RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy16497
         (143 letters)



>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol
           transfer, signaling protein; 1.90A {Drosophila
           melanogaster} SCOP: b.86.1.1
          Length = 145

 Score = 75.1 bits (184), Expect = 2e-18
 Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 7/83 (8%)

Query: 1   MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVH--KNGKAYVERVTRLENVIQT 58
           +TP+HL+  W   +       + + +A+R+   + ++V   + G+   +RV ++ +V   
Sbjct: 68  VTPAHLVSVWQPES-----QKLTFVFADRIEEKNQVLVRDVETGELRPQRVVKVGSVRSK 122

Query: 59  GVYAPLTTSGTIVVNNVFASCYA 81
           GV APLT  GTIVVN+V ASCYA
Sbjct: 123 GVVAPLTREGTIVVNSVAASCYA 145


>3cxe_C Granulocyte-macrophage colony-stimulating factor subunit alpha;
          GM-CSF, receptor complex, dodecamer, disease mutation,
          glyco membrane; HET: NAG BMA; 3.30A {Homo sapiens}
          Length = 120

 Score = 26.6 bits (58), Expect = 2.3
 Identities = 10/58 (17%), Positives = 21/58 (36%)

Query: 1  MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVHKNGKAYVERVTRLENVIQT 58
             +H ++RW +P     LS +++ Y   V   ++    +N    V           +
Sbjct: 28 CNTTHCLVRWKQPRTYQKLSYLDFQYQLDVHRKNTQPGTENLLINVSGDLENRYNFPS 85


>3rcc_A Sortase SRTA; sortase fold, beta-barrel, housekeeping sortase,
           surface Pro anchoring, PILI anchoring, PILI biogenesis;
           3.10A {Streptococcus agalactiae serogroup V}
          Length = 160

 Score = 25.9 bits (57), Expect = 4.0
 Identities = 7/45 (15%), Positives = 16/45 (35%)

Query: 11  HRPNAKSILSDIEYTYAERVRVNDSIIVHKNGKAYVERVTRLENV 55
           H     +  S + ++  E  +    + +    K Y   +T +  V
Sbjct: 62  HHVFGLTGSSKMLFSPLEHAKKGMKVYLTDKSKVYTYTITEISKV 106


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 25.8 bits (56), Expect = 7.5
 Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 5/37 (13%)

Query: 23   EYT----YAERVRVNDSI-IVHKNGKAYVERVTRLEN 54
            EY      A+ + +   + +V   G      V R E 
Sbjct: 1766 EYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDEL 1802


>3fn5_A Sortase A; sortase-fold, hydrolase; HET: EPE; 1.50A {Streptococcus
           pyogenes serotype M1} PDB: 3fn6_A 3fn7_A
          Length = 187

 Score = 25.2 bits (55), Expect = 8.6
 Identities = 9/45 (20%), Positives = 17/45 (37%)

Query: 11  HRPNAKSILSDIEYTYAERVRVNDSIIVHKNGKAYVERVTRLENV 55
           H     +  S + ++  ER +   SI +    K Y   +  +  V
Sbjct: 80  HHIFGITGSSQMLFSPLERAQNGMSIYLTDKEKIYEYIIKDVFTV 124


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.134    0.412 

Gapped
Lambda     K      H
   0.267   0.0665    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,210,641
Number of extensions: 118169
Number of successful extensions: 202
Number of sequences better than 10.0: 1
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 10
Length of query: 143
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 59
Effective length of database: 4,356,429
Effective search space: 257029311
Effective search space used: 257029311
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (23.9 bits)