BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16497
(143 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AT0|A Chain A, 17-Kda Fragment Of Hedgehog C-Terminal Autoprocessing
Domain
Length = 145
Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 50/83 (60%), Gaps = 7/83 (8%)
Query: 1 MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVH--KNGKAYVERVTRLENVIQT 58
+TP+HL+ W + K + + +A+R+ + ++V + G+ +RV ++ +V
Sbjct: 68 VTPAHLVSVWQPESQK-----LTFVFADRIEEKNQVLVRDVETGELRPQRVVKVGSVRSK 122
Query: 59 GVYAPLTTSGTIVVNNVFASCYA 81
GV APLT GTIVVN+V ASCYA
Sbjct: 123 GVVAPLTREGTIVVNSVAASCYA 145
>pdb|2V9Y|A Chain A, Human Aminoimidazole Ribonucleotide Synthetase
pdb|2V9Y|B Chain B, Human Aminoimidazole Ribonucleotide Synthetase
Length = 334
Score = 32.0 bits (71), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 85 NQFLAHLSFIPVRLY-HSLVNLFSSNHIENSSHVTG 119
+Q L L P R+Y HSL+ + S H++ +H+TG
Sbjct: 188 DQTLGDLLLTPTRIYSHSLLPVLRSGHVKAFAHITG 223
>pdb|1A02|J Chain J, Structure Of The Dna Binding Domains Of Nfat, Fos And
Jun Bound To Dna
Length = 56
Score = 30.4 bits (67), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 26 YAERVRVNDSIIVHKNGKAYVERVTRLENVIQT 58
AER R+ + I K+ K +ER+ RLE ++T
Sbjct: 2 KAERKRMRNRIAASKSRKRKLERIARLEEKVKT 34
>pdb|1T2K|C Chain C, Structure Of The Dna Binding Domains Of Irf3, Atf-2 And
Jun Bound To Dna
Length = 62
Score = 30.0 bits (66), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 26 YAERVRVNDSIIVHKNGKAYVERVTRLENVIQT 58
AER R+ + I K+ K +ER+ RLE ++T
Sbjct: 2 KAERKRMRNRIAASKSRKRKLERIARLEEKVKT 34
>pdb|1JNM|A Chain A, Crystal Structure Of The JunCRE COMPLEX
pdb|1JNM|B Chain B, Crystal Structure Of The JunCRE COMPLEX
pdb|2H7H|A Chain A, Crystal Structure Of The Jun Bzip Homodimer Complexed
With Ap-1 Dna
pdb|2H7H|B Chain B, Crystal Structure Of The Jun Bzip Homodimer Complexed
With Ap-1 Dna
pdb|1FOS|F Chain F, Two Human C-Fos:c-Jun:dna Complexes
pdb|1FOS|H Chain H, Two Human C-Fos:c-Jun:dna Complexes
Length = 62
Score = 30.0 bits (66), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 26 YAERVRVNDSIIVHKNGKAYVERVTRLENVIQT 58
AER R+ + I K+ K +ER+ RLE ++T
Sbjct: 1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKT 33
>pdb|1MYR|A Chain A, Myrosinase From Sinapis Alba
Length = 501
Score = 28.9 bits (63), Expect = 1.1, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Query: 100 HSLVNLFSSNHIENSSHVTGIHWYPKLLYSMSDYF 134
H + LF S+ + SS+ I++YPK +YS+ DYF
Sbjct: 365 HYIGPLFESDGGDGSSN---IYYYPKGIYSVMDYF 396
>pdb|1NT4|A Chain A, Crystal Structure Of Escherichia Coli Periplasmic
Glucose-1- Phosphatase H18a Mutant Complexed With
Glucose-1-Phosphate
pdb|1NT4|B Chain B, Crystal Structure Of Escherichia Coli Periplasmic
Glucose-1- Phosphatase H18a Mutant Complexed With
Glucose-1-Phosphate
Length = 391
Score = 28.1 bits (61), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 9 RWHRPNAKSILSDIEYTY--AERVRVNDSIIVHKNGKAYVERVT 50
RWH A L IEY Y AE++R D++ + A +RVT
Sbjct: 324 RWHDSKANRDLMKIEYVYQSAEQLRNADALTLQ----APAQRVT 363
>pdb|1E6Q|M Chain M, Myrosinase From Sinapis Alba With The Bound Transition
State Analogue Gluco-Tetrazole
pdb|1E6X|M Chain M, Myrosinase From Sinapis Alba With A Bound Transition State
Analogue,D-Glucono-1,5-Lactone
pdb|1E70|M Chain M, 2-F-Glucosylated Myrosinase From Sinapis Alba
pdb|1E71|M Chain M, Myrosinase From Sinapis Alba With Bound Ascorbate
pdb|1E72|M Chain M, Myrosinase From Sinapis Alba With Bound
Gluco-Hydroximolactam And Sulfate Or Ascorbate
pdb|1E73|M Chain M, 2-F-Glucosylated Myrosinase From Sinapis Alba With Bound
L-Ascorbate
pdb|1E6S|M Chain M, Myrosinase From Sinapis Alba With Bound
Gluco-Hydroximolactam And Sulfate
pdb|1E4M|M Chain M, Myrosinase From Sinapis Alba
pdb|1W9B|M Chain M, S. Alba Myrosinase In Complex With Carba-Glucotropaeolin
pdb|1W9D|M Chain M, S. Alba Myrosinase In Complex With S-Ethyl
Phenylacetothiohydroximate-O-Sulfate
pdb|2WXD|M Chain M, A Micromolar O-Sulfated Thiohydroximate Inhibitor Bound To
Plant Myrosinase
Length = 501
Score = 26.2 bits (56), Expect = 6.2, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 100 HSLVNLFSSNHIENSSHVTGIHWYPKLLYSMSDYF 134
H + LF + +++ + I++YPK +YS+ DYF
Sbjct: 365 HYIGPLFEKDKADSTDN---IYYYPKGIYSVMDYF 396
>pdb|1DWA|M Chain M, Study On Radiation Damage On A Cryocooled Crystal. Part 1:
Structure Prior To Irradiation
pdb|1DWF|M Chain M, Study On Radiation Damage On A Cryocooled Crystal. Part 2:
Structure After Irradiation With 9.110e15 PhotonsMM2
pdb|1DWG|M Chain M, Study On Radiation Damage On A Cryocooled Crystal: Part 3
Structure After Irradiation With 18.210e15 PhotonsMM2.
pdb|1DWH|M Chain M, Study On Radiation Damage On A Cryocooled Crystal. Part 4:
Structure After Irradiation With 27.210e15 PhotonsMM2
pdb|1DWI|M Chain M, Study On Radiation Damage On A Cryocooled Crystal. Part 5:
Structure After Irradiation With 54.010e15 PhotonsMM2
pdb|1DWJ|M Chain M, Study On Radiation Damage On A Cryocooled Crystal. Refined
Part 6: Structure After A Radiation Dose Of 5410e15
PhotonsMM2
Length = 499
Score = 26.2 bits (56), Expect = 6.3, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 100 HSLVNLFSSNHIENSSHVTGIHWYPKLLYSMSDYF 134
H + LF + +++ + I++YPK +YS+ DYF
Sbjct: 363 HYIGPLFEKDKADSTDN---IYYYPKGIYSVMDYF 394
>pdb|3NTL|A Chain A, Crystal Structure Of Glucose-1-Phosphatase (Agpe) From
Enterobacter Cloacae
pdb|3NTL|B Chain B, Crystal Structure Of Glucose-1-Phosphatase (Agpe) From
Enterobacter Cloacae
Length = 398
Score = 25.8 bits (55), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 9 RWHRPNAKSILSDIEYTYAERVRVNDSIIVHKNGKAYVERVT 50
RWH NA L IEY Y ++ ++ ++ A +RVT
Sbjct: 322 RWHDKNANQELMKIEYVYQSSEQLRNASVLSLQSPA--QRVT 361
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.134 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,325,106
Number of Sequences: 62578
Number of extensions: 157353
Number of successful extensions: 292
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 284
Number of HSP's gapped (non-prelim): 11
length of query: 143
length of database: 14,973,337
effective HSP length: 89
effective length of query: 54
effective length of database: 9,403,895
effective search space: 507810330
effective search space used: 507810330
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)