BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16498
(102 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N1R|A Chain A, Crystal Structure Of Shhn
Length = 160
Score = 140 bits (352), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 61/73 (83%), Positives = 69/73 (94%)
Query: 1 MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
MN+WPGV+LRV EGWDE+GHH+ +SLHYEGRAVDITTSDRD SKYG+LAR+AVEAGFDWV
Sbjct: 80 MNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWV 139
Query: 61 YYESRNHIHCSVK 73
YYES+ HIHCSVK
Sbjct: 140 YYESKAHIHCSVK 152
>pdb|1VHH|A Chain A, A Potential Catalytic Site Within The Amino-Terminal
Signalling Domain Of Sonic Hedgehog
Length = 162
Score = 140 bits (352), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 61/73 (83%), Positives = 69/73 (94%)
Query: 1 MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
MN+WPGV+LRV EGWDE+GHH+ +SLHYEGRAVDITTSDRD SKYG+LAR+AVEAGFDWV
Sbjct: 82 MNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWV 141
Query: 61 YYESRNHIHCSVK 73
YYES+ HIHCSVK
Sbjct: 142 YYESKAHIHCSVK 154
>pdb|2WG4|A Chain A, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog Without
Calcium
Length = 155
Score = 140 bits (352), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 61/73 (83%), Positives = 69/73 (94%)
Query: 1 MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
MN+WPGV+LRV EGWDE+GHH+ +SLHYEGRAVDITTSDRD SKYG+LAR+AVEAGFDWV
Sbjct: 76 MNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWV 135
Query: 61 YYESRNHIHCSVK 73
YYES+ HIHCSVK
Sbjct: 136 YYESKAHIHCSVK 148
>pdb|3HO5|H Chain H, Crystal Structure Of Hedgehog-interacting Protein (hhip)
And Sonic Hedgehog (shh) Complex
pdb|3MXW|A Chain A, Crystal Structure Sonic Hedgehog Bound To The 5e1 Fab
Fragment
Length = 169
Score = 139 bits (351), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 61/73 (83%), Positives = 69/73 (94%)
Query: 1 MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
MN+WPGV+LRV EGWDE+GHH+ +SLHYEGRAVDITTSDRD SKYG+LAR+AVEAGFDWV
Sbjct: 86 MNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWV 145
Query: 61 YYESRNHIHCSVK 73
YYES+ HIHCSVK
Sbjct: 146 YYESKAHIHCSVK 158
>pdb|2WFX|A Chain A, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Sonic Hedgehog In The
Presence Of Calcium
Length = 152
Score = 139 bits (351), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 61/73 (83%), Positives = 69/73 (94%)
Query: 1 MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
MN+WPGV+LRV EGWDE+GHH+ +SLHYEGRAVDITTSDRD SKYG+LAR+AVEAGFDWV
Sbjct: 76 MNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWV 135
Query: 61 YYESRNHIHCSVK 73
YYES+ HIHCSVK
Sbjct: 136 YYESKAHIHCSVK 148
>pdb|3M1N|A Chain A, Crystal Structure Of Human Sonic Hedgehog N-Terminal
Domain
pdb|3M1N|B Chain B, Crystal Structure Of Human Sonic Hedgehog N-Terminal
Domain
Length = 175
Score = 139 bits (351), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 61/73 (83%), Positives = 69/73 (94%)
Query: 1 MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
MN+WPGV+LRV EGWDE+GHH+ +SLHYEGRAVDITTSDRD SKYG+LAR+AVEAGFDWV
Sbjct: 92 MNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWV 151
Query: 61 YYESRNHIHCSVK 73
YYES+ HIHCSVK
Sbjct: 152 YYESKAHIHCSVK 164
>pdb|2WFQ|A Chain A, Crystal Structure Of The N-terminal Signalling Domain Of
Human Dhh Without Calcium
pdb|2WFR|A Chain A, Crystal Structure Of The N-Terminal Signalling Domain Of
Human Dhh With Calcium
Length = 165
Score = 139 bits (350), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 63/74 (85%), Positives = 68/74 (91%)
Query: 1 MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
MN WPGVRLRV EGWDE+GHHA DSLHYEGRA+DITTSDRD +KYGLLAR+AVEAGFDWV
Sbjct: 77 MNMWPGVRLRVTEGWDEDGHHAQDSLHYEGRALDITTSDRDRNKYGLLARLAVEAGFDWV 136
Query: 61 YYESRNHIHCSVKT 74
YYESRNH+H SVK
Sbjct: 137 YYESRNHVHVSVKA 150
>pdb|2WG3|A Chain A, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
pdb|2WG3|B Chain B, Crystal Structure Of The Complex Between Human Hedgehog-
Interacting Protein Hip And Desert Hedgehog Without
Calcium
Length = 164
Score = 139 bits (350), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 63/74 (85%), Positives = 68/74 (91%)
Query: 1 MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
MN WPGVRLRV EGWDE+GHHA DSLHYEGRA+DITTSDRD +KYGLLAR+AVEAGFDWV
Sbjct: 77 MNMWPGVRLRVTEGWDEDGHHAQDSLHYEGRALDITTSDRDRNKYGLLARLAVEAGFDWV 136
Query: 61 YYESRNHIHCSVKT 74
YYESRNH+H SVK
Sbjct: 137 YYESRNHVHVSVKA 150
>pdb|3D1M|A Chain A, Crystal Structure Of Sonic Hedgehog Bound To The Third
Fniii Domain Of Cdo
pdb|3D1M|B Chain B, Crystal Structure Of Sonic Hedgehog Bound To The Third
Fniii Domain Of Cdo
Length = 168
Score = 139 bits (350), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 61/73 (83%), Positives = 69/73 (94%)
Query: 1 MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
MN+WPGV+LRV EGWDE+GHH+ +SLHYEGRAVDITTSDRD SKYG+LAR+AVEAGFDWV
Sbjct: 94 MNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWV 153
Query: 61 YYESRNHIHCSVK 73
YYES+ HIHCSVK
Sbjct: 154 YYESKAHIHCSVK 166
>pdb|3N1G|B Chain B, Crystal Structure Of Dhhn Bound To Bocfn3
pdb|3N1G|A Chain A, Crystal Structure Of Dhhn Bound To Bocfn3
pdb|3N1Q|B Chain B, Crystal Structure Of Dhhn Bound To Cdofn3
pdb|3N1Q|A Chain A, Crystal Structure Of Dhhn Bound To Cdofn3
pdb|3N1Q|E Chain E, Crystal Structure Of Dhhn Bound To Cdofn3
Length = 170
Score = 139 bits (350), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 63/74 (85%), Positives = 68/74 (91%)
Query: 1 MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
MN WPGVRLRV EGWDE+GHHA DSLHYEGRA+DITTSDRD +KYGLLAR+AVEAGFDWV
Sbjct: 96 MNMWPGVRLRVTEGWDEDGHHAQDSLHYEGRALDITTSDRDRNKYGLLARLAVEAGFDWV 155
Query: 61 YYESRNHIHCSVKT 74
YYESRNH+H SVK
Sbjct: 156 YYESRNHVHVSVKA 169
>pdb|3K7J|B Chain B, Crystal Structure Of The D100e Mutant Of The Indian
Hedgehog N- Terminal Signalling Domain
Length = 187
Score = 139 bits (349), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 70/74 (94%)
Query: 1 MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
MN+WPGV+LRV EGWDE+GHH+ +SLHYEGRAVDITTSDRD +KYGLLAR+AVEAGFDWV
Sbjct: 104 MNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRNKYGLLARLAVEAGFDWV 163
Query: 61 YYESRNHIHCSVKT 74
YYES+ H+HCSVK+
Sbjct: 164 YYESKAHVHCSVKS 177
>pdb|3K7H|B Chain B, Crystal Structure Of The E95k Mutant Of The Indian
Hedgehog N-Terminal Signalling Domain
Length = 187
Score = 139 bits (349), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 70/74 (94%)
Query: 1 MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
MN+WPGV+LRV EGWDE+GHH+ +SLHYEGRAVDITTSDRD +KYGLLAR+AVEAGFDWV
Sbjct: 104 MNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRNKYGLLARLAVEAGFDWV 163
Query: 61 YYESRNHIHCSVKT 74
YYES+ H+HCSVK+
Sbjct: 164 YYESKAHVHCSVKS 177
>pdb|3K7G|B Chain B, Crystal Structure Of The Indian Hedgehog N-Terminal
Signalling Domain
Length = 187
Score = 139 bits (349), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 70/74 (94%)
Query: 1 MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
MN+WPGV+LRV EGWDE+GHH+ +SLHYEGRAVDITTSDRD +KYGLLAR+AVEAGFDWV
Sbjct: 104 MNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRNKYGLLARLAVEAGFDWV 163
Query: 61 YYESRNHIHCSVKT 74
YYES+ H+HCSVK+
Sbjct: 164 YYESKAHVHCSVKS 177
>pdb|3N1F|A Chain A, Crystal Structure Of Ihhn Bound To Cdofn3
pdb|3N1F|B Chain B, Crystal Structure Of Ihhn Bound To Cdofn3
pdb|3N1M|B Chain B, Crystal Structure Of Ihhn Bound To Bocfn3
pdb|3N1O|A Chain A, Crystal Structure Of Ihhn
pdb|3N1O|B Chain B, Crystal Structure Of Ihhn
pdb|3N1O|C Chain C, Crystal Structure Of Ihhn
pdb|3N1P|B Chain B, Crystal Structure Of Ihhn Bound To Bocfn3
Length = 169
Score = 139 bits (349), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 60/74 (81%), Positives = 70/74 (94%)
Query: 1 MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
MN+WPGV+LRV EGWDE+GHH+ +SLHYEGRAVDITTSDRD +KYGLLAR+AVEAGFDWV
Sbjct: 95 MNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRNKYGLLARLAVEAGFDWV 154
Query: 61 YYESRNHIHCSVKT 74
YYES+ H+HCSVK+
Sbjct: 155 YYESKAHVHCSVKS 168
>pdb|3K7I|B Chain B, Crystal Structure Of The E131k Mutant Of The Indian
Hedgehog N- Terminal Signalling Domain
Length = 187
Score = 137 bits (345), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 59/74 (79%), Positives = 70/74 (94%)
Query: 1 MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
MN+WPGV+LRV +GWDE+GHH+ +SLHYEGRAVDITTSDRD +KYGLLAR+AVEAGFDWV
Sbjct: 104 MNQWPGVKLRVTKGWDEDGHHSEESLHYEGRAVDITTSDRDRNKYGLLARLAVEAGFDWV 163
Query: 61 YYESRNHIHCSVKT 74
YYES+ H+HCSVK+
Sbjct: 164 YYESKAHVHCSVKS 177
>pdb|2IBG|E Chain E, Crystal Structure Of Hedgehog Bound To The Fniii Domains
Of Ihog
pdb|2IBG|F Chain F, Crystal Structure Of Hedgehog Bound To The Fniii Domains
Of Ihog
pdb|2IBG|G Chain G, Crystal Structure Of Hedgehog Bound To The Fniii Domains
Of Ihog
pdb|2IBG|H Chain H, Crystal Structure Of Hedgehog Bound To The Fniii Domains
Of Ihog
Length = 150
Score = 122 bits (305), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 55/74 (74%), Positives = 62/74 (83%)
Query: 1 MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
MNEWPG+RL V E WDE+ HH +SLHYEGRAV I TSDRD SKYG+LAR+AVEAGFDWV
Sbjct: 76 MNEWPGIRLLVTESWDEDYHHGQESLHYEGRAVTIATSDRDQSKYGMLARLAVEAGFDWV 135
Query: 61 YYESRNHIHCSVKT 74
Y SR HI+CSVK+
Sbjct: 136 SYVSRRHIYCSVKS 149
>pdb|3B9Q|A Chain A, The Crystal Structure Of Cpftsy From Arabidopsis Thaliana
Length = 302
Score = 29.3 bits (64), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Query: 22 ASDSLHY--EGRAVDITTSDRDSSKYGLLARMAV----EAGFDWVYYESRNHIHCSVKTV 75
ASD L E +I ++ D +K + AV E G+D V ++ +H + +
Sbjct: 143 ASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLM 202
Query: 76 LDMVGIASALWALGRGFPPGVDFILNG 102
+++ A+ + G P + +L+G
Sbjct: 203 EELIACKKAVGKIVSGAPNEILLVLDG 229
>pdb|2OG2|A Chain A, Crystal Structure Of Chloroplast Ftsy From Arabidopsis
Thaliana
Length = 359
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Query: 22 ASDSLHY--EGRAVDITTSDRDSSKYGLLARMAV----EAGFDWVYYESRNHIHCSVKTV 75
ASD L E +I ++ D +K + AV E G+D V ++ +H + +
Sbjct: 200 ASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLM 259
Query: 76 LDMVGIASALWALGRGFPPGVDFILNG 102
+++ A+ + G P + +L+G
Sbjct: 260 EELIACKKAVGKIVSGAPNEILLVLDG 286
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,516,238
Number of Sequences: 62578
Number of extensions: 120002
Number of successful extensions: 315
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 293
Number of HSP's gapped (non-prelim): 26
length of query: 102
length of database: 14,973,337
effective HSP length: 67
effective length of query: 35
effective length of database: 10,780,611
effective search space: 377321385
effective search space used: 377321385
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)