RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16497
         (143 letters)



>d1at0a_ b.86.1.1 (A:) Hedgehog {Fruit fly (Drosophila melanogaster)
           [TaxId: 7227]}
          Length = 145

 Score = 64.5 bits (156), Expect = 1e-14
 Identities = 30/83 (36%), Positives = 49/83 (59%), Gaps = 7/83 (8%)

Query: 1   MTPSHLILRWHRPNAKSILSDIEYTYAERVRVNDSIIVH--KNGKAYVERVTRLENVIQT 58
           +TP+HL+  W   +       + + +A+R+   + ++V   + G+   +RV ++ +V   
Sbjct: 68  VTPAHLVSVWQPES-----QKLTFVFADRIEEKNQVLVRDVETGELRPQRVVKVGSVRSK 122

Query: 59  GVYAPLTTSGTIVVNNVFASCYA 81
           GV APLT  GTIVVN+V ASCYA
Sbjct: 123 GVVAPLTREGTIVVNSVAASCYA 145


>d1vqot1 b.34.5.1 (T:1-119) Ribosomal proteins L24 (L24p) {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 119

 Score = 25.8 bits (57), Expect = 1.1
 Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 1/37 (2%)

Query: 37  IVHKNGKAYVERVTRLENVIQTGVYAPLTTSGTIVVN 73
           +       +VE VT  E      V  PL TS   V +
Sbjct: 65  VDLDKAVIHVEDVTL-EKTDGEEVPRPLDTSNVRVTD 100


>d1r5ya_ c.1.20.1 (A:) Queosine tRNA-guanine transglycosylase
          {Zymomonas mobilis [TaxId: 542]}
          Length = 372

 Score = 24.4 bits (52), Expect = 6.0
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 6/37 (16%)

Query: 37 IVHKNGKAYVERVTRLE---NVIQTGVYAPLTTSGTI 70
          I  + GKA   R   +E    VI+T  + P+ T+ T+
Sbjct: 8  IAAREGKA---RTGTIEMKRGVIRTPAFMPVGTAATV 41


>d1p1ja1 c.2.1.3 (A:9-322,A:438-533) Myo-inositol 1-phosphate
           synthase {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 410

 Score = 24.0 bits (52), Expect = 7.7
 Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 4/45 (8%)

Query: 62  APLTTSGTIVVNNVFASCYAVIDNQFLAHLSFIP---VRLYHSLV 103
           APLT  G   VN +     A ++N     +       +R    L+
Sbjct: 367 APLTRPGFHPVNGLNKQRTA-LENFLRLLIGLPSQNELRFEERLL 410


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.134    0.412 

Gapped
Lambda     K      H
   0.267   0.0685    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 548,348
Number of extensions: 22453
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 7
Length of query: 143
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 66
Effective length of database: 1,350,386
Effective search space: 89125476
Effective search space used: 89125476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.4 bits)