RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16493
         (151 letters)



>d1k78a2 a.4.1.5 (A:82-142) Pax-5 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 61

 Score = 87.3 bits (217), Expect = 2e-24
 Identities = 31/42 (73%), Positives = 38/42 (90%)

Query: 83  LIGGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISEDV 124
           +IGGSKPKVATP VV KI +YKR+NPT+FAWEIR+RL++E V
Sbjct: 1   VIGGSKPKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERV 42


>d6paxa2 a.4.1.5 (A:69-133) Pax-6 {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 65

 Score = 84.3 bits (209), Expect = 4e-23
 Identities = 31/40 (77%), Positives = 36/40 (90%)

Query: 85  GGSKPKVATPAVVSKIEQYKRENPTIFAWEIRERLISEDV 124
           GGSKP+VATP VVSKI QYK+E P+IFAWEIR+RL+SE V
Sbjct: 1   GGSKPRVATPEVVSKIAQYKQECPSIFAWEIRDRLLSEGV 40


>d1pdnc_ a.4.1.5 (C:) Paired protein (prd) {Fruit fly (Drosophila
           melanogaster) [TaxId: 7227]}
          Length = 123

 Score = 59.2 bits (143), Expect = 8e-13
 Identities = 34/79 (43%), Positives = 48/79 (60%), Gaps = 6/79 (7%)

Query: 55  RHYDIAQHVLHQQQGAVSKLLGTLRPPGLI-----GGSKPKVATPAVVSKIEQYKRENPT 109
           R   I++  L    G VSK+L   +  G I     GGSKP++ATP + ++IE+YKR +P 
Sbjct: 34  RPCVISRQ-LRVSHGCVSKILNRYQETGSIRPGVIGGSKPRIATPEIENRIEEYKRSSPG 92

Query: 110 IFAWEIRERLISEDVGVNG 128
           +F+WEIRE+LI E V    
Sbjct: 93  MFSWEIREKLIREGVCDRS 111


>d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS
           {Thermus thermophilus [TaxId: 274]}
          Length = 254

 Score = 28.5 bits (63), Expect = 0.27
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 9/60 (15%)

Query: 93  TPAVVSKIEQYKRENPTIFAWEIRERLISEDVGVNGL--ALQTPPRNAIEEIKYSTLRKG 150
            P V+ +I + +         E+    + E   V     AL  P  + I E+K  +  +G
Sbjct: 8   VPGVLGEIARKRAS-------EVAPYPLPEPPSVPSFKEALLRPGLSVIAEVKRQSPSEG 60


>d2csfa1 a.35.1.7 (A:8-95) DNA-binding protein SATB2 {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 88

 Score = 24.0 bits (52), Expect = 5.0
 Identities = 6/22 (27%), Positives = 11/22 (50%)

Query: 60 AQHVLHQQQGAVSKLLGTLRPP 81
          A+   ++ QG + +LL     P
Sbjct: 34 AKVAANKSQGWLCELLRWKENP 55


>d2o4aa1 a.35.1.7 (A:370-452) DNA-binding protein SATB1 {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 83

 Score = 23.6 bits (51), Expect = 5.3
 Identities = 6/22 (27%), Positives = 12/22 (54%)

Query: 60 AQHVLHQQQGAVSKLLGTLRPP 81
          A+   ++ QG +S++L     P
Sbjct: 25 ARVAFNRTQGLLSEILRKEEDP 46


>d1vmaa1 a.24.13.1 (A:1-81) Signal recognition particle receptor,
           FtsY {Thermotoga maritima [TaxId: 2336]}
          Length = 81

 Score = 23.2 bits (50), Expect = 7.1
 Identities = 8/14 (57%), Positives = 9/14 (64%)

Query: 114 EIRERLISEDVGVN 127
           E+ E LI  DVGV 
Sbjct: 38  ELEELLIQADVGVE 51


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.137    0.401 

Gapped
Lambda     K      H
   0.267   0.0713    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 563,111
Number of extensions: 23426
Number of successful extensions: 51
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 10
Length of query: 151
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 73
Effective length of database: 1,336,656
Effective search space: 97575888
Effective search space used: 97575888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (22.7 bits)