Query psy16497
Match_columns 143
No_of_seqs 116 out of 225
Neff 5.8
Searched_HMMs 29240
Date Fri Aug 16 22:48:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16497.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16497hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1at0_A 17-hedgehog; developmen 99.9 9.4E-28 3.2E-32 179.8 9.5 76 1-81 68-145 (145)
2 2jmz_A Hypothetical protein MJ 99.4 2.5E-13 8.7E-18 104.4 5.9 78 1-85 99-181 (186)
3 1mi8_A DNAB intein; all beta-s 98.8 1.1E-08 3.9E-13 75.9 8.4 67 1-79 71-156 (158)
4 2in0_A Endonuclease PI-MTUI; h 98.4 8.3E-07 2.9E-11 64.4 8.2 65 1-77 69-137 (139)
5 2lcj_A PAB POLC intein; hydrol 97.8 3.3E-05 1.1E-09 58.8 6.1 69 1-77 89-183 (185)
6 4e2u_A PHO RADA intein; HINT-f 97.8 7.6E-05 2.6E-09 56.1 7.5 67 1-77 93-164 (168)
7 1am2_A MXE GYRA intein; protei 97.7 0.00016 5.4E-09 55.8 8.4 71 1-77 72-197 (199)
8 2imz_A Endonuclease PI-MTUI; N 97.1 0.0015 5E-08 48.3 7.2 57 1-71 69-125 (168)
9 2keq_A DNA polymerase III alph 81.7 0.33 1.1E-05 35.0 0.3 66 1-78 70-138 (139)
10 1dq3_A Endonuclease; PI-PFUI, 71.3 2.4 8.3E-05 35.7 2.9 33 1-39 95-127 (454)
11 1at0_A 17-hedgehog; developmen 68.2 16 0.00054 26.1 6.4 47 21-67 12-61 (145)
12 2cw8_A Endonuclease PI-pkoii; 68.1 2.8 9.7E-05 36.3 2.7 33 1-40 92-124 (537)
13 2in0_A Endonuclease PI-MTUI; h 61.9 25 0.00086 24.3 6.4 48 21-68 13-64 (139)
14 3nzm_A SSP DNAE intein, DNA po 58.1 1 3.4E-05 34.1 -1.8 74 1-79 77-168 (168)
15 2f5k_A MORF-related gene 15 is 56.5 16 0.00055 25.2 4.4 27 28-54 21-47 (102)
16 1khi_A HEX1; membrane sealing, 55.5 8 0.00027 29.4 2.9 30 22-55 32-61 (176)
17 2lcc_A AT-rich interactive dom 53.9 17 0.00057 23.6 3.9 27 28-54 4-34 (76)
18 1w4s_A Polybromo, polybromo 1 52.9 17 0.00057 26.7 4.3 27 27-53 24-53 (174)
19 2ro0_A Histone acetyltransfera 49.2 17 0.00057 24.6 3.4 28 27-54 21-48 (92)
20 2vtw_A Fiber protein 2; viral 48.5 7.7 0.00026 29.8 1.8 55 22-82 134-199 (205)
21 2ln7_A LPXTG-SITE transpeptida 47.4 29 0.00099 24.7 4.7 29 28-56 74-102 (147)
22 2rnz_A Histone acetyltransfera 44.7 17 0.00058 24.8 2.9 28 27-54 23-50 (94)
23 2qqr_A JMJC domain-containing 43.9 42 0.0014 23.7 5.0 29 28-56 4-33 (118)
24 4b8u_A 3-hydroxydecanoyl-[acyl 41.6 53 0.0018 24.4 5.5 45 23-77 110-154 (171)
25 3j21_U 50S ribosomal protein L 41.0 39 0.0013 24.0 4.4 26 28-53 44-70 (121)
26 2hd9_A UPF0310 protein PH1033; 40.8 25 0.00086 25.3 3.5 35 26-60 31-71 (145)
27 4g1h_A Sortase family protein; 40.0 72 0.0025 24.4 6.2 51 28-82 128-180 (215)
28 2hc8_A PACS, cation-transporti 40.0 17 0.00057 24.9 2.3 19 23-41 23-41 (113)
29 4dov_A ORC1, origin recognitio 39.1 22 0.00076 26.6 3.0 26 27-52 36-63 (163)
30 1t2w_A Sortase; transpeptidase 38.6 54 0.0019 23.0 5.0 55 24-81 67-125 (145)
31 2kij_A Copper-transporting ATP 35.4 11 0.00036 26.4 0.7 19 23-41 35-53 (124)
32 3fn5_A Sortase A; sortase-fold 35.0 56 0.0019 24.4 4.8 36 28-63 97-134 (187)
33 3er0_A Eukaryotic translation 34.4 58 0.002 24.2 4.7 29 23-55 29-57 (167)
34 1wgs_A MYST histone acetyltran 32.9 64 0.0022 22.9 4.6 29 27-55 10-39 (133)
35 1vq8_T 50S ribosomal protein L 31.8 53 0.0018 23.3 3.9 27 27-53 40-67 (120)
36 2z1c_A Hydrogenase expression/ 30.3 23 0.00079 23.0 1.6 15 27-41 33-47 (75)
37 2qf4_A Cell shape determining 29.8 64 0.0022 23.6 4.2 28 27-54 106-138 (172)
38 2z0t_A Putative uncharacterize 29.6 52 0.0018 22.8 3.5 25 28-54 32-56 (109)
39 3hks_A EIF-5A-2, eukaryotic tr 29.6 58 0.002 24.2 4.0 29 23-55 27-55 (167)
40 2eqj_A Metal-response element- 29.4 78 0.0027 20.2 4.0 27 28-54 12-39 (66)
41 4h4g_A (3R)-hydroxymyristoyl-[ 28.3 1.3E+02 0.0046 21.4 5.8 41 23-77 104-144 (160)
42 2zjr_R 50S ribosomal protein L 28.0 40 0.0014 23.6 2.7 25 29-53 15-40 (115)
43 3v2d_Y 50S ribosomal protein L 28.0 53 0.0018 22.8 3.3 26 28-53 5-31 (110)
44 4i83_A 3-hydroxyacyl-[acyl-car 28.0 1.5E+02 0.0052 20.6 5.9 17 22-38 99-115 (152)
45 2lrq_A Protein MRG15, NUA4 com 34.1 12 0.00043 24.8 0.0 27 28-54 11-37 (85)
46 3g66_A Sortase C; pilus, trans 27.9 92 0.0032 23.7 5.0 51 28-82 127-179 (212)
47 3o0p_A Sortase family protein; 27.9 85 0.0029 24.1 4.8 51 28-82 132-184 (216)
48 2j5u_A MREC protein; bacterial 27.4 62 0.0021 25.2 4.0 28 28-55 168-200 (255)
49 4g1j_A Sortase family protein; 26.9 97 0.0033 23.8 5.0 51 28-82 135-187 (222)
50 2xwg_A Sortase; hydrolase, fim 26.8 96 0.0033 24.0 5.0 31 28-58 164-194 (235)
51 1gpp_A Endonuclease PI-SCEI; h 26.8 54 0.0019 25.9 3.5 31 20-53 21-51 (237)
52 3m9p_A MALE-specific lethal 3 25.8 1.3E+02 0.0045 20.9 5.0 28 29-56 19-51 (110)
53 3rbj_A Sortase C1, sortase fam 25.0 1.1E+02 0.0038 23.6 5.0 33 24-56 140-174 (230)
54 2w1j_A Putative sortase, sorta 24.4 1.1E+02 0.0037 23.2 4.8 29 28-56 128-156 (212)
55 2k1g_A Lipoprotein SPR; soluti 24.4 1.1E+02 0.0037 21.6 4.5 21 22-42 60-80 (135)
56 3cpf_A Eukaryotic translation 23.8 93 0.0032 22.1 4.1 30 23-56 5-34 (138)
57 2p5d_A UPF0310 protein mjecl36 23.5 52 0.0018 23.6 2.7 33 26-59 34-71 (147)
58 2kw8_A LPXTG-SITE transpeptida 23.5 1.2E+02 0.0043 21.5 4.8 36 28-63 87-124 (158)
59 3m9q_A Protein MALE-specific l 23.4 1.8E+02 0.0062 19.8 5.7 28 29-56 19-51 (101)
60 2ot2_A Hydrogenase isoenzymes 23.3 36 0.0012 22.9 1.7 14 28-41 40-53 (90)
61 1x6o_A Eukaryotic initiation f 23.3 72 0.0025 23.8 3.5 29 23-55 29-57 (174)
62 2zkr_t 60S ribosomal protein L 23.1 75 0.0026 23.2 3.5 27 27-53 46-74 (145)
63 1bkb_A Translation initiation 22.2 1E+02 0.0036 21.7 4.0 30 23-56 7-36 (136)
64 3iz5_Y 60S ribosomal protein L 21.7 1E+02 0.0035 22.7 3.9 27 27-53 46-73 (150)
65 2w1k_A Putative sortase; pilus 21.7 1.3E+02 0.0043 23.6 4.8 32 25-56 121-154 (252)
66 2eko_A Histone acetyltransfera 21.6 30 0.001 23.1 1.0 29 26-54 6-39 (87)
67 3rcc_A Sortase SRTA; sortase f 21.4 53 0.0018 23.7 2.4 54 24-81 73-130 (160)
68 1mi8_A DNAB intein; all beta-s 21.3 2.1E+02 0.0072 19.8 6.3 47 22-68 16-66 (158)
69 3u5e_Y L33, YL33, 60S ribosoma 21.2 96 0.0033 22.1 3.6 26 28-53 48-74 (127)
70 2k3y_A Chromatin modification- 21.0 1.2E+02 0.0043 21.7 4.3 26 29-54 9-34 (136)
71 4a17_S RPL26, 60S ribosomal pr 20.7 1.1E+02 0.0037 22.1 3.9 26 28-53 47-73 (135)
72 2q22_A Uncharacterized protein 20.5 53 0.0018 23.8 2.2 18 65-82 97-121 (139)
No 1
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=99.95 E-value=9.4e-28 Score=179.79 Aligned_cols=76 Identities=41% Similarity=0.731 Sum_probs=71.3
Q ss_pred CCCCceEEeeeCCCCCCccCCcceeeecccccCCEEEEeeC--CceEEEEEEEEEEEEeeeeeecCCcceeEEEccEEEe
Q psy16497 1 MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVHKN--GKAYVERVTRLENVIQTGVYAPLTTSGTIVVNNVFAS 78 (143)
Q Consensus 1 LTp~HLifv~~~~~~~~~~~~~~~vfA~~v~~Gd~v~v~~~--~~l~~~rV~~V~~~~~~G~yAPlT~~GtivVd~V~aS 78 (143)
|||+|+||+.+++.++. +.+||++|++||+|++.++ +.+++++|++|+.+++.|+|||||.+|||+||||+||
T Consensus 68 lTp~H~i~v~~~~~~~~-----~~v~A~~l~~GD~v~~~~~~~~~~~~~~V~~v~~~~~~G~yaPlT~~GtivVn~v~aS 142 (145)
T 1at0_A 68 VTPAHLVSVWQPESQKL-----TFVFADRIEEKNQVLVRDVETGELRPQRVVKVGSVRSKGVVAPLTREGTIVVNSVAAS 142 (145)
T ss_dssp ECTTCEEEEEETTTTEE-----EEEEGGGCCTTCEEEEECTTTCCEEEEEEEEEEEEEEEEEEEEEESSSEEEETTEEEE
T ss_pred EeCCCEEEEecCCCCcE-----EEEEHHHCcCCCEEEEecCCCCCEEEEEEEEEEEEEEeeeEccccCcEEEEECCEEEE
Confidence 69999999999876545 8899999999999999987 5799999999999999999999999999999999999
Q ss_pred eee
Q psy16497 79 CYA 81 (143)
Q Consensus 79 Cya 81 (143)
|||
T Consensus 143 cya 145 (145)
T 1at0_A 143 CYA 145 (145)
T ss_dssp SCC
T ss_pred EcC
Confidence 997
No 2
>2jmz_A Hypothetical protein MJ0781; unknown function; NMR {Methanocaldococcus jannaschii} PDB: 2jnq_A
Probab=99.40 E-value=2.5e-13 Score=104.41 Aligned_cols=78 Identities=23% Similarity=0.209 Sum_probs=70.2
Q ss_pred CCCCceEEeeeCCCCCCccCCcceeeecccccCCEEEEeeCCceEEEEEEEEEEEEeeeeeecCCcce--eEEEc---cE
Q psy16497 1 MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVHKNGKAYVERVTRLENVIQTGVYAPLTTSG--TIVVN---NV 75 (143)
Q Consensus 1 LTp~HLifv~~~~~~~~~~~~~~~vfA~~v~~Gd~v~v~~~~~l~~~rV~~V~~~~~~G~yAPlT~~G--tivVd---~V 75 (143)
+||+|.+|+.+. +++ +.++|+++++||+|.+..++.+.+++|++|+..+..|.++|||.+| |++|| |+
T Consensus 99 ~T~~Hp~~v~~~--g~~-----~w~~A~eLk~GD~v~~~~~~~~~~~~V~~v~~~~~~~~vy~Ltv~g~Ht~vv~~~~gi 171 (186)
T 2jmz_A 99 LTHDHPVYISKT--GEV-----LEINAEMVKVGDYIYIPKNNTINLDEVIKVETVDYNGHIYDLTVEDNHTYIAGKNEGF 171 (186)
T ss_dssp BCTTCEEEEEET--TEE-----EEEEGGGCCTTSEEEEECSSSEEEEECCCCCEEEECSCEEEEECTTTSEEEESSTTCE
T ss_pred EeCCCEEEEeCC--CeE-----EEEEhhcCCCCCEEEecccCCccceEEEEEEEeccCCEEEeeEEcCceeEEecCCCCE
Confidence 599999999975 344 7899999999999999988789999999999999999999999999 99999 99
Q ss_pred EEeeeeeecc
Q psy16497 76 FASCYAVIDN 85 (143)
Q Consensus 76 ~aSCya~i~~ 85 (143)
++||+..-..
T Consensus 172 ~vhn~~~~~~ 181 (186)
T 2jmz_A 172 AVSASSGTLH 181 (186)
T ss_dssp EEECCSSTTT
T ss_pred EEEcCCCCcc
Confidence 9999976443
No 3
>1mi8_A DNAB intein; all beta-strands, hydrolase; 2.00A {Synechocystis SP} SCOP: b.86.1.2
Probab=98.84 E-value=1.1e-08 Score=75.93 Aligned_cols=67 Identities=15% Similarity=0.313 Sum_probs=56.9
Q ss_pred CCCCceEEeeeCCCCCCccCCcceeeecccccCCEEEEee-----------------CCceEEEEEEEEEEEEeeeeeec
Q psy16497 1 MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVHK-----------------NGKAYVERVTRLENVIQTGVYAP 63 (143)
Q Consensus 1 LTp~HLifv~~~~~~~~~~~~~~~vfA~~v~~Gd~v~v~~-----------------~~~l~~~rV~~V~~~~~~G~yAP 63 (143)
+||+|.+|+.+ .-++|+++++||.|.+.. ++.+.+++|++|......++|.
T Consensus 71 ~T~~H~~~t~~-----------gw~~a~~L~~GD~v~~~~~~~~~~~~~~~~l~~~~~~~v~~~~V~~I~~~~~~~VYd- 138 (158)
T 1mi8_A 71 ATANHRFLTID-----------GWKRLDELSLKEHIALPRKLESSSLQLSPEIEKLSQSDISWDSIVSITETGVEEVFD- 138 (158)
T ss_dssp ECTTCEEEETT-----------EEEEGGGCCTTCEEEEECC-----------------CCEEEEEEEEEEEEEEEEEEE-
T ss_pred EeCCceEEecc-----------CCEEhhhCCCCCEEEeccccCccccccchhHhhhhcCCeEEEEEEEEEEeCCCcEEE-
Confidence 48999999753 347999999999999873 2468889999999999999995
Q ss_pred CCcce--eEEEccEEEee
Q psy16497 64 LTTSG--TIVVNNVFASC 79 (143)
Q Consensus 64 lT~~G--tivVd~V~aSC 79 (143)
||.+| |.++||+++.+
T Consensus 139 LtV~~~h~~~angvlvHN 156 (158)
T 1mi8_A 139 LTVPGPHNFVANDIIVHA 156 (158)
T ss_dssp EECTTTCEEEETTEEEEC
T ss_pred EEECCcceEEECCEEEec
Confidence 99999 99999998743
No 4
>2in0_A Endonuclease PI-MTUI; hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 2l8l_A 2in9_A 2in8_A 3ifj_A 3igd_A
Probab=98.43 E-value=8.3e-07 Score=64.44 Aligned_cols=65 Identities=18% Similarity=0.247 Sum_probs=55.2
Q ss_pred CCCCceEEeeeCCCCCCccCCcceeeecccccCCEEEEeeCC--ceEEEEEEEEEEEEeeeeeecCCcce--eEEEccEE
Q psy16497 1 MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVHKNG--KAYVERVTRLENVIQTGVYAPLTTSG--TIVVNNVF 76 (143)
Q Consensus 1 LTp~HLifv~~~~~~~~~~~~~~~vfA~~v~~Gd~v~v~~~~--~l~~~rV~~V~~~~~~G~yAPlT~~G--tivVd~V~ 76 (143)
+||+|.++..+ .-++|+++++||+|++.++. .+++++|.+|......++|. ||-++ |.++||++
T Consensus 69 ~T~~H~~~t~~-----------gw~~a~~L~~Gd~v~~~~~~~~~~~~~~V~~I~~~~~~~VYn-l~V~~~htyv~~gvl 136 (139)
T 2in0_A 69 ATPDHKVLTEY-----------GWRAAGELRKGDRVAVRDVETGELRYSVIREVLPTRRARTFD-LEVEELHTLVAEGVV 136 (139)
T ss_dssp ECTTCEEEETT-----------EEEEGGGCCTTCEEEEECTTTCCEEEEEEEEEEEEEEEEEEE-EEETTTCEEEETTEE
T ss_pred ecCCCeEEecC-----------CcEEHHHCCCCCEEEeCCCcceeecceEEEEEeecCCCcEEE-EEECCCCEEEECCEE
Confidence 48999999432 36799999999999998763 48899999999888899998 88888 89999987
Q ss_pred E
Q psy16497 77 A 77 (143)
Q Consensus 77 a 77 (143)
+
T Consensus 137 V 137 (139)
T 2in0_A 137 V 137 (139)
T ss_dssp E
T ss_pred e
Confidence 6
No 5
>2lcj_A PAB POLC intein; hydrolase; NMR {Pyrococcus abyssi}
Probab=97.81 E-value=3.3e-05 Score=58.80 Aligned_cols=69 Identities=19% Similarity=0.332 Sum_probs=50.7
Q ss_pred CCCCceEEeeeCCCCCCccCCcceeeecccccCCEEEEee------------------CCceE---EEEEEEEEEEEee-
Q psy16497 1 MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVHK------------------NGKAY---VERVTRLENVIQT- 58 (143)
Q Consensus 1 LTp~HLifv~~~~~~~~~~~~~~~vfA~~v~~Gd~v~v~~------------------~~~l~---~~rV~~V~~~~~~- 58 (143)
+||+|.+|+.+. +.+ +.++|+++++||+|.+.. ++.+. ..+|.+|......
T Consensus 89 ~T~~H~~~v~~~--g~~-----~~~~A~eLk~GD~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~~i~~~~~~~ 161 (185)
T 2lcj_A 89 TTVDHPVLVYEN--GRF-----IEKRAFEVKEGDKVLVSELELVEQSSSSQDNPKNENLGSPEHDQLLEIKNIKYVRAND 161 (185)
T ss_dssp ECSSSEEEEEET--TEE-----EEEEGGGCCTTCEEEECCCCCSCCCSSSSCCSCCCSTTCCCCCCCEEEEEEEEECCSS
T ss_pred ECCCCEEEEecC--CeE-----EEEEHHHCCCCCEEEEcccccccccccccccccccccccccccceeEEEEEEEEcCCC
Confidence 599999999975 334 789999999999999976 22222 2377777766543
Q ss_pred e-eeecCCcce--eEEEc-cEEE
Q psy16497 59 G-VYAPLTTSG--TIVVN-NVFA 77 (143)
Q Consensus 59 G-~yAPlT~~G--tivVd-~V~a 77 (143)
+ +| =||..| |.++| |+++
T Consensus 162 ~~VY-dltV~~~Hnf~~n~gi~v 183 (185)
T 2lcj_A 162 DFVF-SLNAKKYHNVIINENIVT 183 (185)
T ss_dssp SEEE-CCEETTSSEEEETTTEEE
T ss_pred CceE-EEEEcCCcceEccCCeEe
Confidence 2 55 377777 88899 8874
No 6
>4e2u_A PHO RADA intein; HINT-fold, unknown function; 1.58A {Pyrococcus horikoshii} PDB: 2lqm_A 4e2t_A*
Probab=97.77 E-value=7.6e-05 Score=56.10 Aligned_cols=67 Identities=21% Similarity=0.272 Sum_probs=52.2
Q ss_pred CCCCceEEeeeCCCCCCccCCcceeeecccccCCEEEEeeC--CceEEEEEEEEEEEEeeeeeecCCcce--eEEE-ccE
Q psy16497 1 MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVHKN--GKAYVERVTRLENVIQTGVYAPLTTSG--TIVV-NNV 75 (143)
Q Consensus 1 LTp~HLifv~~~~~~~~~~~~~~~vfA~~v~~Gd~v~v~~~--~~l~~~rV~~V~~~~~~G~yAPlT~~G--tivV-d~V 75 (143)
+||.|.+|+.+.. . ..++|+++++||+|++..+ +.+.+++|++|.... .-+|. ||-.+ |.++ ||+
T Consensus 93 ~T~~Hp~~~~~~~---~-----~w~~a~~L~~Gd~l~~~~gs~~~~~~~~Vv~i~~~~-~~VYn-ltV~~~Htf~agngv 162 (168)
T 4e2u_A 93 VTPSHPVLLFRDG---L-----QWVPAAEVKPGDVVVGVRNGELEFHEVSSVRIIDYN-NWVYD-LVIPETHNFIAPNGL 162 (168)
T ss_dssp ECTTCEEEEESSS---E-----EEEEGGGCCTTCEEEEEETTEEEEEEEEEEEEEEEE-EEEEE-EECTTTSEEECTTCB
T ss_pred ECCCCcEEEEcCC---C-----EEEEHHHCCCCCEEEeccCCCccEEEEEEEEEEECC-CEEEE-eEECCCeEEEECCCE
Confidence 4999999987532 1 6789999999999999987 467889999998776 55664 45555 6788 887
Q ss_pred EE
Q psy16497 76 FA 77 (143)
Q Consensus 76 ~a 77 (143)
++
T Consensus 163 lV 164 (168)
T 4e2u_A 163 VL 164 (168)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 7
>1am2_A MXE GYRA intein; protein splicing; 2.20A {Mycobacterium xenopi} SCOP: b.86.1.2
Probab=97.70 E-value=0.00016 Score=55.77 Aligned_cols=71 Identities=15% Similarity=0.314 Sum_probs=53.4
Q ss_pred CCCCceEEeeeCCCC--CCccCCcceeeecccccCCEEEEee--------------------------------------
Q psy16497 1 MTPSHLILRWHRPNA--KSILSDIEYTYAERVRVNDSIIVHK-------------------------------------- 40 (143)
Q Consensus 1 LTp~HLifv~~~~~~--~~~~~~~~~vfA~~v~~Gd~v~v~~-------------------------------------- 40 (143)
+||+|.+++.+...+ .+ ..++|+++++||+|++..
T Consensus 72 ~T~dH~~lt~~~~~g~~~~-----~w~~a~eLk~GD~v~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 146 (199)
T 1am2_A 72 GTANHPLLCLVDVAGVPTL-----LWKLIDEIKPGDYAVIQRSAFSVDCAGFARGKPEFAPTTYTVGVPGLVRFLEAHHR 146 (199)
T ss_dssp ECTTCEEEEEEEETTEEEE-----EEEEGGGCCTTCEEEEEGGGCC------------------CCSCTTHHHHHHHTSS
T ss_pred EeCCCEEEEeccCCCccce-----eEEEhhHCCCCCEEEECCcCcchhhcceeccccccccccccccchhhhhhhhhhcc
Confidence 599999999874222 33 678999999999999854
Q ss_pred ------------CCceEEEEEEEEEEEEeeeeeecCCcce---eEEEccEEE
Q psy16497 41 ------------NGKAYVERVTRLENVIQTGVYAPLTTSG---TIVVNNVFA 77 (143)
Q Consensus 41 ------------~~~l~~~rV~~V~~~~~~G~yAPlT~~G---tivVd~V~a 77 (143)
++.+...+|++|.......+|- ||..+ +.++||+++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~vyD-l~V~~~~h~fiangi~v 197 (199)
T 1am2_A 147 DPDAKAIADELTDGRFYYAKVASVTDAGVQPVYS-LRVDTADHAFITNGFVS 197 (199)
T ss_dssp STTHHHHHHHHHCTTEEEEEEEEEEEEEEEEEEE-EEESSSSCEEEETTEEE
T ss_pred ccchhhcceeeccCceEEEEEEEEeecCCcEEEE-eeeCCcCceeEecceEe
Confidence 1246778999998877667775 44444 888999875
No 8
>2imz_A Endonuclease PI-MTUI; N-terminal cysteine sulfinic acid C-terminal aminosuccinimide, hydrolase; 1.70A {Mycobacterium tuberculosis}
Probab=97.11 E-value=0.0015 Score=48.34 Aligned_cols=57 Identities=14% Similarity=0.028 Sum_probs=24.8
Q ss_pred CCCCceEEeeeCCCCCCccCCcceeeecccccCCEEEEeeCCceEEEEEEEEEEEEeeeeeecCCcceeEE
Q psy16497 1 MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVHKNGKAYVERVTRLENVIQTGVYAPLTTSGTIV 71 (143)
Q Consensus 1 LTp~HLifv~~~~~~~~~~~~~~~vfA~~v~~Gd~v~v~~~~~l~~~rV~~V~~~~~~G~yAPlT~~Gtiv 71 (143)
+||+|.+++.+ .-++|+++++||.|.+... +......++ ..++.+++++++.+|++.
T Consensus 69 ~T~~H~~~t~~-----------gw~~a~~L~~Gd~v~~~~~--l~~~~~~~~-~~~~~~llg~l~~dG~~~ 125 (168)
T 2imz_A 69 ATPDHKVLTEY-----------GWRAAGELRKGDRVAQPRR--FDGFGDSAP-IPARVQALADALDDKFLH 125 (168)
T ss_dssp ECTTCEEEETT-----------EEEEGGGCCTTCEEECCBC--CCCC------------------------
T ss_pred EcCCCCEEEcc-----------CCEEHHHCCCCCEEEEecc--CCccccccC-CHHHHHHHHHHhccccee
Confidence 48999999753 3579999999999988642 111112222 234456677777777663
No 9
>2keq_A DNA polymerase III alpha subunit, nucleic acid binding OB-fold tRNA/helicase-type...; intein, DNAE intein, protein splicing; HET: DNA; NMR {Nostoc punctiforme pcc 73102}
Probab=81.72 E-value=0.33 Score=35.00 Aligned_cols=66 Identities=14% Similarity=0.105 Sum_probs=39.2
Q ss_pred CCCCceEEeeeCCCCCCccCCcceeeecccccCCEEEEeeCCceEEEEEEEEEEEEeeeeeecCCcce--eEE-EccEEE
Q psy16497 1 MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVHKNGKAYVERVTRLENVIQTGVYAPLTTSG--TIV-VNNVFA 77 (143)
Q Consensus 1 LTp~HLifv~~~~~~~~~~~~~~~vfA~~v~~Gd~v~v~~~~~l~~~rV~~V~~~~~~G~yAPlT~~G--tiv-Vd~V~a 77 (143)
+||+|.++..+...-.+ +..-+-|.++++||.+ ...+|.+|.......+|- +|..+ +.+ .||+++
T Consensus 70 ~T~dH~~lt~~G~~~~~---~~~Wk~~~eL~~gD~v--------~~~~i~~i~~~~~~~vyd-l~v~~~hnf~~ang~~v 137 (139)
T 2keq_A 70 ATKDHKFMTVDGQMLPI---DEIFERELDLMRVDNL--------PNIKIATRKYLGKQNVYD-IGVERDHNFALKNGFIA 137 (139)
T ss_dssp EETTCEEEBTTCCEEEH---HHHHHHTCCBCCSSCC--------CCCCEEEEEEEEEECEEE-EECSSCSEEECTTSCEE
T ss_pred EeCCCcEEEECCccccc---hhhheehhhccCCCcc--------cccceeEEEEcCCCcEEE-EEECCCCccEeeCCEEE
Confidence 37888887654311000 0013578999999973 446777777666666773 33333 566 677766
Q ss_pred e
Q psy16497 78 S 78 (143)
Q Consensus 78 S 78 (143)
+
T Consensus 138 h 138 (139)
T 2keq_A 138 S 138 (139)
T ss_dssp E
T ss_pred c
Confidence 4
No 10
>1dq3_A Endonuclease; PI-PFUI, intein-encoded, hydrolase; 2.10A {Pyrococcus furiosus} SCOP: b.86.1.2 d.50.3.1 d.95.2.2 d.95.2.2
Probab=71.32 E-value=2.4 Score=35.73 Aligned_cols=33 Identities=18% Similarity=0.139 Sum_probs=26.9
Q ss_pred CCCCceEEeeeCCCCCCccCCcceeeecccccCCEEEEe
Q psy16497 1 MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVH 39 (143)
Q Consensus 1 LTp~HLifv~~~~~~~~~~~~~~~vfA~~v~~Gd~v~v~ 39 (143)
+||.|.+++.+.+ +.+ +.+.|+++++||.|.+.
T Consensus 95 ~T~~H~~~~~~~~-g~~-----~~~~a~~l~~gd~i~~~ 127 (454)
T 1dq3_A 95 TSPWHPFFVLTPD-FKI-----VEKRADELKEGDILIGG 127 (454)
T ss_dssp ECTTCEEEEECTT-SCE-----EEEETTTCCTTCEECBC
T ss_pred EcCCCeEEEEeCC-CcE-----EEEEhhhCCCCCEEEec
Confidence 5999999998643 444 67899999999999874
No 11
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=68.23 E-value=16 Score=26.07 Aligned_cols=47 Identities=17% Similarity=0.160 Sum_probs=32.7
Q ss_pred CcceeeecccccCCEEEEee-CCceEEEEEEEEEEEE--eeeeeecCCcc
Q psy16497 21 DIEYTYAERVRVNDSIIVHK-NGKAYVERVTRLENVI--QTGVYAPLTTS 67 (143)
Q Consensus 21 ~~~~vfA~~v~~Gd~v~v~~-~~~l~~~rV~~V~~~~--~~G~yAPlT~~ 67 (143)
++..+--+++++||.|+..+ ++.+..++|....... ...-|.++..+
T Consensus 12 ~G~~k~i~eL~~GD~Vla~d~~G~~~~s~V~~~~~r~~~~~~~f~~I~t~ 61 (145)
T 1at0_A 12 SGVRKPLGELSIGDRVLSMTANGQAVYSEVILFMDRNLEQMQNFVQLHTD 61 (145)
T ss_dssp TSCEEEGGGCCTTCEEEEECTTSCEEEEEEEEEEEEEEEEEEEEEEEEET
T ss_pred CCCEeEHHHcCCCCEEEEECCCCCEEEEEEEEEEeeCCCcceeEEEEEEC
Confidence 34555678999999999988 4667888888865433 34566666543
No 12
>2cw8_A Endonuclease PI-pkoii; hydrolase; 2.50A {Thermococcus kodakarensis} PDB: 2cw7_A
Probab=68.12 E-value=2.8 Score=36.32 Aligned_cols=33 Identities=12% Similarity=0.227 Sum_probs=27.0
Q ss_pred CCCCceEEeeeCCCCCCccCCcceeeecccccCCEEEEee
Q psy16497 1 MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVHK 40 (143)
Q Consensus 1 LTp~HLifv~~~~~~~~~~~~~~~vfA~~v~~Gd~v~v~~ 40 (143)
+||.|=+|+-+. +.+ ..+-|+++++||.|.+..
T Consensus 92 ~T~~H~~l~~~~--g~~-----~~~~a~elk~GD~v~~~~ 124 (537)
T 2cw8_A 92 ITSGHSLFSVRN--GEL-----VEVTGDELKPGDLVAVPR 124 (537)
T ss_dssp EETTCEEEEEET--TEE-----EEEETTTCCTTCEEEEES
T ss_pred EcCCceEEEEEC--CEE-----EEEEhhcCCCCCEEEEee
Confidence 489999999864 444 678899999999999864
No 13
>2in0_A Endonuclease PI-MTUI; hydrolase; 1.60A {Mycobacterium tuberculosis} PDB: 2l8l_A 2in9_A 2in8_A 3ifj_A 3igd_A
Probab=61.90 E-value=25 Score=24.29 Aligned_cols=48 Identities=15% Similarity=0.034 Sum_probs=32.8
Q ss_pred Ccceeeeccc---ccCCEEEEeeC-CceEEEEEEEEEEEEeeeeeecCCcce
Q psy16497 21 DIEYTYAERV---RVNDSIIVHKN-GKAYVERVTRLENVIQTGVYAPLTTSG 68 (143)
Q Consensus 21 ~~~~vfA~~v---~~Gd~v~v~~~-~~l~~~rV~~V~~~~~~G~yAPlT~~G 68 (143)
+++.+.-+++ ++||.|+..+. +.+.+++|..+.....+-+|-=-|..|
T Consensus 13 ~G~~~~I~~l~~~~~gd~V~s~d~~g~~~~~~v~~~~~~~~~~~~~i~t~~G 64 (139)
T 2in0_A 13 TGTTHRIEDVVDGRKPIHVVAAAKDGTLHARPVVSWFDQGTRDVIGLRIAGG 64 (139)
T ss_dssp TCCEEEHHHHHHTTCCCEEEEECTTSCEEEEEEEEEEEEEEEEEEEEEETTS
T ss_pred CCCEEEHHHhhCccCCCEEEEECCCCCEEEEEEEEEEEcCCcEEEEEEeCCC
Confidence 3455677788 99999999864 567788888876654444454445555
No 14
>3nzm_A SSP DNAE intein, DNA polymerase III subunit alpha; disulfide bond, transferase; HET: DNA; 1.55A {Synechocystis SP} PDB: 1zd7_A* 1zde_A*
Probab=58.08 E-value=1 Score=34.08 Aligned_cols=74 Identities=9% Similarity=0.006 Sum_probs=38.1
Q ss_pred CCCCceEEeeeCCCCCCccCCccee--eecccccCCEEEEeeCCce---------EEEEEEEEEEEE-----eeeeeecC
Q psy16497 1 MTPSHLILRWHRPNAKSILSDIEYT--YAERVRVNDSIIVHKNGKA---------YVERVTRLENVI-----QTGVYAPL 64 (143)
Q Consensus 1 LTp~HLifv~~~~~~~~~~~~~~~v--fA~~v~~Gd~v~v~~~~~l---------~~~rV~~V~~~~-----~~G~yAPl 64 (143)
.||+|-++..+.....+ +.+ -|-+++.||-+-...++.. ...+|..|..+. ..=+|..=
T Consensus 77 aT~DHpflT~dG~~~pl-----~ei~~~~~el~~~d~~p~~~~~~~~~~~~~~~~~~~~v~~v~~v~~~~~~~~~vy~l~ 151 (168)
T 3nzm_A 77 ATSDHRFLTTDYQLLAI-----EEIFARQLDLLTLENIKQTEEALDNHRLPFPLLDAGTIKMVKVIGRRSLGVQRIFDIG 151 (168)
T ss_dssp ECTTCEEEBTTSCEEEH-----HHHHHHTCCEEEECSCCCSSSCSCTTTCSEEHHHHSCEEEECEEEEEEEEEEEEEEEE
T ss_pred ECCCCceEeeCCCeeEH-----HHhhhccceecccccCcccccccccccccccccCCCcEEEEEEEecccCCCcceEecc
Confidence 48899988865532222 344 4566667776543332211 222333433332 33456542
Q ss_pred Ccc-eeEE-EccEEEee
Q psy16497 65 TTS-GTIV-VNNVFASC 79 (143)
Q Consensus 65 T~~-Gtiv-Vd~V~aSC 79 (143)
-.. =|++ .||++||.
T Consensus 152 v~~~Hn~~~~ng~~~~~ 168 (168)
T 3nzm_A 152 LPQDHNFLLANGAIAAX 168 (168)
T ss_dssp CSSCSCEEBTTSCEEC-
T ss_pred ccccceEEEECCEEecC
Confidence 222 2664 89999984
No 15
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=56.49 E-value=16 Score=25.22 Aligned_cols=27 Identities=4% Similarity=0.212 Sum_probs=23.9
Q ss_pred cccccCCEEEEeeCCceEEEEEEEEEE
Q psy16497 28 ERVRVNDSIIVHKNGKAYVERVTRLEN 54 (143)
Q Consensus 28 ~~v~~Gd~v~v~~~~~l~~~rV~~V~~ 54 (143)
..+.+|+.|++..++.+.+++|.+|..
T Consensus 21 ~~f~vGekVl~~~~~~~YeAkIl~v~~ 47 (102)
T 2f5k_A 21 PKFQEGERVLCFHGPLLYEAKCVKVAI 47 (102)
T ss_dssp CSCCTTCEEEEESSSSEEEEEEEEEEE
T ss_pred cccCCCCEEEEEECCEEEEEEEEEEEE
Confidence 357899999999888899999999885
No 16
>1khi_A HEX1; membrane sealing, peroxisomal target, structural protein; 1.78A {Neurospora crassa} SCOP: b.34.5.2 b.40.4.5
Probab=55.46 E-value=8 Score=29.42 Aligned_cols=30 Identities=17% Similarity=0.223 Sum_probs=25.1
Q ss_pred cceeeecccccCCEEEEeeCCceEEEEEEEEEEE
Q psy16497 22 IEYTYAERVRVNDSIIVHKNGKAYVERVTRLENV 55 (143)
Q Consensus 22 ~~~vfA~~v~~Gd~v~v~~~~~l~~~rV~~V~~~ 55 (143)
-.++-++.+|.|++|++.+ +|.||+++++-
T Consensus 32 T~p~q~~~LrkG~yv~IkG----rPCKIveiStS 61 (176)
T 1khi_A 32 TVTIPCHHIRLGDILILQG----RPCQVIRISTS 61 (176)
T ss_dssp EEEEEGGGCCTTCEEEETT----EEEEEEEEEEC
T ss_pred cEEEEhhheeeCCEEEECC----eeeEEEEEEcc
Confidence 3678899999999998865 78999988765
No 17
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=53.89 E-value=17 Score=23.64 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=21.9
Q ss_pred cccccCCEEEEeeC----CceEEEEEEEEEE
Q psy16497 28 ERVRVNDSIIVHKN----GKAYVERVTRLEN 54 (143)
Q Consensus 28 ~~v~~Gd~v~v~~~----~~l~~~rV~~V~~ 54 (143)
..+.+|+.|++..+ +.+.+++|.+|..
T Consensus 4 ~~~~vGekV~~~~~d~k~~~~y~AkIl~i~~ 34 (76)
T 2lcc_A 4 EPCLTGTKVKVKYGRGKTQKIYEASIKSTEI 34 (76)
T ss_dssp CCSSTTCEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred cccCCCCEEEEEeCCCCCCCEEEEEEEEEEc
Confidence 46789999999864 3689999988764
No 18
>1w4s_A Polybromo, polybromo 1 protein; BAH, bromo-associated homology domain, chromatin remodelling, PBAF, SWI/SNF-B, RSC, nuclear protein; 1.55A {Gallus gallus}
Probab=52.85 E-value=17 Score=26.70 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=17.6
Q ss_pred ecccccCCEEEEeeCC---ceEEEEEEEEE
Q psy16497 27 AERVRVNDSIIVHKNG---KAYVERVTRLE 53 (143)
Q Consensus 27 A~~v~~Gd~v~v~~~~---~l~~~rV~~V~ 53 (143)
...+++||||++...+ ....++|.++-
T Consensus 24 g~~~~vGD~V~v~~~~~~~~p~I~rI~~i~ 53 (174)
T 1w4s_A 24 NSMYHVGDYVYVEPAEANLQPHIVCIERLW 53 (174)
T ss_dssp --CCCTTCEEEECCSSTTSCCEEEEEEEEE
T ss_pred CEEEECCCEEEEeCCCCCCCCEEEEEEEEE
Confidence 3578999999997653 24555666554
No 19
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=49.23 E-value=17 Score=24.61 Aligned_cols=28 Identities=11% Similarity=0.243 Sum_probs=24.2
Q ss_pred ecccccCCEEEEeeCCceEEEEEEEEEE
Q psy16497 27 AERVRVNDSIIVHKNGKAYVERVTRLEN 54 (143)
Q Consensus 27 A~~v~~Gd~v~v~~~~~l~~~rV~~V~~ 54 (143)
...+.+|+.|++..++.+++++|.++..
T Consensus 21 ~~~~~vG~kv~v~~~~~~y~AkIl~ir~ 48 (92)
T 2ro0_A 21 VDDIIIKCQCWVQKNDEERLAEILSINT 48 (92)
T ss_dssp TTSCCTTCEEEEEETTEEEEEEEEEEEC
T ss_pred cccccCCCEEEEEECCEEEEEEEEEEEE
Confidence 3468999999999888899999998875
No 20
>2vtw_A Fiber protein 2; viral protein, CELO, short fibre head; 2.00A {Fowl adenovirus 1}
Probab=48.55 E-value=7.7 Score=29.78 Aligned_cols=55 Identities=20% Similarity=0.366 Sum_probs=37.0
Q ss_pred cceeeecccccCCEEEEeeCCceEEEEEEEEE-----------EEEeeeeeecCCcceeEEEccEEEeeeee
Q psy16497 22 IEYTYAERVRVNDSIIVHKNGKAYVERVTRLE-----------NVIQTGVYAPLTTSGTIVVNNVFASCYAV 82 (143)
Q Consensus 22 ~~~vfA~~v~~Gd~v~v~~~~~l~~~rV~~V~-----------~~~~~G~yAPlT~~GtivVd~V~aSCya~ 82 (143)
.++|+.....+|..= + ++.+.+|.+-. +-...|+|.| +..||+.+.-|+-||=|.
T Consensus 134 ~~Pv~Tg~wNpGti~-v----~v~~~~V~~s~~t~~~l~cy~f~C~n~giFn~-a~~GT~~iGPv~~sCPa~ 199 (205)
T 2vtw_A 134 YRPIFTGSLNTGSID-V----RMQVTPVLATNNTTYNLIAFTFQCASAGLFNP-TVNGTVAIGPVVHTCPAA 199 (205)
T ss_dssp EECEEEETCCCCCEE-E----EEEEEEEECTTSCEEEEEEEEEEESSSCTTCT-TCCEEEEEEEEEEEEEBS
T ss_pred eeeeeecCcCCCcee-E----EEEEEEEeccCCcEEEEEEEEEEecCcccccc-cccCcEEecceEeecccc
Confidence 356666666666411 1 34555554321 2237899999 999999999999999875
No 21
>2ln7_A LPXTG-SITE transpeptidase family protein; sortase, sortase family D, enzyme, protein binding; NMR {Bacillus anthracis}
Probab=47.42 E-value=29 Score=24.73 Aligned_cols=29 Identities=10% Similarity=0.318 Sum_probs=23.3
Q ss_pred cccccCCEEEEeeCCceEEEEEEEEEEEE
Q psy16497 28 ERVRVNDSIIVHKNGKAYVERVTRLENVI 56 (143)
Q Consensus 28 ~~v~~Gd~v~v~~~~~l~~~rV~~V~~~~ 56 (143)
.++++||.|++...+....=+|.++..+.
T Consensus 74 ~~l~~GD~i~v~~~~~~~~Y~V~~~~vv~ 102 (147)
T 2ln7_A 74 GQLKEKDTLVLEYDNKTYTYEIQKIWITH 102 (147)
T ss_dssp HHSSTTCEEEEEETTEEEEEEEEEEEEEE
T ss_pred hcccCCCEEEEEECCcEEEEEEEeEEEEC
Confidence 58999999999987766667777777665
No 22
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=44.68 E-value=17 Score=24.80 Aligned_cols=28 Identities=11% Similarity=0.243 Sum_probs=24.1
Q ss_pred ecccccCCEEEEeeCCceEEEEEEEEEE
Q psy16497 27 AERVRVNDSIIVHKNGKAYVERVTRLEN 54 (143)
Q Consensus 27 A~~v~~Gd~v~v~~~~~l~~~rV~~V~~ 54 (143)
...+.+|+.|++..++.++.++|.++..
T Consensus 23 ~~~~~vG~kv~v~~~~~~yeAeIl~ir~ 50 (94)
T 2rnz_A 23 VDDIIIKCQCWVQKNDEERLAEILSINT 50 (94)
T ss_dssp GGGCCTTEEEEEECSSCEEEEEEEEEEC
T ss_pred cccccCCCEEEEEECCEEEEEEEEEEEE
Confidence 3468999999999888899999998875
No 23
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=43.86 E-value=42 Score=23.73 Aligned_cols=29 Identities=21% Similarity=0.400 Sum_probs=23.8
Q ss_pred cccccCCEEEEeeC-CceEEEEEEEEEEEE
Q psy16497 28 ERVRVNDSIIVHKN-GKAYVERVTRLENVI 56 (143)
Q Consensus 28 ~~v~~Gd~v~v~~~-~~l~~~rV~~V~~~~ 56 (143)
..|.+||.|+.... +.+...+|++++.++
T Consensus 4 ~~v~vGq~V~akh~ngryy~~~V~~~~~~~ 33 (118)
T 2qqr_A 4 QSITAGQKVISKHKNGRFYQCEVVRLTTET 33 (118)
T ss_dssp SCCCTTCEEEEECTTSSEEEEEEEEEEEEE
T ss_pred ceeccCCEEEEECCCCCEEeEEEEEEeeEE
Confidence 57899999998776 468899999987765
No 24
>4b8u_A 3-hydroxydecanoyl-[acyl-carrier-protein] dehydrat; lyase, fatty acid biosynthesis, inhibitor, bacterial virulen discovery; HET: IBK; 2.76A {Pseudomonas aeruginosa}
Probab=41.56 E-value=53 Score=24.42 Aligned_cols=45 Identities=18% Similarity=0.149 Sum_probs=27.7
Q ss_pred ceeeecccccCCEEEEeeCCceEEEEEEEEEEEEeeeeeecCCcceeEEEccEEE
Q psy16497 23 EYTYAERVRVNDSIIVHKNGKAYVERVTRLENVIQTGVYAPLTTSGTIVVNNVFA 77 (143)
Q Consensus 23 ~~vfA~~v~~Gd~v~v~~~~~l~~~rV~~V~~~~~~G~yAPlT~~GtivVd~V~a 77 (143)
+..|-.+|.|||.+++.. ..|.++. ...+.++ ...|++.|||..+
T Consensus 110 ~~kFr~~V~Pgd~lv~~e------i~i~~v~--~~~~~~~--~~dg~~~VDG~~v 154 (171)
T 4b8u_A 110 EVKFFGQVLPTAKKVTYN------IHIKRTI--NRSLVLA--IADGTVSVDGREI 154 (171)
T ss_dssp CEEECCCCCTTCCEEEEE------EEEEEEE--CSSSEEE--EEEEEEEETTEEE
T ss_pred eeEEEeeECCCCEEEEEE------EEEEEEE--eCCceEE--EEEEEEEECCEEE
Confidence 566889999999765432 2222222 2233332 3479999999876
No 25
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=41.05 E-value=39 Score=23.98 Aligned_cols=26 Identities=23% Similarity=0.367 Sum_probs=18.1
Q ss_pred cccccCCEEEEeeCC-ceEEEEEEEEE
Q psy16497 28 ERVRVNDSIIVHKNG-KAYVERVTRLE 53 (143)
Q Consensus 28 ~~v~~Gd~v~v~~~~-~l~~~rV~~V~ 53 (143)
-.++.||.|.|..|. .-..-+|.+|.
T Consensus 44 ~~IkkGD~V~Vi~GkdKGk~GkV~~V~ 70 (121)
T 3j21_U 44 LPVRVGDKVRIMRGDYKGHEGKVVEVD 70 (121)
T ss_dssp EECCSSSEEEECSSSCSSEEEEEEEEE
T ss_pred cccccCCEEEEeecCCCCcEeEEEEEE
Confidence 478999999997662 23456666664
No 26
>2hd9_A UPF0310 protein PH1033; pyrococcus horikoshii OT3, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A
Probab=40.77 E-value=25 Score=25.26 Aligned_cols=35 Identities=11% Similarity=0.186 Sum_probs=26.7
Q ss_pred eecccccCCEEEEeeCCc------eEEEEEEEEEEEEeeee
Q psy16497 26 YAERVRVNDSIIVHKNGK------AYVERVTRLENVIQTGV 60 (143)
Q Consensus 26 fA~~v~~Gd~v~v~~~~~------l~~~rV~~V~~~~~~G~ 60 (143)
|-.++++||.++....++ -.+..|++|-.+.+...
T Consensus 31 ~lr~mk~GD~~~fYhs~~~~~~~~~~~~~ivGi~eV~~e~y 71 (145)
T 2hd9_A 31 TLSRVKPGDKLVIYVRQEKDKEGNLLEPKIVGIYEVTSEPY 71 (145)
T ss_dssp HHTTCCTTCEEEEEECCEECTTCCEECCEEEEEEEECSCCE
T ss_pred HHHhCCCCCEEEEEEccccccCCCCCCceEEEEEEEcCCcE
Confidence 667999999999987643 25568999998886433
No 27
>4g1h_A Sortase family protein; cysteine protease, extracellular, transferase; 1.80A {Streptococcus agalactiae serogroup V}
Probab=40.02 E-value=72 Score=24.43 Aligned_cols=51 Identities=14% Similarity=0.170 Sum_probs=33.3
Q ss_pred cccccCCEEEEeeCCceEEEEEEEEEEEEeee--eeecCCcceeEEEccEEEeeeee
Q psy16497 28 ERVRVNDSIIVHKNGKAYVERVTRLENVIQTG--VYAPLTTSGTIVVNNVFASCYAV 82 (143)
Q Consensus 28 ~~v~~Gd~v~v~~~~~l~~~rV~~V~~~~~~G--~yAPlT~~GtivVd~V~aSCya~ 82 (143)
.++++||.|++...++...=+|.++..+.... +..|-+..-.| .+..|+-.
T Consensus 128 ~~lk~GD~I~v~~~~~~~~Y~V~~~~vV~p~d~~~l~~~~g~~~L----TLiTC~p~ 180 (215)
T 4g1h_A 128 NKVKKGQIFYVTNIKETLAYKVVSIKVVDPTALSEVKIVNGKDYI----TLLTCTPY 180 (215)
T ss_dssp GGCCTTCEEEEECSSCEEEEEEEEEEEECGGGGGGCCCCTTCEEE----EEEEEEST
T ss_pred hhCCCCCEEEEEECCEEEEEEEeeEEEECccccceeccCCCCCEE----EEEECCCC
Confidence 58899999999887667777888887776433 23333222111 56688753
No 28
>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F
Probab=39.96 E-value=17 Score=24.94 Aligned_cols=19 Identities=32% Similarity=0.291 Sum_probs=16.8
Q ss_pred ceeeecccccCCEEEEeeC
Q psy16497 23 EYTYAERVRVNDSIIVHKN 41 (143)
Q Consensus 23 ~~vfA~~v~~Gd~v~v~~~ 41 (143)
..+-++++++||.|.+..+
T Consensus 23 ~~i~~~~l~~GDiv~v~~G 41 (113)
T 2hc8_A 23 IAVPVEEVAVGDIVIVRPG 41 (113)
T ss_dssp EEEEGGGCCTTCEEEECTT
T ss_pred EEEEHHHCCCCCEEEECCC
Confidence 6689999999999999765
No 29
>4dov_A ORC1, origin recognition complex subunit 1; DNA replication, replication; 1.70A {Mus musculus} PDB: 4dow_A*
Probab=39.11 E-value=22 Score=26.60 Aligned_cols=26 Identities=19% Similarity=0.497 Sum_probs=18.7
Q ss_pred ecccccCCEEEEeeCC--ceEEEEEEEE
Q psy16497 27 AERVRVNDSIIVHKNG--KAYVERVTRL 52 (143)
Q Consensus 27 A~~v~~Gd~v~v~~~~--~l~~~rV~~V 52 (143)
.-.+++||||++.+.+ +...+||..+
T Consensus 36 ~~~i~vGd~VLI~~~D~~~PyVAki~~l 63 (163)
T 4dov_A 36 EIHIKVGQFVLIQGEDNKKPYVAKLIEL 63 (163)
T ss_dssp EEEEETTCEEEECCSSSSCCEEEEEEEE
T ss_pred CeEEeeCCEEEEeCCcccCChhHHHHHH
Confidence 5679999999998763 3455555554
No 30
>1t2w_A Sortase; transpeptidase, beta barrel, hydrolase; 1.80A {Staphylococcus aureus} SCOP: b.100.1.1 PDB: 1t2o_A 1ija_A 2kid_A* 1t2p_A
Probab=38.59 E-value=54 Score=23.02 Aligned_cols=55 Identities=11% Similarity=0.214 Sum_probs=34.2
Q ss_pred eeee--cccccCCEEEEeeCCceEEEEEEEEEEEEee--eeeecCCcceeEEEccEEEeeee
Q psy16497 24 YTYA--ERVRVNDSIIVHKNGKAYVERVTRLENVIQT--GVYAPLTTSGTIVVNNVFASCYA 81 (143)
Q Consensus 24 ~vfA--~~v~~Gd~v~v~~~~~l~~~rV~~V~~~~~~--G~yAPlT~~GtivVd~V~aSCya 81 (143)
.+|+ .++++||.|++...++...=+|.++..+... .++.|-.....++ .+..|+-
T Consensus 67 ~~F~~L~~l~~Gd~i~v~~~~~~~~Y~V~~~~~v~~~~~~~l~~~~~~~~~l---TLiTC~p 125 (145)
T 1t2w_A 67 YQFTNLKAAKKGSMVYFKVGNETRKYKMTSIRDVKPTDVGVLDEQKGKDKQL---TLITADD 125 (145)
T ss_dssp STTTTGGGCCTTCEEEEEETTEEEEEEEEEEEEECTTTTCCCSSSSSSSCEE---EEEEEEE
T ss_pred cccCChhhCCCCCEEEEEECCEEEEEEEEEEEEECCCcceEecccCCCCCEE---EEEECCC
Confidence 4565 4899999999988776667788888766533 3344422011222 3557874
No 31
>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens}
Probab=35.39 E-value=11 Score=26.37 Aligned_cols=19 Identities=32% Similarity=0.176 Sum_probs=16.4
Q ss_pred ceeeecccccCCEEEEeeC
Q psy16497 23 EYTYAERVRVNDSIIVHKN 41 (143)
Q Consensus 23 ~~vfA~~v~~Gd~v~v~~~ 41 (143)
+.+-++++++||.|.+..+
T Consensus 35 ~~v~~~~l~~GDiv~v~~G 53 (124)
T 2kij_A 35 EQVDVELVQRGDIIKVVPG 53 (124)
T ss_dssp EEEETTTCCTTCEEECCTT
T ss_pred EEEeHHHCCCCCEEEECCC
Confidence 5688999999999999765
No 32
>3fn5_A Sortase A; sortase-fold, hydrolase; HET: EPE; 1.50A {Streptococcus pyogenes serotype M1} PDB: 3fn6_A 3fn7_A
Probab=35.01 E-value=56 Score=24.43 Aligned_cols=36 Identities=22% Similarity=0.198 Sum_probs=26.6
Q ss_pred cccccCCEEEEeeCCceEEEEEEEEEEEEee--eeeec
Q psy16497 28 ERVRVNDSIIVHKNGKAYVERVTRLENVIQT--GVYAP 63 (143)
Q Consensus 28 ~~v~~Gd~v~v~~~~~l~~~rV~~V~~~~~~--G~yAP 63 (143)
.++++||.|++...++...=+|.++..+... .++.|
T Consensus 97 ~~lk~GD~I~v~~~~~~~~Y~V~~~~vV~p~d~~vl~~ 134 (187)
T 3fn5_A 97 ERAQNGMSIYLTDKEKIYEYIIKDVFTVAPERVDVIDD 134 (187)
T ss_dssp GGCCTTCEEEEECSSEEEEEEEEEEEEECTTCGGGGSC
T ss_pred hHCcCCCEEEEEECCeEEEEEEeeEEEECcccceeecc
Confidence 5899999999998777677778887776533 34444
No 33
>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae}
Probab=34.43 E-value=58 Score=24.22 Aligned_cols=29 Identities=7% Similarity=0.109 Sum_probs=23.9
Q ss_pred ceeeecccccCCEEEEeeCCceEEEEEEEEEEE
Q psy16497 23 EYTYAERVRVNDSIIVHKNGKAYVERVTRLENV 55 (143)
Q Consensus 23 ~~vfA~~v~~Gd~v~v~~~~~l~~~rV~~V~~~ 55 (143)
.++-|+++|.|.+|.+.+ +|-+|+.++.+
T Consensus 29 ~pi~a~dlrkG~~I~idG----~p~~Vve~~~~ 57 (167)
T 3er0_A 29 YPMQCSALRKNGFVVIKS----RPCKIVDMSTS 57 (167)
T ss_dssp EEEETTTCCTTCEEEETT----EEEEEEEEEEE
T ss_pred EEEEHHHccCCCEEEECC----EEEEEEEEEEe
Confidence 789999999999987743 57888888765
No 34
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=32.89 E-value=64 Score=22.91 Aligned_cols=29 Identities=7% Similarity=0.074 Sum_probs=24.0
Q ss_pred ecccccCCEEEEeeC-CceEEEEEEEEEEE
Q psy16497 27 AERVRVNDSIIVHKN-GKAYVERVTRLENV 55 (143)
Q Consensus 27 A~~v~~Gd~v~v~~~-~~l~~~rV~~V~~~ 55 (143)
...+.+|+.|++..+ +.+++++|..|...
T Consensus 10 ~~~~~vGe~v~~~~~d~~~y~AkIl~i~~~ 39 (133)
T 1wgs_A 10 EVTVEIGETYLCRRPDSTWHSAEVIQSRVN 39 (133)
T ss_dssp CCCCCTTSEEEEEETTTEEEEEEEEEEEEE
T ss_pred ccccCCCCEEEEEeCCCCEEEEEEEEEEec
Confidence 346789999999986 68999999998754
No 35
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=31.80 E-value=53 Score=23.25 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=18.7
Q ss_pred ecccccCCEEEEeeCC-ceEEEEEEEEE
Q psy16497 27 AERVRVNDSIIVHKNG-KAYVERVTRLE 53 (143)
Q Consensus 27 A~~v~~Gd~v~v~~~~-~l~~~rV~~V~ 53 (143)
.-.++.||.|.|..|. .-...+|.+|.
T Consensus 40 ~~~IkkGD~V~Vi~G~dKGk~GkV~~V~ 67 (120)
T 1vq8_T 40 NVRVNAGDTVEVLRGDFAGEEGEVINVD 67 (120)
T ss_dssp EEECCTTCEEEECSSTTTTCEEEEEEEE
T ss_pred cccccCCCEEEEEecCCCCCEEEEEEEE
Confidence 4579999999997762 23556666664
No 36
>2z1c_A Hydrogenase expression/formation protein HYPC; [NIFE] hydrogenase maturation, OB-fold, chaperone, metal BIN protein; HET: PG4; 1.80A {Thermococcus kodakarensis} SCOP: b.40.14.1
Probab=30.25 E-value=23 Score=23.04 Aligned_cols=15 Identities=27% Similarity=0.406 Sum_probs=12.5
Q ss_pred ecccccCCEEEEeeC
Q psy16497 27 AERVRVNDSIIVHKN 41 (143)
Q Consensus 27 A~~v~~Gd~v~v~~~ 41 (143)
-.++++||+|++.-+
T Consensus 33 v~~~~vGD~VLVH~G 47 (75)
T 2z1c_A 33 MPDTKPGDWVIVHTG 47 (75)
T ss_dssp STTCCTTCEEEEETT
T ss_pred eCCCCCCCEEEEecc
Confidence 367899999999875
No 37
>2qf4_A Cell shape determining protein MREC; filament A-lytic protease fold, structural protein; 1.20A {Streptococcus pneumoniae} PDB: 2qf5_A
Probab=29.78 E-value=64 Score=23.60 Aligned_cols=28 Identities=14% Similarity=0.164 Sum_probs=20.4
Q ss_pred ecccccCCEEEEeeCC-----ceEEEEEEEEEE
Q psy16497 27 AERVRVNDSIIVHKNG-----KAYVERVTRLEN 54 (143)
Q Consensus 27 A~~v~~Gd~v~v~~~~-----~l~~~rV~~V~~ 54 (143)
-.++++||.|.+.+-+ ++...+|++|..
T Consensus 106 ~~~i~~GD~vvTSGl~g~fP~GipVG~V~~v~~ 138 (172)
T 2qf4_A 106 NSDISAGDKVTTGGLGNFNVADIPVGEVVATTH 138 (172)
T ss_dssp CCCCCTTCEEEEECCSSSCCEEEEEEEEEEEES
T ss_pred CCCCCCCCEEEECCCCCcCCCCCEEEEEEEEec
Confidence 3489999999998753 366667777753
No 38
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=29.63 E-value=52 Score=22.77 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=16.8
Q ss_pred cccccCCEEEEeeCCceEEEEEEEEEE
Q psy16497 28 ERVRVNDSIIVHKNGKAYVERVTRLEN 54 (143)
Q Consensus 28 ~~v~~Gd~v~v~~~~~l~~~rV~~V~~ 54 (143)
.++++||.+... +.-...+|+.|..
T Consensus 32 ~~ikvGD~I~f~--~~~l~~~V~~v~~ 56 (109)
T 2z0t_A 32 RQIKPGDIIIFE--GGKLKVKVKGIRV 56 (109)
T ss_dssp GGCCTTCEEEEG--GGTEEEEEEEEEE
T ss_pred hcCCCCCEEEEC--CCEEEEEEEEEEc
Confidence 357899999883 3345667776654
No 39
>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana}
Probab=29.59 E-value=58 Score=24.24 Aligned_cols=29 Identities=14% Similarity=0.158 Sum_probs=23.6
Q ss_pred ceeeecccccCCEEEEeeCCceEEEEEEEEEEE
Q psy16497 23 EYTYAERVRVNDSIIVHKNGKAYVERVTRLENV 55 (143)
Q Consensus 23 ~~vfA~~v~~Gd~v~v~~~~~l~~~rV~~V~~~ 55 (143)
.++-|+++|.|.+|.+.+ +|-+|+.++.+
T Consensus 27 ~pi~~~dlrkG~~I~idG----~P~~Vve~~~~ 55 (167)
T 3hks_A 27 YPQSAGNIRKGGHIVIKN----RPCKVVEVSTS 55 (167)
T ss_dssp EEEEGGGCCTTSEEEETT----EEEEEEEEEEE
T ss_pred EEEEHHHccCCCEEEECC----EEEEEEEEEEe
Confidence 788999999999997743 57788887765
No 40
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=29.38 E-value=78 Score=20.20 Aligned_cols=27 Identities=7% Similarity=0.286 Sum_probs=22.4
Q ss_pred cccccCCEEEEee-CCceEEEEEEEEEE
Q psy16497 28 ERVRVNDSIIVHK-NGKAYVERVTRLEN 54 (143)
Q Consensus 28 ~~v~~Gd~v~v~~-~~~l~~~rV~~V~~ 54 (143)
.+.++||.|+..- ++.+.+.+|.+|..
T Consensus 12 ~~f~vGddVLA~wtDGl~Y~gtI~~V~~ 39 (66)
T 2eqj_A 12 CKFEEGQDVLARWSDGLFYLGTIKKINI 39 (66)
T ss_dssp CCSCTTCEEEEECTTSCEEEEEEEEEET
T ss_pred ccccCCCEEEEEEccCcEEEeEEEEEcc
Confidence 4689999999875 45689999999975
No 41
>4h4g_A (3R)-hydroxymyristoyl-[acyl-carrier-protein] DEHY; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Burkholderia thailandensis}
Probab=28.33 E-value=1.3e+02 Score=21.40 Aligned_cols=41 Identities=17% Similarity=0.280 Sum_probs=24.1
Q ss_pred ceeeecccccCCEEEEeeCCceEEEEEEEEEEEEeeeeeecCCcceeEEEccEEE
Q psy16497 23 EYTYAERVRVNDSIIVHKNGKAYVERVTRLENVIQTGVYAPLTTSGTIVVNNVFA 77 (143)
Q Consensus 23 ~~vfA~~v~~Gd~v~v~~~~~l~~~rV~~V~~~~~~G~yAPlT~~GtivVd~V~a 77 (143)
+..|-+.|+|||.|.+. .++.+ . ..|+. .-+|++-|||.++
T Consensus 104 ~~kF~~~V~PGd~L~i~-------v~~~~--~--~~~~~---~~~~~~~v~g~~v 144 (160)
T 4h4g_A 104 NARFKRVVEPGDQLILN-------VTFER--Y--IRGIW---KFKAVAEVDGKVA 144 (160)
T ss_dssp EEEECSCCCTTCEEEEE-------EEEEE--E--ETTEE---EEEEEEEETTEEE
T ss_pred eEEECcccCCCCEEEEE-------EEEEE--e--eCCEE---EEEEEEEECCEEE
Confidence 56688999999977442 12211 1 12221 2457888888665
No 42
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=28.05 E-value=40 Score=23.57 Aligned_cols=25 Identities=20% Similarity=0.213 Sum_probs=17.9
Q ss_pred ccccCCEEEEeeC-CceEEEEEEEEE
Q psy16497 29 RVRVNDSIIVHKN-GKAYVERVTRLE 53 (143)
Q Consensus 29 ~v~~Gd~v~v~~~-~~l~~~rV~~V~ 53 (143)
.++.||.|.+..+ ..-..-+|.+|.
T Consensus 15 ~IkkGD~V~Vi~GkdKGk~GkV~~V~ 40 (115)
T 2zjr_R 15 HFKKGDTVIVLSGKHKGQTGKVLLAL 40 (115)
T ss_dssp SSCTTSEEECCSSSSTTCEEEEEEEE
T ss_pred cccCCCEEEEeEcCCCCcEEEEEEEE
Confidence 8999999999765 233556666664
No 43
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=28.04 E-value=53 Score=22.83 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=17.4
Q ss_pred cccccCCEEEEeeCC-ceEEEEEEEEE
Q psy16497 28 ERVRVNDSIIVHKNG-KAYVERVTRLE 53 (143)
Q Consensus 28 ~~v~~Gd~v~v~~~~-~l~~~rV~~V~ 53 (143)
-.++.||.|.+..+. .-..-+|.+|.
T Consensus 5 ~~IkkGD~V~Vi~GkdKGk~GkV~~V~ 31 (110)
T 3v2d_Y 5 MHVKKGDTVLVASGKYKGRVGKVKEVL 31 (110)
T ss_dssp CSCCTTSEEEECSSTTTTCEEEEEEEE
T ss_pred cccCCCCEEEEeEcCCCCeEeEEEEEE
Confidence 478999999997652 23445565554
No 44
>4i83_A 3-hydroxyacyl-[acyl-carrier-protein] dehydratase; FABZ, hot DOG fold, thioesterase, lyase; 2.60A {Neisseria meningitidis}
Probab=28.01 E-value=1.5e+02 Score=20.59 Aligned_cols=17 Identities=18% Similarity=0.286 Sum_probs=12.9
Q ss_pred cceeeecccccCCEEEE
Q psy16497 22 IEYTYAERVRVNDSIIV 38 (143)
Q Consensus 22 ~~~vfA~~v~~Gd~v~v 38 (143)
++..|-..|++||.+.+
T Consensus 99 ~~vkF~~pV~PGd~L~i 115 (152)
T 4i83_A 99 DEARFKRQVIPGDQLVF 115 (152)
T ss_dssp CSEEECSCCCTTCEEEE
T ss_pred cEEEEccccCCCCEEEE
Confidence 35668888999998744
No 45
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster}
Probab=34.06 E-value=12 Score=24.80 Aligned_cols=27 Identities=7% Similarity=0.132 Sum_probs=23.0
Q ss_pred cccccCCEEEEeeCCceEEEEEEEEEE
Q psy16497 28 ERVRVNDSIIVHKNGKAYVERVTRLEN 54 (143)
Q Consensus 28 ~~v~~Gd~v~v~~~~~l~~~rV~~V~~ 54 (143)
..+.+|+.|++..++.+.+++|.+|..
T Consensus 11 ~~~~~Gekv~~~~~~~~y~AkIl~i~~ 37 (85)
T 2lrq_A 11 TLFVDGERVLCFHGPLIYEAKVLKTKP 37 (85)
Confidence 357899999998887889999999875
No 46
>3g66_A Sortase C; pilus, transferase; HET: MES; 1.70A {Streptococcus pneumoniae} PDB: 3g69_A*
Probab=27.89 E-value=92 Score=23.75 Aligned_cols=51 Identities=10% Similarity=0.144 Sum_probs=33.0
Q ss_pred cccccCCEEEEeeCCceEEEEEEEEEEEEeee--eeecCCcceeEEEccEEEeeeee
Q psy16497 28 ERVRVNDSIIVHKNGKAYVERVTRLENVIQTG--VYAPLTTSGTIVVNNVFASCYAV 82 (143)
Q Consensus 28 ~~v~~Gd~v~v~~~~~l~~~rV~~V~~~~~~G--~yAPlT~~GtivVd~V~aSCya~ 82 (143)
.++++||.|++...++...=+|.++..+.... +..|-+..-.| .+..|+-.
T Consensus 127 ~~lk~GD~I~v~~~~~~~~Y~V~~~~vV~p~d~~~l~~~~~~~~L----TLiTC~p~ 179 (212)
T 3g66_A 127 DKMKKGDIFYLHVLDQVLAYQVDQIVTVEPNDFEPVLIQHGEDYA----TLLTCTPY 179 (212)
T ss_dssp GGCCTTCEEEEEETTEEEEEEEEEEEEECTTCCGGGSCCTTCEEE----EEEEEEST
T ss_pred hhCCcCCEEEEEECCeEEEEEEeeEEEECccccceeccCCCCCEE----EEEECCCC
Confidence 48899999999988767777888887776443 23332221111 45677753
No 47
>3o0p_A Sortase family protein; PILI assembly, PILI subunits, transferase ,hydrolas transferase, hydrolase; 1.30A {Streptococcus agalactiae}
Probab=27.86 E-value=85 Score=24.06 Aligned_cols=51 Identities=8% Similarity=0.201 Sum_probs=32.8
Q ss_pred cccccCCEEEEeeCCceEEEEEEEEEEEEeee--eeecCCcceeEEEccEEEeeeee
Q psy16497 28 ERVRVNDSIIVHKNGKAYVERVTRLENVIQTG--VYAPLTTSGTIVVNNVFASCYAV 82 (143)
Q Consensus 28 ~~v~~Gd~v~v~~~~~l~~~rV~~V~~~~~~G--~yAPlT~~GtivVd~V~aSCya~ 82 (143)
.++++||.|++...++...=+|.++..+.... +..|-+..-.| .+..|+-.
T Consensus 132 ~~Lk~GD~I~v~~~~~~~~Y~V~~~~vV~p~d~~~l~~~~~~~~L----TLiTC~p~ 184 (216)
T 3o0p_A 132 KKLKKGDKFYIQNIKETIAYQVDQIKVVTPDNFSDLLVVPGHDYA----TLLTCTPI 184 (216)
T ss_dssp GGCCTTCEEEEECSSCEEEEEEEEEEEECTTCCGGGSCCTTCEEE----EEEEEEST
T ss_pred hhCCcCCEEEEEECCEEEEEEEeeEEEECccccceeccCCCCCEE----EEEECCCC
Confidence 58899999999987767777888887775333 23333221111 45678753
No 48
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=27.43 E-value=62 Score=25.23 Aligned_cols=28 Identities=7% Similarity=0.308 Sum_probs=21.8
Q ss_pred cccccCCEEEEeeCC-----ceEEEEEEEEEEE
Q psy16497 28 ERVRVNDSIIVHKNG-----KAYVERVTRLENV 55 (143)
Q Consensus 28 ~~v~~Gd~v~v~~~~-----~l~~~rV~~V~~~ 55 (143)
.+|++||.|.+.+-+ ++...+|++|...
T Consensus 168 ~~i~~GD~VvTSGl~gifP~GipVG~V~~V~~~ 200 (255)
T 2j5u_A 168 MKFKKGQKVVTSGLGGKFPAGIFIGTIEKVETD 200 (255)
T ss_dssp SCCCTTCEEEECCTTSSSCTTCEEEEEEEEEEC
T ss_pred CCCCCCCEEEECCCCCcCCCCCEEEEEEEEeeC
Confidence 479999999998743 4777888888654
No 49
>4g1j_A Sortase family protein; cysteine protease, extracellular, transferase; 1.75A {Streptococcus agalactiae serogroup V} PDB: 3tb7_A 3rbi_A 3rbk_A 3tbe_A 3rbj_A
Probab=26.90 E-value=97 Score=23.82 Aligned_cols=51 Identities=12% Similarity=0.254 Sum_probs=33.7
Q ss_pred cccccCCEEEEeeCCceEEEEEEEEEEEEeee--eeecCCcceeEEEccEEEeeeee
Q psy16497 28 ERVRVNDSIIVHKNGKAYVERVTRLENVIQTG--VYAPLTTSGTIVVNNVFASCYAV 82 (143)
Q Consensus 28 ~~v~~Gd~v~v~~~~~l~~~rV~~V~~~~~~G--~yAPlT~~GtivVd~V~aSCya~ 82 (143)
.++++||.|++...++...=+|.++..+.... ++.|-+..-.| .+..|+-.
T Consensus 135 ~~Lk~GD~I~v~~~~~~~~Y~V~~~~vV~p~d~~~l~~~~g~~~L----TLiTC~p~ 187 (222)
T 4g1j_A 135 DKVTVGDRFYIEHIGGKIAYQVDQIKVIAPDQLEDLYVIQGEDHV----TLLTCTPY 187 (222)
T ss_dssp GGCCTTCEEEEEETTEEEEEEEEEEEEECTTCCGGGSCCTTCEEE----EEEEEEST
T ss_pred hhCccCCEEEEEECCEEEEEEEeeEEEECcccceeeccCCCCCEE----EEEECCCC
Confidence 58899999999987767777888887776443 34443221111 46688753
No 50
>2xwg_A Sortase; hydrolase, fimbrial assembly; 2.40A {Actinomyces oris}
Probab=26.82 E-value=96 Score=23.99 Aligned_cols=31 Identities=16% Similarity=0.214 Sum_probs=24.2
Q ss_pred cccccCCEEEEeeCCceEEEEEEEEEEEEee
Q psy16497 28 ERVRVNDSIIVHKNGKAYVERVTRLENVIQT 58 (143)
Q Consensus 28 ~~v~~Gd~v~v~~~~~l~~~rV~~V~~~~~~ 58 (143)
.++++||.|++...+....=+|.++..+...
T Consensus 164 ~~lk~GD~I~v~~~~~~~~Y~V~~~~vv~p~ 194 (235)
T 2xwg_A 164 NQLKKGDVFYVSSLGQTLKYEVNDITVVKPE 194 (235)
T ss_dssp GGCCTTCEEEEEETTEEEEEEEEEEEEECTT
T ss_pred hhCccCCEEEEEECCEEEEEEEEEEEEECCc
Confidence 5799999999988776677788887766533
No 51
>1gpp_A Endonuclease PI-SCEI; homing, protein splicing; 1.35A {Saccharomyces cerevisiae} SCOP: b.86.1.2
Probab=26.79 E-value=54 Score=25.93 Aligned_cols=31 Identities=16% Similarity=0.257 Sum_probs=22.9
Q ss_pred CCcceeeecccccCCEEEEeeCCceEEEEEEEEE
Q psy16497 20 SDIEYTYAERVRVNDSIIVHKNGKAYVERVTRLE 53 (143)
Q Consensus 20 ~~~~~vfA~~v~~Gd~v~v~~~~~l~~~rV~~V~ 53 (143)
.++..+--++|++||.|+-.++. |.+|+++.
T Consensus 21 ADGS~K~IEdI~vGD~Vmg~DG~---pR~V~~l~ 51 (237)
T 1gpp_A 21 ADGSIECIENIEVGNKVMGKDGR---PREVIKLP 51 (237)
T ss_dssp TTSCEEEGGGCCTTCEEEBTTSS---EEEEEECC
T ss_pred eCCCcceeeecccCCEEecCCCC---cceEEEec
Confidence 35566778999999999887764 55666654
No 52
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3oa6_A* 3ob9_A*
Probab=25.78 E-value=1.3e+02 Score=20.92 Aligned_cols=28 Identities=4% Similarity=0.131 Sum_probs=23.5
Q ss_pred ccccCCEEEEeeCC-----ceEEEEEEEEEEEE
Q psy16497 29 RVRVNDSIIVHKNG-----KAYVERVTRLENVI 56 (143)
Q Consensus 29 ~v~~Gd~v~v~~~~-----~l~~~rV~~V~~~~ 56 (143)
.+++|+.|++..++ .+..++|..|....
T Consensus 19 ~F~~GEkVLc~hgd~~k~~~lYeAKIl~v~~~~ 51 (110)
T 3m9p_A 19 KFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGK 51 (110)
T ss_dssp CSCTTCEEEEECSCTTSCCCEEEEEEEEEEEEE
T ss_pred cccCCCEEEEEcCCCCCCCCceeeEEEEEEecc
Confidence 46689999998874 68999999998765
No 53
>3rbj_A Sortase C1, sortase family protein; sortase fold, beta-barrel, LID-mutant, PILI BIOG hydrolase; 2.30A {Streptococcus agalactiae serogroup V} PDB: 3tb7_A 3rbi_A 3rbk_A 3tbe_A
Probab=24.99 E-value=1.1e+02 Score=23.62 Aligned_cols=33 Identities=15% Similarity=0.336 Sum_probs=25.3
Q ss_pred eeee--cccccCCEEEEeeCCceEEEEEEEEEEEE
Q psy16497 24 YTYA--ERVRVNDSIIVHKNGKAYVERVTRLENVI 56 (143)
Q Consensus 24 ~vfA--~~v~~Gd~v~v~~~~~l~~~rV~~V~~~~ 56 (143)
.+|+ .++++||.|++...+....=+|.++..+.
T Consensus 140 ~~F~~L~~lk~GD~I~v~~~~~~~~Y~V~~~~vV~ 174 (230)
T 3rbj_A 140 KLFTNLDKVTVGDRFYIEHIGGKIAYQVDQIKVIA 174 (230)
T ss_dssp CGGGSGGGCCTTCEEEEEETTEEEEEEEEEEEEEC
T ss_pred chhhhHHhCccCCEEEEEECCEEEEEEEEEEEEEC
Confidence 3454 57999999999987766777888877664
No 54
>2w1j_A Putative sortase, sortase C-1; pathogenicity, transferase; 1.24A {Streptococcus pneumoniae} PDB: 2wts_A 3re9_A
Probab=24.38 E-value=1.1e+02 Score=23.22 Aligned_cols=29 Identities=17% Similarity=0.328 Sum_probs=23.2
Q ss_pred cccccCCEEEEeeCCceEEEEEEEEEEEE
Q psy16497 28 ERVRVNDSIIVHKNGKAYVERVTRLENVI 56 (143)
Q Consensus 28 ~~v~~Gd~v~v~~~~~l~~~rV~~V~~~~ 56 (143)
.++++||.|++...+....=+|.++..+.
T Consensus 128 ~~l~~GD~i~v~~~~~~~~Y~V~~~~vv~ 156 (212)
T 2w1j_A 128 TKLKVGDKFYVHNIKEVMAYQVDQVKVIE 156 (212)
T ss_dssp GGCCTTCEEEEECSSCEEEEEEEEEEEEC
T ss_pred hhCccCCEEEEEECCEEEEEEEEEEEEEC
Confidence 57999999999887666777788877664
No 55
>2k1g_A Lipoprotein SPR; solution structure, bacterial lipoprotein, cysteine PEPT NPLC/P60 family, construct optimized, membrane, palmitate; NMR {Escherichia coli}
Probab=24.38 E-value=1.1e+02 Score=21.60 Aligned_cols=21 Identities=10% Similarity=0.150 Sum_probs=17.2
Q ss_pred cceeeecccccCCEEEEeeCC
Q psy16497 22 IEYTYAERVRVNDSIIVHKNG 42 (143)
Q Consensus 22 ~~~vfA~~v~~Gd~v~v~~~~ 42 (143)
.+.|--+++++||.|+...++
T Consensus 60 g~~V~~~~l~pGDLvFf~~~~ 80 (135)
T 2k1g_A 60 GKSVSRSNLRTGDLVLFRAGS 80 (135)
T ss_dssp SEEECGGGCCTTEEEEEEETT
T ss_pred CcEecHHHccCCcEEEECCCC
Confidence 467778999999999987654
No 56
>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens}
Probab=23.85 E-value=93 Score=22.07 Aligned_cols=30 Identities=7% Similarity=0.049 Sum_probs=22.9
Q ss_pred ceeeecccccCCEEEEeeCCceEEEEEEEEEEEE
Q psy16497 23 EYTYAERVRVNDSIIVHKNGKAYVERVTRLENVI 56 (143)
Q Consensus 23 ~~vfA~~v~~Gd~v~v~~~~~l~~~rV~~V~~~~ 56 (143)
-++-|+++|.|.+|.+.+ +|-+|+.++.+.
T Consensus 5 ~~i~~~~lrkG~~i~~~g----~p~~Vve~~~~K 34 (138)
T 3cpf_A 5 FPMQCSALRKNGFVVLKG----RPCKIVEMSTSK 34 (138)
T ss_dssp EEEEGGGCCTTSEEEETT----EEEEEEEEEEEC
T ss_pred EEEEHHHCcCCCEEEECC----EEEEEEEEEecc
Confidence 567899999999986643 577777776653
No 57
>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii}
Probab=23.54 E-value=52 Score=23.57 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=25.3
Q ss_pred eecccccCCEEEEe-----eCCceEEEEEEEEEEEEeee
Q psy16497 26 YAERVRVNDSIIVH-----KNGKAYVERVTRLENVIQTG 59 (143)
Q Consensus 26 fA~~v~~Gd~v~v~-----~~~~l~~~rV~~V~~~~~~G 59 (143)
|-.++++||.++.. +.+ -.+..|++|-++.+.+
T Consensus 34 ~lr~Mk~GD~~~fY~~~~~hs~-~~~~~ivGi~eV~~e~ 71 (147)
T 2p5d_A 34 TINKVKVGDKLIIYEIQRSGKD-YKPPYIRGVYEVVSEV 71 (147)
T ss_dssp HHTTCCTTCEEEEEECCBCSTT-CBCCEEEEEEEECSCC
T ss_pred HHHhCCCCCEEEEEEecccCCC-CCCCEEEEEEEEeccc
Confidence 56699999999999 544 2456888888887744
No 58
>2kw8_A LPXTG-SITE transpeptidase family protein; sortase, SRTA, protein binding; NMR {Bacillus anthracis}
Probab=23.51 E-value=1.2e+02 Score=21.47 Aligned_cols=36 Identities=22% Similarity=0.268 Sum_probs=26.1
Q ss_pred cccccCCEEEEeeCCceEEEEEEEEEEEEee--eeeec
Q psy16497 28 ERVRVNDSIIVHKNGKAYVERVTRLENVIQT--GVYAP 63 (143)
Q Consensus 28 ~~v~~Gd~v~v~~~~~l~~~rV~~V~~~~~~--G~yAP 63 (143)
.++++||.|++...+....=+|.++..+... -++.|
T Consensus 87 ~~l~~Gd~i~v~~~~~~~~Y~V~~~~~v~~~~~~v~~~ 124 (158)
T 2kw8_A 87 ASLKKGDKIYLYDNENEYEYAVTGVSEVTPDKWEVVED 124 (158)
T ss_dssp GGCCTTCEEEEECSSEEEEEEEEEEEEECSSCGGGTSC
T ss_pred hhCCcCCEEEEEECCcEEEEEEEEEEEECcccceeccC
Confidence 5789999999988766666777777766543 35555
No 59
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=23.41 E-value=1.8e+02 Score=19.79 Aligned_cols=28 Identities=7% Similarity=0.070 Sum_probs=23.0
Q ss_pred ccccCCEEEEeeC-----CceEEEEEEEEEEEE
Q psy16497 29 RVRVNDSIIVHKN-----GKAYVERVTRLENVI 56 (143)
Q Consensus 29 ~v~~Gd~v~v~~~-----~~l~~~rV~~V~~~~ 56 (143)
..++|+.|+...+ +.+..++|..|....
T Consensus 19 ~f~~GEkVLc~h~d~~kg~~lYeAKIl~v~~~~ 51 (101)
T 3m9q_A 19 LFHKGEIVLCYEPDKSKARVLYTSKVLNVFERR 51 (101)
T ss_dssp CCCTTCEEEEECCCTTSCCCEEEEEEEEEEEEE
T ss_pred cccCCCEEEEEecCCCCCCcceEeEEEEEEecC
Confidence 4568999999884 568999999998765
No 60
>2ot2_A Hydrogenase isoenzymes formation protein HYPC; beta barrel, chaperone; NMR {Escherichia coli K12} SCOP: b.40.14.1
Probab=23.30 E-value=36 Score=22.86 Aligned_cols=14 Identities=29% Similarity=0.453 Sum_probs=11.9
Q ss_pred cccccCCEEEEeeC
Q psy16497 28 ERVRVNDSIIVHKN 41 (143)
Q Consensus 28 ~~v~~Gd~v~v~~~ 41 (143)
.++++||+|++.-+
T Consensus 40 ~~~~vGD~VLVH~G 53 (90)
T 2ot2_A 40 GQPRVGQWVLVHVG 53 (90)
T ss_dssp SCBCTTCEEEEETT
T ss_pred CCCCCCCEEEEecC
Confidence 57899999999875
No 61
>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI; 1.60A {Leishmania braziliensis} SCOP: b.34.5.2 b.40.4.5 PDB: 1xtd_A
Probab=23.30 E-value=72 Score=23.83 Aligned_cols=29 Identities=10% Similarity=-0.022 Sum_probs=22.2
Q ss_pred ceeeecccccCCEEEEeeCCceEEEEEEEEEEE
Q psy16497 23 EYTYAERVRVNDSIIVHKNGKAYVERVTRLENV 55 (143)
Q Consensus 23 ~~vfA~~v~~Gd~v~v~~~~~l~~~rV~~V~~~ 55 (143)
-++-|+++|.|.+|.+.+ +|-+|+.++.+
T Consensus 29 ~~i~a~dlrkG~~I~idG----~p~~Vve~~~~ 57 (174)
T 1x6o_A 29 YPLAAGALKKGGYVCING----RPCKVIDLSVS 57 (174)
T ss_dssp EEEEGGGCCTTCEEEETT----EEEEEEEEEEC
T ss_pred EEEEHHHccCCCEEEECC----EEEEEEEEEec
Confidence 567899999999997654 57777777654
No 62
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=23.08 E-value=75 Score=23.19 Aligned_cols=27 Identities=19% Similarity=0.275 Sum_probs=18.8
Q ss_pred ecccccCCEEEEeeCC-ceEE-EEEEEEE
Q psy16497 27 AERVRVNDSIIVHKNG-KAYV-ERVTRLE 53 (143)
Q Consensus 27 A~~v~~Gd~v~v~~~~-~l~~-~rV~~V~ 53 (143)
+-.++.||.|.|..|. .-.. -+|.+|.
T Consensus 46 ~~~IkkGD~V~Vi~GkdKGk~~GkV~~V~ 74 (145)
T 2zkr_t 46 SMPIRKDDEVQVVRGHYKGQQIGKVVQVY 74 (145)
T ss_dssp CCBCCTTCEEEECSSTTTTCCSEEEEEEE
T ss_pred ccccCCCCEEEEeecCCCCcceeEEEEEE
Confidence 4579999999997762 2233 6777664
No 63
>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5
Probab=22.17 E-value=1e+02 Score=21.67 Aligned_cols=30 Identities=17% Similarity=0.264 Sum_probs=22.6
Q ss_pred ceeeecccccCCEEEEeeCCceEEEEEEEEEEEE
Q psy16497 23 EYTYAERVRVNDSIIVHKNGKAYVERVTRLENVI 56 (143)
Q Consensus 23 ~~vfA~~v~~Gd~v~v~~~~~l~~~rV~~V~~~~ 56 (143)
.++-|+++|.|.+|.+.+ +|-+|+.++.+.
T Consensus 7 ~~i~~~~lrkG~~i~~~g----~p~~Vve~~~~K 36 (136)
T 1bkb_A 7 KYVEAGELKEGSYVVIDG----EPCRVVEIEKSK 36 (136)
T ss_dssp EEEEGGGCCTTCEEEETT----EEEEEEEEEEEC
T ss_pred EEEEHHHccCCCEEEECC----EEEEEEEEEEec
Confidence 567899999999986643 577777776554
No 64
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=21.69 E-value=1e+02 Score=22.68 Aligned_cols=27 Identities=19% Similarity=0.282 Sum_probs=17.4
Q ss_pred ecccccCCEEEEeeCC-ceEEEEEEEEE
Q psy16497 27 AERVRVNDSIIVHKNG-KAYVERVTRLE 53 (143)
Q Consensus 27 A~~v~~Gd~v~v~~~~-~l~~~rV~~V~ 53 (143)
.-.|+.||.|.|..|. .-..-+|.+|.
T Consensus 46 s~~IkKGD~V~Vi~GkdKGk~GkVl~V~ 73 (150)
T 3iz5_Y 46 SIPIRKDDEVQVVRGSYKGREGKVVQVY 73 (150)
T ss_dssp EEECCSSSEEEECSSTTTTCEEEEEEEE
T ss_pred ccccCCCCEEEEeecCCCCccceEEEEE
Confidence 3478999999997652 22345555553
No 65
>2w1k_A Putative sortase; pilus, pneumococcus, pathogenicity, transferase; HET: MES; 2.14A {Streptococcus pneumoniae}
Probab=21.67 E-value=1.3e+02 Score=23.58 Aligned_cols=32 Identities=9% Similarity=0.257 Sum_probs=24.0
Q ss_pred eee--cccccCCEEEEeeCCceEEEEEEEEEEEE
Q psy16497 25 TYA--ERVRVNDSIIVHKNGKAYVERVTRLENVI 56 (143)
Q Consensus 25 vfA--~~v~~Gd~v~v~~~~~l~~~rV~~V~~~~ 56 (143)
+|+ .++++||.|++...+....=+|.++..+.
T Consensus 121 ~F~~L~~lk~GD~I~v~~~~~~~~Y~V~~~~vV~ 154 (252)
T 2w1k_A 121 FFRHLDQLKVGDALYYDNGQEIVEYQMMDTEIIL 154 (252)
T ss_dssp TTTTGGGCCTTCEEEEECSSEEEEEEEEEEEEEC
T ss_pred hhhCHhhCCCCCEEEEEECCEEEEEEEEEEEEEC
Confidence 454 47999999999887766667777776654
No 66
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.64 E-value=30 Score=23.09 Aligned_cols=29 Identities=3% Similarity=0.036 Sum_probs=23.2
Q ss_pred eecccccCCEEEEee-----CCceEEEEEEEEEE
Q psy16497 26 YAERVRVNDSIIVHK-----NGKAYVERVTRLEN 54 (143)
Q Consensus 26 fA~~v~~Gd~v~v~~-----~~~l~~~rV~~V~~ 54 (143)
....+.+|+.|++.. ++.+++++|.+|..
T Consensus 6 ~~~~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~ 39 (87)
T 2eko_A 6 SGGEIIEGCRLPVLRRNQDNEDEWPLAEILSVKD 39 (87)
T ss_dssp SSCSCCTTCEEEBCEECTTCCEECCEEEEEEECC
T ss_pred ccccccCCCEEEEEEcccCCCCeEEEEEEEEEEE
Confidence 356789999999976 44689999998774
No 67
>3rcc_A Sortase SRTA; sortase fold, beta-barrel, housekeeping sortase, surface Pro anchoring, PILI anchoring, PILI biogenesis; 3.10A {Streptococcus agalactiae serogroup V}
Probab=21.38 E-value=53 Score=23.72 Aligned_cols=54 Identities=13% Similarity=0.300 Sum_probs=32.5
Q ss_pred eeee--cccccCCEEEEeeCCceEEEEEEEEEEEEee--eeeecCCcceeEEEccEEEeeee
Q psy16497 24 YTYA--ERVRVNDSIIVHKNGKAYVERVTRLENVIQT--GVYAPLTTSGTIVVNNVFASCYA 81 (143)
Q Consensus 24 ~vfA--~~v~~Gd~v~v~~~~~l~~~rV~~V~~~~~~--G~yAPlT~~GtivVd~V~aSCya 81 (143)
.+|. .++++||.|++...+....=+|.++..+... .++.|-...-.| .+..|+-
T Consensus 73 ~~F~~L~~l~~GD~i~v~~~~~~~~Y~V~~~~vv~p~~~~~l~~~~~~~~l----tLiTC~p 130 (160)
T 3rcc_A 73 MLFSPLEHAKKGMKVYLTDKSKVYTYTITEISKVTPEHVEVIDDTPGKSQL----TLVTCTD 130 (160)
T ss_dssp -CCCGGGSCCTTCEECCBCSSCBCCEEEEEEEEECTTCCCCCCCCTTCCEE----EEEECSC
T ss_pred ccccchhhCccCCEEEEEECCEEEEEEEeeEEEECcccceeeccCCCCCEE----EEEeCCC
Confidence 3454 5899999999988765556677777666533 345543211111 4567764
No 68
>1mi8_A DNAB intein; all beta-strands, hydrolase; 2.00A {Synechocystis SP} SCOP: b.86.1.2
Probab=21.34 E-value=2.1e+02 Score=19.81 Aligned_cols=47 Identities=17% Similarity=-0.005 Sum_probs=30.2
Q ss_pred cceeeecccc--cCCEEEEeeC--CceEEEEEEEEEEEEeeeeeecCCcce
Q psy16497 22 IEYTYAERVR--VNDSIIVHKN--GKAYVERVTRLENVIQTGVYAPLTTSG 68 (143)
Q Consensus 22 ~~~vfA~~v~--~Gd~v~v~~~--~~l~~~rV~~V~~~~~~G~yAPlT~~G 68 (143)
++.+.-+++. .||.|+..+. +.+...+|..+-....+-+|-=-|..|
T Consensus 16 G~~~~I~el~~~~g~~V~s~d~~~g~~~~~~v~~~~~~~~~~~~~i~t~~G 66 (158)
T 1mi8_A 16 GKRVSIKDLLDEKDFEIWAINEQTMKLESAKVSRVFMTGKKLVYILKTRLG 66 (158)
T ss_dssp TEEEESGGGTTCCSCEEEEEETTTTEEEEEECCEEEEEEEEEEEEEEETTC
T ss_pred CeEEEHHHhhhccCCEEEEEeCCCCEEEEEEeeeeeecCCceEEEEEECCC
Confidence 3456666776 7999998885 467777777766544444554444455
No 69
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=21.22 E-value=96 Score=22.15 Aligned_cols=26 Identities=15% Similarity=0.328 Sum_probs=16.7
Q ss_pred cccccCCEEEEeeCC-ceEEEEEEEEE
Q psy16497 28 ERVRVNDSIIVHKNG-KAYVERVTRLE 53 (143)
Q Consensus 28 ~~v~~Gd~v~v~~~~-~l~~~rV~~V~ 53 (143)
-.++.||.|.|..|. .-..-+|..|.
T Consensus 48 ~~IkkgD~V~Vi~GkdKGk~GkV~~V~ 74 (127)
T 3u5e_Y 48 LPIRRDDEVLVVRGSKKGQEGKISSVY 74 (127)
T ss_dssp EECCTTCEEEECSSTTTTCEEEEEEEE
T ss_pred ccccCCCEEEEeecCCCCccceEEEEE
Confidence 478999999997652 22335555543
No 70
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain, histone deacetylase; HET: M2L; NMR {Saccharomyces cerevisiae}
Probab=21.00 E-value=1.2e+02 Score=21.75 Aligned_cols=26 Identities=4% Similarity=0.236 Sum_probs=23.0
Q ss_pred ccccCCEEEEeeCCceEEEEEEEEEE
Q psy16497 29 RVRVNDSIIVHKNGKAYVERVTRLEN 54 (143)
Q Consensus 29 ~v~~Gd~v~v~~~~~l~~~rV~~V~~ 54 (143)
.+.+|+.|+...+..+..++|.+|..
T Consensus 9 ~f~~gekvl~~hg~llYeAKVl~v~~ 34 (136)
T 2k3y_A 9 EFALGGRVLAFHGPLMYEAKILKIWD 34 (136)
T ss_dssp SCCTTSEEEEECSSCEEEEEEEEEEE
T ss_pred ccCCCCEEEEEECCeeEEEEEEEEEe
Confidence 46799999999987899999999885
No 71
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=20.69 E-value=1.1e+02 Score=22.09 Aligned_cols=26 Identities=23% Similarity=0.368 Sum_probs=16.9
Q ss_pred cccccCCEEEEeeCC-ceEEEEEEEEE
Q psy16497 28 ERVRVNDSIIVHKNG-KAYVERVTRLE 53 (143)
Q Consensus 28 ~~v~~Gd~v~v~~~~-~l~~~rV~~V~ 53 (143)
-.|+.||.|.|..|. .-+.-+|..|.
T Consensus 47 ~~IkkgD~V~Vi~GkdKGk~GkV~~V~ 73 (135)
T 4a17_S 47 MPVRKDDEVLIVRGKFKGNKGKVTQVY 73 (135)
T ss_dssp EECCTTCEEEECSSTTTTCEEEEEEEE
T ss_pred ccccCCCEEEEeecCCCCceeeEEEEE
Confidence 368999999997652 22345555553
No 72
>2q22_A Uncharacterized protein; YP_323524.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PG4; 2.11A {Anabaena variabilis atcc 29413} SCOP: d.365.1.1
Probab=20.53 E-value=53 Score=23.84 Aligned_cols=18 Identities=22% Similarity=0.462 Sum_probs=14.2
Q ss_pred CcceeEEEc-------cEEEeeeee
Q psy16497 65 TTSGTIVVN-------NVFASCYAV 82 (143)
Q Consensus 65 T~~GtivVd-------~V~aSCya~ 82 (143)
|..|++.|+ ||+.||.+.
T Consensus 97 ~~tg~~yl~~y~G~~rGVLiscq~~ 121 (139)
T 2q22_A 97 GKNGLCYLDSYAGHHRGVLVSCQSY 121 (139)
T ss_dssp TTTCCEEEEECCSCCBEEEEEEECS
T ss_pred CCCCcEEEEecCCCccEEEEecccC
Confidence 366777777 999999984
Done!