~~ 110 (142)
T 3ech_A 49 QRGLNLQDLGRQMCR-DKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHLHAEL 110 (142)
T ss_dssp TTTCCHHHHHHHHC----CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHhCC-CHHHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHHHHHHH
Confidence 357899999999985 999999999987645555221 111 347776666655543
No 49
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=28.69 E-value=9.7 Score=26.08 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=26.0
Q ss_pred HhhCCccchhhhh-hhhhhhhhhhhhhhccCCCcc
Q psy16493 51 RLLFRHYDIAQHV-LHQQQGAVSKLLGTLRPPGLI 84 (151)
Q Consensus 51 ~~GvRpcdISrqL-~vVSHGCVSKIL~r~r~pG~I 84 (151)
+.+.+..||++.+ .+ +.+-||+.|.++..-|.|
T Consensus 33 ~~~~~~~eLa~~l~~i-s~~tvs~~L~~Le~~GlI 66 (112)
T 1z7u_A 33 QGTKRNGELMRALDGI-TQRVLTDRLREMEKDGLV 66 (112)
T ss_dssp HSCBCHHHHHHHSTTC-CHHHHHHHHHHHHHHTSE
T ss_pred hCCCCHHHHHHHhccC-CHHHHHHHHHHHHHCCCE
Confidence 3458899999999 75 999999999887543443
No 50
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=28.35 E-value=11 Score=25.54 Aligned_cols=51 Identities=25% Similarity=0.280 Sum_probs=33.6
Q ss_pred hhCCccchhhhhhhhhhhhhhhhhhhccCCCccC------CCCCc--ccChHHHHHHHHH
Q psy16493 52 LLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIG------GSKPK--VATPAVVSKIEQY 103 (151)
Q Consensus 52 ~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~IG------GSKPk--vatp~V~~kI~~y 103 (151)
.++.+.||+..+.+ +.+-||++|.++..-|.|- ..+.+ ..|+.-.+.+++.
T Consensus 51 ~~~t~~~la~~l~~-s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~ 109 (146)
T 2fbh_A 51 DSPTQRELAQSVGV-EGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIADI 109 (146)
T ss_dssp SCCBHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHHHH
T ss_pred CCCCHHHHHHHhCC-ChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHHHHH
Confidence 46889999999985 9999999998875333331 11111 3477665555544
No 51
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=28.34 E-value=17 Score=25.03 Aligned_cols=52 Identities=15% Similarity=0.121 Sum_probs=35.7
Q ss_pred hCCccchhhhhhhhhhhhhhhhhhhccCCCccCCC-----CCc---ccChHHHHHHHHHhh
Q psy16493 53 LFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIGGS-----KPK---VATPAVVSKIEQYKR 105 (151)
Q Consensus 53 GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~IGGS-----KPk---vatp~V~~kI~~yk~ 105 (151)
++++.||++.+.+ +.+-||++|.++..-|.|--. +.. ..|++-.+.+++...
T Consensus 54 ~~t~~eLa~~l~i-~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~ 113 (150)
T 3fm5_A 54 GVNQRGVAATMGL-DPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRDDAKA 113 (150)
T ss_dssp CCCSHHHHHHHTC-CHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCC-CHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHHHHHHH
Confidence 5799999999985 999999999998655655221 111 347776666655543
No 52
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=27.95 E-value=8.8 Score=26.08 Aligned_cols=52 Identities=17% Similarity=0.069 Sum_probs=35.1
Q ss_pred hhCCccchhhhhhhhhhhhhhhhhhhccCCCccC------CCCCc--ccChHHHHHHHHHh
Q psy16493 52 LLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIG------GSKPK--VATPAVVSKIEQYK 104 (151)
Q Consensus 52 ~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~IG------GSKPk--vatp~V~~kI~~yk 104 (151)
.++.+.||+..+.+ +.+-||++|.++..-|.|- .-+.+ ..|+.-.+.++++.
T Consensus 42 ~~~t~~~la~~l~~-s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 101 (144)
T 1lj9_A 42 PGIIQEKIAELIKV-DRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPIIV 101 (144)
T ss_dssp TTEEHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHCC-CHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHHHHHH
Confidence 46889999999985 9999999998875444431 11111 35777666555443
No 53
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=27.56 E-value=11 Score=25.64 Aligned_cols=53 Identities=13% Similarity=0.034 Sum_probs=35.3
Q ss_pred HhhCCccchhhhhhhhhhhhhhhhhhhccCCCccC------CCCCc--ccChHHHHHHHHHh
Q psy16493 51 RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIG------GSKPK--VATPAVVSKIEQYK 104 (151)
Q Consensus 51 ~~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~IG------GSKPk--vatp~V~~kI~~yk 104 (151)
..++++.|||+.+.+ +.+-||++|.++..-|.|- .-+.+ ..|+.-...++...
T Consensus 48 ~~~~~~~ela~~l~~-s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~~~ 108 (146)
T 2gxg_A 48 DGPKTMAYLANRYFV-TQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETFNKGI 108 (146)
T ss_dssp TSCBCHHHHHHHTTC-CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHhCC-CchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHHHHHH
Confidence 356888999999985 9999999998875444441 11111 34777655555443
No 54
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=27.20 E-value=11 Score=25.29 Aligned_cols=53 Identities=13% Similarity=0.107 Sum_probs=35.9
Q ss_pred HhhCCccchhhhhhhhhhhhhhhhhhhccCCCccCC-----CCC-c--ccChHHHHHHHHHh
Q psy16493 51 RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIGG-----SKP-K--VATPAVVSKIEQYK 104 (151)
Q Consensus 51 ~~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~IGG-----SKP-k--vatp~V~~kI~~yk 104 (151)
+.++.+.||++.+.+ +.+-||++|.++..-|.|-- -+. + ..|++-.+.+++..
T Consensus 50 ~~~~t~~ela~~l~~-~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 110 (140)
T 2nnn_A 50 TGPCPQNQLGRLTAM-DAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAELEAGL 110 (140)
T ss_dssp HSSBCHHHHHHHTTC-CHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCC-CHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHHHHHH
Confidence 357899999999985 99999999988764454421 111 1 34777666555543
No 55
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=26.59 E-value=8.6 Score=26.60 Aligned_cols=30 Identities=17% Similarity=0.122 Sum_probs=25.2
Q ss_pred hCCccchhhhhhhhhhhhhhhhhhhccCCCc
Q psy16493 53 LFRHYDIAQHVLHQQQGAVSKLLGTLRPPGL 83 (151)
Q Consensus 53 GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~ 83 (151)
|+...||+.++.+ +++.|++||.++..-|.
T Consensus 36 gi~qkeLa~~~~l-~~~tvt~iLk~LE~kgl 65 (91)
T 2dk5_A 36 GIWSRDVRYKSNL-PLTEINKILKNLESKKL 65 (91)
T ss_dssp CEEHHHHHHHTTC-CHHHHHHHHHHHHHTTS
T ss_pred CcCHHHHHHHHCC-CHHHHHHHHHHHHHCCC
Confidence 7999999999985 99999999988753333
No 56
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=26.54 E-value=11 Score=24.76 Aligned_cols=49 Identities=14% Similarity=-0.039 Sum_probs=35.2
Q ss_pred hCCccchhhhhhhhhhhh-hhhhhhhccCCCccCCCC----Cc---ccChHHHHHHHHH
Q psy16493 53 LFRHYDIAQHVLHQQQGA-VSKLLGTLRPPGLIGGSK----PK---VATPAVVSKIEQY 103 (151)
Q Consensus 53 GvRpcdISrqL~vVSHGC-VSKIL~r~r~pG~IGGSK----Pk---vatp~V~~kI~~y 103 (151)
++++.|||+.+.+ +.+- ||++|.++..-|.|- .. .. ..|+.-.+.+++.
T Consensus 30 ~~t~~eLa~~l~i-s~~t~vs~~l~~Le~~Glv~-~~~~drR~~~~~LT~~G~~~~~~~ 86 (95)
T 2pg4_A 30 EPSLAEIVKASGV-SEKTFFMGLKDRLIRAGLVK-EETLSYRVKTLKLTEKGRRLAECL 86 (95)
T ss_dssp CCCHHHHHHHHCC-CHHHHHTTHHHHHHHTTSEE-EEEEETTEEEEEECHHHHHHHHHH
T ss_pred CCCHHHHHHHHCC-CchHHHHHHHHHHHHCCCee-cCCCCCCeEEEEECHhHHHHHHHH
Confidence 5899999999985 9999 999999987667665 21 11 3377655555444
No 57
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=25.54 E-value=14 Score=25.62 Aligned_cols=32 Identities=22% Similarity=0.245 Sum_probs=26.0
Q ss_pred hhCCccchhhhhhhhhhhhhhhhhhhccCCCcc
Q psy16493 52 LLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLI 84 (151)
Q Consensus 52 ~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~I 84 (151)
.+++..|||+.|.+ |.+-||++|.++..-|.|
T Consensus 21 ~~~~~~ela~~l~v-s~~tvs~~l~~Le~~Glv 52 (142)
T 1on2_A 21 GYARVSDIAEALAV-HPSSVTKMVQKLDKDEYL 52 (142)
T ss_dssp SSCCHHHHHHHHTS-CHHHHHHHHHHHHHTTSE
T ss_pred CCCCHHHHHHHhCC-CHHHHHHHHHHHHHCCCE
Confidence 46788999999985 999999999887644544
No 58
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=25.35 E-value=13 Score=25.35 Aligned_cols=53 Identities=15% Similarity=-0.051 Sum_probs=36.5
Q ss_pred hhCCccchhhhhhhhhhhhhhhhhhhccCCCccCCC--------CCcccChHHHHHHHHHhh
Q psy16493 52 LLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIGGS--------KPKVATPAVVSKIEQYKR 105 (151)
Q Consensus 52 ~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~IGGS--------KPkvatp~V~~kI~~yk~ 105 (151)
.++.+.||++.+.+ +.+-||++|.++..-|.|--. +.-..|++-.+.+++...
T Consensus 53 ~~~t~~ela~~l~~-~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~~~~~~ 113 (148)
T 3nrv_A 53 SDCSVQKISDILGL-DKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASD 113 (148)
T ss_dssp SSBCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCC-CHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHHHHHHH
Confidence 46889999999985 999999999887644554211 112457776666655544
No 59
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=25.13 E-value=13 Score=25.32 Aligned_cols=53 Identities=19% Similarity=0.070 Sum_probs=35.8
Q ss_pred HhhCCccchhhhhhhhhhhhhhhhhhhccCCCccC-----CCCCc---ccChHHHHHHHHHh
Q psy16493 51 RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIG-----GSKPK---VATPAVVSKIEQYK 104 (151)
Q Consensus 51 ~~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~IG-----GSKPk---vatp~V~~kI~~yk 104 (151)
+.++++.|||..+.+ +.+-||++|.++..-|.|- .-+.. ..|++-.+.+++..
T Consensus 43 ~~~~t~~eLa~~l~~-~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~ 103 (145)
T 3g3z_A 43 EGSRTQKHIGEKWSL-PKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAAPLT 103 (145)
T ss_dssp HCSBCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCC-CHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHHHHHH
Confidence 456899999999985 9999999998876445542 11122 34777665554443
No 60
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=25.05 E-value=16 Score=26.87 Aligned_cols=52 Identities=13% Similarity=0.108 Sum_probs=35.3
Q ss_pred hhCCccchhhhhhhhhhhhhhhhhhhccCCCccC-----CCCCc---ccChHHHHHHHHHh
Q psy16493 52 LLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIG-----GSKPK---VATPAVVSKIEQYK 104 (151)
Q Consensus 52 ~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~IG-----GSKPk---vatp~V~~kI~~yk 104 (151)
.++++.+||..+.+ +.+-||++|.++..-|.|- .-+.. ..|+.-.+.+++..
T Consensus 56 ~~~t~~eLa~~l~i-s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~ 115 (189)
T 3nqo_A 56 EETTLNNIARKMGT-SKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMVTCS 115 (189)
T ss_dssp GGCCHHHHHHHHTS-CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCC-CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHHHH
Confidence 37999999999985 9999999999876445541 12222 34776555554443
No 61
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=24.94 E-value=10 Score=26.47 Aligned_cols=54 Identities=9% Similarity=0.064 Sum_probs=35.8
Q ss_pred HhhCCccchhhhhhhhhhhhhhhhhhhccCCCccC-----CCCCc---ccChHHHHHHHHHhh
Q psy16493 51 RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIG-----GSKPK---VATPAVVSKIEQYKR 105 (151)
Q Consensus 51 ~~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~IG-----GSKPk---vatp~V~~kI~~yk~ 105 (151)
+.|+++.|||+.+.+ +.+-||+++.++..-|.|- .-+.. ..|+.-.+.+++...
T Consensus 62 ~~~~t~~eLa~~l~~-~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~~ 123 (159)
T 3s2w_A 62 EDGINQESLSDYLKI-DKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLEPDMKK 123 (159)
T ss_dssp SCSEEHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCC-CHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHHHHHHH
Confidence 357889999999985 9999999998876445441 11111 347776665555443
No 62
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=24.94 E-value=14 Score=25.09 Aligned_cols=53 Identities=19% Similarity=0.140 Sum_probs=35.4
Q ss_pred HhhCCccchhhhhhhhhhhhhhhhhhhccCCCccCCC--------CCcccChHHHHHHHHHh
Q psy16493 51 RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIGGS--------KPKVATPAVVSKIEQYK 104 (151)
Q Consensus 51 ~~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~IGGS--------KPkvatp~V~~kI~~yk 104 (151)
..|+++.|||+.+.+ +.+-||++|.++..-|.|--. +--..|+.-.+.+....
T Consensus 49 ~~~~t~~eLa~~l~~-s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~~~~~ 109 (146)
T 3tgn_A 49 EESLTNSELARRLNV-SQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIAEEHH 109 (146)
T ss_dssp TCCCCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEC----------CCEECGGGHHHHHHHH
T ss_pred hCCCCHHHHHHHHCC-CHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHHHHHH
Confidence 345999999999985 999999999987644554221 11134776555555543
No 63
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=24.63 E-value=10 Score=26.04 Aligned_cols=53 Identities=11% Similarity=0.079 Sum_probs=34.5
Q ss_pred HhhCCccchhhhhhhhhhhhhhhhhhhccCCCccC-----CCCC-c--ccChHHHHHHHHHh
Q psy16493 51 RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIG-----GSKP-K--VATPAVVSKIEQYK 104 (151)
Q Consensus 51 ~~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~IG-----GSKP-k--vatp~V~~kI~~yk 104 (151)
+.++++.||++.+.+ +.+-||+++.++..-|.|- .-+. + ..|++-.+.+++..
T Consensus 48 ~~~~t~~eLa~~l~~-~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~ 108 (140)
T 3hsr_A 48 DEKLNIKKLGERVFL-DSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSPLA 108 (140)
T ss_dssp TCEEEHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTHHHHH
T ss_pred cCCcCHHHHHHHHCC-ChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHHHHHH
Confidence 357889999999985 9999999998875444441 1111 1 34777655555443
No 64
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=24.07 E-value=40 Score=25.91 Aligned_cols=27 Identities=15% Similarity=0.233 Sum_probs=22.3
Q ss_pred CCC-CcchhhHHHH-----HhhCCccchhhhhh
Q psy16493 38 SQQ-PLASLVNQQQ-----RLLFRHYDIAQHVL 64 (151)
Q Consensus 38 nGR-PLp~~~R~ki-----~~GvRpcdISrqL~ 64 (151)
||+ ..+.++|+|+ +.|.+|...+|.|+
T Consensus 24 n~~~~vs~~tr~rV~~aa~~lgY~pn~~ar~l~ 56 (332)
T 2hsg_A 24 NGNPNVKPSTRKKVLETIERLGYRPNAVARGLA 56 (332)
T ss_dssp TTCTTSCHHHHHHHHHHHHHHTCCSCHHHHHHT
T ss_pred cCCCCCCHHHHHHHHHHHHHHCCCcCHHHHHHH
Confidence 444 3889999998 68999999999885
No 65
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=24.05 E-value=11 Score=24.99 Aligned_cols=30 Identities=13% Similarity=0.089 Sum_probs=26.6
Q ss_pred CCccchhhhhhhhhhhhhhhhhhhccCCCcc
Q psy16493 54 FRHYDIAQHVLHQQQGAVSKLLGTLRPPGLI 84 (151)
Q Consensus 54 vRpcdISrqL~vVSHGCVSKIL~r~r~pG~I 84 (151)
+++.|||+.+.+ +.+-||++|.++..-|.|
T Consensus 31 ~t~~eLa~~l~i-~~~tvs~~l~~Le~~Glv 60 (95)
T 2qvo_A 31 VYIQYIASKVNS-PHSYVWLIIKKFEEAKMV 60 (95)
T ss_dssp EEHHHHHHHSSS-CHHHHHHHHHHHHHTTSE
T ss_pred cCHHHHHHHHCc-CHHHHHHHHHHHHHCcCc
Confidence 788899999985 999999999998767777
No 66
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=23.95 E-value=11 Score=25.49 Aligned_cols=52 Identities=23% Similarity=0.241 Sum_probs=34.7
Q ss_pred hCCccchhhhhhhhhhhhhhhhhhhccCCCccC-----CCCCc---ccChHHHHHHHHHhh
Q psy16493 53 LFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIG-----GSKPK---VATPAVVSKIEQYKR 105 (151)
Q Consensus 53 GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~IG-----GSKPk---vatp~V~~kI~~yk~ 105 (151)
++++.|||+.+.+ +.+-||+++.++..-|.|- .-+.. ..|+.-.+.+++...
T Consensus 47 ~~t~~ela~~l~~-~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~~~~~~ 106 (139)
T 3eco_A 47 GLTQNDIAKALQR-TGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAFTS 106 (139)
T ss_dssp CEEHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHHHHHHH
T ss_pred CcCHHHHHHHhCC-CcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHHHHHHH
Confidence 7888999999985 9999999998875444441 11111 347776665555443
No 67
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=23.94 E-value=15 Score=24.70 Aligned_cols=33 Identities=18% Similarity=0.306 Sum_probs=26.6
Q ss_pred HhhCCccchhhhhhhhhhhhhhhhhhhccCCCcc
Q psy16493 51 RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLI 84 (151)
Q Consensus 51 ~~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~I 84 (151)
+.++.+.|||+.+.+ +.+-||++|.++..-|.|
T Consensus 43 ~~~~~~~ela~~l~i-s~~~vs~~l~~L~~~gli 75 (142)
T 3bdd_A 43 DAPLHQLALQERLQI-DRAAVTRHLKLLEESGYI 75 (142)
T ss_dssp HCSBCHHHHHHHHTC-CHHHHHHHHHHHHHTTSE
T ss_pred CCCCCHHHHHHHHCC-CHHHHHHHHHHHHHCCCE
Confidence 356899999999985 999999999887544444
No 68
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=23.84 E-value=17 Score=29.05 Aligned_cols=37 Identities=19% Similarity=0.128 Sum_probs=28.1
Q ss_pred cchhhHHHH-----HhhCCccchhhhhhhhhhhhhhhhhhhcc
Q psy16493 42 LASLVNQQQ-----RLLFRHYDIAQHVLHQQQGAVSKLLGTLR 79 (151)
Q Consensus 42 Lp~~~R~ki-----~~GvRpcdISrqL~vVSHGCVSKIL~r~r 79 (151)
|.+.+|.+| +.....++|++.+.+ |.+-||+.|..+.
T Consensus 9 L~~~~R~~IL~~L~~g~~s~~ELa~~lgl-S~stVs~hL~~Le 50 (232)
T 2qlz_A 9 LGNKVRRDLLSHLTCMECYFSLLSSKVSV-SSTAVAKHLKIME 50 (232)
T ss_dssp HTSHHHHHHHHHHTTTTTCSSSSCTTCCC-CHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhCCCCHHHHHHHHCc-CHHHHHHHHHHHH
Confidence 345667776 334788899999975 9999999997654
No 69
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=23.67 E-value=9.8 Score=25.77 Aligned_cols=32 Identities=19% Similarity=0.181 Sum_probs=25.5
Q ss_pred hhCCccchhhhhh-hhhhhhhhhhhhhccCCCcc
Q psy16493 52 LLFRHYDIAQHVL-HQQQGAVSKLLGTLRPPGLI 84 (151)
Q Consensus 52 ~GvRpcdISrqL~-vVSHGCVSKIL~r~r~pG~I 84 (151)
.+.+..||++.+. + +.+.||+.|.++..-|.|
T Consensus 37 ~~~~~~eL~~~l~gi-s~~~ls~~L~~Le~~GlV 69 (107)
T 2fsw_A 37 RIIRYGELKRAIPGI-SEKMLIDELKFLCGKGLI 69 (107)
T ss_dssp SCEEHHHHHHHSTTC-CHHHHHHHHHHHHHTTSE
T ss_pred CCcCHHHHHHHcccC-CHHHHHHHHHHHHHCCCE
Confidence 3478899999995 5 999999999887655554
No 70
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=23.64 E-value=1e+02 Score=19.59 Aligned_cols=46 Identities=20% Similarity=0.203 Sum_probs=32.8
Q ss_pred HhhCCccchhhhhhhhhhhhhhhhhhhccCCCccCCCCCcccChHHHHHHHHHhhhCC
Q psy16493 51 RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIGGSKPKVATPAVVSKIEQYKRENP 108 (151)
Q Consensus 51 ~~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~IGGSKPkvatp~V~~kI~~yk~enP 108 (151)
..|+...++|+.+-+ |..-||+++.--+ ..+.+...+|.++-.-.+
T Consensus 19 ~~gltq~~lA~~~gi-s~~~is~~e~g~~-----------~~~~~~~~~i~~~l~v~~ 64 (94)
T 2ict_A 19 ELNVSLREFARAMEI-APSTASRLLTGKA-----------ALTPEMAIKLSVVIGSSP 64 (94)
T ss_dssp HHTCCHHHHHHHHTC-CHHHHHHHHHTSS-----------CCCHHHHHHHHHHTCSCH
T ss_pred HcCCCHHHHHHHhCC-CHHHHHHHHcCCC-----------CCCHHHHHHHHHHHCcCH
Confidence 689999999999985 9999999986222 224555666666554444
No 71
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=23.62 E-value=11 Score=25.43 Aligned_cols=54 Identities=11% Similarity=0.114 Sum_probs=36.1
Q ss_pred HhhCCccchhhhhhhhhhhhhhhhhhhccCCCccCCC-----CCc---ccChHHHHHHHHHhh
Q psy16493 51 RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIGGS-----KPK---VATPAVVSKIEQYKR 105 (151)
Q Consensus 51 ~~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~IGGS-----KPk---vatp~V~~kI~~yk~ 105 (151)
+.++.+.||++.+.+ +.+-||++|.++..-|.|--. +.. ..|+.-.+.+++...
T Consensus 48 ~~~~t~~ela~~l~~-s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~ 109 (142)
T 2fbi_A 48 QGEMESYQLANQACI-LRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFVSMSG 109 (142)
T ss_dssp HCSEEHHHHHHHTTC-CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCC-CHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHHHHHHH
Confidence 356889999999985 999999999987644544211 111 347776665555443
No 72
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=23.59 E-value=43 Score=22.79 Aligned_cols=63 Identities=11% Similarity=0.039 Sum_probs=40.5
Q ss_pred CCcchhhHHHH-----HhhCCcc-chhhhhhhhhhhhhhhhhhhcc---C----CCccCCC---CCcccChHHHHHHHHH
Q psy16493 40 QPLASLVNQQQ-----RLLFRHY-DIAQHVLHQQQGAVSKLLGTLR---P----PGLIGGS---KPKVATPAVVSKIEQY 103 (151)
Q Consensus 40 RPLp~~~R~ki-----~~GvRpc-dISrqL~vVSHGCVSKIL~r~r---~----pG~IGGS---KPkvatp~V~~kI~~y 103 (151)
+.++.+.+.+| ..|.... +||+++-| +...|++++.... . .+.-... ..++..|++++.+.+|
T Consensus 6 ~~~t~e~K~~iv~~~~~~g~~~~~~~A~~~gv-s~stl~~~~~~~~~~~~~~~~~~~~~~~~kr~r~~~~~~~E~~L~~W 84 (131)
T 1hlv_A 6 RQLTFREKSRIIQEVEENPDLRKGEIARRFNI-PPSTLSTILKNKRAILASERKYGVASTCRKTNKLSPYDKLEGLLIAW 84 (131)
T ss_dssp CCCCHHHHHHHHHHHHHCTTSCHHHHHHHHTC-CHHHHHHHHHTHHHHHHHHHHHGGGGGTCCCCCCCTTHHHHHHHHHH
T ss_pred eeCCHHHHHHHHHHHHHCCCCcHHHHHHHhCC-CHHHHHHHHhchhhhcchhhhccccchhhcccCCCCCHHHHHHHHHH
Confidence 56888888776 2465555 99999985 9999999996543 1 1111101 1234678887776655
No 73
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=23.50 E-value=11 Score=24.25 Aligned_cols=30 Identities=17% Similarity=0.063 Sum_probs=23.2
Q ss_pred hCCccchhhhhhhhhhhhhhhhhhhccCCCc
Q psy16493 53 LFRHYDIAQHVLHQQQGAVSKLLGTLRPPGL 83 (151)
Q Consensus 53 GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~ 83 (151)
.+...|||..+.+ |..-|++.|..+..-|.
T Consensus 14 ~~s~~eLa~~lgv-s~~tv~r~L~~L~~~Gl 43 (81)
T 2htj_A 14 GGKTAEIAEALAV-TDYQARYYLLLLEKAGM 43 (81)
T ss_dssp CCCHHHHHHHHTS-CHHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHCc-CHHHHHHHHHHHHHCCC
Confidence 4778899999985 99999999977653333
No 74
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=23.48 E-value=15 Score=24.54 Aligned_cols=52 Identities=15% Similarity=0.151 Sum_probs=34.9
Q ss_pred hhCCccchhhhhhhhhhhhhhhhhhhccCCCccCC------CCCc--ccChHHHHHHHHHh
Q psy16493 52 LLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIGG------SKPK--VATPAVVSKIEQYK 104 (151)
Q Consensus 52 ~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~IGG------SKPk--vatp~V~~kI~~yk 104 (151)
.++.+.|||..+.+ +.+-||++|.++..-|.|-- -+.+ ..|+.-.+.+++..
T Consensus 42 ~~~~~~ela~~l~~-s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~~~~~ 101 (138)
T 3bpv_A 42 PGIKQDELATFFHV-DKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIPLIL 101 (138)
T ss_dssp TTCBHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTHHHHH
T ss_pred CCCCHHHHHHHHCC-CHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHHHHHH
Confidence 56889999999985 99999999988764444421 1111 34776555554443
No 75
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=23.42 E-value=16 Score=25.33 Aligned_cols=54 Identities=17% Similarity=0.123 Sum_probs=35.9
Q ss_pred HhhCCccchhhhhhhhhhhhhhhhhhhccCCCccCCC-----C-Cc--ccChHHHHHHHHHhh
Q psy16493 51 RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIGGS-----K-PK--VATPAVVSKIEQYKR 105 (151)
Q Consensus 51 ~~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~IGGS-----K-Pk--vatp~V~~kI~~yk~ 105 (151)
+.++++.||++.+.+ +.+-||++|.++..-|.|--. + .+ ..|+.-.+.+++...
T Consensus 61 ~~~~t~~ela~~l~i-s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~ 122 (162)
T 2fa5_A 61 YPGSSASEVSDRTAM-DKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVYETVAP 122 (162)
T ss_dssp STTCCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCC-CHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHHHHHHH
Confidence 357899999999985 999999999887644544211 1 11 347776665555443
No 76
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=22.89 E-value=12 Score=25.54 Aligned_cols=52 Identities=15% Similarity=0.179 Sum_probs=34.6
Q ss_pred hhCCccchhhhhhhhhhhhhhhhhhhccCCCccC------CCCCc--ccChHHHHHHHHHh
Q psy16493 52 LLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIG------GSKPK--VATPAVVSKIEQYK 104 (151)
Q Consensus 52 ~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~IG------GSKPk--vatp~V~~kI~~yk 104 (151)
.++++.||+..+.+ +.+-||++|.++..-|.|- .-+-+ ..|+.-.+.+++..
T Consensus 53 ~~~t~~ela~~l~~-~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 112 (152)
T 3bj6_A 53 PGATAPQLGAALQM-KRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAIITAIR 112 (152)
T ss_dssp TTEEHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCC-CHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHHHHHH
Confidence 46889999999985 9999999998875334431 11122 34777655555443
No 77
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=22.87 E-value=15 Score=25.42 Aligned_cols=53 Identities=13% Similarity=0.122 Sum_probs=35.4
Q ss_pred hhCCccchhhhhhhhhhhhhhhhhhhccCCCccC------CCCCc--ccChHHHHHHHHHhh
Q psy16493 52 LLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIG------GSKPK--VATPAVVSKIEQYKR 105 (151)
Q Consensus 52 ~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~IG------GSKPk--vatp~V~~kI~~yk~ 105 (151)
.++.+.||+..+.+ +.+-||++|.++..-|.|- .-+.+ ..|+.-.+.+++...
T Consensus 56 ~~~t~~ela~~l~i-~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~ 116 (155)
T 3cdh_A 56 DAMMITRLAKLSLM-EQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALAESLVA 116 (155)
T ss_dssp SCBCHHHHHHHTTC-CHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCC-CHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHHHHHHH
Confidence 46889999999985 9999999998875444441 11111 357776666655443
No 78
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=22.83 E-value=13 Score=25.67 Aligned_cols=53 Identities=8% Similarity=-0.006 Sum_probs=36.2
Q ss_pred hhCCccchhhhhhhhhhhhhhhhhhhccCCCccCC-------CCCc---ccChHHHHHHHHHhh
Q psy16493 52 LLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIGG-------SKPK---VATPAVVSKIEQYKR 105 (151)
Q Consensus 52 ~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~IGG-------SKPk---vatp~V~~kI~~yk~ 105 (151)
.++++.||++.+.+ +.+-||++|.++..-|.|-= .+.. ..|+.-.+.+++...
T Consensus 54 ~~~t~~eLa~~l~~-~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~~~~~~ 116 (154)
T 2qww_A 54 PGISVADLTKRLII-TGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLSKRSTA 116 (154)
T ss_dssp TTEEHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHCC-CHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHHHHHHh
Confidence 46889999999985 99999999988654444321 1221 458877666655543
No 79
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=22.71 E-value=14 Score=24.98 Aligned_cols=31 Identities=19% Similarity=0.234 Sum_probs=24.3
Q ss_pred hCCccchhhhh-hhhhhhhhhhhhhhccCCCcc
Q psy16493 53 LFRHYDIAQHV-LHQQQGAVSKLLGTLRPPGLI 84 (151)
Q Consensus 53 GvRpcdISrqL-~vVSHGCVSKIL~r~r~pG~I 84 (151)
+.+.+||++.+ .+ |.+-+|+.|.++..-|.|
T Consensus 27 ~~~~~eLa~~l~~i-s~~tls~~L~~Le~~GlI 58 (107)
T 2hzt_A 27 KKRTSELKRLMPNI-TQKMLTQQLRELEADGVI 58 (107)
T ss_dssp CBCHHHHHHHCTTS-CHHHHHHHHHHHHHTTSE
T ss_pred CCCHHHHHHHhcCC-CHHHHHHHHHHHHHCCCE
Confidence 47889999988 74 999999999887644444
No 80
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=22.48 E-value=11 Score=26.46 Aligned_cols=54 Identities=17% Similarity=0.111 Sum_probs=36.8
Q ss_pred HhhCCccchhhhhhhhhhhhhhhhhhhccCCCccCC-----CCC-c--ccChHHHHHHHHHhh
Q psy16493 51 RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIGG-----SKP-K--VATPAVVSKIEQYKR 105 (151)
Q Consensus 51 ~~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~IGG-----SKP-k--vatp~V~~kI~~yk~ 105 (151)
+.++++.||++.+.+ +.+-||++|.++..-|.|-= -+. + ..|++-.+.+++...
T Consensus 65 ~~~~t~~eLa~~l~~-~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~~ 126 (161)
T 3e6m_A 65 YGELTVGQLATLGVM-EQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAEISP 126 (161)
T ss_dssp HSEEEHHHHHHHTTC-CHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCC-CHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHHHHHHH
Confidence 457899999999985 99999999998764455421 111 1 347776665555544
No 81
>4a1k_A Putative L, D-transpeptidase YKUD; transferase, peptidoglycan synthesis; HET: CME; 1.75A {Bacillus subtilis} PDB: 4a1j_A 4a1i_A* 1y7m_A 3zqd_A 4a52_A*
Probab=22.15 E-value=14 Score=27.72 Aligned_cols=6 Identities=17% Similarity=0.578 Sum_probs=5.3
Q ss_pred hhhhhh
Q psy16493 66 QQQGAV 71 (151)
Q Consensus 66 VSHGCV 71 (151)
+|||||
T Consensus 136 ~ShGCI 141 (165)
T 4a1k_A 136 VSKGCI 141 (165)
T ss_dssp EESSSE
T ss_pred ccCCCc
Confidence 499998
No 82
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=22.14 E-value=15 Score=24.90 Aligned_cols=53 Identities=13% Similarity=0.075 Sum_probs=35.3
Q ss_pred hhCCccchhhhhhhhhhhhhhhhhhhccCCCccC------CCCCc--ccChHHHHHHHHHhh
Q psy16493 52 LLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIG------GSKPK--VATPAVVSKIEQYKR 105 (151)
Q Consensus 52 ~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~IG------GSKPk--vatp~V~~kI~~yk~ 105 (151)
.++++.+|+..+.+ +.+-||++|.++..-|.|- .-+.+ ..|+.-.+.+++...
T Consensus 49 ~~~~~~~la~~l~i-~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~ 109 (147)
T 2hr3_A 49 GDVTPSELAAAERM-RSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLYGNRA 109 (147)
T ss_dssp SCBCHHHHHHHTTC-CHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCC-ChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHHHHHHH
Confidence 36889999999985 9999999998875444441 11112 457776666655543
No 83
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=21.90 E-value=29 Score=22.68 Aligned_cols=37 Identities=16% Similarity=0.012 Sum_probs=29.1
Q ss_pred cchhhHHHH----HhhCCccchhhhhhhhhhhhhhhhhhhcc
Q psy16493 42 LASLVNQQQ----RLLFRHYDIAQHVLHQQQGAVSKLLGTLR 79 (151)
Q Consensus 42 Lp~~~R~ki----~~GvRpcdISrqL~vVSHGCVSKIL~r~r 79 (151)
||...|+=+ ..|..--+||..|.+ |.+-|.+.+.|.+
T Consensus 38 L~~~~r~vl~l~~~~g~s~~eIA~~lgi-s~~tV~~~l~ra~ 78 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRGWSTAQIATDLGI-AEGTVKSRLHYAV 78 (92)
T ss_dssp SCHHHHHHHHHHHTSCCCHHHHHHHHTS-CHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHCc-CHHHHHHHHHHHH
Confidence 666655544 469999999999985 9999999887654
No 84
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=21.72 E-value=24 Score=25.02 Aligned_cols=38 Identities=8% Similarity=-0.038 Sum_probs=24.6
Q ss_pred ccccCCCCcchhhHHHH---------H---hhCCccchhhhhhhhhhhhhh
Q psy16493 34 ALAASQQPLASLVNQQQ---------R---LLFRHYDIAQHVLHQQQGAVS 72 (151)
Q Consensus 34 g~f~nGRPLp~~~R~ki---------~---~GvRpcdISrqL~vVSHGCVS 72 (151)
|+.++|++-....|++| + .++.-.||++..-+ |.|-+-
T Consensus 1 ~~~~~~~~r~~~~r~~Il~aA~~lf~~~G~~~ts~~~IA~~aGv-sk~tlY 50 (211)
T 3bhq_A 1 GMKIDGETRSARKDREIIQAATAAFISKGYDGTSMEEIATKAGA-SKQTVY 50 (211)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHCSTTCCHHHHHHHHTC-CHHHHH
T ss_pred CCCcccCCccHhHHHHHHHHHHHHHHHhCcccCCHHHHHHHhCC-CHHHHH
Confidence 67889999999999998 2 35777899998874 766553
No 85
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=21.44 E-value=17 Score=24.39 Aligned_cols=31 Identities=13% Similarity=0.147 Sum_probs=25.3
Q ss_pred hCCccchhhhhhhhhhhhhhhhhhhccCCCcc
Q psy16493 53 LFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLI 84 (151)
Q Consensus 53 GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~I 84 (151)
++.+.+|++.+.+ +.+-||++|.++..-|.|
T Consensus 50 ~~~~~ela~~l~~-~~~tvs~~l~~Le~~Gli 80 (141)
T 3bro_A 50 EVLQRDLESEFSI-KSSTATVLLQRMEIKKLL 80 (141)
T ss_dssp CCBHHHHHHHHTC-CHHHHHHHHHHHHHTTSE
T ss_pred CcCHHHHHHHHCC-CcchHHHHHHHHHHCCCE
Confidence 5899999999985 999999999887543443
No 86
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=21.18 E-value=19 Score=25.60 Aligned_cols=32 Identities=22% Similarity=0.252 Sum_probs=25.6
Q ss_pred hhCCccchhhhhhhhhhhhhhhhhhhccCCCcc
Q psy16493 52 LLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLI 84 (151)
Q Consensus 52 ~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~I 84 (151)
.+..+.|||+.+.+ +.+-||+++.++..-|.|
T Consensus 45 ~~~~~~eLa~~l~~-~~~tvs~~v~~Le~~GlV 76 (151)
T 4aik_A 45 PEQSQIQLAKAIGI-EQPSLVRTLDQLEEKGLI 76 (151)
T ss_dssp TTSCHHHHHHHHTS-CHHHHHHHHHHHHHTTSE
T ss_pred CCCcHHHHHHHHCc-CHHHHHHHHHHHHhCCCe
Confidence 35777899999985 999999999987644544
No 87
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=20.95 E-value=13 Score=25.65 Aligned_cols=52 Identities=19% Similarity=0.160 Sum_probs=35.2
Q ss_pred hhCCccchhhhhhhhhhhhhhhhhhhccCCCccCC-----CCCc---ccChHHHHHHHHHh
Q psy16493 52 LLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIGG-----SKPK---VATPAVVSKIEQYK 104 (151)
Q Consensus 52 ~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~IGG-----SKPk---vatp~V~~kI~~yk 104 (151)
.++++.|||..+.+ +.+-||++|.++..-|.|-= .+.. ..|++-.+.+++..
T Consensus 52 ~~~t~~eLa~~l~~-~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~~~~~ 111 (127)
T 2frh_A 52 KEYYLKDIINHLNY-KQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESLL 111 (127)
T ss_dssp SEEEHHHHHHHSSS-HHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCC-CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHH
Confidence 56889999999985 99999999988754444421 1111 34777655555443
No 88
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=20.75 E-value=42 Score=26.00 Aligned_cols=25 Identities=12% Similarity=0.078 Sum_probs=21.4
Q ss_pred CcchhhHHHH-----HhhCCccchhhhhhh
Q psy16493 41 PLASLVNQQQ-----RLLFRHYDIAQHVLH 65 (151)
Q Consensus 41 PLp~~~R~ki-----~~GvRpcdISrqL~v 65 (151)
..+.++|+|| +.|.+|...+|.|+.
T Consensus 26 ~vs~~tr~rV~~~a~~lgY~pn~~ar~l~~ 55 (340)
T 1qpz_A 26 FVAEETRNAVWAAIKELHYSPSAVARSLKV 55 (340)
T ss_dssp CCCHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCCHHHHhhcc
Confidence 4889999998 589999999998863
No 89
>3m8j_A FOCB protein; all-alpha, helix-turn-helix, transcription; 1.40A {Escherichia coli}
Probab=20.71 E-value=1.1e+02 Score=22.58 Aligned_cols=67 Identities=10% Similarity=0.115 Sum_probs=48.4
Q ss_pred cCcchhHHHHhhhhhhccccchhhhhcccccCCCCcchhhHHHH--HhhCCccchhhhhhhhh--hhhhhhhhhhcc
Q psy16493 7 DFPEEQYWILRHLTLFNKLIGSLRELYALAASQQPLASLVNQQQ--RLLFRHYDIAQHVLHQQ--QGAVSKLLGTLR 79 (151)
Q Consensus 7 ~~~~~~~~i~~~~~~~~~~~~~vNqLGg~f~nGRPLp~~~R~ki--~~GvRpcdISrqL~vVS--HGCVSKIL~r~r 79 (151)
.+++++||++-.++... ...-++.|---||.|.+ |+.+ +.||.+...|+.|.... |.-|.+|+.=|.
T Consensus 29 ~vsee~F~LLlelS~Ir-SekII~ALrdyLV~G~s-----rkeaCe~~gV~~syfS~~L~rL~~v~~~V~~l~~fY~ 99 (111)
T 3m8j_A 29 SMSEEQFFLLIGISSIH-SDRVILAMKDYLVSGHS-----RKDVCEKYQMNNGYFSTTLGRLTRLNVLVARLAPYYT 99 (111)
T ss_dssp CSCHHHHHHHHHHSCCC-CHHHHHHHHHHHTTCCC-----HHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHGGGGS
T ss_pred CCCHHHHHHHHHHCCCC-CHHHHHHHHHHHHcCCc-----HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 57899999987664432 33567888899999998 3334 78999999999876533 556666665554
No 90
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=20.67 E-value=11 Score=26.25 Aligned_cols=52 Identities=13% Similarity=0.116 Sum_probs=34.1
Q ss_pred HhhCCccchhhhhhhhhhhhhhhhhhhccCCCccC------CCCCc--ccChHHHHHHHHH
Q psy16493 51 RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIG------GSKPK--VATPAVVSKIEQY 103 (151)
Q Consensus 51 ~~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~IG------GSKPk--vatp~V~~kI~~y 103 (151)
+.++++.||++.+.+ +.+-||++|.++..-|.|- .-+-+ ..|++-.+.+++.
T Consensus 53 ~~~~~~~eLa~~l~~-~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~ 112 (149)
T 4hbl_A 53 ENPQTLNSIGRHLDL-SSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQEAV 112 (149)
T ss_dssp SSSEEHHHHHHHHTC-CHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCC-CHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHHHHH
Confidence 357888999999985 9999999998875334431 11111 3477766655544
No 91
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=20.66 E-value=14 Score=24.82 Aligned_cols=32 Identities=25% Similarity=0.286 Sum_probs=25.4
Q ss_pred hhCCccchhhhhhhhhhhhhhhhhhhccCCCcc
Q psy16493 52 LLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLI 84 (151)
Q Consensus 52 ~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~I 84 (151)
.++...|||..+.+ +.+-||++|.++..-|.|
T Consensus 40 ~~~t~~ela~~l~~-~~stvs~~l~~L~~~G~v 71 (152)
T 1ku9_A 40 KPLTISDIMEELKI-SKGNVSMSLKKLEELGFV 71 (152)
T ss_dssp SCEEHHHHHHHHTC-CHHHHHHHHHHHHHTTSE
T ss_pred CCCCHHHHHHHHCc-CHHHHHHHHHHHHHCCCE
Confidence 35778899999985 999999999887544544
No 92
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=20.62 E-value=19 Score=24.34 Aligned_cols=53 Identities=17% Similarity=0.099 Sum_probs=35.6
Q ss_pred HhhCCccchhhhhhhhhhhhhhhhhhhccCCCccCC-----CCCc---ccChHHHHHHHHHh
Q psy16493 51 RLLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIGG-----SKPK---VATPAVVSKIEQYK 104 (151)
Q Consensus 51 ~~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~IGG-----SKPk---vatp~V~~kI~~yk 104 (151)
+.++.+.||++.+.+ +.+-||++|.++..-|.|-- .+.. ..|+.-...++.+.
T Consensus 45 ~~~~~~~~la~~l~~-s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~~~ 105 (145)
T 2a61_A 45 EGPKRPGELSVLLGV-AKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEKVI 105 (145)
T ss_dssp HCCBCHHHHHHHHTC-CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCC-CchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHHHHHH
Confidence 346899999999985 99999999988764454411 1111 34777665555443
No 93
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=20.61 E-value=19 Score=23.01 Aligned_cols=32 Identities=22% Similarity=0.144 Sum_probs=25.5
Q ss_pred hhCCccchhhhhhhhhhhhhhhhhhhccCCCcc
Q psy16493 52 LLFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLI 84 (151)
Q Consensus 52 ~GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~I 84 (151)
.++...||++.+.+ +.+-||++|.++..-|.|
T Consensus 33 ~~~s~~ela~~l~i-s~~tv~~~l~~L~~~glv 64 (109)
T 1sfx_A 33 GGMRVSEIARELDL-SARFVRDRLKVLLKRGFV 64 (109)
T ss_dssp CCBCHHHHHHHHTC-CHHHHHHHHHHHHHTTSE
T ss_pred CCCCHHHHHHHHCC-CHHHHHHHHHHHHHCCCE
Confidence 46788999999985 999999999887544443
No 94
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=20.54 E-value=1.5e+02 Score=21.09 Aligned_cols=53 Identities=15% Similarity=0.130 Sum_probs=33.0
Q ss_pred CCc-ccChHHHHHHHHHh-hhCCCcchHHHHhhhhhc-CCCCCCCCCCCChhhHHHhhhhc
Q psy16493 88 KPK-VATPAVVSKIEQYK-RENPTIFAWEIRERLISE-DVGVNGLALQTPPRNAIEEIKYS 145 (151)
Q Consensus 88 KPk-vatp~V~~kI~~yk-~enP~iFaWEIRdrLi~~-gvC~~~~vPSVSSInRilR~k~~ 145 (151)
++| ..|-+--..|.+|. .+||.+-.=++-++.-.+ |. -||.|+|++||+++..
T Consensus 7 ~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~-----~is~stis~ilk~k~~ 62 (144)
T 1iuf_A 7 IKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGK-----DISQPSVSQILSSKYS 62 (144)
T ss_dssp CSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSS-----CCSSSSTTHHHHHHHH
T ss_pred CcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCC-----CCcHHHHHHHHhhHHH
Confidence 444 44555555566676 789988665554421111 11 1688999999998765
No 95
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=20.32 E-value=14 Score=26.20 Aligned_cols=52 Identities=15% Similarity=0.265 Sum_probs=33.3
Q ss_pred hCCccchhhhhhhhhhhhhhhhhhhccCCCccCCC-----CCc---ccChHHHHHHHHHhh
Q psy16493 53 LFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLIGGS-----KPK---VATPAVVSKIEQYKR 105 (151)
Q Consensus 53 GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~IGGS-----KPk---vatp~V~~kI~~yk~ 105 (151)
++++.||+..+.+ +.+-||++|.++..-|.|--. +.. ..|++-.+.+++...
T Consensus 62 ~~t~~eLa~~l~~-~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~~ 121 (168)
T 3u2r_A 62 GMATLQIADRLIS-RAPDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAGLKLLKDLEE 121 (168)
T ss_dssp CEEHHHHHHHC----CTHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCC-ChhhHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHHHHHHHHHHH
Confidence 7899999999985 999999999987655555211 111 347766555555443
No 96
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=20.26 E-value=14 Score=26.05 Aligned_cols=31 Identities=16% Similarity=0.295 Sum_probs=25.6
Q ss_pred hCCccchhhhhhhhhhhhhhhhhhhccCCCcc
Q psy16493 53 LFRHYDIAQHVLHQQQGAVSKLLGTLRPPGLI 84 (151)
Q Consensus 53 GvRpcdISrqL~vVSHGCVSKIL~r~r~pG~I 84 (151)
++++.||++.+.+ +.+-||+++.++..-|.|
T Consensus 51 ~~t~~eLa~~l~~-~~~tvs~~v~~Le~~Glv 81 (147)
T 4b8x_A 51 ELPMSKIGERLMV-HPTSVTNTVDRLVRSGLV 81 (147)
T ss_dssp EEEHHHHHHHHTC-CHHHHHHHHHHHHHTTSE
T ss_pred CcCHHHHHHHHCC-CHHHHHHHHHHHHhCCCE
Confidence 4788999999985 999999999987644554
Done!