RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16496
(245 letters)
>d3d1ma1 d.65.1.2 (A:41-188) Sonic hedgehog {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 148
Score = 184 bits (468), Expect = 5e-60
Identities = 72/88 (81%), Positives = 81/88 (92%)
Query: 16 QRLKEKLNTLAISVMNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYG 75
QR K+KLN LAISVMN+WPGV+LRV EGWDE+GHH+ +SLHYEGRAVDITTSDRD SKYG
Sbjct: 61 QRCKDKLNALAISVMNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYG 120
Query: 76 LLARMAVEAGFDWVYYESRNHIHCSVKT 103
+LAR+AVEAGFDWVYYES+ HIHCSVK
Sbjct: 121 MLARLAVEAGFDWVYYESKAHIHCSVKA 148
>d1at0a_ b.86.1.1 (A:) Hedgehog {Fruit fly (Drosophila melanogaster)
[TaxId: 7227]}
Length = 145
Score = 61.8 bits (149), Expect = 8e-13
Identities = 34/107 (31%), Positives = 65/107 (60%), Gaps = 6/107 (5%)
Query: 115 CFTGDSTVTLDNHKTINITDLNIGDKVLTLNTITGEMEYSEVLLFLHRDPNLVHNFVQIT 174
CFT +ST L++ + +L+IGD+VL++ G+ YSEV+LF+ R+ + NFVQ+
Sbjct: 1 CFTPESTALLESGVRKPLGELSIGDRVLSMT-ANGQAVYSEVILFMDRNLEQMQNFVQLH 59
Query: 175 TESGSLIKMTPSHLILRWHRPNAKSILNDIEYTYAERVRVNDSIIVH 221
T+ G+++ +TP+HL+ W + + + +A+R+ + ++V
Sbjct: 60 TDGGAVLTVTPAHLVSVWQPES-----QKLTFVFADRIEEKNQVLVR 101
>d1mi8a_ b.86.1.2 (A:) DnaB intein {Synechocystis sp. pcc 6803
[TaxId: 1148]}
Length = 158
Score = 50.2 bits (119), Expect = 1e-08
Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 114 GCFTGDSTVTL-DNHKTINITDL--NIGDKVLTLNTITGEMEYSEVLLFLHRDPNLVHNF 170
G +GDS ++L K ++I DL ++ +N T ++E ++V
Sbjct: 2 GAISGDSLISLASTGKRVSIKDLLDEKDFEIWAINEQTMKLESAKVSRVFMTG---KKLV 58
Query: 171 VQITTESGSLIKMTPSHLILRWH 193
+ T G IK T +H L
Sbjct: 59 YILKTRLGRTIKATANHRFLTID 81
>d1am2a_ b.86.1.2 (A:) GyrA intein {Mycobacterium xenopi [TaxId:
1789]}
Length = 199
Score = 50.2 bits (119), Expect = 2e-08
Identities = 18/116 (15%), Positives = 38/116 (32%), Gaps = 11/116 (9%)
Query: 114 GCFTGDSTVTLDNHKTINITDLNIGDKV-----LTLNTITGEMEYSEVLLFLHRDPNLVH 168
TGD+ V L +++ I D+ G + + L + H H
Sbjct: 1 ASITGDALVALPEGESVRIADIVPGARPNSDNAIDLKVLDRHGNPVLADRLFHSG---EH 57
Query: 169 NFVQITTESGSLIKMTPSHLILRWHRPNAKSILNDIEYTYAERVRVNDSIIVHKNG 224
+ T G + T +H +L L + + ++ D ++ ++
Sbjct: 58 PVYAVRTVEGLRVTGTANHPLLCLVDVAGVPTL---LWKLIDEIKPGDYAVIQRSA 110
>d1oa8a_ b.145.1.1 (A:) Ataxin-1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 128
Score = 40.5 bits (94), Expect = 3e-05
Identities = 12/112 (10%), Positives = 31/112 (27%), Gaps = 6/112 (5%)
Query: 115 CFTGDSTVTLDNHKTINITDLNIGDKVLTLNTITGEMEYSEVLLFLHRDPNLVHNFVQIT 174
F S + L N + + DL D + + S + + + +Q
Sbjct: 13 YFMKGSIIQLANGELKKVEDLKTEDFIQSAEISNDLKIDSSTVERIEDSHSPGVAVIQFA 72
Query: 175 TESGS---LIKMTPSHLILRWHRPNAKSILNDIEYTY---AERVRVNDSIIV 220
+++ + + + + + ++ V D I
Sbjct: 73 VGEHRAQVSVEVLVEYPFFVFGQGWSSCCPERTSQLFDLPCSKLSVGDVCIS 124
>d1dq3a1 b.86.1.2 (A:1-128,A:415-454) PI-Pfui intein {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 168
Score = 38.1 bits (88), Expect = 3e-04
Identities = 18/132 (13%), Positives = 41/132 (31%), Gaps = 34/132 (25%)
Query: 115 CFTGDSTVTLDNHKTINITDL--------------------------NIGDKVLTLNTIT 148
C G + + +N ++T + N+ V + + +
Sbjct: 1 CIDGKAKIIFENEGEEHLTTMEEMYERYKHLGEFYDEEYNRWGIDVSNVPIYVKSFDPES 60
Query: 149 GEMEYSEVL-LFLHRDPNLVHNFVQITTESGSLIKMTPSHLILRWHRPNAKSILNDIEYT 207
+ +V ++ + V + +I T G+ I +P H I
Sbjct: 61 KRVVKGKVNVIWKYELGKDVTKY-EIITNKGTKILTSPWHPFFVLTP------DFKIVEK 113
Query: 208 YAERVRVNDSII 219
A+ ++ D +I
Sbjct: 114 RADELKEGDILI 125
>d1lbua2 d.65.1.1 (A:84-213) Zn2+ DD-carboxypeptidase C-terminal
catalytic domain {Streptomyces albus G [TaxId: 1962]}
Length = 130
Score = 36.5 bits (84), Expect = 7e-04
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 7/63 (11%)
Query: 44 WDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV----YYESRNHIHC 99
+ AS+S H G A D+ + LA+ A GF + Y +H H
Sbjct: 59 CNSNVGGASNSRHMYGHAADLGAGSQGFCA---LAQAARNHGFTEILGPGYPGHNDHTHV 115
Query: 100 SVK 102
+
Sbjct: 116 AGG 118
>d1gppa_ b.86.1.2 (A:) VMA1-derived endonuclease (VDE) PI-Scei
intein {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 229
Score = 28.8 bits (64), Expect = 0.57
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 114 GCFTGDSTVTLDNHKTINITDLNIGDKVL 142
CF + V + + I ++ +G+KV+
Sbjct: 2 ACFAKGTNVLMADGSIECIENIEVGNKVM 30
>d2vo9a1 d.65.1.5 (A:1-148) L-alanyl-D-glutamate peptidase Ply
{Listeria phage A500 [TaxId: 40522]}
Length = 148
Score = 26.2 bits (57), Expect = 2.6
Identities = 11/56 (19%), Positives = 14/56 (25%), Gaps = 9/56 (16%)
Query: 42 EGWDEEGHHASDSLHYEGRAVDITTSDRDSSK---------YGLLARMAVEAGFDW 88
G S H G AVD+ D + + GF W
Sbjct: 66 PGAIVTNAKGGQSNHNYGVAVDLCLYTNDGKDVIWESTTSRWKKVVAAMKAEGFKW 121
>d1lr0a_ d.212.1.1 (A:) TolA {Pseudomonas aeruginosa [TaxId: 287]}
Length = 126
Score = 25.0 bits (54), Expect = 5.5
Identities = 8/61 (13%), Positives = 21/61 (34%), Gaps = 8/61 (13%)
Query: 191 RWHRPNA--KSILNDIEYTYAERVRVNDSIIVHKNG------KARNGIQRGAPIPPPRPK 242
+W RP + + ++ + ++ + +G A ++ IP +
Sbjct: 39 QWRRPPSARNGMSVEVLIEMLPDGTITNASVSRSSGDKPFDSSAVAAVRNVGRIPEMQQL 98
Query: 243 P 243
P
Sbjct: 99 P 99
>d1ecfa1 c.61.1.1 (A:250-492) Glutamine PRPP amidotransferase,
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 243
Score = 25.4 bits (55), Expect = 6.8
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 87 DWVYYESRNHIHCSVKTETTHVNGKGAGCFTGD 119
D + ++ N + +V+ E + F G
Sbjct: 183 DGLIFQDLNDLIDAVRAENPDIQQFECSVFNGV 215
>d2o62a2 b.60.1.9 (A:1-132) Uncharacterized protein All1756 ortholog
{Nostoc punctiforme [TaxId: 272131]}
Length = 132
Score = 24.8 bits (54), Expect = 7.3
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 33 WPGVRLRVIEGWDEEGHHASDSLHYEGRA 61
RLR+++ +D GH +L E A
Sbjct: 99 HENRRLRLVQLFDRNGHLNGLTLIREHLA 127
>d1kapp1 b.80.7.1 (P:247-470) Metalloprotease {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 224
Score = 25.2 bits (54), Expect = 8.7
Identities = 9/73 (12%), Positives = 17/73 (23%), Gaps = 9/73 (12%)
Query: 84 AGFDWVYYESRN-HIHCSVKTET--------THVNGKGAGCFTGDSTVTLDNHKTINITD 134
+G D + + + G GA F + D
Sbjct: 89 SGSDLLIGNDVANVLKGGAGNDILYGGLGADQLWGGAGADTFVYGDIAESSAAAPDTLRD 148
Query: 135 LNIGDKVLTLNTI 147
G + L+ +
Sbjct: 149 FVSGQDKIDLSGL 161
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.416
Gapped
Lambda K H
0.267 0.0656 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 926,247
Number of extensions: 40586
Number of successful extensions: 112
Number of sequences better than 10.0: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 19
Length of query: 245
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 162
Effective length of database: 1,268,006
Effective search space: 205416972
Effective search space used: 205416972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.0 bits)