RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16493
(151 letters)
>gnl|CDD|128645 smart00351, PAX, Paired Box domain.
Length = 125
Score = 92.8 bits (231), Expect = 3e-25
Identities = 41/62 (66%), Positives = 47/62 (75%), Gaps = 7/62 (11%)
Query: 69 GAVSKLL------GTLRPPGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISE 122
G VSK+L G++RP G IGGSKPKVATP VV KI YK+ENP IFAWEIR+RL+SE
Sbjct: 48 GCVSKILGRYYETGSIRP-GAIGGSKPKVATPKVVKKIADYKQENPGIFAWEIRDRLLSE 106
Query: 123 DV 124
V
Sbjct: 107 GV 108
>gnl|CDD|238076 cd00131, PAX, Paired Box domain.
Length = 128
Score = 90.2 bits (224), Expect = 3e-24
Identities = 39/62 (62%), Positives = 47/62 (75%), Gaps = 7/62 (11%)
Query: 69 GAVSKLL------GTLRPPGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISE 122
G VSK+L G++RP G IGGSKP+VATP VV KIE YK+ENP +FAWEIR+RL+ E
Sbjct: 48 GCVSKILNRYYETGSIRP-GAIGGSKPRVATPEVVKKIEIYKQENPGMFAWEIRDRLLQE 106
Query: 123 DV 124
V
Sbjct: 107 GV 108
>gnl|CDD|109353 pfam00292, PAX, 'Paired box' domain.
Length = 125
Score = 88.3 bits (219), Expect = 2e-23
Identities = 44/78 (56%), Positives = 52/78 (66%), Gaps = 11/78 (14%)
Query: 64 LHQQQGAVSKLL------GTLRPPGLIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRE 117
L G VSK+L G++RP G+IGGSKPKVATP VV KI +YKRENP IFAWEIR+
Sbjct: 43 LRVSHGCVSKILGRYQETGSIRP-GVIGGSKPKVATPEVVKKIAEYKRENPGIFAWEIRD 101
Query: 118 RLISEDVGVNGLALQTPP 135
RL++E V N P
Sbjct: 102 RLLAEGVCDN----DNVP 115
>gnl|CDD|224443 COG1526, FdhD, Uncharacterized protein required for formate
dehydrogenase activity [Energy production and
conversion].
Length = 266
Score = 29.2 bits (66), Expect = 0.65
Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 18/63 (28%)
Query: 28 SLRELYALAA---SQQPL---------ASLVNQQQRLLFRHYDIAQHVLHQQQGAVSKLL 75
++ A QPL A+L + LL D+ +H AV KL+
Sbjct: 135 DAEDIVAALKALEKAQPLYRKTGGVHAAALFDPDGELLLVREDVGRHN------AVDKLI 188
Query: 76 GTL 78
G
Sbjct: 189 GRA 191
>gnl|CDD|185736 cd08995, GH32_Aec43_like, Glycosyl hydrolase family 32. This
glycosyl hydrolase family 32 (GH32) includes
characterized as well as uncharacterized proteins. GH32
enzymes cleave sucrose into fructose and glucose via
beta-fructofuranosidase activity, producing invert sugar
that is a mixture of dextrorotatory D-glucose and
levorotatory D-fructose, thus named invertase (EC
3.2.1.26). GH32 family also contains other
fructofuranosidases such as inulinase (EC 3.2.1.7),
exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and
transfructosidases such sucrose:sucrose
1-fructosyltransferase (EC 2.4.1.99), fructan:fructan
1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan
6-fructosyltransferase (EC 2.4.1.10), fructan:fructan
6G-fructosyltransferase (EC 2.4.1.243) and levan
fructosyltransferases (EC 2.4.1.-). These retaining
enzymes (i.e. they retain the configuration at anomeric
carbon atom of the substrate) catalyze hydrolysis in two
steps involving a covalent glycosyl enzyme intermediate:
an aspartate located close to the N-terminus acts as the
catalytic nucleophile and a glutamate acts as the
general acid/base; a conserved aspartate residue in the
Arg-Asp-Pro (RDP) motif stabilizes the transition state.
These enzymes are predicted to display a 5-fold
beta-propeller fold as found for GH43 and CH68. The
breakdown of sucrose is widely used as a carbon or
energy source by bacteria, fungi, and plants. Invertase
is used commercially in the confectionery industry,
since fructose has a sweeter taste than sucrose and a
lower tendency to crystallize.
Length = 280
Score = 28.8 bits (65), Expect = 1.1
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 2 PFVFVDFPEEQYWIL 16
PFVF + E YW+L
Sbjct: 125 PFVFWNEEEGCYWML 139
>gnl|CDD|176553 cd08612, GDPD_GDE4, Glycerophosphodiester phosphodiesterase domain
of mammalian glycerophosphodiester phosphodiesterase
GDE4 and similar proteins. This subfamily corresponds
to the glycerophosphodiester phosphodiesterase domain
(GDPD) present in mammalian GDE4 (also known as
glycerophosphodiester phosphodiesterase
domain-containing protein 1 (GDPD1)) and similar
proteins. Mammalian GDE4 is a transmembrane protein
whose cellular function has not yet been elucidated. It
is expressed widely, including in placenta, liver,
kidney, pancreas, spleen, thymus, ovary, small intestine
and peripheral blood leukocytes. It is also expressed in
the growth cones in neuroblastoma Neuro2a cells, which
suggests GDE4 may play some distinct role from other
members of the GDE family.
Length = 300
Score = 28.3 bits (64), Expect = 1.4
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 7/40 (17%)
Query: 90 KVATPAVVSK----IEQYKRENPTIFA---WEIRERLISE 122
KV ++ K + +YKRE+ T++ EI ++ E
Sbjct: 142 KVENDELIKKVSDLVRKYKREDITVWGSFNDEIVKKCHKE 181
>gnl|CDD|149071 pfam07801, DUF1647, Protein of unknown function (DUF1647). The
sequences making up this family are all derived from
hypothetical proteins expressed by C. elegans. The
region in question is approximately 160 amino acids
long. The GO annotation for this protein indicates the
protein to be involved in nematode larval development
and to have a positive regulation on growth rate.
Length = 142
Score = 27.7 bits (62), Expect = 1.5
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 8/49 (16%)
Query: 18 HLTLFNKLIGSLRE--------LYALAASQQPLASLVNQQQRLLFRHYD 58
HL K S+R+ LY+L S+ ++ L + FR ++
Sbjct: 72 HLNNSMKSYKSIRKYYPNHKYILYSLNLSEAYISKLPKNPKNFEFRVFN 120
>gnl|CDD|140294 PTZ00268, PTZ00268, glycosylphosphatidylinositol-specific
phospholipase C; Provisional.
Length = 380
Score = 27.2 bits (60), Expect = 4.1
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 65 HQQQGAVSKL-----LGTLRPPGLIGGSKPKVATPAVVSKIEQYKRENPTIFAW 113
+ Q G SKL + T R + G PK++ V S + KR+NP++ W
Sbjct: 250 YPQTGVPSKLYVTQAVYTPRNSDIFRGIFPKISRKVVSSIYDVAKRKNPSLLEW 303
>gnl|CDD|185102 PRK15180, PRK15180, Vi polysaccharide biosynthesis protein TviD;
Provisional.
Length = 831
Score = 27.0 bits (59), Expect = 4.7
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 9/51 (17%)
Query: 35 LAASQQPLASLVNQQQR--------LLFRHYDIAQHVLHQQQGAVSKLLGT 77
+AASQQ A+L NQQQ ++F H + +Q V K++GT
Sbjct: 306 IAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQA-YQDISDVEKIIGT 355
>gnl|CDD|177773 PLN00178, PLN00178, sulfite reductase.
Length = 623
Score = 27.0 bits (60), Expect = 4.8
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 87 SKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISEDVGVNGLALQ 132
K P SK+E K EN + E L +E +N A+Q
Sbjct: 43 VKKPTTEPPKRSKVEIIK-ENSNFLRHPLNEELATEAPNINEDAVQ 87
>gnl|CDD|184155 PRK13574, PRK13574, anthranilate synthase component I; Provisional.
Length = 420
Score = 26.3 bits (58), Expect = 6.6
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 18/57 (31%)
Query: 62 HVLHQQQGAVSKLLGTLR-------------PPGLIGGSKPKVATPAVVSKIEQYKR 105
HV H VSK++GTL+ P G + G+ PK ++ +E+YKR
Sbjct: 303 HVQH----IVSKVIGTLKKKYNALDVLKATFPAGTVSGA-PKPMAMNIIETLEEYKR 354
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.401
Gapped
Lambda K H
0.267 0.0723 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,122,581
Number of extensions: 744496
Number of successful extensions: 596
Number of sequences better than 10.0: 1
Number of HSP's gapped: 596
Number of HSP's successfully gapped: 22
Length of query: 151
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 63
Effective length of database: 7,034,450
Effective search space: 443170350
Effective search space used: 443170350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.6 bits)