Query psy16496
Match_columns 245
No_of_seqs 221 out of 381
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 22:46:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16496.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16496hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3k7i_B IHH, HHG-2, indian hedg 100.0 8.8E-53 3E-57 355.2 11.5 107 7-114 81-187 (187)
2 2ibg_E Protein hedgehog, GH039 100.0 3.8E-49 1.3E-53 326.1 9.9 98 7-104 53-150 (150)
3 1at0_A 17-hedgehog; developmen 100.0 1.2E-35 4.2E-40 244.7 11.4 121 115-241 1-131 (145)
4 3n1g_B Desert hedgehog protein 100.0 1.9E-34 6.4E-39 243.4 10.9 98 7-104 73-170 (170)
5 2in0_A Endonuclease PI-MTUI; h 99.9 3.9E-22 1.3E-26 161.4 10.0 95 115-224 1-99 (139)
6 1mi8_A DNAB intein; all beta-s 99.9 2.2E-21 7.6E-26 160.1 11.3 96 113-222 1-99 (158)
7 4e2u_A PHO RADA intein; HINT-f 99.8 1.3E-21 4.4E-26 164.1 7.7 101 112-223 2-125 (168)
8 2imz_A Endonuclease PI-MTUI; N 99.8 4.3E-20 1.5E-24 153.4 8.7 93 115-222 1-97 (168)
9 1am2_A MXE GYRA intein; protei 99.8 3.4E-19 1.2E-23 153.2 11.7 101 114-223 1-109 (199)
10 2jmz_A Hypothetical protein MJ 99.8 2E-20 6.7E-25 159.0 3.6 123 111-242 4-159 (186)
11 2lcj_A PAB POLC intein; hydrol 99.8 5.6E-19 1.9E-23 149.8 10.3 99 115-222 1-121 (185)
12 2keq_A DNA polymerase III alph 99.5 5.7E-14 1.9E-18 114.4 7.0 99 113-218 1-102 (139)
13 3nzm_A SSP DNAE intein, DNA po 99.3 2.1E-13 7.3E-18 115.0 2.5 103 113-224 8-115 (168)
14 1dfa_A PI-SCEI endonuclease; i 99.2 2.2E-12 7.4E-17 122.8 3.8 89 115-220 1-104 (454)
15 1dq3_A Endonuclease; PI-PFUI, 98.9 5.4E-09 1.8E-13 99.2 9.9 100 115-221 1-127 (454)
16 2cw8_A Endonuclease PI-pkoii; 98.7 4.2E-08 1.4E-12 95.2 10.2 97 117-222 3-124 (537)
17 1gpp_A Endonuclease PI-SCEI; h 98.5 1.6E-07 5.4E-12 82.2 7.2 72 113-193 9-95 (237)
18 1oa8_A Ataxin-1; RNA binding, 97.9 1.2E-05 4.1E-10 65.2 5.2 107 112-221 10-125 (133)
19 1lbu_A Muramoyl-pentapeptide c 97.8 9E-06 3.1E-10 69.5 3.9 82 17-105 114-204 (213)
20 2vo9_A EAD500, L-alanyl-D-glut 95.7 0.034 1.2E-06 46.6 8.0 89 14-104 33-151 (179)
21 1xp2_A EAD500, PLY500, L-alany 95.6 0.038 1.3E-06 46.7 8.0 89 14-104 33-151 (179)
22 3qve_A HMG box-containing prot 92.0 0.097 3.3E-06 42.3 3.1 101 113-218 9-131 (139)
23 1r44_A D-alanyl-D-alanine dipe 85.6 0.6 2.1E-05 39.9 3.7 57 10-68 38-128 (202)
24 2in0_A Endonuclease PI-MTUI; h 84.7 5.2 0.00018 31.0 8.6 42 117-159 70-111 (139)
25 2jmz_A Hypothetical protein MJ 82.0 2.4 8.1E-05 34.9 5.8 65 116-192 99-166 (186)
26 1at0_A 17-hedgehog; developmen 81.7 6.8 0.00023 31.0 8.3 57 117-175 69-130 (145)
27 4e2u_A PHO RADA intein; HINT-f 76.5 11 0.00036 30.5 8.0 43 117-159 94-138 (168)
28 4f78_A D,D-dipeptidase/D,D-car 71.8 12 0.0004 32.9 7.6 78 10-90 43-152 (255)
29 1mi8_A DNAB intein; all beta-s 65.8 17 0.00059 28.5 6.8 28 117-145 72-99 (158)
30 3gsl_A Disks large homolog 4; 63.8 14 0.00048 29.1 6.0 18 208-225 145-162 (196)
31 3ask_A E3 ubiquitin-protein li 63.7 34 0.0012 29.5 8.7 77 136-223 4-87 (226)
32 3r0h_A INAD, inactivation-NO-a 59.6 15 0.00051 29.6 5.5 17 209-225 152-168 (206)
33 1lpl_A Hypothetical 25.4 kDa p 58.7 26 0.0009 26.1 6.2 61 131-193 8-79 (95)
34 1whg_A Tubulin specific chaper 57.8 25 0.00084 27.2 6.1 44 131-176 29-72 (113)
35 3hsh_A Endostatin, collagen al 57.3 4.4 0.00015 27.8 1.5 33 208-240 17-56 (56)
36 3rdv_A CAP-Gly domain-containi 52.6 46 0.0016 23.5 6.4 55 133-193 1-66 (72)
37 1whl_A Cylindromatosis tumor s 52.6 48 0.0016 24.6 6.8 60 133-193 6-82 (95)
38 4b6m_A Tubulin-specific chaper 51.2 34 0.0012 25.1 5.6 41 131-176 2-43 (84)
39 1am2_A MXE GYRA intein; protei 46.7 14 0.00047 30.7 3.3 29 117-145 73-108 (199)
40 3nx6_A 10KDA chaperonin; bacte 45.9 11 0.00038 28.3 2.3 25 124-150 49-73 (95)
41 2cp2_A CLIP-115, KIAA0291; mic 45.7 57 0.0019 24.3 6.2 59 129-193 13-82 (95)
42 2lcj_A PAB POLC intein; hydrol 44.3 68 0.0023 25.9 7.2 29 117-145 90-121 (185)
43 2k50_A Replication factor A re 42.9 33 0.0011 25.4 4.6 73 129-223 7-82 (115)
44 3e0e_A Replication protein A; 42.8 40 0.0014 24.6 5.0 10 211-220 63-72 (97)
45 1ixd_A Cylindromatosis tumour- 42.7 54 0.0019 24.8 5.8 57 133-193 16-84 (104)
46 4a3u_A NCR, NADH\:flavin oxido 41.0 12 0.00039 34.0 2.1 108 12-119 71-201 (358)
47 2imz_A Endonuclease PI-MTUI; N 40.8 17 0.00057 28.8 2.8 27 117-144 70-96 (168)
48 1we3_O CPN10(groes); chaperoni 40.5 15 0.00052 27.8 2.3 25 124-150 54-78 (100)
49 4gbu_A NADPH dehydrogenase 1; 40.3 12 0.00042 34.3 2.2 48 71-118 171-220 (400)
50 1pcq_O Groes protein; chaperon 39.9 14 0.00049 27.8 2.1 26 124-150 49-74 (97)
51 2e3h_A Restin; CAP-Gly, cytopl 38.7 90 0.0031 22.9 6.3 54 134-193 1-65 (90)
52 2hc8_A PACS, cation-transporti 38.6 20 0.00068 27.1 2.8 24 204-227 22-45 (113)
53 3gr7_A NADPH dehydrogenase; fl 38.5 20 0.00069 32.1 3.3 48 71-118 143-192 (340)
54 1t2w_A Sortase; transpeptidase 37.8 43 0.0015 26.1 4.8 25 129-154 69-93 (145)
55 1txq_A Dynactin 1; protein com 37.1 93 0.0032 22.9 6.2 59 130-193 8-77 (93)
56 3l5a_A NADH/flavin oxidoreduct 37.0 24 0.00083 32.8 3.6 46 71-116 169-216 (419)
57 2cp3_A CLIP-115, KIAA0291; mic 37.0 1E+02 0.0034 22.3 6.3 55 133-193 6-71 (84)
58 2cp5_A Restin; microtubule bin 36.2 80 0.0027 25.3 6.1 58 130-193 60-128 (141)
59 2cp6_A Restin; microtubule bin 35.3 88 0.003 25.9 6.4 55 133-193 37-102 (172)
60 2kij_A Copper-transporting ATP 34.6 24 0.00082 27.1 2.7 23 205-227 35-57 (124)
61 1p3h_A 10 kDa chaperonin; beta 34.0 23 0.00078 26.7 2.4 25 124-150 51-76 (99)
62 2coz_A CAP350, centrosome-asso 33.8 90 0.0031 24.3 5.9 58 130-193 27-95 (122)
63 4ab4_A Xenobiotic reductase B; 33.5 28 0.00095 31.7 3.4 106 12-117 71-200 (362)
64 3gka_A N-ethylmaleimide reduct 33.3 28 0.00096 31.7 3.4 108 12-119 79-210 (361)
65 3n3f_A Collagen alpha-1(XV) ch 33.1 25 0.00084 23.8 2.2 32 208-239 15-53 (54)
66 2coy_A Dynactin-1; microtubule 33.1 1.1E+02 0.0036 23.5 6.1 59 130-193 29-98 (112)
67 3fn5_A Sortase A; sortase-fold 33.0 1.2E+02 0.0042 24.9 7.1 34 130-165 94-127 (187)
68 2qqr_A JMJC domain-containing 32.4 1.1E+02 0.0039 23.6 6.2 42 131-179 2-43 (118)
69 1whh_A Clipr-59; microtubule b 32.3 1.2E+02 0.004 22.9 6.2 57 131-193 22-89 (102)
70 4g1h_A Sortase family protein; 32.1 51 0.0017 27.9 4.6 28 129-158 124-151 (215)
71 2cp0_A Clipr-59 protein, clipr 31.4 1.2E+02 0.0041 22.5 6.0 57 131-193 13-80 (95)
72 3g66_A Sortase C; pilus, trans 31.3 43 0.0015 28.3 4.0 35 129-165 123-157 (212)
73 1ssf_A Transformation related 29.8 98 0.0033 25.2 5.6 67 121-192 40-114 (156)
74 3mlq_E Transcription-repair co 29.7 1E+02 0.0036 21.4 5.2 45 134-182 2-46 (71)
75 2cow_A Kinesin-like protein KI 29.6 1.2E+02 0.004 22.8 5.8 56 132-193 21-87 (100)
76 3b0p_A TRNA-dihydrouridine syn 29.5 40 0.0014 30.2 3.7 37 55-91 53-89 (350)
77 2ln7_A LPXTG-SITE transpeptida 29.2 39 0.0013 26.6 3.2 26 128-154 69-94 (147)
78 1wgs_A MYST histone acetyltran 28.4 1.8E+02 0.006 22.7 6.9 43 132-176 10-52 (133)
79 1p1d_A PDZ45, glutamate recept 28.3 62 0.0021 25.8 4.4 18 208-225 150-167 (196)
80 2okq_A Hypothetical protein YB 28.2 35 0.0012 27.5 2.7 11 37-47 59-69 (141)
81 2e3i_A Restin; CAP-Gly, cytopl 28.2 1.4E+02 0.0049 21.6 5.9 55 133-193 1-66 (86)
82 3kru_A NADH:flavin oxidoreduct 27.9 32 0.0011 31.0 2.8 106 13-120 74-193 (343)
83 2l8d_A Lamin-B receptor; DNA b 27.8 1.6E+02 0.0054 20.7 6.3 52 131-188 6-58 (66)
84 3hgj_A Chromate reductase; TIM 27.5 43 0.0015 30.0 3.5 47 71-117 151-199 (349)
85 3p8d_A Medulloblastoma antigen 26.4 1.7E+02 0.0057 20.4 6.2 54 133-193 5-58 (67)
86 2k1g_A Lipoprotein SPR; soluti 26.3 8.1 0.00028 30.6 -1.4 20 126-145 59-78 (135)
87 1whj_A 1700024K14RIK, riken cD 26.0 2.1E+02 0.0072 21.5 8.4 58 130-193 20-88 (102)
88 3o0p_A Sortase family protein; 25.2 32 0.0011 29.2 2.1 35 129-165 128-162 (216)
89 2z0w_A CAP-Gly domain-containi 25.1 69 0.0024 23.9 3.7 59 129-193 5-74 (96)
90 3m9b_A Proteasome-associated A 24.7 1.4E+02 0.0049 26.1 6.2 16 209-224 211-226 (251)
91 3rcc_A Sortase SRTA; sortase f 24.2 78 0.0027 25.2 4.2 35 129-165 75-109 (160)
92 3db3_A E3 ubiquitin-protein li 24.2 2.9E+02 0.01 22.5 7.8 78 136-224 12-105 (161)
93 3dm3_A Replication factor A; p 24.0 2.2E+02 0.0074 21.0 7.6 70 128-223 4-77 (105)
94 1o94_A Tmadh, trimethylamine d 23.6 51 0.0017 32.3 3.5 47 71-117 148-196 (729)
95 2kw8_A LPXTG-SITE transpeptida 23.6 62 0.0021 25.6 3.4 34 130-165 84-117 (158)
96 3mea_A SAGA-associated factor 23.3 1.2E+02 0.004 25.2 5.1 68 111-193 32-104 (180)
97 3tjl_A NADPH dehydrogenase; OL 23.0 58 0.002 30.2 3.6 46 71-116 166-214 (407)
98 3l5l_A Xenobiotic reductase A; 22.9 33 0.0011 30.9 1.9 47 71-117 157-205 (363)
99 4g1j_A Sortase family protein; 22.6 37 0.0013 29.0 2.0 35 129-165 131-165 (222)
100 3r8n_P 30S ribosomal protein S 22.4 50 0.0017 24.1 2.4 16 228-243 32-47 (82)
101 3dlm_A Histone-lysine N-methyl 21.6 3.6E+02 0.012 22.9 7.9 72 134-222 8-79 (213)
102 2eqq_A GBP, growth-blocking pe 21.3 53 0.0018 19.0 1.8 19 112-132 4-22 (28)
103 1e0t_A Pyruvate kinase, PK; ph 20.6 63 0.0021 30.7 3.3 17 208-224 113-129 (470)
104 2z1c_A Hydrogenase expression/ 20.2 53 0.0018 23.4 2.1 16 209-224 33-48 (75)
No 1
>3k7i_B IHH, HHG-2, indian hedgehog protein; alpha+beta sandwich, autocatalytic cleavage, cell membrane, developmental protein, disease mutation; 1.44A {Homo sapiens} PDB: 3k7g_B 3k7j_B 3k7h_B 3n1f_A 3n1m_B 3n1o_A 3n1p_B 3m1n_A 3mxw_A 3ho5_H 1vhh_A 3d1m_A 3n1r_A 2wg4_A 2wfx_A 2wfq_A 2wfr_A 2wg3_A*
Probab=100.00 E-value=8.8e-53 Score=355.19 Aligned_cols=107 Identities=68% Similarity=1.156 Sum_probs=101.1
Q ss_pred cccchhhhcHHHHHHHHHHHHHHhhhCCCceEEEEeeeCCCCCCCCCCcccceeeeeeEecCCCcchHHHHHhhhhhcCc
Q psy16496 7 NLTFLFFCFQRLKEKLNTLAISVMNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGF 86 (245)
Q Consensus 7 ~~~~~r~m~~~~~~~l~~l~~~v~~~w~~v~lrv~~~w~~~~~~~~~slh~egra~di~~s~~~~~k~g~La~la~~aGf 86 (245)
||||||+|||||++||+.||++||||||||||||||||||++||+++|||||||||||||||||++||||||+||++|||
T Consensus 81 ~tgadR~Mt~Rc~~kL~~La~~V~nqwpGvkLRVtegwde~~hh~~~SLHyEGRAvDIttsdrd~~k~g~LarLAveAGF 160 (187)
T 3k7i_B 81 NTGADRLMTQRCKDRLNSLAISVMNQWPGVKLRVTKGWDEDGHHSEESLHYEGRAVDITTSDRDRNKYGLLARLAVEAGF 160 (187)
T ss_dssp SSSGGGEECHHHHHHHHHHHHHHHHHSTTCCEEEEECCCSSCCSCTTCGGGGTCEEEEEETTCCGGGHHHHHHHHHHTTC
T ss_pred CCCcchhhCHHHHHHHHHHHHHHHHhcCCceEEEeecccCCCCCCcccccccceeeEEEecccchhHHHHHHHHHHHcCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEcccceeeeccccccccccccCcc
Q psy16496 87 DWVYYESRNHIHCSVKTETTHVNGKGAG 114 (245)
Q Consensus 87 d~V~~~~r~~ih~~vks~~s~~aak~gg 114 (245)
|||+|++++|||||||+|+| .++++||
T Consensus 161 DwV~Y~sr~~IH~SVk~d~~-~~~~~gg 187 (187)
T 3k7i_B 161 DWVYYESKAHVHCSVKSEHS-AAAKTGG 187 (187)
T ss_dssp SEEEEEETTEEEEECCCSSS-CC-----
T ss_pred CEEEeccCCeEEEEeccchh-hhhhcCC
Confidence 99999999999999999999 8888775
No 2
>2ibg_E Protein hedgehog, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: d.65.1.2
Probab=100.00 E-value=3.8e-49 Score=326.06 Aligned_cols=98 Identities=66% Similarity=1.039 Sum_probs=92.3
Q ss_pred cccchhhhcHHHHHHHHHHHHHHhhhCCCceEEEEeeeCCCCCCCCCCcccceeeeeeEecCCCcchHHHHHhhhhhcCc
Q psy16496 7 NLTFLFFCFQRLKEKLNTLAISVMNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGF 86 (245)
Q Consensus 7 ~~~~~r~m~~~~~~~l~~l~~~v~~~w~~v~lrv~~~w~~~~~~~~~slh~egra~di~~s~~~~~k~g~La~la~~aGf 86 (245)
+|||||+||||||+||+.||++||||||||+|||||||+|++||+++||||||||||||+||+|++||||||+||++|||
T Consensus 53 ~~g~dR~MT~R~k~kL~~La~~v~~~w~gv~lrVteawd~~~~~~~~SLHyeGRAvdit~sd~d~~k~g~La~lAv~aGF 132 (150)
T 2ibg_E 53 GTGADRLMSKRCKEKLNVLAYSVMNEWPGIRLLVTESWDEDYHHGQESLHYEGRAVTIATSDRDQSKYGMLARLAVEAGF 132 (150)
T ss_dssp -----CEECHHHHHHHHHHHHHHHHHSTTCCEEEEESSCSSCCSCSCCGGGGTCEEEEEETTCCGGGHHHHHHHHHHHTC
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHcCCceEEEEEcccCCCCCCCccccccceeEEEEecCCChHHHHHHHHHHHHcCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEcccceeeeccccc
Q psy16496 87 DWVYYESRNHIHCSVKTE 104 (245)
Q Consensus 87 d~V~~~~r~~ih~~vks~ 104 (245)
|||+|++++|||||||+|
T Consensus 133 DwV~y~~~~~ih~SV~~d 150 (150)
T 2ibg_E 133 DWVSYVSRRHIYCSVKSD 150 (150)
T ss_dssp SEEECCCSSCEEEECCCC
T ss_pred CEEEeCCCCEEEEEEecC
Confidence 999999999999999986
No 3
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=100.00 E-value=1.2e-35 Score=244.68 Aligned_cols=121 Identities=32% Similarity=0.688 Sum_probs=110.7
Q ss_pred cccCCcEEEeeCCCceeccCCCCCCEEEEeeCCCCceeEEEEEEEEecCCCceeceEEEEeCCCCeEEecCCCeeEeecC
Q psy16496 115 CFTGDSTVTLDNHKTINITDLNIGDKVLTLNTITGEMEYSEVLLFLHRDPNLVHNFVQITTESGSLIKMTPSHLILRWHR 194 (245)
Q Consensus 115 CFpgdt~V~l~dG~~k~I~dL~~GDrVLa~d~~~G~~~yS~Vi~fl~r~~~~~~~Fv~I~Te~g~~L~lTp~Hlifv~~~ 194 (245)
||||+|+|+|+||.+|+|+||++||+||++|+ +|+++||+|++|+||++++...|++|+|++|++|++||+||||++++
T Consensus 1 CF~~~t~V~~~~G~~k~i~eL~~GD~Vla~d~-~G~~~~s~V~~~~~r~~~~~~~f~~I~t~~g~~L~lTp~H~i~v~~~ 79 (145)
T 1at0_A 1 CFTPESTALLESGVRKPLGELSIGDRVLSMTA-NGQAVYSEVILFMDRNLEQMQNFVQLHTDGGAVLTVTPAHLVSVWQP 79 (145)
T ss_dssp CBCTTCEEEBTTSCEEEGGGCCTTCEEEEECT-TSCEEEEEEEEEEEEEEEEEEEEEEEEETTSCEEEECTTCEEEEEET
T ss_pred CcCcCCEEEeCCCCEeEHHHcCCCCEEEEECC-CCCEEEEEEEEEEeeCCCcceeEEEEEECCCCEEEEeCCCEEEEecC
Confidence 99999999999999999999999999999998 89999999999999999888999999999999999999999999983
Q ss_pred CCccccCCCcceEeCCCCCCCCEEEEccC--Cccc--------cceecccCCCCCCC
Q psy16496 195 PNAKSILNDIEYTYAERVRVNDSIIVHKN--GKAR--------NGIQRGAPIPPPRP 241 (245)
Q Consensus 195 ~~~~~~~~~~~~v~A~~v~~GD~V~v~~g--~~~~--------~~~~~G~y~P~~~~ 241 (245)
+. ...+|+||++|++||+|++.++ ++++ .+.+.|+|||||.+
T Consensus 80 -~~----~~~~~v~A~~l~~GD~v~~~~~~~~~~~~~~V~~v~~~~~~G~yaPlT~~ 131 (145)
T 1at0_A 80 -ES----QKLTFVFADRIEEKNQVLVRDVETGELRPQRVVKVGSVRSKGVVAPLTRE 131 (145)
T ss_dssp -TT----TEEEEEEGGGCCTTCEEEEECTTTCCEEEEEEEEEEEEEEEEEEEEEESS
T ss_pred -CC----CcEEEEEHHHCcCCCEEEEecCCCCCEEEEEEEEEEEEEEeeeEccccCc
Confidence 21 2468999999999999999988 4332 67889999999976
No 4
>3n1g_B Desert hedgehog protein; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence, fibronectins; 1.90A {Homo sapiens} SCOP: d.65.1.2 PDB: 3n1q_B
Probab=100.00 E-value=1.9e-34 Score=243.39 Aligned_cols=98 Identities=73% Similarity=1.192 Sum_probs=96.4
Q ss_pred cccchhhhcHHHHHHHHHHHHHHhhhCCCceEEEEeeeCCCCCCCCCCcccceeeeeeEecCCCcchHHHHHhhhhhcCc
Q psy16496 7 NLTFLFFCFQRLKEKLNTLAISVMNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGF 86 (245)
Q Consensus 7 ~~~~~r~m~~~~~~~l~~l~~~v~~~w~~v~lrv~~~w~~~~~~~~~slh~egra~di~~s~~~~~k~g~La~la~~aGf 86 (245)
|||++|+|++||+++|+.|+++|+|+|||++|+|||||+|+.+|+++||||+|||+||++++++.++|++|+++|.++||
T Consensus 73 ~tg~~~~Md~rl~d~L~~L~~~v~~~~~g~pi~V~SGYRsp~~Na~~SlH~~GrAaDI~~~~~~~~k~~~La~~A~~~gf 152 (170)
T 3n1g_B 73 NSGADRLMTERCKERVNALAIAVMNMWPGVRLRVTEGWDEDGHHAQDSLHYEGRALDITTSDRDRNKYGLLARLAVEAGF 152 (170)
T ss_dssp SSSGGGEECHHHHHHHHHHHHHHHHHSTTCCEEEEESSCCSCCSCTTCGGGGTCEEEEEETTCCGGGHHHHHHHHHHTTC
T ss_pred ccCCcccCCHHHHHHHHHHHHHHhcccCCCcEEEEecccCccccCCcCchheeEEEEEEeCCccHHHHHHHHHHHHHCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEcccceeeeccccc
Q psy16496 87 DWVYYESRNHIHCSVKTE 104 (245)
Q Consensus 87 d~V~~~~r~~ih~~vks~ 104 (245)
|||+|++++||||+||+|
T Consensus 153 d~V~Y~~~~fVHvsvk~~ 170 (170)
T 3n1g_B 153 DWVYYESRNHVHVSVKAD 170 (170)
T ss_dssp SEEECCCSSCEEEECCCC
T ss_pred CEEEeCCCCEEEEEEeCC
Confidence 999999999999999986
No 5
>2in0_A Endonuclease PI-MTUI; hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 2l8l_A 2in9_A 2in8_A 3ifj_A 3igd_A
Probab=99.87 E-value=3.9e-22 Score=161.37 Aligned_cols=95 Identities=17% Similarity=0.303 Sum_probs=87.9
Q ss_pred cccCCcEE-EeeCCCceeccCC---CCCCEEEEeeCCCCceeEEEEEEEEecCCCceeceEEEEeCCCCeEEecCCCeeE
Q psy16496 115 CFTGDSTV-TLDNHKTINITDL---NIGDKVLTLNTITGEMEYSEVLLFLHRDPNLVHNFVQITTESGSLIKMTPSHLIL 190 (245)
Q Consensus 115 CFpgdt~V-~l~dG~~k~I~dL---~~GDrVLa~d~~~G~~~yS~Vi~fl~r~~~~~~~Fv~I~Te~g~~L~lTp~Hlif 190 (245)
||+++|.| +|++|..+||+|| ++||+|++.|. +|++.+++|..|+++. .+.+++|+|++|+.|.+||+||||
T Consensus 1 C~~~~T~V~~~~~G~~~~I~~l~~~~~gd~V~s~d~-~g~~~~~~v~~~~~~~---~~~~~~i~t~~G~~i~~T~~H~~~ 76 (139)
T 2in0_A 1 CLAEGTRIFDPVTGTTHRIEDVVDGRKPIHVVAAAK-DGTLHARPVVSWFDQG---TRDVIGLRIAGGAILWATPDHKVL 76 (139)
T ss_dssp CEETTCEEECTTTCCEEEHHHHHHTTCCCEEEEECT-TSCEEEEEEEEEEEEE---EEEEEEEEETTSCEEEECTTCEEE
T ss_pred CcCCCCEEEECCCCCEEEHHHhhCccCCCEEEEECC-CCCEEEEEEEEEEEcC---CcEEEEEEeCCCCEEEecCCCeEE
Confidence 99999999 6699999999999 99999999996 9999999999999865 567999999999999999999999
Q ss_pred eecCCCccccCCCcceEeCCCCCCCCEEEEccCC
Q psy16496 191 RWHRPNAKSILNDIEYTYAERVRVNDSIIVHKNG 224 (245)
Q Consensus 191 v~~~~~~~~~~~~~~~v~A~~v~~GD~V~v~~g~ 224 (245)
+.+ .|++|++|++||.|++.++.
T Consensus 77 t~~-----------gw~~a~~L~~Gd~v~~~~~~ 99 (139)
T 2in0_A 77 TEY-----------GWRAAGELRKGDRVAVRDVE 99 (139)
T ss_dssp ETT-----------EEEEGGGCCTTCEEEEECTT
T ss_pred ecC-----------CcEEHHHCCCCCEEEeCCCc
Confidence 664 59999999999999998864
No 6
>1mi8_A DNAB intein; all beta-strands, hydrolase; 2.00A {Synechocystis SP} SCOP: b.86.1.2
Probab=99.85 E-value=2.2e-21 Score=160.06 Aligned_cols=96 Identities=22% Similarity=0.307 Sum_probs=88.7
Q ss_pred cccccCCcEEEeeC-CCceeccCCC--CCCEEEEeeCCCCceeEEEEEEEEecCCCceeceEEEEeCCCCeEEecCCCee
Q psy16496 113 AGCFTGDSTVTLDN-HKTINITDLN--IGDKVLTLNTITGEMEYSEVLLFLHRDPNLVHNFVQITTESGSLIKMTPSHLI 189 (245)
Q Consensus 113 ggCFpgdt~V~l~d-G~~k~I~dL~--~GDrVLa~d~~~G~~~yS~Vi~fl~r~~~~~~~Fv~I~Te~g~~L~lTp~Hli 189 (245)
+|||+++|.|.|++ |+.++|+||. .||+|+++|+++|++.+++|..|+++ ..+.+++|+|++|+.|.+||+|||
T Consensus 1 s~C~~~dt~V~~~~~G~~~~I~el~~~~g~~V~s~d~~~g~~~~~~v~~~~~~---~~~~~~~i~t~~G~~i~~T~~H~~ 77 (158)
T 1mi8_A 1 SGAISGDSLISLASTGKRVSIKDLLDEKDFEIWAINEQTMKLESAKVSRVFMT---GKKLVYILKTRLGRTIKATANHRF 77 (158)
T ss_dssp CCCEETTCEEEETTTTEEEESGGGTTCCSCEEEEEETTTTEEEEEECCEEEEE---EEEEEEEEEETTCCEEEECTTCEE
T ss_pred CCCcCCCcEEEecCCCeEEEHHHhhhccCCEEEEEeCCCCEEEEEEeeeeeec---CCceEEEEEECCCCEEEEeCCceE
Confidence 48999999999999 9889999999 99999999977899999999999874 357899999999999999999999
Q ss_pred EeecCCCccccCCCcceEeCCCCCCCCEEEEcc
Q psy16496 190 LRWHRPNAKSILNDIEYTYAERVRVNDSIIVHK 222 (245)
Q Consensus 190 fv~~~~~~~~~~~~~~~v~A~~v~~GD~V~v~~ 222 (245)
|+.+ .|++|++|++||.|++..
T Consensus 78 ~t~~-----------gw~~a~~L~~GD~v~~~~ 99 (158)
T 1mi8_A 78 LTID-----------GWKRLDELSLKEHIALPR 99 (158)
T ss_dssp EETT-----------EEEEGGGCCTTCEEEEEC
T ss_pred Eecc-----------CCEEhhhCCCCCEEEecc
Confidence 9986 489999999999999874
No 7
>4e2u_A PHO RADA intein; HINT-fold, unknown function; 1.58A {Pyrococcus horikoshii} PDB: 2lqm_A 4e2t_A*
Probab=99.85 E-value=1.3e-21 Score=164.08 Aligned_cols=101 Identities=22% Similarity=0.352 Sum_probs=91.5
Q ss_pred CcccccCCcEEEeeCCCceeccCCCCC-----------------------CEEEEeeCCCCceeEEEEEEEEecCCCcee
Q psy16496 112 GAGCFTGDSTVTLDNHKTINITDLNIG-----------------------DKVLTLNTITGEMEYSEVLLFLHRDPNLVH 168 (245)
Q Consensus 112 ~ggCFpgdt~V~l~dG~~k~I~dL~~G-----------------------DrVLa~d~~~G~~~yS~Vi~fl~r~~~~~~ 168 (245)
+|+||+++|+|+|+||..++|+||..+ ++|+|+|+.+|++++++|..|+++...
T Consensus 2 ~GkC~~~dt~V~l~dG~~~~I~el~~~~~~~~~~~g~~~~~~g~~~~~~~~~V~s~d~~~g~~~~~~v~~~~~~~~~--- 78 (168)
T 4e2u_A 2 QHMAFARDTEVYYENDTVPHMESIEEMYSKYASMNGELPFDNGYAVPLDNVFVYTLDIASGEIKKTRASYIYREKVE--- 78 (168)
T ss_dssp CSCCEETTCEEEEEETTEEEEEEHHHHHHHHHHHHCCEEETTEEEEECSSEEEEEECTTTCCEEEEECCEEEEEEEE---
T ss_pred CCcccCCCCEEEEeCCCEEEHHHHHhhhhhhccccCceeecccccccCCCeEEEEEeCCCCCEEEEEEeEEEEcCCC---
Confidence 589999999999999999999999873 899999966999999999999987642
Q ss_pred ceEEEEeCCCCeEEecCCCeeEeecCCCccccCCCcceEeCCCCCCCCEEEEccC
Q psy16496 169 NFVQITTESGSLIKMTPSHLILRWHRPNAKSILNDIEYTYAERVRVNDSIIVHKN 223 (245)
Q Consensus 169 ~Fv~I~Te~g~~L~lTp~Hlifv~~~~~~~~~~~~~~~v~A~~v~~GD~V~v~~g 223 (245)
.|++|+|++|++|++||+||||+.. + ...|++|++|++||+|++.++
T Consensus 79 ~~~~i~t~~G~~i~~T~~Hp~~~~~-~-------~~~w~~a~~L~~Gd~l~~~~g 125 (168)
T 4e2u_A 79 KLIEIKLSSGYSLKVTPSHPVLLFR-D-------GLQWVPAAEVKPGDVVVGVRN 125 (168)
T ss_dssp EEEEEEETTSCEEEECTTCEEEEES-S-------SEEEEEGGGCCTTCEEEEEET
T ss_pred eEEEEEECCCCEEEECCCCcEEEEc-C-------CCEEEEHHHCCCCCEEEeccC
Confidence 6999999999999999999999986 1 238999999999999999987
No 8
>2imz_A Endonuclease PI-MTUI; N-terminal cysteine sulfinic acid C-terminal aminosuccinimide, hydrolase; 1.70A {Mycobacterium tuberculosis}
Probab=99.81 E-value=4.3e-20 Score=153.38 Aligned_cols=93 Identities=16% Similarity=0.276 Sum_probs=86.5
Q ss_pred cccCCcEEEe-eCCCceeccCCCC---CCEEEEeeCCCCceeEEEEEEEEecCCCceeceEEEEeCCCCeEEecCCCeeE
Q psy16496 115 CFTGDSTVTL-DNHKTINITDLNI---GDKVLTLNTITGEMEYSEVLLFLHRDPNLVHNFVQITTESGSLIKMTPSHLIL 190 (245)
Q Consensus 115 CFpgdt~V~l-~dG~~k~I~dL~~---GDrVLa~d~~~G~~~yS~Vi~fl~r~~~~~~~Fv~I~Te~g~~L~lTp~Hlif 190 (245)
||++||.|.+ ++|..++|+||.. ||+|+++|+ +|++++++|..|+++. .+.+++|+|++|+.|++||+||||
T Consensus 1 C~~~dt~V~~~~~G~~~~I~el~~~~~~~~V~~~d~-~g~~~~~~v~~~~~~~---~~~~~~i~t~~G~~i~~T~~H~~~ 76 (168)
T 2imz_A 1 CLAEGTRIFDPVTGTTHRIEDVVDGRKPIHVVAAAK-DGTLHARPVVSWFDQG---TRDVIGLRIAGGAILWATPDHKVL 76 (168)
T ss_dssp CEETTCEEECTTTCCEEEHHHHHHTTCCCEEEEECT-TSCEEEEEEEEEEEEE---EEEEEEEEETTSCEEEECTTCEEE
T ss_pred CcCCCCEEEECCCCcEEEHHHhhCccCCCEEEEECC-CCCEEEEEeeeEEEcC---CceEEEEEeCCCCEEEEcCCCCEE
Confidence 9999999999 9999999999987 889999998 9999999999999875 567999999999999999999999
Q ss_pred eecCCCccccCCCcceEeCCCCCCCCEEEEcc
Q psy16496 191 RWHRPNAKSILNDIEYTYAERVRVNDSIIVHK 222 (245)
Q Consensus 191 v~~~~~~~~~~~~~~~v~A~~v~~GD~V~v~~ 222 (245)
+.+ .|++|++|++||.|.+..
T Consensus 77 t~~-----------gw~~a~~L~~Gd~v~~~~ 97 (168)
T 2imz_A 77 TEY-----------GWRAAGELRKGDRVAQPR 97 (168)
T ss_dssp ETT-----------EEEEGGGCCTTCEEECCB
T ss_pred Ecc-----------CCEEHHHCCCCCEEEEec
Confidence 886 599999999999999863
No 9
>1am2_A MXE GYRA intein; protein splicing; 2.20A {Mycobacterium xenopi} SCOP: b.86.1.2
Probab=99.79 E-value=3.4e-19 Score=153.16 Aligned_cols=101 Identities=19% Similarity=0.313 Sum_probs=86.2
Q ss_pred ccccCCcEEEeeCCCceeccCCCCCCE--------EEEeeCCCCceeEEEEEEEEecCCCceeceEEEEeCCCCeEEecC
Q psy16496 114 GCFTGDSTVTLDNHKTINITDLNIGDK--------VLTLNTITGEMEYSEVLLFLHRDPNLVHNFVQITTESGSLIKMTP 185 (245)
Q Consensus 114 gCFpgdt~V~l~dG~~k~I~dL~~GDr--------VLa~d~~~G~~~yS~Vi~fl~r~~~~~~~Fv~I~Te~g~~L~lTp 185 (245)
|||+|||.|.|++|..++|+||..||+ |+++|. +|+++++ +..|. ...+.|++|+|++|++|++||
T Consensus 1 GC~~gdT~V~~~dG~~~~I~eL~~G~~~~~~~~v~v~~~d~-~g~~~~~-~~~~~----~g~k~~~~I~T~~G~~i~~T~ 74 (199)
T 1am2_A 1 ASITGDALVALPEGESVRIADIVPGARPNSDNAIDLKVLDR-HGNPVLA-DRLFH----SGEHPVYAVRTVEGLRVTGTA 74 (199)
T ss_dssp CCEETTCEEECSTTCEEEGGGSSTTCCTTEEEEEEEEEECT-TSCEEEE-EEEEE----EEEEEEEEEEETTSCEEEECT
T ss_pred CCcCCCeEEEcCCCCEEEHHHhhCccccccccceEEEEECC-CCCEEEE-EEEEE----CCCceEEEEEECCCCEEEEeC
Confidence 899999999999999999999999998 999998 8999998 54553 245779999999999999999
Q ss_pred CCeeEeecCCCccccCCCcceEeCCCCCCCCEEEEccC
Q psy16496 186 SHLILRWHRPNAKSILNDIEYTYAERVRVNDSIIVHKN 223 (245)
Q Consensus 186 ~Hlifv~~~~~~~~~~~~~~~v~A~~v~~GD~V~v~~g 223 (245)
+||||+.++.+. ...+.|++|++|++||+|++...
T Consensus 75 dH~~lt~~~~~g---~~~~~w~~a~eLk~GD~v~~~~~ 109 (199)
T 1am2_A 75 NHPLLCLVDVAG---VPTLLWKLIDEIKPGDYAVIQRS 109 (199)
T ss_dssp TCEEEEEEEETT---EEEEEEEEGGGCCTTCEEEEEGG
T ss_pred CCEEEEeccCCC---ccceeEEEhhHCCCCCEEEECCc
Confidence 999999972111 01348999999999999999763
No 10
>2jmz_A Hypothetical protein MJ0781; unknown function; NMR {Methanocaldococcus jannaschii} PDB: 2jnq_A
Probab=99.79 E-value=2e-20 Score=158.96 Aligned_cols=123 Identities=20% Similarity=0.209 Sum_probs=101.6
Q ss_pred cCcccccCCcEEEeeCCCceeccCCCC-------------------------CCEEEEeeCCCCceeEEEEEEEEecCCC
Q psy16496 111 KGAGCFTGDSTVTLDNHKTINITDLNI-------------------------GDKVLTLNTITGEMEYSEVLLFLHRDPN 165 (245)
Q Consensus 111 k~ggCFpgdt~V~l~dG~~k~I~dL~~-------------------------GDrVLa~d~~~G~~~yS~Vi~fl~r~~~ 165 (245)
..+|||+++|.|+++||..++|.||.. ++.|++.|+.+|++++++|..++.+.
T Consensus 4 g~~gC~~~dt~V~~~dG~~~~I~elv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~v~s~~~~~gk~~~~~v~~v~~~~-- 81 (186)
T 2jmz_A 4 GHDGALAYDEPIYLSDGNIINIGEFVDKFFKKYKNSIKKEDNGFGWIDIGNENIYIKSFNKLSLIIEDKRILRVWRKK-- 81 (186)
T ss_dssp SCCCCEETTCBCCBTTCCCCBHHHHHHHHHHHSTTTCBCCTTSCCEEECTTTCCEEECCBTTTTBCCEEECCEEEEEC--
T ss_pred CcCceeCCCcEEEEeCCCEEEHHHHHHHHhhhhccccceecCCceEEeecCCCcEEEEEECCCCCEEEEEeEEEEEcC--
Confidence 457999999999999999899988741 45789998779999999999988765
Q ss_pred ceeceEEEEeCCCCeEEecCCCeeEeecCCCccccCCCcceEeCCCCCCCCEEEEccCCccc--------cceecccCCC
Q psy16496 166 LVHNFVQITTESGSLIKMTPSHLILRWHRPNAKSILNDIEYTYAERVRVNDSIIVHKNGKAR--------NGIQRGAPIP 237 (245)
Q Consensus 166 ~~~~Fv~I~Te~g~~L~lTp~Hlifv~~~~~~~~~~~~~~~v~A~~v~~GD~V~v~~g~~~~--------~~~~~G~y~P 237 (245)
....|++|+|++|++|++||+||||+.+ + ....|++|++|++||+|+++.++... .....|.|.|
T Consensus 82 ~~~~~~~I~t~~G~~i~~T~~Hp~~v~~-~------g~~~w~~A~eLk~GD~v~~~~~~~~~~~~V~~v~~~~~~~~vy~ 154 (186)
T 2jmz_A 82 YSGKLIKITTKNRREITLTHDHPVYISK-T------GEVLEINAEMVKVGDYIYIPKNNTINLDEVIKVETVDYNGHIYD 154 (186)
T ss_dssp CCEEEECCCCTTSCCCCBCTTCEEEEEE-T------TEEEEEEGGGCCTTSEEEEECSSSEEEEECCCCCEEEECSCEEE
T ss_pred CCCcEEEEEECCCCEEEEeCCCEEEEeC-C------CeEEEEEhhcCCCCCEEEecccCCccceEEEEEEEeccCCEEEe
Confidence 2456999999999999999999999997 2 24679999999999999999876433 2334577888
Q ss_pred CCCCC
Q psy16496 238 PPRPK 242 (245)
Q Consensus 238 ~~~~~ 242 (245)
||-+.
T Consensus 155 Ltv~g 159 (186)
T 2jmz_A 155 LTVED 159 (186)
T ss_dssp EECTT
T ss_pred eEEcC
Confidence 87654
No 11
>2lcj_A PAB POLC intein; hydrolase; NMR {Pyrococcus abyssi}
Probab=99.78 E-value=5.6e-19 Score=149.84 Aligned_cols=99 Identities=18% Similarity=0.323 Sum_probs=85.9
Q ss_pred cccCCcEEEeeCCCce---eccCCC-------------------CCCEEEEeeCCCCceeEEEEEEEEecCCCceeceEE
Q psy16496 115 CFTGDSTVTLDNHKTI---NITDLN-------------------IGDKVLTLNTITGEMEYSEVLLFLHRDPNLVHNFVQ 172 (245)
Q Consensus 115 CFpgdt~V~l~dG~~k---~I~dL~-------------------~GDrVLa~d~~~G~~~yS~Vi~fl~r~~~~~~~Fv~ 172 (245)
||+|+|.|.+++|+.+ +|++|. .|++|+|+|+++|++++++|..++.+. ..+.|++
T Consensus 1 Cf~~dt~V~l~~~g~~~~~~I~el~~~~~~~~~~~~G~~~~~~~~~~~V~s~d~~~gk~~~~~v~~v~~~~--~~~~~~~ 78 (185)
T 2lcj_A 1 CFPGDTRILVQIDGVPQKITLRELYELFEDERYENMVYVRKKPKREIKVYSIDLETGKVVLTDIEDVIKAP--ATDHLIR 78 (185)
T ss_dssp CEETTSEEEEEETTEEEEEEHHHHGGGBCCEEEETTEEEECSBSSCEEEEEEETTTTEEEEEEEEEEEEEE--CCSCEEE
T ss_pred CcCCCcEEEEECCCEEEEEEHHHHHHhhhcccccccCeEEeccCCCcEEEEEECCCCcEEEEEeeeEEEcC--CCceEEE
Confidence 9999999999954444 999995 357999999559999999999999765 2356999
Q ss_pred EEeCCCCeEEecCCCeeEeecCCCccccCCCcceEeCCCCCCCCEEEEcc
Q psy16496 173 ITTESGSLIKMTPSHLILRWHRPNAKSILNDIEYTYAERVRVNDSIIVHK 222 (245)
Q Consensus 173 I~Te~g~~L~lTp~Hlifv~~~~~~~~~~~~~~~v~A~~v~~GD~V~v~~ 222 (245)
|+|++|++|++||+||||+.+ + ....|++|++|++||+|+++.
T Consensus 79 I~t~~G~~I~~T~~H~~~v~~-~------g~~~~~~A~eLk~GD~v~v~~ 121 (185)
T 2lcj_A 79 FELEDGRSFETTVDHPVLVYE-N------GRFIEKRAFEVKEGDKVLVSE 121 (185)
T ss_dssp EEETTSCEEEECSSSEEEEEE-T------TEEEEEEGGGCCTTCEEEECC
T ss_pred EEECCCCEEEECCCCEEEEec-C------CeEEEEEHHHCCCCCEEEEcc
Confidence 999999999999999999997 2 246899999999999999987
No 12
>2keq_A DNA polymerase III alpha subunit, nucleic acid binding OB-fold tRNA/helicase-type...; intein, DNAE intein, protein splicing; HET: DNA; NMR {Nostoc punctiforme pcc 73102}
Probab=99.47 E-value=5.7e-14 Score=114.40 Aligned_cols=99 Identities=16% Similarity=0.210 Sum_probs=81.4
Q ss_pred cccccCCcEEEeeCCCceeccCC---CCCCEEEEeeCCCCceeEEEEEEEEecCCCceeceEEEEeCCCCeEEecCCCee
Q psy16496 113 AGCFTGDSTVTLDNHKTINITDL---NIGDKVLTLNTITGEMEYSEVLLFLHRDPNLVHNFVQITTESGSLIKMTPSHLI 189 (245)
Q Consensus 113 ggCFpgdt~V~l~dG~~k~I~dL---~~GDrVLa~d~~~G~~~yS~Vi~fl~r~~~~~~~Fv~I~Te~g~~L~lTp~Hli 189 (245)
+|||+|||.|.+++|+.++|+|| +.+..|+++|. +|++..+++..|.++. .+..++|.|++|+.|.+||+|+|
T Consensus 1 s~Clt~dT~V~~~d~g~~~I~eLv~~~~~~~v~s~~~-~g~~~~~~~~~~~~~g---~k~v~ri~t~~G~~i~~T~dH~~ 76 (139)
T 2keq_A 1 GGALSYETEILTVEYGLLPIGKIVEKRIECTVYSVDN-NGNIYTQPVAQWHDRG---EQEVFEYCLEDGSLIRATKDHKF 76 (139)
T ss_dssp CCCEETTCEEEBSSSSEEEHHHHHHTTCCCEEEEECT-TSCEEEEECCEEEECC---SEEEEEEEETTCCEEEEETTCEE
T ss_pred CCCcCCCcEEEecCCCeEEHHHHhcCcCCcEEEEEcC-CCcEEEEeeeEEEEcC---CceEEEEEECCCCEEEEeCCCcE
Confidence 48999999999999778999999 35679999998 8999888888787765 45689999999999999999999
Q ss_pred EeecCCCccccCCCcceEeCCCCCCCCEE
Q psy16496 190 LRWHRPNAKSILNDIEYTYAERVRVNDSI 218 (245)
Q Consensus 190 fv~~~~~~~~~~~~~~~v~A~~v~~GD~V 218 (245)
++.++ ... .....|+.|.+|++||.+
T Consensus 77 lt~~G-~~~--~~~~~Wk~~~eL~~gD~v 102 (139)
T 2keq_A 77 MTVDG-QML--PIDEIFERELDLMRVDNL 102 (139)
T ss_dssp EBTTC-CEE--EHHHHHHHTCCBCCSSCC
T ss_pred EEECC-ccc--cchhhheehhhccCCCcc
Confidence 99871 100 001238999999999973
No 13
>3nzm_A SSP DNAE intein, DNA polymerase III subunit alpha; disulfide bond, transferase; HET: DNA; 1.55A {Synechocystis SP} PDB: 1zd7_A* 1zde_A*
Probab=99.34 E-value=2.1e-13 Score=114.95 Aligned_cols=103 Identities=17% Similarity=0.237 Sum_probs=83.6
Q ss_pred cccccCCcEEEeeCCCceeccCC---CCCCEEEEeeCCCCceeEEEEEEEEecCCCceeceEEEEeCCCCeEEecCCCee
Q psy16496 113 AGCFTGDSTVTLDNHKTINITDL---NIGDKVLTLNTITGEMEYSEVLLFLHRDPNLVHNFVQITTESGSLIKMTPSHLI 189 (245)
Q Consensus 113 ggCFpgdt~V~l~dG~~k~I~dL---~~GDrVLa~d~~~G~~~yS~Vi~fl~r~~~~~~~Fv~I~Te~g~~L~lTp~Hli 189 (245)
.+||+|||.|.++||+.++|+|| +.+..|.++|. +|++..+++..|.++. .+..++|+|++|+.|.+||+|++
T Consensus 8 ~~CltgDT~VltaDgG~v~I~eLv~~~~~~~V~sld~-~gr~~~~~v~~v~~~G---~k~V~rv~t~~Gr~IraT~DHpf 83 (168)
T 3nzm_A 8 PGCLSFGTEILTVEYGPLPIGKIVSEEINCSVYSVDP-EGRVYTQAIAQWHDRG---EQEVLEYELEDGSVIRATSDHRF 83 (168)
T ss_dssp SSCEETTCEEEETTTEEEEHHHHHHTTCCCEEEEECT-TSEEEEEECCEEEEEE---EEEEEEEEETTSCEEEECTTCEE
T ss_pred CcCCCCCCEEEcCCCCEEEHHHHhcCccCcEEEEECC-CCCEEEEeeEEEEecC---CcEEEEEEECCCCEEEECCCCce
Confidence 57999999999999778999999 46889999998 9999999999998764 56799999999999999999999
Q ss_pred EeecCCCccccCCCcceE--eCCCCCCCCEEEEccCC
Q psy16496 190 LRWHRPNAKSILNDIEYT--YAERVRVNDSIIVHKNG 224 (245)
Q Consensus 190 fv~~~~~~~~~~~~~~~v--~A~~v~~GD~V~v~~g~ 224 (245)
++.++ +.. ..+-+ .|-+|+.||.|-...++
T Consensus 84 lT~dG-~~~----pl~ei~~~~~el~~~d~~p~~~~~ 115 (168)
T 3nzm_A 84 LTTDY-QLL----AIEEIFARQLDLLTLENIKQTEEA 115 (168)
T ss_dssp EBTTS-CEE----EHHHHHHHTCCEEEECSCCCSSSC
T ss_pred EeeCC-Cee----EHHHhhhccceecccccCcccccc
Confidence 99872 111 12333 67777778876554443
No 14
>1dfa_A PI-SCEI endonuclease; intein, homing endonuclease, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: b.86.1.2 d.95.2.2 d.95.2.2 PDB: 1lws_A 1lwt_A 1vde_A 1ef0_A 1um2_A 1jva_A
Probab=99.25 E-value=2.2e-12 Score=122.84 Aligned_cols=89 Identities=13% Similarity=0.222 Sum_probs=73.9
Q ss_pred cccCCcEEEeeCCCceeccCCCCCCEEEEeeCCCCceeEEEEEEEEecCCCceeceEEEEeC---------------CCC
Q psy16496 115 CFTGDSTVTLDNHKTINITDLNIGDKVLTLNTITGEMEYSEVLLFLHRDPNLVHNFVQITTE---------------SGS 179 (245)
Q Consensus 115 CFpgdt~V~l~dG~~k~I~dL~~GDrVLa~d~~~G~~~yS~Vi~fl~r~~~~~~~Fv~I~Te---------------~g~ 179 (245)
||+++|.|.|+||+.|+|+||++||+|++.|. . ..+|+.. +.....+|+|.+. +|.
T Consensus 1 C~~~~T~V~~~dG~~k~I~~i~~Gd~v~~~dg---~--~~~v~~~----~~g~~~~y~v~~~~~~~~~~~~~~~~~~~g~ 71 (454)
T 1dfa_A 1 CFAKGTNVLMADGSIECIENIEVGNKVMGKDG---R--PREVIKL----PRGRETMYSVVQKSQHRAHKSDSSREVPELL 71 (454)
T ss_dssp CBCTTCEEEBTTSCEEEGGGCCTTCCBBCTTS---C--BCCBCCC----CCEEEEEEEEEECCSSCCCSCSCTTSCCCCS
T ss_pred CCCCCCeEEeCCCCeeEehhcccCCEEECCCC---C--ceEEEEe----eeccceeEEEEecccccccccccccccCCCc
Confidence 99999999999999999999999999999875 2 1244433 3456789999987 789
Q ss_pred eEEecCCCeeEeecCCCccccCCCcceEeCCCCCCCCEEEE
Q psy16496 180 LIKMTPSHLILRWHRPNAKSILNDIEYTYAERVRVNDSIIV 220 (245)
Q Consensus 180 ~L~lTp~Hlifv~~~~~~~~~~~~~~~v~A~~v~~GD~V~v 220 (245)
.|++||+|++++.+ +...|+.|.++++||++.+
T Consensus 72 ~i~~t~~H~~~~~~--------~~~~~~~~~~l~~gd~~~v 104 (454)
T 1dfa_A 72 KFTCNATHELVVRT--------PRSVRRLSRTIKGVEYFEV 104 (454)
T ss_dssp EEEEETTCEEEEEE--------ECEEESSSSSCCCSSCCCC
T ss_pred EEEECCCCeEEeec--------CCcceeeccccCCCceeeE
Confidence 99999999999876 2357889999999998843
No 15
>1dq3_A Endonuclease; PI-PFUI, intein-encoded, hydrolase; 2.10A {Pyrococcus furiosus} SCOP: b.86.1.2 d.50.3.1 d.95.2.2 d.95.2.2
Probab=98.88 E-value=5.4e-09 Score=99.19 Aligned_cols=100 Identities=17% Similarity=0.270 Sum_probs=78.2
Q ss_pred cccCCcEEEeeCCCcee---ccCC-----CCC------------------CEEEEeeCCCCceeEEEEEEEEecC-CCce
Q psy16496 115 CFTGDSTVTLDNHKTIN---ITDL-----NIG------------------DKVLTLNTITGEMEYSEVLLFLHRD-PNLV 167 (245)
Q Consensus 115 CFpgdt~V~l~dG~~k~---I~dL-----~~G------------------DrVLa~d~~~G~~~yS~Vi~fl~r~-~~~~ 167 (245)
||+++|.|...++..+. ++++ ++| -.|++.|+.+|+.+.+++..++.+. +...
T Consensus 1 C~~~~s~i~~~~~~~~~~~~i~~g~~~~~~i~~~v~~~i~~~g~~~~~~~~~V~s~d~d~~k~i~~kv~~v~~~~~~~~~ 80 (454)
T 1dq3_A 1 CIDGKAKIIFENEGEEHLTTMEEMYERYKHLGEFYDEEYNRWGIDVSNVPIYVKSFDPESKRVVKGKVNVIWKYELGKDV 80 (454)
T ss_dssp CEETTCEEEEESSSCEEEEEHHHHHHHHGGGCEEEETTTTEEEEECTTSCCEEEEEETTTTEEEEEEEEEEEEEEECTTS
T ss_pred CCCCCcEEEEeCCCeeccccccccchhhhhhhhHHHHHHHhcCcEecCCcEEEEEEcCCCCEEEEeEeeEEEEcccCCCC
Confidence 99999999999765332 2222 332 3789999757999999998887643 3322
Q ss_pred eceEEEEeCCCCeEEecCCCeeEeecCCCccccCCCcceEeCCCCCCCCEEEEc
Q psy16496 168 HNFVQITTESGSLIKMTPSHLILRWHRPNAKSILNDIEYTYAERVRVNDSIIVH 221 (245)
Q Consensus 168 ~~Fv~I~Te~g~~L~lTp~Hlifv~~~~~~~~~~~~~~~v~A~~v~~GD~V~v~ 221 (245)
..++|+|++|++|.+||+|++++..+ + ....|+.|.+|++||.|.+.
T Consensus 81 -~~~~i~t~~G~~i~~T~~H~~~~~~~-~-----g~~~~~~a~~l~~gd~i~~~ 127 (454)
T 1dq3_A 81 -TKYEIITNKGTKILTSPWHPFFVLTP-D-----FKIVEKRADELKEGDILIGG 127 (454)
T ss_dssp -CEEEEEETTCCEEEECTTCEEEEECT-T-----SCEEEEETTTCCTTCEECBC
T ss_pred -eEEEEEECCceEEEEcCCCeEEEEeC-C-----CcEEEEEhhhCCCCCEEEec
Confidence 68999999999999999999999962 1 24689999999999999874
No 16
>2cw8_A Endonuclease PI-pkoii; hydrolase; 2.50A {Thermococcus kodakarensis} PDB: 2cw7_A
Probab=98.71 E-value=4.2e-08 Score=95.24 Aligned_cols=97 Identities=19% Similarity=0.253 Sum_probs=74.9
Q ss_pred cCCcEEEee-CCC--ceeccCCC----------------------CCCEEEEeeCCCCceeEEEEEEEEecCCCceeceE
Q psy16496 117 TGDSTVTLD-NHK--TINITDLN----------------------IGDKVLTLNTITGEMEYSEVLLFLHRDPNLVHNFV 171 (245)
Q Consensus 117 pgdt~V~l~-dG~--~k~I~dL~----------------------~GDrVLa~d~~~G~~~yS~Vi~fl~r~~~~~~~Fv 171 (245)
+|||.|.+. ||. ..+|.+|- .+-.|+++|..+++...++|..++.+. .....+
T Consensus 3 ~~dt~i~v~~~g~~~~~~I~elve~~~~~~~~~v~~~~~~e~~~~~~~~v~s~d~~~~~~~~~~v~~v~~~~--~~~~~~ 80 (537)
T 2cw8_A 3 LPEEWLPVLEEGEVHFVRIGELIDRMMEENAGKVKREGETEVLEVSGLEVPSFNRRTNKAELKRVKALIRHD--YSGKVY 80 (537)
T ss_dssp CTTCEEEEEETTEEEEEEHHHHHHHHHHTTGGGCEEETTEEEEECCSEEEEEECTTTCCEEEEEEEEEEEEE--EEEEEE
T ss_pred CCCeEEEEEeCCeEEEEEHHHHHHHHhhhcccceeeeCCEEEEecCCeEEEEEeCCCCeEEEEeeeEEEEEc--CCCcEE
Confidence 678888864 455 34555541 123589999757889999998877443 135699
Q ss_pred EEEeCCCCeEEecCCCeeEeecCCCccccCCCcceEeCCCCCCCCEEEEcc
Q psy16496 172 QITTESGSLIKMTPSHLILRWHRPNAKSILNDIEYTYAERVRVNDSIIVHK 222 (245)
Q Consensus 172 ~I~Te~g~~L~lTp~Hlifv~~~~~~~~~~~~~~~v~A~~v~~GD~V~v~~ 222 (245)
+|+|++|++|++||+|++|+.. + ....|+.|++|++||.|.++.
T Consensus 81 ~i~t~~G~~i~~T~~H~~l~~~-~------g~~~~~~a~elk~GD~v~~~~ 124 (537)
T 2cw8_A 81 TIRLKSGRRIKITSGHSLFSVR-N------GELVEVTGDELKPGDLVAVPR 124 (537)
T ss_dssp EEEETTSCEEEEETTCEEEEEE-T------TEEEEEETTTCCTTCEEEEES
T ss_pred EEEeCCCCEEEEcCCceEEEEE-C------CEEEEEEhhcCCCCCEEEEee
Confidence 9999999999999999999997 2 246899999999999999854
No 17
>1gpp_A Endonuclease PI-SCEI; homing, protein splicing; 1.35A {Saccharomyces cerevisiae} SCOP: b.86.1.2
Probab=98.52 E-value=1.6e-07 Score=82.20 Aligned_cols=72 Identities=14% Similarity=0.256 Sum_probs=55.1
Q ss_pred cccccCCcEEEeeCCCceeccCCCCCCEEEEeeCCCCceeEEEEEEEEecCCCceeceEEEEeC---------------C
Q psy16496 113 AGCFTGDSTVTLDNHKTINITDLNIGDKVLTLNTITGEMEYSEVLLFLHRDPNLVHNFVQITTE---------------S 177 (245)
Q Consensus 113 ggCFpgdt~V~l~dG~~k~I~dL~~GDrVLa~d~~~G~~~yS~Vi~fl~r~~~~~~~Fv~I~Te---------------~ 177 (245)
..||+++|.|+|+||+.|+|++|++||+|++.|+ . ..+|+.. . .....+|+|.-. .
T Consensus 9 ~~~Fa~GT~VLMADGS~K~IEdI~vGD~Vmg~DG-~----pR~V~~l-~---rG~d~mY~I~~kT~hra~~~~~~r~~~~ 79 (237)
T 1gpp_A 9 SACFAKGTNVLMADGSIECIENIEVGNKVMGKDG-R----PREVIKL-P---RGSETMYSVVQKSQHRAHKSDSSREMPE 79 (237)
T ss_dssp CEEECTTCEEEBTTSCEEEGGGCCTTCEEEBTTS-S----EEEEEEC-C---EEEEEEEEEEECC------------CCC
T ss_pred ccccCCCCEEEEeCCCcceeeecccCCEEecCCC-C----cceEEEe-c---cccceeEEEeeccccccccccccccccc
Confidence 3699999999999999999999999999999886 2 2345432 2 234457777642 1
Q ss_pred CCeEEecCCCeeEeec
Q psy16496 178 GSLIKMTPSHLILRWH 193 (245)
Q Consensus 178 g~~L~lTp~Hlifv~~ 193 (245)
...+++|++|-|.+..
T Consensus 80 ~~~ftCna~HkLvLrt 95 (237)
T 1gpp_A 80 LLKFTCNATHELVVRT 95 (237)
T ss_dssp CCEEEEETTCEEEEEE
T ss_pred ccceEEcCCceEEEec
Confidence 2469999999998865
No 18
>1oa8_A Ataxin-1; RNA binding, high mobility group homology, HMG, RNA-binding, dimerization; 1.7A {Homo sapiens} SCOP: b.145.1.1
Probab=97.89 E-value=1.2e-05 Score=65.17 Aligned_cols=107 Identities=12% Similarity=0.086 Sum_probs=68.9
Q ss_pred CcccccCCcEEEeeCCCceeccCCCCCCEEEEeeCCCC-ceeEEEEEEEEecCCCceeceEEEE--eCCCC---eEEecC
Q psy16496 112 GAGCFTGDSTVTLDNHKTINITDLNIGDKVLTLNTITG-EMEYSEVLLFLHRDPNLVHNFVQIT--TESGS---LIKMTP 185 (245)
Q Consensus 112 ~ggCFpgdt~V~l~dG~~k~I~dL~~GDrVLa~d~~~G-~~~yS~Vi~fl~r~~~~~~~Fv~I~--Te~g~---~L~lTp 185 (245)
...||--+|.|.|++|..|.++||+..|-|.+.....+ ++.-+.|. .++.... ..++.|+ +...+ .|.++.
T Consensus 10 ~p~~F~kGS~I~La~G~lkrvEDl~teDFv~sA~~s~~~~L~~stv~-~I~~s~~--~g~v~ltF~~g~~~~~v~~ev~~ 86 (133)
T 1oa8_A 10 LPPYFMKGSIIQLANGELKKVEDLKTEDFIQSAEISNDLKIDSSTVE-RIEDSHS--PGVAVIQFAVGEHRAQVSVEVLV 86 (133)
T ss_dssp CCGGGSTTCEEECTTSCEEEGGGCCHHHHHHHHHHCSSEEEEEEEEE-EEEECSS--TTEEEEEEEETTTTEEEEEEEET
T ss_pred cchhhcCCCEEEecCCceEEeecccHHHHHHhhccCcccccccceEE-EeecCCC--CCeEEEEEeeCCCccEEEEEecC
Confidence 45899999999999999999999999999988776233 33333444 4443222 2255543 33222 589999
Q ss_pred CCeeEeecCCCcc-ccC--CCcceEeCCCCCCCCEEEEc
Q psy16496 186 SHLILRWHRPNAK-SIL--NDIEYTYAERVRVNDSIIVH 221 (245)
Q Consensus 186 ~Hlifv~~~~~~~-~~~--~~~~~v~A~~v~~GD~V~v~ 221 (245)
+||+||....++. .+. ...--+.-.+|++||.-+..
T Consensus 87 ehPFFV~gqGWsSc~P~~T~~~ygL~C~~L~vGDVClsl 125 (133)
T 1oa8_A 87 EYPFFVFGQGWSSCCPERTSQLFDLPCSKLSVGDVCISL 125 (133)
T ss_dssp TCCEEETTTEEEESCHHHHHHHHCCCCEECCTTCEEEEE
T ss_pred CCCcEEcCCcccccCHhHhhHhhCCcceecccCCEEEec
Confidence 9999997632211 000 01112457889999976643
No 19
>1lbu_A Muramoyl-pentapeptide carboxypeptidase; hydrolase, nuclear receptor; 1.80A {Streptomyces albus} SCOP: a.20.1.1 d.65.1.1
Probab=97.84 E-value=9e-06 Score=69.54 Aligned_cols=82 Identities=22% Similarity=0.238 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHhhhCCCceEEEEeeeCCCCCC-----CCCCcccceeeeeeEecCCCcchHHHHHhhhhhcCcceEE-
Q psy16496 17 RLKEKLNTLAISVMNEWPGVRLRVIEGWDEEGHH-----ASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWVY- 90 (245)
Q Consensus 17 ~~~~~l~~l~~~v~~~w~~v~lrv~~~w~~~~~~-----~~~slh~egra~di~~s~~~~~k~g~La~la~~aGfd~V~- 90 (245)
++.+.|..|- +.+...++.|+++|+++.+| +.+|.|+.|+|+||.++..... .|+++|...||+.|.
T Consensus 114 ~l~~~Le~lr----~~~g~~~i~V~sgyR~~~~N~~vgg~~~s~H~~G~A~D~~v~~~~~~---~l~~~~~~~~~~gvg~ 186 (213)
T 1lbu_A 114 VTMWKLQAMR----HAMGDKPITVNGGFRSVTCNSNVGGASNSRHMYGHAADLGAGSQGFC---ALAQAARNHGFTEILG 186 (213)
T ss_dssp HHHHHHHHHH----HHTTSCCCCEEECCCCHHHHHHHTCCTTCGGGGTCEEEECCTTTCHH---HHHHHGGGTTCSEEEC
T ss_pred HHHHHHHHHH----HhcCCCCeEeccccCCHHHccccCCCCCCCCCCceEeeeCCCCcCHH---HHHHHHHHCCCCeEec
Confidence 4444444443 44444588999999998665 4799999999999999655444 458888889999998
Q ss_pred ---Ecccceeeecccccc
Q psy16496 91 ---YESRNHIHCSVKTET 105 (245)
Q Consensus 91 ---~~~r~~ih~~vks~~ 105 (245)
|...+|||+.+....
T Consensus 187 ~~~~~~~~fvH~d~~~~r 204 (213)
T 1lbu_A 187 PGYPGHNDHTHVAGGDGR 204 (213)
T ss_dssp TTSTTCSSSEEEECSSSC
T ss_pred CCcCCCCCeEEeCCCCCC
Confidence 444579999987664
No 20
>2vo9_A EAD500, L-alanyl-D-glutamate peptidase; cell WALL biogenesis/degradation, secreted, cell WALL, hydro; 1.8A {Bacteriophage A500} SCOP: d.65.1.5
Probab=95.70 E-value=0.034 Score=46.58 Aligned_cols=89 Identities=21% Similarity=0.336 Sum_probs=63.0
Q ss_pred hcHHHHHHHHHHHHHHhhhCCCceEEEEeeeCCC--------------CC-----CCCCCcccceeeeeeEecCCCc---
Q psy16496 14 CFQRLKEKLNTLAISVMNEWPGVRLRVIEGWDEE--------------GH-----HASDSLHYEGRAVDITTSDRDS--- 71 (245)
Q Consensus 14 m~~~~~~~l~~l~~~v~~~w~~v~lrv~~~w~~~--------------~~-----~~~~slh~egra~di~~s~~~~--- 71 (245)
|.+.+.++|..|......+ |+.|+|+|||+-. +. ....|-|--|.||||.....|.
T Consensus 33 l~~~aa~al~~m~~~a~~~--Gi~l~i~sgyRs~~~Q~~Ly~~~~~~~g~~~~~a~pg~S~H~~G~AvD~~~~~~dg~~~ 110 (179)
T 2vo9_A 33 MYKITSDKTRNVIKKMAKE--GIYLCVAQGYRSTAEQNALYAQGRTKPGAIVTNAKGGQSNHNYGVAVDLCLYTNDGKDV 110 (179)
T ss_dssp SCHHHHHHHHHHHHHHHTT--TCCEEEEECCCCHHHHHHHHHBTTTBSSCCCCSCCTTSSGGGGTCEEEEEEECTTSSSE
T ss_pred cCHHHHHHHHHHHHHHHHC--CCeEEEEEEECCHHHHHHHHHHhcccCCCceecCCCCCCCCCCcccccccceecCCccc
Confidence 8999999999999988765 8999999999973 11 1356999999999998754332
Q ss_pred ------chHHHHHhhhhhcCcceEEE--cccceeeeccccc
Q psy16496 72 ------SKYGLLARMAVEAGFDWVYY--ESRNHIHCSVKTE 104 (245)
Q Consensus 72 ------~k~g~La~la~~aGfd~V~~--~~r~~ih~~vks~ 104 (245)
..+-.+++.+.+.||.|=.. ..+...|-.+...
T Consensus 111 ~~~~~~~~~~~~~~~a~~~G~~WGG~W~~f~D~pHFEL~~~ 151 (179)
T 2vo9_A 111 IWESTTSRWKKVVAAMKAEGFKWGGDWKSFKDYPHFELCDA 151 (179)
T ss_dssp ECCSSSHHHHHHHHHHHHTTCEEGGGSSSSCCTTEEESSCG
T ss_pred ccCcchHHHHHHHHHHHHcCCeecCcCCCCCCCceEeecCC
Confidence 23345677777888876421 1234556555433
No 21
>1xp2_A EAD500, PLY500, L-alanyl-D-glutamate peptidase; hydrolase; 1.80A {Bacteriophage A500} PDB: 2vo9_A
Probab=95.65 E-value=0.038 Score=46.71 Aligned_cols=89 Identities=20% Similarity=0.325 Sum_probs=64.3
Q ss_pred hcHHHHHHHHHHHHHHhhhCCCceEEEEeeeCCC---------C-----C-----CCCCCcccceeeeeeEecCCC----
Q psy16496 14 CFQRLKEKLNTLAISVMNEWPGVRLRVIEGWDEE---------G-----H-----HASDSLHYEGRAVDITTSDRD---- 70 (245)
Q Consensus 14 m~~~~~~~l~~l~~~v~~~w~~v~lrv~~~w~~~---------~-----~-----~~~~slh~egra~di~~s~~~---- 70 (245)
|.+++.++|..|...... -|+.|.|+|||+-. + . ....|.|--|.|+||....++
T Consensus 33 Ldp~~a~al~~m~~aA~~--~Gi~l~v~sGyRS~e~Q~~Ly~~g~s~~G~~vt~A~pg~S~H~~G~AvDi~~~~~dGk~v 110 (179)
T 1xp2_A 33 MYKITSDKTRNVIKKMAK--EGIYLCVAQGYRSTAEQNALYAQGRTKPGAIVTNAKGGQSNHNYGVAVDLCLYTNDGKDV 110 (179)
T ss_dssp SCHHHHHHHHHHHHHHHT--TTCCEEEEECCCCHHHHHHHHHBTTTBSSCCCCSCCTTSSGGGGTCEEEEEEECTTSSSE
T ss_pred CCHHHHHHHHHHHHHHHH--cCCeEEEEEeecCHHHHHHHHHhhcccCCceeeeCCCCCCCccceeEEEEeeeccCCccc
Confidence 678888888888876644 47899999999983 1 1 114799999999999864321
Q ss_pred -----cchHHHHHhhhhhcCcceEEE--cccceeeeccccc
Q psy16496 71 -----SSKYGLLARMAVEAGFDWVYY--ESRNHIHCSVKTE 104 (245)
Q Consensus 71 -----~~k~g~La~la~~aGfd~V~~--~~r~~ih~~vks~ 104 (245)
.+.|-.+.+++.+.||.|=.. ..+.+.|-.+...
T Consensus 111 ~W~~~~~~~~~v~~~~~~~G~~WGG~W~~~~D~~HFel~~~ 151 (179)
T 1xp2_A 111 IWESTTSRWKKVVAAMKAEGFKWGGDWKSFKDYPHFELCDA 151 (179)
T ss_dssp ECCSSSHHHHHHHHHHHHTTCEEGGGSSSSCCTTEEESSCT
T ss_pred ccCcccHhHHHHHHHHHHhCceeccccCCCCCCCCEEecCC
Confidence 246678899999999988752 2245566666543
No 22
>3qve_A HMG box-containing protein 1; SGC, HMG box transcription factor 1, HBP1, AXH domain, struc genomics consortium, transcription; 2.04A {Homo sapiens} PDB: 1v06_A
Probab=92.00 E-value=0.097 Score=42.34 Aligned_cols=101 Identities=10% Similarity=0.083 Sum_probs=54.6
Q ss_pred cccccCCcEEEeeCCCce---eccCCCCCCEE------EEeeC----CCCceeEEEEEEEEecCCCceeceEEEEeCCC-
Q psy16496 113 AGCFTGDSTVTLDNHKTI---NITDLNIGDKV------LTLNT----ITGEMEYSEVLLFLHRDPNLVHNFVQITTESG- 178 (245)
Q Consensus 113 ggCFpgdt~V~l~dG~~k---~I~dL~~GDrV------La~d~----~~G~~~yS~Vi~fl~r~~~~~~~Fv~I~Te~g- 178 (245)
=.||-.+|.|.+.+|..+ .++||+-+|.- .+... ..|- .++. ++........++.|+-..|
T Consensus 9 w~CFlkGT~i~f~~G~~~~w~~vedl~~~d~~~~~~~~qs~~~k~y~~~gl----klv~-~~e~~~~~~~~v~ltF~~G~ 83 (139)
T 3qve_A 9 WHCFLKGTRLCFHKGSNKEWQDVEDFARAEGCDNEEDLQMGIHKGYGSDGL----KLLS-HEESVSFGESVLKLTFDPGT 83 (139)
T ss_dssp BTTBCTTCEEEESSSSCCSCEEHHHHHHHCC---------CTTTTTTTTCE----EEEE-EEEEEETTEEEEEEEEECSC
T ss_pred hhheecCcEEEEcCCCccceeehhhhccccccchhhhhhhhhhcccCcCCc----EEEE-EEccccCCCcEEEEEEecCC
Confidence 379999999999999955 45555556631 11100 0232 2222 1111112344666664322
Q ss_pred --C---eEEecCCCeeEeecCCCcc-ccC--CCcceEeCCCCCCCCEE
Q psy16496 179 --S---LIKMTPSHLILRWHRPNAK-SIL--NDIEYTYAERVRVNDSI 218 (245)
Q Consensus 179 --~---~L~lTp~Hlifv~~~~~~~-~~~--~~~~~v~A~~v~~GD~V 218 (245)
+ .|.++++||+||....++. .+. ...--+.-.+|++||.-
T Consensus 84 ~~~~~V~le~~~ehPFFV~gqGWsSc~P~~T~~~ygL~C~~L~vGDvC 131 (139)
T 3qve_A 84 VEDGLLTVECKLDHPFYVKNKGWSSFYPSLTVVQHGIPCCEVHIGDVC 131 (139)
T ss_dssp GGGCCEEEEEETTCEEEETTTEEEESSHHHHHHHHCCCCEECCTTCEE
T ss_pred ccceEEEEeccCCCceEEecccceeECcccchhhcCCcceecccCCEe
Confidence 2 5889999999998531110 000 01112347889999954
No 23
>1r44_A D-alanyl-D-alanine dipeptidase; VANX, E.faecium, hydrolase; 2.25A {Enterococcus faecium} SCOP: d.65.1.4
Probab=85.64 E-value=0.6 Score=39.85 Aligned_cols=57 Identities=25% Similarity=0.237 Sum_probs=46.3
Q ss_pred chhhhcHHHHHHHHHHHHHHhhhCCCceEEEEeeeCCCC-------------C---------------------CCCCCc
Q psy16496 10 FLFFCFQRLKEKLNTLAISVMNEWPGVRLRVIEGWDEEG-------------H---------------------HASDSL 55 (245)
Q Consensus 10 ~~r~m~~~~~~~l~~l~~~v~~~w~~v~lrv~~~w~~~~-------------~---------------------~~~~sl 55 (245)
+--++++...++|...+..+..+ |..|+|-+||++.. . -+..|-
T Consensus 38 ~~~~Lr~~aa~aL~~aq~~L~~~--G~~L~I~DaYRP~~avq~f~~w~~~~~~~~~~~~~~p~~~~~~l~~~~yVA~~s~ 115 (202)
T 1r44_A 38 NRIVGTYELAESLLKAKELAATQ--GYGLLLWDGYRPKRAVNCFMQWAAQPENNLTKESYYPNIDRTEMISKGYVASKSS 115 (202)
T ss_dssp SSCEEEHHHHHHHHHHHHHTTSS--SEEEEEEECCCCHHHHHHHHHHHTSCCCCSSHHHHCSSSCTTHHHHTSSSCSSCG
T ss_pred CcEEECHHHHHHHHHHHHHHHhC--CCeEEEEEccCCHHHHHHHHHHHhcchhhhhhhhcCCccCHHHHhhcceecCCCC
Confidence 44578999999999999888654 89999999999951 0 024678
Q ss_pred ccceeeeeeEecC
Q psy16496 56 HYEGRAVDITTSD 68 (245)
Q Consensus 56 h~egra~di~~s~ 68 (245)
|-.|-|||||+-|
T Consensus 116 Hs~G~AVDLTL~d 128 (202)
T 1r44_A 116 HSRGSAIDLTLYR 128 (202)
T ss_dssp GGGTCEEEEEEEE
T ss_pred CCCcEEEEeEEee
Confidence 9999999999966
No 24
>2in0_A Endonuclease PI-MTUI; hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 2l8l_A 2in9_A 2in8_A 3ifj_A 3igd_A
Probab=84.70 E-value=5.2 Score=30.96 Aligned_cols=42 Identities=29% Similarity=0.309 Sum_probs=29.3
Q ss_pred cCCcEEEeeCCCceeccCCCCCCEEEEeeCCCCceeEEEEEEE
Q psy16496 117 TGDSTVTLDNHKTINITDLNIGDKVLTLNTITGEMEYSEVLLF 159 (245)
Q Consensus 117 pgdt~V~l~dG~~k~I~dL~~GDrVLa~d~~~G~~~yS~Vi~f 159 (245)
+++=.+.+.+| +++.++|++||+|+..+.....+.++.|...
T Consensus 70 T~~H~~~t~~g-w~~a~~L~~Gd~v~~~~~~~~~~~~~~V~~I 111 (139)
T 2in0_A 70 TPDHKVLTEYG-WRAAGELRKGDRVAVRDVETGELRYSVIREV 111 (139)
T ss_dssp CTTCEEEETTE-EEEGGGCCTTCEEEEECTTTCCEEEEEEEEE
T ss_pred cCCCeEEecCC-cEEHHHCCCCCEEEeCCCcceeecceEEEEE
Confidence 55556666666 7899999999999998763334455555443
No 25
>2jmz_A Hypothetical protein MJ0781; unknown function; NMR {Methanocaldococcus jannaschii} PDB: 2jnq_A
Probab=82.04 E-value=2.4 Score=34.92 Aligned_cols=65 Identities=17% Similarity=0.227 Sum_probs=40.5
Q ss_pred ccCCcEEEeeCCC---ceeccCCCCCCEEEEeeCCCCceeEEEEEEEEecCCCceeceEEEEeCCCCeEEecCCCeeEee
Q psy16496 116 FTGDSTVTLDNHK---TINITDLNIGDKVLTLNTITGEMEYSEVLLFLHRDPNLVHNFVQITTESGSLIKMTPSHLILRW 192 (245)
Q Consensus 116 Fpgdt~V~l~dG~---~k~I~dL~~GDrVLa~d~~~G~~~yS~Vi~fl~r~~~~~~~Fv~I~Te~g~~L~lTp~Hlifv~ 192 (245)
-+++=.+.+.+|. +++.++|++||+|+..+. +.+.+.+|...--.. ....+| .|++-..|-+|+.
T Consensus 99 ~T~~Hp~~v~~~g~~~w~~A~eLk~GD~v~~~~~--~~~~~~~V~~v~~~~--~~~~vy--------~Ltv~g~Ht~vv~ 166 (186)
T 2jmz_A 99 LTHDHPVYISKTGEVLEINAEMVKVGDYIYIPKN--NTINLDEVIKVETVD--YNGHIY--------DLTVEDNHTYIAG 166 (186)
T ss_dssp BCTTCEEEEEETTEEEEEEGGGCCTTSEEEEECS--SSEEEEECCCCCEEE--ECSCEE--------EEECTTTSEEEES
T ss_pred EeCCCEEEEeCCCeEEEEEhhcCCCCCEEEeccc--CCccceEEEEEEEec--cCCEEE--------eeEEcCceeEEec
Confidence 3677777887764 689999999999999875 555555443321000 001234 3555567777766
No 26
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=81.72 E-value=6.8 Score=30.99 Aligned_cols=57 Identities=16% Similarity=0.080 Sum_probs=37.3
Q ss_pred cCCcEEEeeCC-----CceeccCCCCCCEEEEeeCCCCceeEEEEEEEEecCCCceeceEEEEe
Q psy16496 117 TGDSTVTLDNH-----KTINITDLNIGDKVLTLNTITGEMEYSEVLLFLHRDPNLVHNFVQITT 175 (245)
Q Consensus 117 pgdt~V~l~dG-----~~k~I~dL~~GDrVLa~d~~~G~~~yS~Vi~fl~r~~~~~~~Fv~I~T 175 (245)
+++=.|...+. ..+.-++|++||.|+..+..+|.+..+.|...--. .....|..++.
T Consensus 69 Tp~H~i~v~~~~~~~~~~v~A~~l~~GD~v~~~~~~~~~~~~~~V~~v~~~--~~~G~yaPlT~ 130 (145)
T 1at0_A 69 TPAHLVSVWQPESQKLTFVFADRIEEKNQVLVRDVETGELRPQRVVKVGSV--RSKGVVAPLTR 130 (145)
T ss_dssp CTTCEEEEEETTTTEEEEEEGGGCCTTCEEEEECTTTCCEEEEEEEEEEEE--EEEEEEEEEES
T ss_pred eCCCEEEEecCCCCcEEEEEHHHCcCCCEEEEecCCCCCEEEEEEEEEEEE--EEeeeEccccC
Confidence 44444555554 45789999999999999864577777777765432 23344555554
No 27
>4e2u_A PHO RADA intein; HINT-fold, unknown function; 1.58A {Pyrococcus horikoshii} PDB: 2lqm_A 4e2t_A*
Probab=76.52 E-value=11 Score=30.46 Aligned_cols=43 Identities=16% Similarity=0.107 Sum_probs=28.5
Q ss_pred cCCcEEEeeC-C-CceeccCCCCCCEEEEeeCCCCceeEEEEEEE
Q psy16496 117 TGDSTVTLDN-H-KTINITDLNIGDKVLTLNTITGEMEYSEVLLF 159 (245)
Q Consensus 117 pgdt~V~l~d-G-~~k~I~dL~~GDrVLa~d~~~G~~~yS~Vi~f 159 (245)
+++=.+.+.+ | ..++.++|++||+|+..+..++.+...+|+..
T Consensus 94 T~~Hp~~~~~~~~~w~~a~~L~~Gd~l~~~~gs~~~~~~~~Vv~i 138 (168)
T 4e2u_A 94 TPSHPVLLFRDGLQWVPAAEVKPGDVVVGVRNGELEFHEVSSVRI 138 (168)
T ss_dssp CTTCEEEEESSSEEEEEGGGCCTTCEEEEEETTEEEEEEEEEEEE
T ss_pred CCCCcEEEEcCCCEEEEHHHCCCCCEEEeccCCCccEEEEEEEEE
Confidence 4455555532 4 67899999999999998752345545555543
No 28
>4f78_A D,D-dipeptidase/D,D-carboxypeptidase; center for structural genomics of infectious diseases; HET: MSE; 1.95A {Enterococcus faecalis}
Probab=71.82 E-value=12 Score=32.93 Aligned_cols=78 Identities=19% Similarity=0.271 Sum_probs=56.6
Q ss_pred chhhhcHHHHHHHHHHHHHHhhhCCCceEEEEeeeCCC--------------C--------CCCCCCcccceeeeeeEec
Q psy16496 10 FLFFCFQRLKEKLNTLAISVMNEWPGVRLRVIEGWDEE--------------G--------HHASDSLHYEGRAVDITTS 67 (245)
Q Consensus 10 ~~r~m~~~~~~~l~~l~~~v~~~w~~v~lrv~~~w~~~--------------~--------~~~~~slh~egra~di~~s 67 (245)
....|.++..+.|..|..... .|+.|.|++||+.. | ..+-.|-|--|.|+||...
T Consensus 43 ~~~~L~~~aa~al~~m~~aA~---~g~~L~i~SgYRS~~~Q~~L~~~~~~~~G~~~a~~~~A~PG~SeH~tGlAvDi~~~ 119 (255)
T 4f78_A 43 PNILMKRDVANVLQLIFEKIS---AGNSIVPVSGYRSLEEQTAIYDGSLKDNGEDFTRKYVALPNHSEHQTGLAIDLGLN 119 (255)
T ss_dssp TTCEEEHHHHHHHHHHHHHTT---CTTSEEEEECCCCHHHHHHHHHHHHHHHCHHHHHHHSCCTTSCGGGGTCEEEEEES
T ss_pred CCeEEcHHHHHHHHHHHHHHh---cCCCEEEEeccCCHHHHHHHHHHHHHhcchhhhhheecCCCCCCccceEEEEeccC
Confidence 457899999999999998863 35799999999983 2 2245699999999999874
Q ss_pred CCC----------cchHHHHHhhhhhcCcceEE
Q psy16496 68 DRD----------SSKYGLLARMAVEAGFDWVY 90 (245)
Q Consensus 68 ~~~----------~~k~g~La~la~~aGfd~V~ 90 (245)
+.. ..-+--|.+=|.+-||-..+
T Consensus 120 ~~~~~~~~~~f~~t~~~~WL~~na~~yGFilrY 152 (255)
T 4f78_A 120 KKDIDFIRPDFPYDGICDEFRRAAPDYGFTQRY 152 (255)
T ss_dssp CSSCCSSSCCCCSSHHHHHHHHHGGGTTEEECC
T ss_pred CccccccccccCCCHHHHHHHhcCccCCEEEeC
Confidence 321 12233566666677775443
No 29
>1mi8_A DNAB intein; all beta-strands, hydrolase; 2.00A {Synechocystis SP} SCOP: b.86.1.2
Probab=65.82 E-value=17 Score=28.53 Aligned_cols=28 Identities=7% Similarity=0.098 Sum_probs=22.4
Q ss_pred cCCcEEEeeCCCceeccCCCCCCEEEEee
Q psy16496 117 TGDSTVTLDNHKTINITDLNIGDKVLTLN 145 (245)
Q Consensus 117 pgdt~V~l~dG~~k~I~dL~~GDrVLa~d 145 (245)
+++=.+.+.+| .++.++|++||+|+...
T Consensus 72 T~~H~~~t~~g-w~~a~~L~~GD~v~~~~ 99 (158)
T 1mi8_A 72 TANHRFLTIDG-WKRLDELSLKEHIALPR 99 (158)
T ss_dssp CTTCEEEETTE-EEEGGGCCTTCEEEEEC
T ss_pred eCCceEEeccC-CEEhhhCCCCCEEEecc
Confidence 55666667766 68999999999999864
No 30
>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A
Probab=63.78 E-value=14 Score=29.14 Aligned_cols=18 Identities=17% Similarity=0.285 Sum_probs=14.1
Q ss_pred eCCCCCCCCEEEEccCCc
Q psy16496 208 YAERVRVNDSIIVHKNGK 225 (245)
Q Consensus 208 ~A~~v~~GD~V~v~~g~~ 225 (245)
.|..|++||.|+-.+|..
T Consensus 145 ~aG~L~~GD~Il~Vng~~ 162 (196)
T 3gsl_A 145 KDGRLQIGDKILAVNSVG 162 (196)
T ss_dssp HHCCCCTTCEEEEETTEE
T ss_pred hcCCCCCCCEEEEECCCc
Confidence 355699999999888754
No 31
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=63.68 E-value=34 Score=29.49 Aligned_cols=77 Identities=12% Similarity=0.182 Sum_probs=48.9
Q ss_pred CCCCEEEEeeCCCCceeEEEEEEEEecCCC----ceeceEEEEeCC---CCeEEecCCCeeEeecCCCccccCCCcceEe
Q psy16496 136 NIGDKVLTLNTITGEMEYSEVLLFLHRDPN----LVHNFVQITTES---GSLIKMTPSHLILRWHRPNAKSILNDIEYTY 208 (245)
Q Consensus 136 ~~GDrVLa~d~~~G~~~yS~Vi~fl~r~~~----~~~~Fv~I~Te~---g~~L~lTp~Hlifv~~~~~~~~~~~~~~~v~ 208 (245)
++||.|-|.|...|..---+|+..--+.+. .....|.|..++ ...+.+++...-.. ...++.
T Consensus 4 ki~~~vd~~d~~~Gawfea~i~~v~~~~~~~~~~~d~~~y~v~y~~~~~~~~~~~~~~~irpr-----------ar~~~~ 72 (226)
T 3ask_A 4 KVNEYVDARDTNMGAWFEAQVVRVTRKAPSRPALEEDVIYHVKYDDYPENGVVQMNSRDVRAR-----------ARTIIK 72 (226)
T ss_dssp CTTCEEEEECTTTCCEEEEEEEEEEECC------CCCEEEEEEETTCGGGCEEEEEGGGEEEC-----------CCCBCC
T ss_pred ccCceEEeeecCCCceeEEEEEEEeccccccCCCCCceEEEeecccCcccCceeccccccccc-----------ccccCC
Confidence 799999999976787666666665544322 122455566542 22455655543222 234677
Q ss_pred CCCCCCCCEEEEccC
Q psy16496 209 AERVRVNDSIIVHKN 223 (245)
Q Consensus 209 A~~v~~GD~V~v~~g 223 (245)
-.++++|+.|++.-+
T Consensus 73 ~~~l~~g~~vm~nyn 87 (226)
T 3ask_A 73 WQDLEVGQVVMLNYN 87 (226)
T ss_dssp GGGCCTTCEEEEEEC
T ss_pred ccccccCcEEEEecc
Confidence 889999999998664
No 32
>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}
Probab=59.61 E-value=15 Score=29.58 Aligned_cols=17 Identities=12% Similarity=0.192 Sum_probs=13.4
Q ss_pred CCCCCCCCEEEEccCCc
Q psy16496 209 AERVRVNDSIIVHKNGK 225 (245)
Q Consensus 209 A~~v~~GD~V~v~~g~~ 225 (245)
|..|++||.|+-.+|..
T Consensus 152 aG~L~~GD~Il~VNg~~ 168 (206)
T 3r0h_A 152 DSKLQRGDIITKFNGDA 168 (206)
T ss_dssp HHHCCTTCEEEEETTEE
T ss_pred cCCCCCCCEEEEECCEE
Confidence 44599999999888743
No 33
>1lpl_A Hypothetical 25.4 kDa protein F53F4.3 in chromosome V; structural genomics, CAP-Gly domain, cytoskeleton, tubulin, PSI; 1.77A {Caenorhabditis elegans} SCOP: b.34.10.1 PDB: 1tov_A
Probab=58.70 E-value=26 Score=26.11 Aligned_cols=61 Identities=7% Similarity=0.029 Sum_probs=41.9
Q ss_pred eccCCCCCCEEEEeeCCCCceeEEEEEEEEecCCCceeceEEEEeCCC----------Ce-EEecCCCeeEeec
Q psy16496 131 NITDLNIGDKVLTLNTITGEMEYSEVLLFLHRDPNLVHNFVQITTESG----------SL-IKMTPSHLILRWH 193 (245)
Q Consensus 131 ~I~dL~~GDrVLa~d~~~G~~~yS~Vi~fl~r~~~~~~~Fv~I~Te~g----------~~-L~lTp~Hlifv~~ 193 (245)
.++++++||||....+ |.....-+++|+..-+.....++=|+.+.+ .+ ...-|+|=+|+..
T Consensus 8 ~~~~~~vG~rv~V~~~--g~~~~~GtVryvG~~~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fvr~ 79 (95)
T 1lpl_A 8 AAKNIMVGNRCEVTVG--AQMARRGEVAYVGATKFKEGVWVGVKYDEPVGKNDGSVAGVRYFDCDPKYGGFVRP 79 (95)
T ss_dssp HHHTCCTTCEEEECCT--TSCCEEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEECSCCCTTSEEEECG
T ss_pred hhhcCCCCCEEEEccC--CCCceEEEEEEecccCCCCCEEEEEEccCCCCccCCEECCEEEeEeCCCEEEEEcH
Confidence 4678999999987644 433456688999887777788999998521 22 3445666666543
No 34
>1whg_A Tubulin specific chaperone B; microtubule binding, cytoskeleton associated protein, ckapi, structural genomics; NMR {Mus musculus} SCOP: b.34.10.1
Probab=57.84 E-value=25 Score=27.18 Aligned_cols=44 Identities=5% Similarity=0.101 Sum_probs=33.4
Q ss_pred eccCCCCCCEEEEeeCCCCceeEEEEEEEEecCCCceeceEEEEeC
Q psy16496 131 NITDLNIGDKVLTLNTITGEMEYSEVLLFLHRDPNLVHNFVQITTE 176 (245)
Q Consensus 131 ~I~dL~~GDrVLa~d~~~G~~~yS~Vi~fl~r~~~~~~~Fv~I~Te 176 (245)
.+++|++||||....+ |.....-+|+|+..-+.....++=|+.+
T Consensus 29 ~~~~~~VG~RV~V~~~--g~~~~~GtVryvG~v~~~~G~wvGVElD 72 (113)
T 1whg_A 29 QASAISVGSRCEVRAP--DHSLRRGTVMYVGLTDFKPGYWVGVRYD 72 (113)
T ss_dssp HHTTSCSSCEEEECCS--SSSCEEEEEEEEEECSSSSSEEEEEEES
T ss_pred hhhcCCCCCEEEEecC--CCcceEEEEEEecccCCCCCEEEEEEec
Confidence 5778999999987644 4334556889998776667889999985
No 35
>3hsh_A Endostatin, collagen alpha-1(XVIII) chain; extracellular matrix, basement membrane, collagen trimerization domain, folding, association; 1.80A {Homo sapiens} PDB: 3hon_A
Probab=57.27 E-value=4.4 Score=27.80 Aligned_cols=33 Identities=24% Similarity=0.207 Sum_probs=27.4
Q ss_pred eCCCCCCCCEEEEccCCccc-------cceecccCCCCCC
Q psy16496 208 YAERVRVNDSIIVHKNGKAR-------NGIQRGAPIPPPR 240 (245)
Q Consensus 208 ~A~~v~~GD~V~v~~g~~~~-------~~~~~G~y~P~~~ 240 (245)
.|..+.+|..+|+.+.+.+. +.++.|.+-|+||
T Consensus 17 ~~~~~~eGtL~yv~d~~eLyiRVr~Gwr~v~Lg~~ip~p~ 56 (56)
T 3hsh_A 17 QVHEVPEGWLIFVAEQEELYVRVQNGFRKVQLEARTPLPR 56 (56)
T ss_dssp HGGGSCTTCEEEETTTTEEEEEETTEEEEECEEEEEECCC
T ss_pred hcccCCCeeEEEEEecceEEEEEcCceeeeeecccccCCC
Confidence 47888899999999987754 6788899999987
No 36
>3rdv_A CAP-Gly domain-containing linker protein 1; cytoskeletal protein, CAP Gly protein complex, structural PR; HET: BME; 1.75A {Homo sapiens} PDB: 2qk0_A
Probab=52.59 E-value=46 Score=23.48 Aligned_cols=55 Identities=18% Similarity=0.299 Sum_probs=37.2
Q ss_pred cCCCCCCEEEEeeCCCCceeEEEEEEEEecCCCceeceEEEEeCC----------CCe-EEecCCCeeEeec
Q psy16496 133 TDLNIGDKVLTLNTITGEMEYSEVLLFLHRDPNLVHNFVQITTES----------GSL-IKMTPSHLILRWH 193 (245)
Q Consensus 133 ~dL~~GDrVLa~d~~~G~~~yS~Vi~fl~r~~~~~~~Fv~I~Te~----------g~~-L~lTp~Hlifv~~ 193 (245)
.++++||+|... |. ..-++.|+..-+.+...++=||.+. |.+ ....|+|=+|+..
T Consensus 1 d~~~vG~rv~v~----g~--~~G~VryvG~~~~~~g~w~GVeld~p~GkndGsv~G~rYF~c~p~~G~Fv~~ 66 (72)
T 3rdv_A 1 DDFRVGERVWVN----GN--KPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRP 66 (72)
T ss_dssp -CCCTTCEEEET----TT--EEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEESCCCSTTCEEEECG
T ss_pred CCcccCCEEEEC----CC--CEEEEEEeeeCCCCCceEEEEEECCCCCccCCEECCEEeCccCCCCEEEecH
Confidence 479999999763 32 2367899987777778899999842 111 4556777777653
No 37
>1whl_A Cylindromatosis tumor suppressor CYLD; deubiquitinating enzyme, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=52.55 E-value=48 Score=24.57 Aligned_cols=60 Identities=12% Similarity=0.098 Sum_probs=40.1
Q ss_pred cCCCCCCEEEEeeCCCCceeEEEEEEEEecCC---CceeceEEEEeCCC-------------Ce-EEecCCCeeEeec
Q psy16496 133 TDLNIGDKVLTLNTITGEMEYSEVLLFLHRDP---NLVHNFVQITTESG-------------SL-IKMTPSHLILRWH 193 (245)
Q Consensus 133 ~dL~~GDrVLa~d~~~G~~~yS~Vi~fl~r~~---~~~~~Fv~I~Te~g-------------~~-L~lTp~Hlifv~~ 193 (245)
++|++||||..... .|.....=+++|+..-+ -+...|+=||.+.+ .+ .+.-|+|=+|+..
T Consensus 6 ~~~~VG~rV~V~~~-~~~~~~~GtVryvG~v~~~~~~~G~wvGVElDep~~~~GKnDGsv~G~rYF~C~~~~G~Fv~~ 82 (95)
T 1whl_A 6 SGIDVGCPVKVQLR-SGEEKFPGVVRFRGPLLAERTVSGIFFGVELLEEGRGQGFTDGVYQGKQLFQCDEDCGVFVAL 82 (95)
T ss_dssp CCCCSSCEEEEECS-SSSCEEEEEEEEECCCCSSSSCCCCCEEEEECSSSCSCCSSTTEETTEECCCCCTTTEEEECG
T ss_pred ccCcCCCEEEEecC-CCccceeEEEEEeCccCcccCCCceEEEEEeCCCcccCCCCCCEECCEEEeecCCCeEEEEcH
Confidence 67999999987644 23223456889997664 35678999988533 12 3556777777654
No 38
>4b6m_A Tubulin-specific chaperone, putative; structural protein; 1.59A {Trypanosoma brucei}
Probab=51.24 E-value=34 Score=25.08 Aligned_cols=41 Identities=15% Similarity=0.273 Sum_probs=26.2
Q ss_pred eccCCCCCCEEEEeeCCCCceeEEEEEEEEecCCC-ceeceEEEEeC
Q psy16496 131 NITDLNIGDKVLTLNTITGEMEYSEVLLFLHRDPN-LVHNFVQITTE 176 (245)
Q Consensus 131 ~I~dL~~GDrVLa~d~~~G~~~yS~Vi~fl~r~~~-~~~~Fv~I~Te 176 (245)
.|++|++||||..... ++ .=+++|+..-+. +...++=|+.+
T Consensus 2 ~m~~i~vG~Rv~v~~~--~~---~G~VryvG~v~~~~~G~wvGVelD 43 (84)
T 4b6m_A 2 HMETIHVGDRCLCRPG--DR---LGSVRFVGRVASLKPGYWVGVEFD 43 (84)
T ss_dssp ---CCCTTCEEEETTT--TE---EEEEEEEEECTTSCSSEEEEEEES
T ss_pred CccCcccCCEEEEcCC--Ce---EEEEEEEecCCCCCCCEEEEEEEC
Confidence 3789999999986322 32 357788876333 45678888875
No 39
>1am2_A MXE GYRA intein; protein splicing; 2.20A {Mycobacterium xenopi} SCOP: b.86.1.2
Probab=46.74 E-value=14 Score=30.65 Aligned_cols=29 Identities=14% Similarity=0.034 Sum_probs=23.9
Q ss_pred cCCcEEEeeC---C----CceeccCCCCCCEEEEee
Q psy16496 117 TGDSTVTLDN---H----KTINITDLNIGDKVLTLN 145 (245)
Q Consensus 117 pgdt~V~l~d---G----~~k~I~dL~~GDrVLa~d 145 (245)
+++=.+.+.+ | ++++..+|++||+|+..+
T Consensus 73 T~dH~~lt~~~~~g~~~~~w~~a~eLk~GD~v~~~~ 108 (199)
T 1am2_A 73 TANHPLLCLVDVAGVPTLLWKLIDEIKPGDYAVIQR 108 (199)
T ss_dssp CTTCEEEEEEEETTEEEEEEEEGGGCCTTCEEEEEG
T ss_pred eCCCEEEEeccCCCccceeEEEhhHCCCCCEEEECC
Confidence 6677777776 4 679999999999999865
No 40
>3nx6_A 10KDA chaperonin; bacterial blight, XOO4289, groes, xanthomonas oryzae PV. ORY KACC10331, chaperone; 1.97A {Xanthomonas oryzae PV} SCOP: b.35.1.0
Probab=45.87 E-value=11 Score=28.28 Aligned_cols=25 Identities=32% Similarity=0.377 Sum_probs=18.4
Q ss_pred eeCCCceeccCCCCCCEEEEeeCCCCc
Q psy16496 124 LDNHKTINITDLNIGDKVLTLNTITGE 150 (245)
Q Consensus 124 l~dG~~k~I~dL~~GDrVLa~d~~~G~ 150 (245)
..+|...|| ++++||+||--.- .|.
T Consensus 49 ~~~G~~~p~-~VkvGD~Vl~~ky-~Gt 73 (95)
T 3nx6_A 49 LDNGSLHAP-VVKVGDKVIYGQY-AGS 73 (95)
T ss_dssp CTTSCEECC-SCCTTCEEEECTT-CSE
T ss_pred CCCCCEEcc-ccCCCCEEEECCc-CCe
Confidence 356776777 7999999996554 564
No 41
>2cp2_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1 PDB: 2cp7_A
Probab=45.73 E-value=57 Score=24.32 Aligned_cols=59 Identities=12% Similarity=0.156 Sum_probs=41.2
Q ss_pred ceeccCCCCCCEEEEeeCCCCceeEEEEEEEEecCCCceeceEEEEeCC----------CCe-EEecCCCeeEeec
Q psy16496 129 TINITDLNIGDKVLTLNTITGEMEYSEVLLFLHRDPNLVHNFVQITTES----------GSL-IKMTPSHLILRWH 193 (245)
Q Consensus 129 ~k~I~dL~~GDrVLa~d~~~G~~~yS~Vi~fl~r~~~~~~~Fv~I~Te~----------g~~-L~lTp~Hlifv~~ 193 (245)
...+.++++||+|...+. ..-+++|+..-+.....++=|+.+. |.+ ....|+|=+|+..
T Consensus 13 ~~~~~~~~vG~rV~V~g~------~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fvr~ 82 (95)
T 2cp2_A 13 DDFLGDFVVGERVWVNGV------KPGVVQYLGETQFAPGQWAGVVLDDPVGKNDGAVGGVRYFECPALQGIFTRP 82 (95)
T ss_dssp BSSCCSCCTTCEEEGGGS------CEEEEEEEEECSSSCSEEEEEEESSSCSSBBSEETTEECCCCCTTTEEEECG
T ss_pred hhhhhcCcCCCEEEECCc------eEEEEEEecccCCCCCEEEEEEecCCCCccCCEECCEEecccCCCeEEEEcH
Confidence 357889999999986431 2357788877666677899999852 222 4566777777764
No 42
>2lcj_A PAB POLC intein; hydrolase; NMR {Pyrococcus abyssi}
Probab=44.25 E-value=68 Score=25.86 Aligned_cols=29 Identities=28% Similarity=0.281 Sum_probs=21.6
Q ss_pred cCCcEEEeeCCC---ceeccCCCCCCEEEEee
Q psy16496 117 TGDSTVTLDNHK---TINITDLNIGDKVLTLN 145 (245)
Q Consensus 117 pgdt~V~l~dG~---~k~I~dL~~GDrVLa~d 145 (245)
+++=.+.+.+|. .++.++|++||+|+..+
T Consensus 90 T~~H~~~v~~~g~~~~~~A~eLk~GD~v~v~~ 121 (185)
T 2lcj_A 90 TVDHPVLVYENGRFIEKRAFEVKEGDKVLVSE 121 (185)
T ss_dssp CSSSEEEEEETTEEEEEEGGGCCTTCEEEECC
T ss_pred CCCCEEEEecCCeEEEEEHHHCCCCCEEEEcc
Confidence 455555555553 58999999999999875
No 43
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=42.86 E-value=33 Score=25.35 Aligned_cols=73 Identities=15% Similarity=0.199 Sum_probs=39.0
Q ss_pred ceeccCCCCCCEEEEeeCCCCceeEE-EEEEEEecCCCceeceEEEEe--CCCCeEEecCCCeeEeecCCCccccCCCcc
Q psy16496 129 TINITDLNIGDKVLTLNTITGEMEYS-EVLLFLHRDPNLVHNFVQITT--ESGSLIKMTPSHLILRWHRPNAKSILNDIE 205 (245)
Q Consensus 129 ~k~I~dL~~GDrVLa~d~~~G~~~yS-~Vi~fl~r~~~~~~~Fv~I~T--e~g~~L~lTp~Hlifv~~~~~~~~~~~~~~ 205 (245)
.++|++|++|+.| .+ .|.+.-. ++-.|..++ .....+..+.. +.| +|.+| +|-.. .
T Consensus 7 ~~~I~~L~~g~~v-~i---~~~V~~~~~~~~~~~k~-G~~~~~~~~~l~D~TG-~I~~t----~w~~~-----------~ 65 (115)
T 2k50_A 7 MDTISKLEEGAET-PV---TGRVMKISSPRTFTTRK-GREGKLANVIIADDTG-ELRAV----FWTEN-----------I 65 (115)
T ss_dssp CCCTTTCCTTCEE-EE---EEEEEEECCCEECCCTT-SSCCEEEEEEEEETTE-EEEEE----EETTG-----------G
T ss_pred eEEHHHCCCCCEe-EE---EEEEEECCCceEEEcCC-CCEEEEEEEEEEeCCC-eEEEE----EeCch-----------h
Confidence 4689999999987 22 2443333 333333333 11123444433 444 56665 33111 1
Q ss_pred eEeCCCCCCCCEEEEccC
Q psy16496 206 YTYAERVRVNDSIIVHKN 223 (245)
Q Consensus 206 ~v~A~~v~~GD~V~v~~g 223 (245)
+ ....+++|+.|.+...
T Consensus 66 ~-~~~~l~~G~vv~i~g~ 82 (115)
T 2k50_A 66 K-LLKKFREGDVIRIKDV 82 (115)
T ss_dssp G-GGGTCCTTSEEEEEEE
T ss_pred h-hhhcCCCCCEEEEEee
Confidence 1 2367999999988654
No 44
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=42.79 E-value=40 Score=24.58 Aligned_cols=10 Identities=30% Similarity=0.268 Sum_probs=9.3
Q ss_pred CCCCCCEEEE
Q psy16496 211 RVRVNDSIIV 220 (245)
Q Consensus 211 ~v~~GD~V~v 220 (245)
++++||.|.+
T Consensus 63 ~i~~Gdvv~i 72 (97)
T 3e0e_A 63 EVKKGDIAEV 72 (97)
T ss_dssp CCCTTCEEEE
T ss_pred ccCCCCEEEE
Confidence 7999999998
No 45
>1ixd_A Cylindromatosis tumour-suppressor CYLD; structural genomics, riken structural genomics/proteomics initiative, RSGI, antitumor protein; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=42.68 E-value=54 Score=24.82 Aligned_cols=57 Identities=11% Similarity=0.202 Sum_probs=39.5
Q ss_pred cCCCCCCEEEEeeCCCCceeEEEEEEEEecCCCceeceEEEEe-CC----------CCe-EEecCCCeeEeec
Q psy16496 133 TDLNIGDKVLTLNTITGEMEYSEVLLFLHRDPNLVHNFVQITT-ES----------GSL-IKMTPSHLILRWH 193 (245)
Q Consensus 133 ~dL~~GDrVLa~d~~~G~~~yS~Vi~fl~r~~~~~~~Fv~I~T-e~----------g~~-L~lTp~Hlifv~~ 193 (245)
++|++||+|...+. | ...-+|+|+..-+.....|+=||. +. |.+ .+.-|.|=+|+-.
T Consensus 16 ~~l~VG~RV~V~~~--~--~~~GtVryvG~v~~~~G~wvGVEldDep~GKnDGsv~G~rYF~C~p~~G~FVr~ 84 (104)
T 1ixd_A 16 HGLEVGSLAEVKEN--P--PFYGVIRWIGQPPGLNEVLAGLELEDECAGCTDGTFRGTRYFTCALKKALFVKL 84 (104)
T ss_dssp SCCCTTSEEEECSS--S--CCCEEEEEEECCSSSCCCEEEEEESSCCTTCBSSEETTEECSCCCTTCBEEEEG
T ss_pred cccccCCEEEECcC--C--CcEEEEEEecccCCCCceEEEEEecCCCCCCCCCEECCEEeeecCCCcEEEEcH
Confidence 57999999987643 2 233477888777666788999998 31 222 4566778787764
No 46
>4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis}
Probab=40.96 E-value=12 Score=34.00 Aligned_cols=108 Identities=18% Similarity=0.164 Sum_probs=58.0
Q ss_pred hhhcHHHHHHHHHHHHHHhhhCCCceEEEEeeeCC-----CCCC--CCCCcc-------cceee-----eeeEecC--CC
Q psy16496 12 FFCFQRLKEKLNTLAISVMNEWPGVRLRVIEGWDE-----EGHH--ASDSLH-------YEGRA-----VDITTSD--RD 70 (245)
Q Consensus 12 r~m~~~~~~~l~~l~~~v~~~w~~v~lrv~~~w~~-----~~~~--~~~slh-------~egra-----~di~~s~--~~ 70 (245)
.+-+...-+.|..|+..|+.+=.-+-+.+.-+=+. .+.. ++.+.- +.|.. --+|..+ +-
T Consensus 71 gi~~d~~i~~~k~l~~avh~~G~~i~~QL~H~Gr~~~~~~~g~~~~apS~~~~~~~~~~~~~~~~~~~pr~mt~~eI~~i 150 (358)
T 4a3u_A 71 GIWSDAQVEAWLPITQAVHDAGGLIFAQLWHMGRMVPSNVSGMQPVAPSASQAPGLGHTYDGKKPYDVARALRLDEIPRL 150 (358)
T ss_dssp BCSSHHHHHHHHHHHHHHHHTTCCEEEEEECCGGGCCHHHHSSCCEESSCEECSSEEECSSSEEECCEEEECCGGGHHHH
T ss_pred ccCchHhHHHHHHHHHHHHhcCCceeeccccccccccccccccCCCCCcccccCCcccccCCCCCCccCccCCHHHHHHH
Confidence 35577888899999999987643333333211000 0000 111111 11111 1122222 22
Q ss_pred cchHHHHHhhhhhcCcceEEEcc-cceeeeccccccc-cccccCcccccCC
Q psy16496 71 SSKYGLLARMAVEAGFDWVYYES-RNHIHCSVKTETT-HVNGKGAGCFTGD 119 (245)
Q Consensus 71 ~~k~g~La~la~~aGfd~V~~~~-r~~ih~~vks~~s-~~aak~ggCFpgd 119 (245)
...|+.-|+.|.+||||.|+.+. .+|+-.+--|..+ +-..++||+|-.-
T Consensus 151 i~~F~~AA~rA~~AGFDgVEIH~ahGYLl~QFLSp~tN~RtDeYGGS~eNR 201 (358)
T 4a3u_A 151 LDDYEKAARHALKAGFDGVQIHAANGYLIDEFIRDSTNHRHDEYGGAVENR 201 (358)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHSTTTCCCCSTTSSSHHHH
T ss_pred HHHHHHHHHHHHHcCCCeEeecccCCCcHHhceecccCCeeCCCCCCHHHH
Confidence 45789999999999999999764 4555444444332 2456778876433
No 47
>2imz_A Endonuclease PI-MTUI; N-terminal cysteine sulfinic acid C-terminal aminosuccinimide, hydrolase; 1.70A {Mycobacterium tuberculosis}
Probab=40.76 E-value=17 Score=28.82 Aligned_cols=27 Identities=26% Similarity=0.211 Sum_probs=22.1
Q ss_pred cCCcEEEeeCCCceeccCCCCCCEEEEe
Q psy16496 117 TGDSTVTLDNHKTINITDLNIGDKVLTL 144 (245)
Q Consensus 117 pgdt~V~l~dG~~k~I~dL~~GDrVLa~ 144 (245)
+++=.+.+.+| .+++++|++||+|+..
T Consensus 70 T~~H~~~t~~g-w~~a~~L~~Gd~v~~~ 96 (168)
T 2imz_A 70 TPDHKVLTEYG-WRAAGELRKGDRVAQP 96 (168)
T ss_dssp CTTCEEEETTE-EEEGGGCCTTCEEECC
T ss_pred cCCCCEEEccC-CEEHHHCCCCCEEEEe
Confidence 66667777776 6899999999999865
No 48
>1we3_O CPN10(groes); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: b.35.1.1 PDB: 1wf4_o* 1wnr_A
Probab=40.52 E-value=15 Score=27.83 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=18.8
Q ss_pred eeCCCceeccCCCCCCEEEEeeCCCCc
Q psy16496 124 LDNHKTINITDLNIGDKVLTLNTITGE 150 (245)
Q Consensus 124 l~dG~~k~I~dL~~GDrVLa~d~~~G~ 150 (245)
..+|..+|+ ++++||+||--.- .|.
T Consensus 54 ~~~G~~~p~-~VkvGD~Vlf~ky-~Gt 78 (100)
T 1we3_O 54 LENGQRVPL-EVKEGDIVVFAKY-GGT 78 (100)
T ss_dssp CTTSCEECC-SCCTTCEEEECTT-CSE
T ss_pred CCCCCEEee-ecCCCCEEEECCC-CCe
Confidence 567877776 7999999996554 554
No 49
>4gbu_A NADPH dehydrogenase 1; alpha/beta barrel, enenone reductase, alkene reductase, NADP oxidoreductase, carvone, enenatioselectivity; HET: 0WV 1PE FMN; 1.18A {Saccharomyces pastorianus} PDB: 4ge8_A* 1oya_A* 1oyb_A* 1oyc_A* 3tx9_A* 3rnd_A* 1k02_A* 1k03_A* 1bwk_A* 1bwl_A*
Probab=40.31 E-value=12 Score=34.32 Aligned_cols=48 Identities=17% Similarity=0.133 Sum_probs=33.5
Q ss_pred cchHHHHHhhhhhcCcceEEEcc-cceeeeccccccc-cccccCcccccC
Q psy16496 71 SSKYGLLARMAVEAGFDWVYYES-RNHIHCSVKTETT-HVNGKGAGCFTG 118 (245)
Q Consensus 71 ~~k~g~La~la~~aGfd~V~~~~-r~~ih~~vks~~s-~~aak~ggCFpg 118 (245)
...|+.=|+.|.+||||.|+.+. .+|+-.+--|..+ +-..++||+|-.
T Consensus 171 i~~F~~AA~rA~~AGFDgVEIH~AhGYLl~QFLSp~tN~RtDeYGGS~EN 220 (400)
T 4gbu_A 171 IKEYVQAAKNSIAAGADGVEIHSANGYLLNQFLDPHSNTRTDEYGGSIEN 220 (400)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHH
T ss_pred HHHHHHHHHHHHhcCcCeeeecccccchHHheecCcCCCCccccCCcHHH
Confidence 45889999999999999999765 4655544444433 245677887643
No 50
>1pcq_O Groes protein; chaperone; HET: ADP; 2.81A {Escherichia coli} SCOP: b.35.1.1 PDB: 1gru_O 1aon_O* 1pf9_O* 1svt_O* 1sx4_O* 2c7c_O 2c7d_O
Probab=39.91 E-value=14 Score=27.80 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=18.7
Q ss_pred eeCCCceeccCCCCCCEEEEeeCCCCc
Q psy16496 124 LDNHKTINITDLNIGDKVLTLNTITGE 150 (245)
Q Consensus 124 l~dG~~k~I~dL~~GDrVLa~d~~~G~ 150 (245)
..+|..+|| ++++||+||--....|.
T Consensus 49 ~~~G~~~p~-~VkvGD~Vlf~k~y~Gt 74 (97)
T 1pcq_O 49 LENGEVKPL-DVKVGDIVIFNDGYGVK 74 (97)
T ss_dssp TTSSSCEEC-SCCTTCEEEECCCSSCE
T ss_pred cCCCCEEec-ccCCCCEEEECCccCCe
Confidence 356777777 69999999976622564
No 51
>2e3h_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 1.45A {Homo sapiens} SCOP: b.34.10.1 PDB: 2e4h_A
Probab=38.70 E-value=90 Score=22.93 Aligned_cols=54 Identities=20% Similarity=0.272 Sum_probs=36.6
Q ss_pred CCCCCCEEEEeeCCCCceeEEEEEEEEecCCCceeceEEEEeCCC----------Ce-EEecCCCeeEeec
Q psy16496 134 DLNIGDKVLTLNTITGEMEYSEVLLFLHRDPNLVHNFVQITTESG----------SL-IKMTPSHLILRWH 193 (245)
Q Consensus 134 dL~~GDrVLa~d~~~G~~~yS~Vi~fl~r~~~~~~~Fv~I~Te~g----------~~-L~lTp~Hlifv~~ 193 (245)
||++||+|... |. ..-++.|+..-+.....++=|+.+++ .+ ....|+|=+|+..
T Consensus 1 ~l~vG~rV~V~----g~--~~GtVryvG~~~~~~G~wvGVelDep~GKndGsv~G~rYF~C~p~~G~Fv~~ 65 (90)
T 2e3h_A 1 ELKIGDRVLVG----GT--KAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPV 65 (90)
T ss_dssp CCCTTCEEEET----TT--EEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEETTEESCCCCTTCEEEEEG
T ss_pred CCcCCCEEEEC----CC--CEEEEEEeccCCCCCCeEEEEEECCCCCCCCCEECCEEeeecCCCcEEEEcH
Confidence 68999999872 32 23578888877667788999998531 12 3555666666654
No 52
>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F
Probab=38.61 E-value=20 Score=27.11 Aligned_cols=24 Identities=29% Similarity=0.203 Sum_probs=20.0
Q ss_pred cceEeCCCCCCCCEEEEccCCccc
Q psy16496 204 IEYTYAERVRVNDSIIVHKNGKAR 227 (245)
Q Consensus 204 ~~~v~A~~v~~GD~V~v~~g~~~~ 227 (245)
...+.+++|++||.|.+..|...+
T Consensus 22 ~~~i~~~~l~~GDiv~v~~G~~iP 45 (113)
T 2hc8_A 22 EIAVPVEEVAVGDIVIVRPGEKIP 45 (113)
T ss_dssp EEEEEGGGCCTTCEEEECTTCBCC
T ss_pred EEEEEHHHCCCCCEEEECCCCEEe
Confidence 456899999999999998887654
No 53
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=38.53 E-value=20 Score=32.15 Aligned_cols=48 Identities=19% Similarity=0.153 Sum_probs=29.7
Q ss_pred cchHHHHHhhhhhcCcceEEEcc-cceeeeccccccc-cccccCcccccC
Q psy16496 71 SSKYGLLARMAVEAGFDWVYYES-RNHIHCSVKTETT-HVNGKGAGCFTG 118 (245)
Q Consensus 71 ~~k~g~La~la~~aGfd~V~~~~-r~~ih~~vks~~s-~~aak~ggCFpg 118 (245)
...|+.-|+.|.++|||.|+.+. .+|+-.+--|..+ +-...+||+|-.
T Consensus 143 i~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslen 192 (340)
T 3gr7_A 143 VQAFQNGARRAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPEN 192 (340)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEccccchHHHHcCCCccCcCCCcccCCHHH
Confidence 45788999999999999998653 2333322222322 134566777643
No 54
>1t2w_A Sortase; transpeptidase, beta barrel, hydrolase; 1.80A {Staphylococcus aureus} SCOP: b.100.1.1 PDB: 1t2o_A 1ija_A 2kid_A* 1t2p_A
Probab=37.84 E-value=43 Score=26.09 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=19.9
Q ss_pred ceeccCCCCCCEEEEeeCCCCceeEE
Q psy16496 129 TINITDLNIGDKVLTLNTITGEMEYS 154 (245)
Q Consensus 129 ~k~I~dL~~GDrVLa~d~~~G~~~yS 154 (245)
...+.+|++||.|.-.+. ++..+|.
T Consensus 69 F~~L~~l~~Gd~i~v~~~-~~~~~Y~ 93 (145)
T 1t2w_A 69 FTNLKAAKKGSMVYFKVG-NETRKYK 93 (145)
T ss_dssp TTTGGGCCTTCEEEEEET-TEEEEEE
T ss_pred cCChhhCCCCCEEEEEEC-CEEEEEE
Confidence 346899999999988877 6676775
No 55
>1txq_A Dynactin 1; protein complex, structural protein/protein binding complex; 1.80A {Homo sapiens} SCOP: b.34.10.1 PDB: 2hqh_A 2hkq_B 2hkn_A 2pzo_A 3e2u_A 2hl5_C 2hl3_A 3tq7_P
Probab=37.13 E-value=93 Score=22.93 Aligned_cols=59 Identities=14% Similarity=0.233 Sum_probs=38.9
Q ss_pred eeccCCCCCCEEEEeeCCCCceeEEEEEEEEecCCCceeceEEEEeCC----------CCe-EEecCCCeeEeec
Q psy16496 130 INITDLNIGDKVLTLNTITGEMEYSEVLLFLHRDPNLVHNFVQITTES----------GSL-IKMTPSHLILRWH 193 (245)
Q Consensus 130 k~I~dL~~GDrVLa~d~~~G~~~yS~Vi~fl~r~~~~~~~Fv~I~Te~----------g~~-L~lTp~Hlifv~~ 193 (245)
.+..+|++||+|..... | ..-+++|+..-+.....++=|+.++ |.+ ...-|+|=+|+..
T Consensus 8 ~~~~~~~vG~rv~v~~~--~---~~GtVryvG~~~~~~G~wvGVelDep~GKndGsv~G~rYF~C~~~~G~Fvr~ 77 (93)
T 1txq_A 8 ASARPLRVGSRVEVIGK--G---HRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQ 77 (93)
T ss_dssp ---CCCCTTCEEEETTT--C---CEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEESCCCCTTCEEEECG
T ss_pred cccccCCCCCEEEECCC--C---eEEEEEEeeecCCCCCcEEEEEeCCCCCCCCCEECCEEeeecCCCeEEEEcH
Confidence 46678999999986432 3 2357788887766778899999852 222 4566777777754
No 56
>3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus}
Probab=37.04 E-value=24 Score=32.78 Aligned_cols=46 Identities=15% Similarity=0.044 Sum_probs=31.0
Q ss_pred cchHHHHHhhhhhcCcceEEEccc-ceeeeccccccc-cccccCcccc
Q psy16496 71 SSKYGLLARMAVEAGFDWVYYESR-NHIHCSVKTETT-HVNGKGAGCF 116 (245)
Q Consensus 71 ~~k~g~La~la~~aGfd~V~~~~r-~~ih~~vks~~s-~~aak~ggCF 116 (245)
...|+.-|+.|.+||||.|+.+.- +|+-.+--|..+ +-..++||++
T Consensus 169 i~~F~~AA~rA~~AGfDgVEIH~ahGYLl~QFlSp~~N~RtD~yGGs~ 216 (419)
T 3l5a_A 169 IQQYRDATLRAIKAGFDGVEISIAQRLLIQTFFSTFSNRRTDHYGADS 216 (419)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSTTC
T ss_pred HHHHHHHHHHHHHcCCCEEEECCccchHHHHccCCcccccccCCCCch
Confidence 457889999999999999986642 444333333322 1456678887
No 57
>2cp3_A CLIP-115, KIAA0291; microtubule binding, cytoskeleton associated protein, CYLN2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=36.97 E-value=1e+02 Score=22.34 Aligned_cols=55 Identities=16% Similarity=0.289 Sum_probs=38.9
Q ss_pred cCCCCCCEEEEeeCCCCceeEEEEEEEEecCCCceeceEEEEeCC----------CCe-EEecCCCeeEeec
Q psy16496 133 TDLNIGDKVLTLNTITGEMEYSEVLLFLHRDPNLVHNFVQITTES----------GSL-IKMTPSHLILRWH 193 (245)
Q Consensus 133 ~dL~~GDrVLa~d~~~G~~~yS~Vi~fl~r~~~~~~~Fv~I~Te~----------g~~-L~lTp~Hlifv~~ 193 (245)
++|++||+|... |. ..-+++|+..-+.....++=|+.++ |.+ ....|+|=+|+..
T Consensus 6 ~~~~vG~rv~v~----g~--~~GtVryvG~~~~~~G~wvGVelDep~GkndGsv~G~rYF~c~~~~G~Fv~~ 71 (84)
T 2cp3_A 6 SGLRLGDRVLVG----GT--KTGVVRYVGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCPPKFGLFAPI 71 (84)
T ss_dssp CSCCTTCEEEET----TT--EEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEETTEESSCCCTTTEEEEEG
T ss_pred cccccCCEEEEC----CC--CeEEEEEeccCCCCCCeEEEEEeCCCCCcCCCEECCEEeeecCCCeEEEEcH
Confidence 579999999872 32 2357788877766677899999852 222 4667888888765
No 58
>2cp5_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=36.18 E-value=80 Score=25.31 Aligned_cols=58 Identities=16% Similarity=0.221 Sum_probs=39.1
Q ss_pred eeccCCCCCCEEEEeeCCCCceeEEEEEEEEecCCCceeceEEEEeCCC----------Ce-EEecCCCeeEeec
Q psy16496 130 INITDLNIGDKVLTLNTITGEMEYSEVLLFLHRDPNLVHNFVQITTESG----------SL-IKMTPSHLILRWH 193 (245)
Q Consensus 130 k~I~dL~~GDrVLa~d~~~G~~~yS~Vi~fl~r~~~~~~~Fv~I~Te~g----------~~-L~lTp~Hlifv~~ 193 (245)
..+.+|++||||... |. ..-+++|+..-+.....|+=||.+++ .+ ...-|+|=+|+-.
T Consensus 60 ~~~~~l~VG~RV~V~----G~--~~GtVRyvG~v~~~~G~WvGVELDeP~GKnDGsv~G~rYF~C~p~~GiFVrp 128 (141)
T 2cp5_A 60 EFVDDFRVGERVWVN----GN--KPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRP 128 (141)
T ss_dssp CCCCCCCTTCEEEET----TS--CEEEEEEEEECSSSSSEEEEEEESSSCCSCBSEETTEESSCCCTTTEEEECG
T ss_pred hhhhcCcCCCEEEEC----CC--cEEEEEEeeecCCCCCcEEEEEeCCCCCccCCEECCEEeeecCCCcEEEech
Confidence 467899999999863 31 23577888776666778999998531 12 3455666666653
No 59
>2cp6_A Restin; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=35.26 E-value=88 Score=25.89 Aligned_cols=55 Identities=22% Similarity=0.315 Sum_probs=38.8
Q ss_pred cCCCCCCEEEEeeCCCCceeEEEEEEEEecCCCceeceEEEEeCC----------CCe-EEecCCCeeEeec
Q psy16496 133 TDLNIGDKVLTLNTITGEMEYSEVLLFLHRDPNLVHNFVQITTES----------GSL-IKMTPSHLILRWH 193 (245)
Q Consensus 133 ~dL~~GDrVLa~d~~~G~~~yS~Vi~fl~r~~~~~~~Fv~I~Te~----------g~~-L~lTp~Hlifv~~ 193 (245)
.+|++||+|... |. +.-+|.|+..-+.....|+=||.++ |.+ ...-|.|=+|+..
T Consensus 37 ~~l~VG~RV~V~----g~--~~GtVRyvG~v~~~~G~WvGVELDeP~GKnDGsv~G~rYF~C~p~~GiFVr~ 102 (172)
T 2cp6_A 37 RELKIGDRVLVG----GT--KAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPV 102 (172)
T ss_dssp SCCCSSCEEEET----TT--EEEEEEEEEECSSSSSEEEEEEESSSCCSBSSEETTEECCCCCTTTEEEEEG
T ss_pred ccCccCCEEEEC----CC--ceEEEEEeCcCCCCCCcEEEEEecCCCCccCCEECCEEeeeeCCCeEEEech
Confidence 579999999872 32 3457889877666677899999852 222 4566777777764
No 60
>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens}
Probab=34.61 E-value=24 Score=27.06 Aligned_cols=23 Identities=35% Similarity=0.241 Sum_probs=19.5
Q ss_pred ceEeCCCCCCCCEEEEccCCccc
Q psy16496 205 EYTYAERVRVNDSIIVHKNGKAR 227 (245)
Q Consensus 205 ~~v~A~~v~~GD~V~v~~g~~~~ 227 (245)
..+.+++|++||.|++..|...+
T Consensus 35 ~~v~~~~l~~GDiv~v~~G~~iP 57 (124)
T 2kij_A 35 EQVDVELVQRGDIIKVVPGGKFP 57 (124)
T ss_dssp EEEETTTCCTTCEEECCTTCBCS
T ss_pred EEEeHHHCCCCCEEEECCCCEEE
Confidence 56889999999999998887654
No 61
>1p3h_A 10 kDa chaperonin; beta barrel, acidic cluster, flexible loop, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: b.35.1.1 PDB: 1hx5_A 1lep_A 1p82_A 1p83_A
Probab=34.02 E-value=23 Score=26.75 Aligned_cols=25 Identities=24% Similarity=0.336 Sum_probs=18.0
Q ss_pred eeCC-CceeccCCCCCCEEEEeeCCCCc
Q psy16496 124 LDNH-KTINITDLNIGDKVLTLNTITGE 150 (245)
Q Consensus 124 l~dG-~~k~I~dL~~GDrVLa~d~~~G~ 150 (245)
..+| ..+||+ +++||+||--.- .|.
T Consensus 51 ~~~G~~~~p~~-VkvGD~Vlf~ky-~Gt 76 (99)
T 1p3h_A 51 DEDGEKRIPLD-VAEGDTVIYSKY-GGT 76 (99)
T ss_dssp CSSSSCEECCS-CCTTCEEEEECT-TCE
T ss_pred cCCCCEEEccc-cCCCCEEEECCc-CCe
Confidence 4566 666765 999999996654 564
No 62
>2coz_A CAP350, centrosome-associated protein 350; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=33.80 E-value=90 Score=24.33 Aligned_cols=58 Identities=19% Similarity=0.196 Sum_probs=41.9
Q ss_pred eeccCCCCCCEEEEeeCCCCceeEEEEEEEEecCCCceeceEEEEeCC----------CCe-EEecCCCeeEeec
Q psy16496 130 INITDLNIGDKVLTLNTITGEMEYSEVLLFLHRDPNLVHNFVQITTES----------GSL-IKMTPSHLILRWH 193 (245)
Q Consensus 130 k~I~dL~~GDrVLa~d~~~G~~~yS~Vi~fl~r~~~~~~~Fv~I~Te~----------g~~-L~lTp~Hlifv~~ 193 (245)
-++.+|++||||... |. ..-+++|+..-+-....++=|+.+. |.+ ....|+|=+|+..
T Consensus 27 ~~~~~l~VG~RV~V~----g~--~~GtVRyvG~v~~~~G~WvGVELDeP~GKnDGsv~G~rYF~C~p~~GiFVr~ 95 (122)
T 2coz_A 27 DELFDFHIGDRVLIG----NV--QPGILRFKGETSFAKGFWAGVELDKPEGNNNGTYDGIAYFECKEKHGIFAPP 95 (122)
T ss_dssp CSCSSCCTTEEEEET----TT--EEEEEEEEEECSSSSSEEEEEEESSTTSSBCSEETTEECCCCCSSCEEEECG
T ss_pred cccccCcCCCEEEEC----CC--cEEEEEEecccCCCCCeEEEEEeCCCCCccCCEECCEEeeecCCCcEEEecH
Confidence 367899999999863 31 3457788877766778899999842 223 5677888888875
No 63
>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}
Probab=33.54 E-value=28 Score=31.74 Aligned_cols=106 Identities=16% Similarity=0.098 Sum_probs=55.3
Q ss_pred hhhcHHHHHHHHHHHHHHhhhCCCceEEEEeeeCC------CCCC--CCCCccccee----------e--eeeEecC--C
Q psy16496 12 FFCFQRLKEKLNTLAISVMNEWPGVRLRVIEGWDE------EGHH--ASDSLHYEGR----------A--VDITTSD--R 69 (245)
Q Consensus 12 r~m~~~~~~~l~~l~~~v~~~w~~v~lrv~~~w~~------~~~~--~~~slh~egr----------a--~di~~s~--~ 69 (245)
.+-+...-+.+.+|+..|+.+=.-+-+.+.-+=+. .+.. ++..+-+.|. . --+|..+ .
T Consensus 71 gi~~d~~i~~~k~l~~avH~~G~~i~~QL~H~Gr~~~~~~~~g~~~vapS~i~~~~~~~~~~~~~~~~~pr~mt~~eI~~ 150 (362)
T 4ab4_A 71 GIWNDEQVRGWNNVTKAVHAAGGRIFLQLWHVGRISHPSYLNGELPVAPSAIQPKGHVSLVRPLSDYPTPRALETEEIND 150 (362)
T ss_dssp BCSSHHHHHHHHHHHHHHHHTTCCEEEEEECCTTSCCGGGTTTCCCEESSCCCCSSBCSSCSSCCBCCCCEECCHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHHhcCCEEEEEeccCcccccccccCCCcccCCCCCCCCccccccccccCCCCCCcCCHHHHHH
Confidence 35677888999999999987633233333221110 0000 1111111110 0 1122221 2
Q ss_pred CcchHHHHHhhhhhcCcceEEEcc-cceeeeccccccc-cccccCccccc
Q psy16496 70 DSSKYGLLARMAVEAGFDWVYYES-RNHIHCSVKTETT-HVNGKGAGCFT 117 (245)
Q Consensus 70 ~~~k~g~La~la~~aGfd~V~~~~-r~~ih~~vks~~s-~~aak~ggCFp 117 (245)
-...|+.-|+.|.++|||.|+.+. .+|+-.+--|..+ +-...+||+|-
T Consensus 151 ii~~f~~AA~~a~~aGfDgVEih~a~GYLl~QFLSp~~N~RtD~yGGsle 200 (362)
T 4ab4_A 151 IVEAYRSGAENAKAAGFDGVEIHGANGYLLDQFLQSSTNQRTDRYGGSLE 200 (362)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcCccHHHhhcCCccccccCCCCCchh
Confidence 245788889999999999998654 2443333333322 13456778764
No 64
>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0
Probab=33.34 E-value=28 Score=31.69 Aligned_cols=108 Identities=12% Similarity=0.033 Sum_probs=56.7
Q ss_pred hhhcHHHHHHHHHHHHHHhhhCCCceEEEEeeeCC------CCCC--CCCCcccce----------ee--eeeEecC--C
Q psy16496 12 FFCFQRLKEKLNTLAISVMNEWPGVRLRVIEGWDE------EGHH--ASDSLHYEG----------RA--VDITTSD--R 69 (245)
Q Consensus 12 r~m~~~~~~~l~~l~~~v~~~w~~v~lrv~~~w~~------~~~~--~~~slh~eg----------ra--~di~~s~--~ 69 (245)
.+-+...-+.+.+|+..|+.+=.-+-+.+.-+=+. .+.. ++..+-..| .. --+|..+ .
T Consensus 79 gi~~d~~i~~~k~l~~avH~~G~~i~~QL~H~Gr~~~~~~~~g~~~vapS~i~~~~~~~~~~g~~~~~~pr~mt~~eI~~ 158 (361)
T 3gka_A 79 GIWSPEQVDGWRLVTDAVHAAGGRIFLQLWHVGRVSDPVFLDGALPVAPSAIAPGGHVSLVRPQRPYVTPRALELDEIPG 158 (361)
T ss_dssp BSSSHHHHHHHHHHHHHHHHTTCCEEEEEECCTTSCCGGGTTTCCCEESSSCCCSSBCSSCSSCCBCCCCEECCGGGHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcCCeEEEeeccCCccccccccCCCCcccCCCCCCCCcccccccccCCCCCccCCHHHHHH
Confidence 35678888999999999988633333333221110 0000 111111111 01 1122221 2
Q ss_pred CcchHHHHHhhhhhcCcceEEEcc-cceeeeccccccc-cccccCcccccCC
Q psy16496 70 DSSKYGLLARMAVEAGFDWVYYES-RNHIHCSVKTETT-HVNGKGAGCFTGD 119 (245)
Q Consensus 70 ~~~k~g~La~la~~aGfd~V~~~~-r~~ih~~vks~~s-~~aak~ggCFpgd 119 (245)
-...|+.-|+.|.++|||.|+.+. .+|+-.+--|..+ +-..++||+|-..
T Consensus 159 ii~~f~~AA~~A~~aGfDgVEih~a~GYLl~QFLsp~~N~RtD~yGGslenR 210 (361)
T 3gka_A 159 VVAAFRRGAENARAAGFDGVEVHGANGYLLDQFLQDSANRRTDAYGGSIENR 210 (361)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCcCccHHHhccCcccccccCCCCCChhhc
Confidence 245788899999999999998654 2443333333322 1345677876433
No 65
>3n3f_A Collagen alpha-1(XV) chain; extracellular matrix, basement membrane, collagen trimerization domain, folding, association, chain selection helix; 2.00A {Homo sapiens}
Probab=33.07 E-value=25 Score=23.77 Aligned_cols=32 Identities=25% Similarity=0.218 Sum_probs=25.3
Q ss_pred eCCCCCCCCEEEEccCCccc-------cceecccCCCCC
Q psy16496 208 YAERVRVNDSIIVHKNGKAR-------NGIQRGAPIPPP 239 (245)
Q Consensus 208 ~A~~v~~GD~V~v~~g~~~~-------~~~~~G~y~P~~ 239 (245)
.|.++.+|..+|+.+.+.+. +.++.|-|.|++
T Consensus 15 ~~~~~~eGtL~yv~d~~eLyiRVr~Gwr~v~Lg~~ip~p 53 (54)
T 3n3f_A 15 KAHLVIEGTFIYLRDSTEFFIRVRDGWKKLQLGELIPIP 53 (54)
T ss_dssp TGGGSCTTEEEEETTTTEEEEEETTEEEECCCCCCCCCC
T ss_pred hCccCCCeeEEEEEecceEEEEEcCceeeeeccccccCC
Confidence 47788889999998887653 667888888875
No 66
>2coy_A Dynactin-1; microtubule binding, cytoskeleton associated protein, P150- glued, DAP-150, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=33.06 E-value=1.1e+02 Score=23.52 Aligned_cols=59 Identities=14% Similarity=0.233 Sum_probs=40.2
Q ss_pred eeccCCCCCCEEEEeeCCCCceeEEEEEEEEecCCCceeceEEEEeCC----------CCe-EEecCCCeeEeec
Q psy16496 130 INITDLNIGDKVLTLNTITGEMEYSEVLLFLHRDPNLVHNFVQITTES----------GSL-IKMTPSHLILRWH 193 (245)
Q Consensus 130 k~I~dL~~GDrVLa~d~~~G~~~yS~Vi~fl~r~~~~~~~Fv~I~Te~----------g~~-L~lTp~Hlifv~~ 193 (245)
.+..+|++||+|..... | ..-++.|+..-+.....|+=||.++ |.+ ...-|+|=+|+..
T Consensus 29 ~~~~~l~VG~RV~V~~~--g---~~GtVRyvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~GiFVr~ 98 (112)
T 2coy_A 29 ASARPLRVGSRVEVIGK--G---HRGTVAYVGATLFATGKWVGVILDEAKGKNDGTVQGRKYFTCDEGHGIFVRQ 98 (112)
T ss_dssp CSCCCCCTTCEEEETTT--C---CEEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEECSCCCTTTEEEECG
T ss_pred cccccCCCCCEEEECCC--C---eEEEEEEeeecCCCCCcEEEEEECCCCCCCCCEECCEEeeecCCCeEEEEch
Confidence 35678999999986432 3 2357789887767778899999852 222 4556777777654
No 67
>3fn5_A Sortase A; sortase-fold, hydrolase; HET: EPE; 1.50A {Streptococcus pyogenes serotype M1} PDB: 3fn6_A 3fn7_A
Probab=33.01 E-value=1.2e+02 Score=24.86 Aligned_cols=34 Identities=12% Similarity=0.133 Sum_probs=24.0
Q ss_pred eeccCCCCCCEEEEeeCCCCceeEEEEEEEEecCCC
Q psy16496 130 INITDLNIGDKVLTLNTITGEMEYSEVLLFLHRDPN 165 (245)
Q Consensus 130 k~I~dL~~GDrVLa~d~~~G~~~yS~Vi~fl~r~~~ 165 (245)
..+.+|++||.|.-.+. ++..+|. |.....-+|+
T Consensus 94 ~~L~~lk~GD~I~v~~~-~~~~~Y~-V~~~~vV~p~ 127 (187)
T 3fn5_A 94 SPLERAQNGMSIYLTDK-EKIYEYI-IKDVFTVAPE 127 (187)
T ss_dssp GGGGGCCTTCEEEEECS-SEEEEEE-EEEEEEECTT
T ss_pred cCHhHCcCCCEEEEEEC-CeEEEEE-EeeEEEECcc
Confidence 36999999999998887 6777776 4433333343
No 68
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=32.40 E-value=1.1e+02 Score=23.64 Aligned_cols=42 Identities=21% Similarity=0.464 Sum_probs=32.2
Q ss_pred eccCCCCCCEEEEeeCCCCceeEEEEEEEEecCCCceeceEEEEeCCCC
Q psy16496 131 NITDLNIGDKVLTLNTITGEMEYSEVLLFLHRDPNLVHNFVQITTESGS 179 (245)
Q Consensus 131 ~I~dL~~GDrVLa~d~~~G~~~yS~Vi~fl~r~~~~~~~Fv~I~Te~g~ 179 (245)
.+.++.+|++|.|... +|..--..|+.. +...|+.+.-.+|.
T Consensus 2 ~~~~v~vGq~V~akh~-ngryy~~~V~~~------~~~~~y~V~F~DgS 43 (118)
T 2qqr_A 2 HMQSITAGQKVISKHK-NGRFYQCEVVRL------TTETFYEVNFDDGS 43 (118)
T ss_dssp CSSCCCTTCEEEEECT-TSSEEEEEEEEE------EEEEEEEEEETTSC
T ss_pred CcceeccCCEEEEECC-CCCEEeEEEEEE------eeEEEEEEEcCCCC
Confidence 3688999999999988 888766667664 23569999887664
No 69
>1whh_A Clipr-59; microtubule binding, trans-golgi network, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: b.34.10.1
Probab=32.33 E-value=1.2e+02 Score=22.90 Aligned_cols=57 Identities=18% Similarity=0.266 Sum_probs=39.7
Q ss_pred eccCCCCCCEEEEeeCCCCceeEEEEEEEEecCCCceeceEEEEeCC----------CCe-EEecCCCeeEeec
Q psy16496 131 NITDLNIGDKVLTLNTITGEMEYSEVLLFLHRDPNLVHNFVQITTES----------GSL-IKMTPSHLILRWH 193 (245)
Q Consensus 131 ~I~dL~~GDrVLa~d~~~G~~~yS~Vi~fl~r~~~~~~~Fv~I~Te~----------g~~-L~lTp~Hlifv~~ 193 (245)
...++++||+|... |. ..-++.|+..-+.....++=||.++ |.+ ....|+|=+|+..
T Consensus 22 ~~~~~~VG~RV~V~----g~--~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~GiFvr~ 89 (102)
T 1whh_A 22 EGAKAEVGDQVLVA----GQ--KQGIVRFYGKTDFAPGYWYGIELDQPTGKHDGSVFGVRYFTCAPRHGVFAPA 89 (102)
T ss_dssp SCCSSCTTSEEEET----TT--EEEEEEEEEECSSSSSEEEEEECSSSCCSSSSEETTEECSCCCTTTEEEECG
T ss_pred ccccCcCCCEEEEC----CC--cEEEEEEeeecCCCCCeEEEEEeCCCCCcCCCEECCEEeeecCCCcEEEecH
Confidence 45789999999862 32 2457888877666677899999852 222 4566777777764
No 70
>4g1h_A Sortase family protein; cysteine protease, extracellular, transferase; 1.80A {Streptococcus agalactiae serogroup V}
Probab=32.14 E-value=51 Score=27.94 Aligned_cols=28 Identities=14% Similarity=0.288 Sum_probs=21.9
Q ss_pred ceeccCCCCCCEEEEeeCCCCceeEEEEEE
Q psy16496 129 TINITDLNIGDKVLTLNTITGEMEYSEVLL 158 (245)
Q Consensus 129 ~k~I~dL~~GDrVLa~d~~~G~~~yS~Vi~ 158 (245)
...+.+|++||.|.-.+. +|..+|. |..
T Consensus 124 F~~L~~lk~GD~I~v~~~-~~~~~Y~-V~~ 151 (215)
T 4g1h_A 124 FTDLNKVKKGQIFYVTNI-KETLAYK-VVS 151 (215)
T ss_dssp TTTGGGCCTTCEEEEECS-SCEEEEE-EEE
T ss_pred hccHhhCCCCCEEEEEEC-CEEEEEE-Eee
Confidence 336999999999998887 7877776 444
No 71
>2cp0_A Clipr-59 protein, clipr59; microtubule binding, cytoskeleton associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=31.39 E-value=1.2e+02 Score=22.51 Aligned_cols=57 Identities=19% Similarity=0.257 Sum_probs=40.6
Q ss_pred eccCCCCCCEEEEeeCCCCceeEEEEEEEEecCCCceeceEEEEeCC----------CCe-EEecCCCeeEeec
Q psy16496 131 NITDLNIGDKVLTLNTITGEMEYSEVLLFLHRDPNLVHNFVQITTES----------GSL-IKMTPSHLILRWH 193 (245)
Q Consensus 131 ~I~dL~~GDrVLa~d~~~G~~~yS~Vi~fl~r~~~~~~~Fv~I~Te~----------g~~-L~lTp~Hlifv~~ 193 (245)
...+|++||||... |. ..-+++|+..-+.....++=|+.++ |.+ ....|+|=+|+..
T Consensus 13 ~~~~~~vG~RV~V~----g~--~~GtVryvG~v~~~~G~wvGVelDep~GKnDGsv~G~rYF~C~~~~G~Fv~~ 80 (95)
T 2cp0_A 13 SALGLRLGDRVLLD----GQ--KTGTLRFCGTTEFASGQWVGVELDEPEGKNDGSVGGVRYFICPPKQGLFASV 80 (95)
T ss_dssp HHHTCCTTCEEEET----TT--EEEEEEEEECCSSSCSCEEEEEESSSCCSBCSEETTEECCCCSSSCEEEECG
T ss_pred cccCCCCCCEEEEC----CC--CeEEEEEecccCCCCCcEEEEEecCCCCcCCCEECCEEeeecCCCcEEEEcH
Confidence 56789999999862 32 2357899987766778899999852 222 4667888888764
No 72
>3g66_A Sortase C; pilus, transferase; HET: MES; 1.70A {Streptococcus pneumoniae} PDB: 3g69_A*
Probab=31.35 E-value=43 Score=28.34 Aligned_cols=35 Identities=17% Similarity=0.234 Sum_probs=24.6
Q ss_pred ceeccCCCCCCEEEEeeCCCCceeEEEEEEEEecCCC
Q psy16496 129 TINITDLNIGDKVLTLNTITGEMEYSEVLLFLHRDPN 165 (245)
Q Consensus 129 ~k~I~dL~~GDrVLa~d~~~G~~~yS~Vi~fl~r~~~ 165 (245)
...+.+|++||.|.-.+. +|..+|. |.....-+|+
T Consensus 123 F~~L~~lk~GD~I~v~~~-~~~~~Y~-V~~~~vV~p~ 157 (212)
T 3g66_A 123 FSQLDKMKKGDIFYLHVL-DQVLAYQ-VDQIVTVEPN 157 (212)
T ss_dssp TTTGGGCCTTCEEEEEET-TEEEEEE-EEEEEEECTT
T ss_pred cccHhhCCcCCEEEEEEC-CeEEEEE-EeeEEEECcc
Confidence 347899999999998888 7877776 4443333333
No 73
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=29.79 E-value=98 Score=25.25 Aligned_cols=67 Identities=15% Similarity=0.191 Sum_probs=44.2
Q ss_pred EEEeeCCCceec--------cCCCCCCEEEEeeCCCCceeEEEEEEEEecCCCceeceEEEEeCCCCeEEecCCCeeEee
Q psy16496 121 TVTLDNHKTINI--------TDLNIGDKVLTLNTITGEMEYSEVLLFLHRDPNLVHNFVQITTESGSLIKMTPSHLILRW 192 (245)
Q Consensus 121 ~V~l~dG~~k~I--------~dL~~GDrVLa~d~~~G~~~yS~Vi~fl~r~~~~~~~Fv~I~Te~g~~L~lTp~Hlifv~ 192 (245)
.|...||..+.+ ..|.++..|+|. . +.-.|++=+.--|.+ +.-...|.++| .|.++.++..-.+...
T Consensus 40 ~V~FdDG~~k~v~~~divv~~~LP~~~~V~A~-~--~ddy~s~giI~~h~~-~~~e~~Y~Ve~-~G~t~~~~~~dI~LS~ 114 (156)
T 1ssf_A 40 KLLFDDGYECDVLGKDILLCDPIPLDTEVTAL-S--EDEYFSAGVVKGHRK-ESGELYYSIEK-EGQRKWYKRMAVILSL 114 (156)
T ss_dssp EEECTTSCEEEEETTTEEEECCSCSSEEEEES-S--CTTTCEEEEEEEEEE-ETTEEEEEEEE-TTEEEEECGGGEEEEH
T ss_pred EEEEcCCCeeEeeccceEEEeccCCCcEEEEc-c--CCccccccEEEeecC-CCCcEEEEEEe-CCcEEEEEeeeEEECH
Confidence 377777776654 467889999998 3 445666643334543 23356899999 7777777766666544
No 74
>3mlq_E Transcription-repair coupling factor; tudor, transferase-transcription complex; 2.91A {Thermus thermophilus}
Probab=29.66 E-value=1e+02 Score=21.37 Aligned_cols=45 Identities=9% Similarity=0.068 Sum_probs=19.5
Q ss_pred CCCCCCEEEEeeCCCCceeEEEEEEEEecCCCceeceEEEEeCCCCeEE
Q psy16496 134 DLNIGDKVLTLNTITGEMEYSEVLLFLHRDPNLVHNFVQITTESGSLIK 182 (245)
Q Consensus 134 dL~~GDrVLa~d~~~G~~~yS~Vi~fl~r~~~~~~~Fv~I~Te~g~~L~ 182 (245)
.|++||.|.=.+- |--.|..+..-- - .....+|+.|+..++.+|-
T Consensus 2 ~l~~GD~VVh~~h--GiG~~~gi~~~~-v-~g~~~ey~~l~y~~~~~l~ 46 (71)
T 3mlq_E 2 PHMPGDYLIHPEH--GVGQYLGLETRE-V-LGVKRDYLVLRYKGEGKLY 46 (71)
T ss_dssp ----------------CEEEEEEEEEE-E-TTEEEEEEEEEETTTEEEE
T ss_pred cCCCCCEEEECCC--eeEEEeEEEEEE-e-CCeeEEEEEEEECCCCEEE
Confidence 4789999987774 777777664321 1 2346789999998765543
No 75
>2cow_A Kinesin-like protein KIF13B; microtubule binding, cytoskeleton associated protein, KIAA0639, kinesin-like protein gakin, structural genomics; NMR {Homo sapiens} SCOP: b.34.10.1
Probab=29.57 E-value=1.2e+02 Score=22.80 Aligned_cols=56 Identities=14% Similarity=0.090 Sum_probs=38.2
Q ss_pred ccCCCCCCEEEEeeCCCCceeEEEEEEEEecCCCceeceEEEEeCC----------CCe-EEecCCCeeEeec
Q psy16496 132 ITDLNIGDKVLTLNTITGEMEYSEVLLFLHRDPNLVHNFVQITTES----------GSL-IKMTPSHLILRWH 193 (245)
Q Consensus 132 I~dL~~GDrVLa~d~~~G~~~yS~Vi~fl~r~~~~~~~Fv~I~Te~----------g~~-L~lTp~Hlifv~~ 193 (245)
-.+|++||+|...+. ..-+++|+..-+.....++=|+.++ |.+ ...-|+|=+|+..
T Consensus 21 ~~~l~vG~rV~V~g~------~~GtVryvG~~~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~GiFvr~ 87 (100)
T 2cow_A 21 PEWLREGEFVTVGAH------KTGVVRYVGPADFQEGTWVGVELDLPSGKNDGSIGGKQYFRCNPGYGLLVRP 87 (100)
T ss_dssp CSSCCTTCEEECSSS------CEEEEEEEECCSSSSSCEEEEECSSSCCSCSSEETTEECCCSCTTCCEEECG
T ss_pred CccccCCCEEEECCC------cEEEEEEeeeCCCCCCeEEEEEeCCCCCcCCCEECCEEeeecCCCeEEEecH
Confidence 346899999986321 2357788877766777899999852 222 4556777777764
No 76
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Probab=29.51 E-value=40 Score=30.20 Aligned_cols=37 Identities=16% Similarity=0.272 Sum_probs=27.6
Q ss_pred cccceeeeeeEecCCCcchHHHHHhhhhhcCcceEEE
Q psy16496 55 LHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWVYY 91 (245)
Q Consensus 55 lh~egra~di~~s~~~~~k~g~La~la~~aGfd~V~~ 91 (245)
.|-+|..+=+.+.-++...+...++.+.++|||.|+.
T Consensus 53 ~~~~~~p~~vQL~g~~p~~~~~aA~~a~~~G~D~IeI 89 (350)
T 3b0p_A 53 FRPEEHPIALQLAGSDPKSLAEAARIGEAFGYDEINL 89 (350)
T ss_dssp CCGGGCSEEEEEECSCHHHHHHHHHHHHHTTCSEEEE
T ss_pred cCCCCCeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 4556665555555557788888999999999999963
No 77
>2ln7_A LPXTG-SITE transpeptidase family protein; sortase, sortase family D, enzyme, protein binding; NMR {Bacillus anthracis}
Probab=29.24 E-value=39 Score=26.57 Aligned_cols=26 Identities=12% Similarity=0.146 Sum_probs=21.1
Q ss_pred CceeccCCCCCCEEEEeeCCCCceeEE
Q psy16496 128 KTINITDLNIGDKVLTLNTITGEMEYS 154 (245)
Q Consensus 128 ~~k~I~dL~~GDrVLa~d~~~G~~~yS 154 (245)
-...+.+|++||.|.-.+. ++...|.
T Consensus 69 ~F~~L~~l~~GD~i~v~~~-~~~~~Y~ 94 (147)
T 2ln7_A 69 VFTDLGQLKEKDTLVLEYD-NKTYTYE 94 (147)
T ss_dssp CSSHHHHSSTTCEEEEEET-TEEEEEE
T ss_pred hhhhhhcccCCCEEEEEEC-CcEEEEE
Confidence 3457999999999988776 7777776
No 78
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=28.43 E-value=1.8e+02 Score=22.72 Aligned_cols=43 Identities=14% Similarity=0.059 Sum_probs=27.5
Q ss_pred ccCCCCCCEEEEeeCCCCceeEEEEEEEEecCCCceeceEEEEeC
Q psy16496 132 ITDLNIGDKVLTLNTITGEMEYSEVLLFLHRDPNLVHNFVQITTE 176 (245)
Q Consensus 132 I~dL~~GDrVLa~d~~~G~~~yS~Vi~fl~r~~~~~~~Fv~I~Te 176 (245)
...+.+|++|++... +|.+--..|+..-........ -|-|+..
T Consensus 10 ~~~~~vGe~v~~~~~-d~~~y~AkIl~i~~~~~~~~~-~YyVHY~ 52 (133)
T 1wgs_A 10 EVTVEIGETYLCRRP-DSTWHSAEVIQSRVNDQEGRE-EFYVHYV 52 (133)
T ss_dssp CCCCCTTSEEEEEET-TTEEEEEEEEEEEEETTTTEE-EEEEECT
T ss_pred ccccCCCCEEEEEeC-CCCEEEEEEEEEEeccCCCce-EEEEecc
Confidence 456899999999987 677766777765443322222 3445653
No 79
>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A
Probab=28.27 E-value=62 Score=25.81 Aligned_cols=18 Identities=11% Similarity=0.243 Sum_probs=14.0
Q ss_pred eCCCCCCCCEEEEccCCc
Q psy16496 208 YAERVRVNDSIIVHKNGK 225 (245)
Q Consensus 208 ~A~~v~~GD~V~v~~g~~ 225 (245)
.|..|++||.|+-.+|..
T Consensus 150 ~aG~l~~GD~I~~vng~~ 167 (196)
T 1p1d_A 150 RTGTLELGDKLLAIDNIR 167 (196)
T ss_dssp HTSCCCTTCEEEEETTEE
T ss_pred hcCCCCCCCEEEEECCEE
Confidence 355699999999888744
No 80
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=28.20 E-value=35 Score=27.49 Aligned_cols=11 Identities=36% Similarity=0.990 Sum_probs=9.5
Q ss_pred eEEEEeeeCCC
Q psy16496 37 RLRVIEGWDEE 47 (245)
Q Consensus 37 ~lrv~~~w~~~ 47 (245)
-|+|+|+|-+|
T Consensus 59 Al~~vEcWgdD 69 (141)
T 2okq_A 59 ALRIVECWASD 69 (141)
T ss_dssp CSEEEEEEEEE
T ss_pred Ceeeeeeeccc
Confidence 68999999776
No 81
>2e3i_A Restin; CAP-Gly, cytoplasmic linker, tubulin binding, structural protein; 2.00A {Homo sapiens} SCOP: b.34.10.1
Probab=28.15 E-value=1.4e+02 Score=21.58 Aligned_cols=55 Identities=18% Similarity=0.299 Sum_probs=38.1
Q ss_pred cCCCCCCEEEEeeCCCCceeEEEEEEEEecCCCceeceEEEEeCC----------CCe-EEecCCCeeEeec
Q psy16496 133 TDLNIGDKVLTLNTITGEMEYSEVLLFLHRDPNLVHNFVQITTES----------GSL-IKMTPSHLILRWH 193 (245)
Q Consensus 133 ~dL~~GDrVLa~d~~~G~~~yS~Vi~fl~r~~~~~~~Fv~I~Te~----------g~~-L~lTp~Hlifv~~ 193 (245)
++|++||+|... |. ..-+++|+..-+.....++=|+.+. |.+ ....|.|=+|+..
T Consensus 1 d~~~vG~rv~v~----g~--~~GtVryvG~~~~~~G~wvGVelDep~GKndGsv~G~rYF~c~~~~G~Fvr~ 66 (86)
T 2e3i_A 1 DDFRVGERVWVN----GN--KPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGVRYFQCEPLKGIFTRP 66 (86)
T ss_dssp CCCCTTCEEEET----TT--EEEEEEEEEECSSSSSEEEEEEESSSCSSBSSEETTEESSCCSTTCEEEECG
T ss_pred CCccCCCEEEEC----CC--cEEEEEEeeeCCCCCCcEEEEEeCCCCCccCCEECCEEeeecCCCeEEEEcH
Confidence 478999999862 32 2457888877766678899999852 222 4566777777764
No 82
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*
Probab=27.88 E-value=32 Score=30.98 Aligned_cols=106 Identities=8% Similarity=0.065 Sum_probs=54.7
Q ss_pred hhcHHHHHHHHHHHHHHhhhCCCceEEEEeeeCCC---CCC--CCCCcccc-----eeeeeeEecC--CCcchHHHHHhh
Q psy16496 13 FCFQRLKEKLNTLAISVMNEWPGVRLRVIEGWDEE---GHH--ASDSLHYE-----GRAVDITTSD--RDSSKYGLLARM 80 (245)
Q Consensus 13 ~m~~~~~~~l~~l~~~v~~~w~~v~lrv~~~w~~~---~~~--~~~slh~e-----gra~di~~s~--~~~~k~g~La~l 80 (245)
+.+...-+.+..|+..|+.+=.-+-+.+.-+-+.- +.. ++...-+. -|+ +|..+ .-...|+.-|+.
T Consensus 74 i~~d~~i~~~~~~~~~vh~~G~~i~~QL~H~Gr~~~~~g~~~~apS~i~~~~~~~~p~~--mt~~eI~~ii~~f~~AA~~ 151 (343)
T 3kru_A 74 IWNDEQVKELKKIVDICKANGAVMGIQLAHAGRKCNISYEDVVGPSPIKAGDRYKLPRE--LSVEEIKSIVKAFGEAAKR 151 (343)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTCEEEEEEECCGGGCCCTTSCCEESSSCCSSTTSCCCEE--CCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhcCCceEeeehhhccCccCcchhhccCCCcCCCCccccCchh--cCHHHHHHHHHHHHHHHhh
Confidence 45777888899999999875332223332211100 000 11211111 122 22221 224578899999
Q ss_pred hhhcCcceEEEcc-cceeeeccccccc-cccccCcccccCCc
Q psy16496 81 AVEAGFDWVYYES-RNHIHCSVKTETT-HVNGKGAGCFTGDS 120 (245)
Q Consensus 81 a~~aGfd~V~~~~-r~~ih~~vks~~s-~~aak~ggCFpgdt 120 (245)
|.++|||.|+.+. .+|+-.+.-+..+ +-...+||+|-..+
T Consensus 152 a~~aGfDgVEih~ahGYLl~qFlsp~~N~R~D~yGGslenR~ 193 (343)
T 3kru_A 152 ANLAGYDVVEIHAAHGYLIHEFLSPLSNKRKDEYGNSIENRA 193 (343)
T ss_dssp HHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHT
T ss_pred ccccCCceEEEecccchhHHHhhcccccccchhhccchHhHH
Confidence 9999999998663 3443333333322 13456677764433
No 83
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=27.84 E-value=1.6e+02 Score=20.65 Aligned_cols=52 Identities=15% Similarity=0.211 Sum_probs=33.8
Q ss_pred eccCCCCCCEEEEeeCCCCceeEEEE-EEEEecCCCceeceEEEEeCCCCeEEecCCCe
Q psy16496 131 NITDLNIGDKVLTLNTITGEMEYSEV-LLFLHRDPNLVHNFVQITTESGSLIKMTPSHL 188 (245)
Q Consensus 131 ~I~dL~~GDrVLa~d~~~G~~~yS~V-i~fl~r~~~~~~~Fv~I~Te~g~~L~lTp~Hl 188 (245)
|-..-.+||.|||.=+ |.-.|=|+ |.=++ .....|.+.-.+|..++|+..|.
T Consensus 6 p~~~~~vgd~VmaRW~--Gd~~yYparI~Si~----s~~~~Y~V~fKdgT~e~L~~kDI 58 (66)
T 2l8d_A 6 PNRKYADGEVVMGRWP--GSVLYYEVQVTSYD----DASHLYTVKYKDGTELALKESDI 58 (66)
T ss_dssp SSSSSCSSCEEEEECT--TSSCEEEEEEEEEE----TTTTEEEEEETTSCEEEEEGGGE
T ss_pred CceEeecCCEEEEEcC--CCccceEEEEEEec----cCCceEEEEecCCCEEeechhcc
Confidence 4455679999999875 65555444 33333 22346666666688899988775
No 84
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*
Probab=27.47 E-value=43 Score=29.99 Aligned_cols=47 Identities=17% Similarity=0.147 Sum_probs=29.4
Q ss_pred cchHHHHHhhhhhcCcceEEEccc-ceeeeccccccc-cccccCccccc
Q psy16496 71 SSKYGLLARMAVEAGFDWVYYESR-NHIHCSVKTETT-HVNGKGAGCFT 117 (245)
Q Consensus 71 ~~k~g~La~la~~aGfd~V~~~~r-~~ih~~vks~~s-~~aak~ggCFp 117 (245)
...|+.-|+.|.++|||.|+.+.. +|+-.+--|..+ +-...+||++-
T Consensus 151 i~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGsle 199 (349)
T 3hgj_A 151 LQAFVEGARRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLE 199 (349)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHH
T ss_pred HHHHHHHHHHHHHcCCCEEEECCccchHHHHhcCCcccccCCCCCcCHH
Confidence 457888999999999999986543 443333333322 13345667653
No 85
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=26.44 E-value=1.7e+02 Score=20.42 Aligned_cols=54 Identities=13% Similarity=0.119 Sum_probs=34.9
Q ss_pred cCCCCCCEEEEeeCCCCceeEEEEEEEEecCCCceeceEEEEeCCCCeEEecCCCeeEeec
Q psy16496 133 TDLNIGDKVLTLNTITGEMEYSEVLLFLHRDPNLVHNFVQITTESGSLIKMTPSHLILRWH 193 (245)
Q Consensus 133 ~dL~~GDrVLa~d~~~G~~~yS~Vi~fl~r~~~~~~~Fv~I~Te~g~~L~lTp~Hlifv~~ 193 (245)
...++||+|||.=. +|+.-...|..+. .+ . -|.|.-.+|...+|.+.|+--...
T Consensus 5 ~~~~vGd~vmArW~-D~~yYpA~I~si~-~~----~-~Y~V~F~dG~~etvk~~~ikp~~~ 58 (67)
T 3p8d_A 5 SEFQINEQVLACWS-DCRFYPAKVTAVN-KD----G-TYTVKFYDGVVQTVKHIHVKAFSK 58 (67)
T ss_dssp CCCCTTCEEEEECT-TSCEEEEEEEEEC-TT----S-EEEEEETTSCEEEEEGGGEEECC-
T ss_pred cccccCCEEEEEcC-CCCEeeEEEEEEC-CC----C-eEEEEEeCCceEEEeHHHcccCCc
Confidence 36789999999963 5664444444443 33 1 244554458889999999876664
No 86
>2k1g_A Lipoprotein SPR; solution structure, bacterial lipoprotein, cysteine PEPT NPLC/P60 family, construct optimized, membrane, palmitate; NMR {Escherichia coli}
Probab=26.31 E-value=8.1 Score=30.58 Aligned_cols=20 Identities=30% Similarity=0.368 Sum_probs=15.9
Q ss_pred CCCceeccCCCCCCEEEEee
Q psy16496 126 NHKTINITDLNIGDKVLTLN 145 (245)
Q Consensus 126 dG~~k~I~dL~~GDrVLa~d 145 (245)
.|..++.++|++||.|.-..
T Consensus 59 ~g~~V~~~~l~pGDLvFf~~ 78 (135)
T 2k1g_A 59 MGKSVSRSNLRTGDLVLFRA 78 (135)
T ss_dssp GSEEECGGGCCTTEEEEEEE
T ss_pred CCcEecHHHccCCcEEEECC
Confidence 35667889999999998644
No 87
>1whj_A 1700024K14RIK, riken cDNA 1700024K14; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.34.10.1
Probab=25.99 E-value=2.1e+02 Score=21.46 Aligned_cols=58 Identities=19% Similarity=0.214 Sum_probs=41.3
Q ss_pred eeccCCCCCCEEEEeeCCCCceeEEEEEEEEecCCCceeceEEEEeCC----------CCe-EEecCCCeeEeec
Q psy16496 130 INITDLNIGDKVLTLNTITGEMEYSEVLLFLHRDPNLVHNFVQITTES----------GSL-IKMTPSHLILRWH 193 (245)
Q Consensus 130 k~I~dL~~GDrVLa~d~~~G~~~yS~Vi~fl~r~~~~~~~Fv~I~Te~----------g~~-L~lTp~Hlifv~~ 193 (245)
..+.+|++||+|... |. ..-++.|+..-+.....++=||.++ |.+ ....|.|=+|+..
T Consensus 20 ~~~~~~~vG~RV~V~----g~--~~GtVryvG~v~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fv~~ 88 (102)
T 1whj_A 20 LTSLGLKLGDRVVIA----GQ--KVGTLRFCGTTEFASGQWAGIELDEPEGKNNGSVGRVQYFKCAPKYGIFAPL 88 (102)
T ss_dssp HHHHTCCTTCEEEET----TT--EEEEEEEEEECSSSCSEEEEEEESSSCCSBSSEETTEECCCCCTTTEEEEEG
T ss_pred chhhcCcCCCEEEEC----CC--CEEEEEEeeecCCCCCeEEEEEeCCCCCccCCEECCEEecccCCCeEEEEeH
Confidence 357789999999862 42 2357889887766678899999852 222 4667888888865
No 88
>3o0p_A Sortase family protein; PILI assembly, PILI subunits, transferase ,hydrolas transferase, hydrolase; 1.30A {Streptococcus agalactiae}
Probab=25.22 E-value=32 Score=29.24 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=24.5
Q ss_pred ceeccCCCCCCEEEEeeCCCCceeEEEEEEEEecCCC
Q psy16496 129 TINITDLNIGDKVLTLNTITGEMEYSEVLLFLHRDPN 165 (245)
Q Consensus 129 ~k~I~dL~~GDrVLa~d~~~G~~~yS~Vi~fl~r~~~ 165 (245)
...+.+|++||.|.-.+. ++..+|. |.....-+|.
T Consensus 128 F~~L~~Lk~GD~I~v~~~-~~~~~Y~-V~~~~vV~p~ 162 (216)
T 3o0p_A 128 FSNLKKLKKGDKFYIQNI-KETIAYQ-VDQIKVVTPD 162 (216)
T ss_dssp TTTGGGCCTTCEEEEECS-SCEEEEE-EEEEEEECTT
T ss_pred cccHhhCCcCCEEEEEEC-CEEEEEE-EeeEEEECcc
Confidence 347999999999998887 7877776 4333333333
No 89
>2z0w_A CAP-Gly domain-containing linker protein 4; alternative splicing, ANK repeat, protein binding, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=25.14 E-value=69 Score=23.86 Aligned_cols=59 Identities=17% Similarity=0.198 Sum_probs=37.2
Q ss_pred ceeccCCCCCCEEEEeeCCCCceeEEEEEEEEecCCCceeceEEEEeCC----------CCe-EEecCCCeeEeec
Q psy16496 129 TINITDLNIGDKVLTLNTITGEMEYSEVLLFLHRDPNLVHNFVQITTES----------GSL-IKMTPSHLILRWH 193 (245)
Q Consensus 129 ~k~I~dL~~GDrVLa~d~~~G~~~yS~Vi~fl~r~~~~~~~Fv~I~Te~----------g~~-L~lTp~Hlifv~~ 193 (245)
+.+..++++||+|...+. ..-+++|+..-+.....++=|+.++ |.+ ...-|+|=+|+..
T Consensus 5 ~~~~~~~~vG~rV~V~g~------~~GtVryvG~~~~~~G~wvGVElDep~GKnDGsv~G~rYF~C~p~~G~Fv~~ 74 (96)
T 2z0w_A 5 SSGEGELRLGERVLVVGQ------RLGTIRFFGTTNFAPGYWYGIELEKPHGKNDGSVGGVQYFSCSPRYGIFAPP 74 (96)
T ss_dssp ------CCTTCCCCCCCC------CCEEEEEEECCSSSSSCEEEEEESSSCSSBSSEETTEESSCCCTTSEEEECG
T ss_pred cCCcccCCCCCEEEECCC------cEEEEEEeccCCCCCCeEEEEEeCCCCCCCCCEECCEEeeecCCCeEEEEcH
Confidence 357788999999987432 2257788877666677899999852 222 4567888888765
No 90
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=24.67 E-value=1.4e+02 Score=26.05 Aligned_cols=16 Identities=25% Similarity=0.547 Sum_probs=12.3
Q ss_pred CCCCCCCCEEEEccCC
Q psy16496 209 AERVRVNDSIIVHKNG 224 (245)
Q Consensus 209 A~~v~~GD~V~v~~g~ 224 (245)
+..|++||.|++-...
T Consensus 211 ~~~lr~GDsllvD~ra 226 (251)
T 3m9b_A 211 PRKLRPGDSLLVDTKA 226 (251)
T ss_dssp CCCCCTTCEEEECTTT
T ss_pred cCCCCCCCEEEEeCCC
Confidence 4479999999985543
No 91
>3rcc_A Sortase SRTA; sortase fold, beta-barrel, housekeeping sortase, surface Pro anchoring, PILI anchoring, PILI biogenesis; 3.10A {Streptococcus agalactiae serogroup V}
Probab=24.24 E-value=78 Score=25.21 Aligned_cols=35 Identities=14% Similarity=0.174 Sum_probs=24.7
Q ss_pred ceeccCCCCCCEEEEeeCCCCceeEEEEEEEEecCCC
Q psy16496 129 TINITDLNIGDKVLTLNTITGEMEYSEVLLFLHRDPN 165 (245)
Q Consensus 129 ~k~I~dL~~GDrVLa~d~~~G~~~yS~Vi~fl~r~~~ 165 (245)
...+.+|++||.|.-.+. ++..+|. |...-.-+|+
T Consensus 75 F~~L~~l~~GD~i~v~~~-~~~~~Y~-V~~~~vv~p~ 109 (160)
T 3rcc_A 75 FSPLEHAKKGMKVYLTDK-SKVYTYT-ITEISKVTPE 109 (160)
T ss_dssp CCGGGSCCTTCEECCBCS-SCBCCEE-EEEEEEECTT
T ss_pred ccchhhCccCCEEEEEEC-CEEEEEE-EeeEEEECcc
Confidence 447999999999998887 6887887 4443333333
No 92
>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, LI metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A 2l3r_A*
Probab=24.19 E-value=2.9e+02 Score=22.51 Aligned_cols=78 Identities=10% Similarity=0.154 Sum_probs=49.4
Q ss_pred CCCCEEEEeeCCCCceeEEEEEEEEecCCC-------------ceeceEEEEeCC---CCeEEecCCCeeEeecCCCccc
Q psy16496 136 NIGDKVLTLNTITGEMEYSEVLLFLHRDPN-------------LVHNFVQITTES---GSLIKMTPSHLILRWHRPNAKS 199 (245)
Q Consensus 136 ~~GDrVLa~d~~~G~~~yS~Vi~fl~r~~~-------------~~~~Fv~I~Te~---g~~L~lTp~Hlifv~~~~~~~~ 199 (245)
++||.|=|.|...|...=..|+..--+.+. .....|.|..++ ...+.++..+.=.
T Consensus 12 KinelVDarD~~~GAWFEA~Iv~Vtr~~~~~~~p~~s~~~~~~~edviYhVkyddype~gvv~~~~~~iRp--------- 82 (161)
T 3db3_A 12 KVNEYVDARDTNMGAWFEAQVVRVTRKAPSRDEPCSSTSRPALEEDVIYHVKYDDYPENGVVQMNSRDVRA--------- 82 (161)
T ss_dssp CTTCEEEEECTTTCCEEEEEEEEEEEC-----------------CCEEEEEEESSCGGGCEEEEEGGGEEC---------
T ss_pred EecceeeeeccCCCcceEEEEEEEEecCCCCCCcccccccCCCcCceEEEEEeccCccCCeEecchhcccc---------
Confidence 799999999987888766667664433221 123567777641 1245555444322
Q ss_pred cCCCcceEeCCCCCCCCEEEEccCC
Q psy16496 200 ILNDIEYTYAERVRVNDSIIVHKNG 224 (245)
Q Consensus 200 ~~~~~~~v~A~~v~~GD~V~v~~g~ 224 (245)
+.+..+.=.+|++||.|++-.+-
T Consensus 83 --RARt~l~w~~L~vGqvVMvNYN~ 105 (161)
T 3db3_A 83 --RARTIIKWQDLEVGQVVMLNYNP 105 (161)
T ss_dssp --CCCCBCCGGGCCTTCEEEEEECS
T ss_pred --ceEEeccHHHCCcCcEEEEecCC
Confidence 23455677899999999997653
No 93
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=24.01 E-value=2.2e+02 Score=20.95 Aligned_cols=70 Identities=24% Similarity=0.378 Sum_probs=36.1
Q ss_pred CceeccCCCCCCEEEEeeCCCCcee-EEEEEEEEecCCCceeceEEEEe--CCCCeEEecCCCeeEeecCCCccccCCCc
Q psy16496 128 KTINITDLNIGDKVLTLNTITGEME-YSEVLLFLHRDPNLVHNFVQITT--ESGSLIKMTPSHLILRWHRPNAKSILNDI 204 (245)
Q Consensus 128 ~~k~I~dL~~GDrVLa~d~~~G~~~-yS~Vi~fl~r~~~~~~~Fv~I~T--e~g~~L~lTp~Hlifv~~~~~~~~~~~~~ 204 (245)
...+|+||++|. . ++- .|.+. ..++-.|-.++ ........+.. +.| ++.+| + |+ +
T Consensus 4 ~~~~I~dL~~~~-~--v~v-~g~V~~~~~~r~~~~~~-G~~~~v~~~~l~D~TG-~Irvt----l--W~-~--------- 61 (105)
T 3dm3_A 4 DTYNIGELSPGM-T--ATF-EGEVISALPIKEFKRAD-GSIGKLKSFIVRDETG-SIRVT----L--WD-N--------- 61 (105)
T ss_dssp CEECGGGCCSSE-E--EEE-EEEEEEEEEEEEEECTT-SCEEEEEEEEEEETTE-EEEEE----E--EG-G---------
T ss_pred cceEHHHCCCCC-e--EEE-EEEEEECCCceEEEcCC-CCeeEEEEEEEECCCC-cEEEE----E--EC-c---------
Confidence 457999999993 3 232 35433 23344443323 22222223333 344 56665 2 33 1
Q ss_pred ceEeCC-CCCCCCEEEEccC
Q psy16496 205 EYTYAE-RVRVNDSIIVHKN 223 (245)
Q Consensus 205 ~~v~A~-~v~~GD~V~v~~g 223 (245)
.|. ++++||.|.+ .|
T Consensus 62 ---~a~~~l~~Gdvv~i-~g 77 (105)
T 3dm3_A 62 ---LTDIDVGRGDYVRV-RG 77 (105)
T ss_dssp ---GGGSCCCTTCEEEE-EE
T ss_pred ---ccccccCCCCEEEE-EE
Confidence 122 8999999988 44
No 94
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=23.55 E-value=51 Score=32.31 Aligned_cols=47 Identities=21% Similarity=0.217 Sum_probs=29.7
Q ss_pred cchHHHHHhhhhhcCcceEEEcc-cceeeecccccccc-ccccCccccc
Q psy16496 71 SSKYGLLARMAVEAGFDWVYYES-RNHIHCSVKTETTH-VNGKGAGCFT 117 (245)
Q Consensus 71 ~~k~g~La~la~~aGfd~V~~~~-r~~ih~~vks~~s~-~aak~ggCFp 117 (245)
...|+.-|+.|.++|||.|+.+. .+|+-.+--|..+. -..++||+|-
T Consensus 148 i~~f~~aA~~a~~aGfDgVEih~a~gyLl~qFlsp~~N~R~D~yGGs~e 196 (729)
T 1o94_A 148 QQFYVDAAKRSRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLE 196 (729)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCCcCcCCCCHH
Confidence 35788999999999999998653 34433333333221 3456677763
No 95
>2kw8_A LPXTG-SITE transpeptidase family protein; sortase, SRTA, protein binding; NMR {Bacillus anthracis}
Probab=23.55 E-value=62 Score=25.59 Aligned_cols=34 Identities=29% Similarity=0.465 Sum_probs=23.5
Q ss_pred eeccCCCCCCEEEEeeCCCCceeEEEEEEEEecCCC
Q psy16496 130 INITDLNIGDKVLTLNTITGEMEYSEVLLFLHRDPN 165 (245)
Q Consensus 130 k~I~dL~~GDrVLa~d~~~G~~~yS~Vi~fl~r~~~ 165 (245)
..+.+|++||.|.-.+. ++...|. |.....-+++
T Consensus 84 ~~L~~l~~Gd~i~v~~~-~~~~~Y~-V~~~~~v~~~ 117 (158)
T 2kw8_A 84 SDIASLKKGDKIYLYDN-ENEYEYA-VTGVSEVTPD 117 (158)
T ss_dssp TTGGGCCTTCEEEEECS-SEEEEEE-EEEEEEECSS
T ss_pred hhHhhCCcCCEEEEEEC-CcEEEEE-EEEEEEECcc
Confidence 36899999999998777 6666776 4444333443
No 96
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A
Probab=23.30 E-value=1.2e+02 Score=25.23 Aligned_cols=68 Identities=15% Similarity=0.124 Sum_probs=41.0
Q ss_pred cCcccccCCcEEEeeCCCceeccCCCCCCEEEEeeC---CCCceeEEEEEEEEecCCCceeceEEEEeC-CCC-eEEecC
Q psy16496 111 KGAGCFTGDSTVTLDNHKTINITDLNIGDKVLTLNT---ITGEMEYSEVLLFLHRDPNLVHNFVQITTE-SGS-LIKMTP 185 (245)
Q Consensus 111 k~ggCFpgdt~V~l~dG~~k~I~dL~~GDrVLa~d~---~~G~~~yS~Vi~fl~r~~~~~~~Fv~I~Te-~g~-~L~lTp 185 (245)
--|||+|.+.. .-+++||.|-+.-. ..++.+-..|+.|.. + ...|-+.-.+ +|+ ...++.
T Consensus 32 ~lcGa~p~~~~-----------~~~~~G~~VAakvk~~~~~~~WILa~Vv~~~~-~---~~rYeV~D~d~eg~~~~~~s~ 96 (180)
T 3mea_A 32 PLCGAIPASGD-----------YVARPGDKVAARVKAVDGDEQWILAEVVSYSH-A---TNKYEVDDIDEEGKERHTLSR 96 (180)
T ss_dssp TTBTTCCCCTT-----------CCCCTTCEEEEEEECCC--EEEEEEEEEEEET-T---TTEEEEEECCTTCCEEEEEEG
T ss_pred CccccccCCCC-----------cccCCCCEEEEEcCCCCCCccEEEEEEEEEcC-C---CCEEEEecCCCCCceeEEeCH
Confidence 34577766542 34677888877742 135677788888763 2 1224333332 343 588888
Q ss_pred CCeeEeec
Q psy16496 186 SHLILRWH 193 (245)
Q Consensus 186 ~Hlifv~~ 193 (245)
.+.|.+.+
T Consensus 97 ~~IIPLP~ 104 (180)
T 3mea_A 97 RRVIPLPQ 104 (180)
T ss_dssp GGEEECCS
T ss_pred HHEEECCC
Confidence 99888864
No 97
>3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A*
Probab=23.00 E-value=58 Score=30.24 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=29.7
Q ss_pred cch-HHHHHhhhhhcCcceEEEcc-cceeeeccccccc-cccccCcccc
Q psy16496 71 SSK-YGLLARMAVEAGFDWVYYES-RNHIHCSVKTETT-HVNGKGAGCF 116 (245)
Q Consensus 71 ~~k-~g~La~la~~aGfd~V~~~~-r~~ih~~vks~~s-~~aak~ggCF 116 (245)
... |+.-|+.|.++|||.|+.+. .+|+-.+--|..+ +...++||++
T Consensus 166 i~~~~~~aa~~a~~aGfdgveih~~~GYLl~QFLsp~~N~r~D~YGGs~ 214 (407)
T 3tjl_A 166 VYEAYTNAAQKAMDAGFDYIELHAAHGYLLDQFLQPCTNQRTDEYGGSI 214 (407)
T ss_dssp HHTHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSH
T ss_pred HHHHHHHHHHHHHHhCCCeEEECCccchHHHHhcCccccccCCcCCCCh
Confidence 346 88889999999999998664 2444333333322 1445667765
No 98
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*
Probab=22.90 E-value=33 Score=30.91 Aligned_cols=47 Identities=23% Similarity=0.340 Sum_probs=29.7
Q ss_pred cchHHHHHhhhhhcCcceEEEccc-ceeeeccccccc-cccccCccccc
Q psy16496 71 SSKYGLLARMAVEAGFDWVYYESR-NHIHCSVKTETT-HVNGKGAGCFT 117 (245)
Q Consensus 71 ~~k~g~La~la~~aGfd~V~~~~r-~~ih~~vks~~s-~~aak~ggCFp 117 (245)
...|+.-|+.|.++|||.|+.+.- +|+-.+.-|..+ +-...+||+|-
T Consensus 157 i~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGsle 205 (363)
T 3l5l_A 157 KQDFVDAARRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGSFD 205 (363)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEccccchHHHHccCCCcCCCCcccCcCHH
Confidence 457888899999999999986642 444322223222 13456677763
No 99
>4g1j_A Sortase family protein; cysteine protease, extracellular, transferase; 1.75A {Streptococcus agalactiae serogroup V} PDB: 3tb7_A 3rbi_A 3rbk_A 3tbe_A 3rbj_A
Probab=22.56 E-value=37 Score=28.97 Aligned_cols=35 Identities=20% Similarity=0.382 Sum_probs=24.4
Q ss_pred ceeccCCCCCCEEEEeeCCCCceeEEEEEEEEecCCC
Q psy16496 129 TINITDLNIGDKVLTLNTITGEMEYSEVLLFLHRDPN 165 (245)
Q Consensus 129 ~k~I~dL~~GDrVLa~d~~~G~~~yS~Vi~fl~r~~~ 165 (245)
...+.+|++||.|.-.+. +|..+|. |.....-+|+
T Consensus 131 F~~L~~Lk~GD~I~v~~~-~~~~~Y~-V~~~~vV~p~ 165 (222)
T 4g1j_A 131 FTNLDKVTVGDRFYIEHI-GGKIAYQ-VDQIKVIAPD 165 (222)
T ss_dssp TGGGGGCCTTCEEEEEET-TEEEEEE-EEEEEEECTT
T ss_pred hccHhhCccCCEEEEEEC-CEEEEEE-EeeEEEECcc
Confidence 346999999999998887 7777776 4433333333
No 100
>3r8n_P 30S ribosomal protein S16; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 1p6g_P 1p87_P* 1vs7_P* 2avy_P 2aw7_P 1vs5_P 2i2u_P 2i2p_P* 2qan_P* 2qb9_P* 2qbb_P* 2qbd_P 2qbf_P 2qbh_P* 2qbj_P* 2qou_P* 2qow_P* 2qoy_P* 2qp0_P* 2vho_P ...
Probab=22.43 E-value=50 Score=24.10 Aligned_cols=16 Identities=19% Similarity=-0.118 Sum_probs=12.0
Q ss_pred cceecccCCCCCCCCC
Q psy16496 228 NGIQRGAPIPPPRPKP 243 (245)
Q Consensus 228 ~~~~~G~y~P~~~~~~ 243 (245)
-..+-|+|.|++.+.+
T Consensus 32 ~IE~lG~YnP~~~~~~ 47 (82)
T 3r8n_P 32 FIERVGFFNPIASEKE 47 (82)
T ss_dssp EEEEEEEECTTCCSSS
T ss_pred ceeeeeEEcCCCCCCc
Confidence 3467899999987643
No 101
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=21.60 E-value=3.6e+02 Score=22.93 Aligned_cols=72 Identities=14% Similarity=0.277 Sum_probs=49.9
Q ss_pred CCCCCCEEEEeeCCCCceeEEEEEEEEecCCCceeceEEEEeCCCCeEEecCCCeeEeecCCCccccCCCcceEeCCCCC
Q psy16496 134 DLNIGDKVLTLNTITGEMEYSEVLLFLHRDPNLVHNFVQITTESGSLIKMTPSHLILRWHRPNAKSILNDIEYTYAERVR 213 (245)
Q Consensus 134 dL~~GDrVLa~d~~~G~~~yS~Vi~fl~r~~~~~~~Fv~I~Te~g~~L~lTp~Hlifv~~~~~~~~~~~~~~~v~A~~v~ 213 (245)
+|++|-+||+.-. ++.-.--.|+.....+.. .-|.|.-.++..-.++.+|+.|... . ...++.
T Consensus 8 ~l~Vg~~vlg~k~-~~~W~rg~v~~I~~~~~g---~~YkVkF~~~g~~ivs~~hiA~~~~-p------------~~~~l~ 70 (213)
T 3dlm_A 8 DLIVSMRILGKKR-TKTWHKGTLIAIQTVGPG---KKYKVKFDNKGKSLLSGNHIAYDYH-P------------PADKLY 70 (213)
T ss_dssp TEETTCEEEEECT-TSBEEEEEEEEEEEETTE---EEEEEEESSSCEEEECGGGEEESSC-C------------CGGGCC
T ss_pred cEEEccEEEEEec-CCcEEEEEEEEEEECCCC---eEEEEEEcCCCCEEeecceEEEecC-C------------CccEEe
Confidence 7899999999987 787776777766654433 3466666655556799999999543 1 244577
Q ss_pred CCCEEEEcc
Q psy16496 214 VNDSIIVHK 222 (245)
Q Consensus 214 ~GD~V~v~~ 222 (245)
+|-.|...-
T Consensus 71 vG~RVVA~~ 79 (213)
T 3dlm_A 71 VGSRVVAKY 79 (213)
T ss_dssp TTCEEEEEE
T ss_pred EEEEEEEEe
Confidence 777775543
No 102
>2eqq_A GBP, growth-blocking peptide, long form; cytokine; NMR {Mythimna separata} SCOP: j.8.1.1 PDB: 2eqt_A
Probab=21.28 E-value=53 Score=19.03 Aligned_cols=19 Identities=16% Similarity=0.392 Sum_probs=14.2
Q ss_pred CcccccCCcEEEeeCCCceec
Q psy16496 112 GAGCFTGDSTVTLDNHKTINI 132 (245)
Q Consensus 112 ~ggCFpgdt~V~l~dG~~k~I 132 (245)
+|||.+|- ..++||+-||-
T Consensus 4 ~ggc~~gy--~rtadgrckpt 22 (28)
T 2eqq_A 4 SGGCVAGY--MRTPDGRCKPT 22 (28)
T ss_dssp SCCCSTTE--EECTTCCEEES
T ss_pred cccccccc--eECCCCccCce
Confidence 57898774 56889988873
No 103
>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1pky_A 1e0u_A
Probab=20.63 E-value=63 Score=30.71 Aligned_cols=17 Identities=12% Similarity=0.405 Sum_probs=14.2
Q ss_pred eCCCCCCCCEEEEccCC
Q psy16496 208 YAERVRVNDSIIVHKNG 224 (245)
Q Consensus 208 ~A~~v~~GD~V~v~~g~ 224 (245)
+..+|++||.|++-||.
T Consensus 113 l~~~v~~Gd~ilidDG~ 129 (470)
T 1e0t_A 113 FTTDLSVGNTVLVDDGL 129 (470)
T ss_dssp HHHHCCTTCEEEETTTT
T ss_pred HHhhcCCCCEEEEeCCE
Confidence 57889999999987764
No 104
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=20.16 E-value=53 Score=23.43 Aligned_cols=16 Identities=25% Similarity=0.272 Sum_probs=13.1
Q ss_pred CCCCCCCCEEEEccCC
Q psy16496 209 AERVRVNDSIIVHKNG 224 (245)
Q Consensus 209 A~~v~~GD~V~v~~g~ 224 (245)
-.++++||+|++.-|-
T Consensus 33 v~~~~vGD~VLVH~Gf 48 (75)
T 2z1c_A 33 MPDTKPGDWVIVHTGF 48 (75)
T ss_dssp STTCCTTCEEEEETTE
T ss_pred eCCCCCCCEEEEecch
Confidence 3678999999998873
Done!