Query psy16498
Match_columns 102
No_of_seqs 101 out of 422
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 22:49:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16498.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/16498hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3n1g_B Desert hedgehog protein 100.0 1.4E-29 4.7E-34 187.3 7.5 74 2-75 97-170 (170)
2 3k7i_B IHH, HHG-2, indian hedg 99.9 1.5E-27 5.1E-32 178.1 7.8 79 1-79 104-182 (187)
3 2ibg_E Protein hedgehog, GH039 99.9 2.8E-24 9.5E-29 156.3 7.1 75 1-75 76-150 (150)
4 1lbu_A Muramoyl-pentapeptide c 99.7 1.2E-19 4.2E-24 134.0 1.1 70 4-76 125-204 (213)
5 1xp2_A EAD500, PLY500, L-alany 97.8 2.6E-05 8.9E-10 57.8 4.6 69 5-73 51-149 (179)
6 2vo9_A EAD500, L-alanyl-D-glut 97.6 0.00014 4.8E-09 53.0 6.0 68 6-73 52-149 (179)
7 4f78_A D,D-dipeptidase/D,D-car 95.2 0.0062 2.1E-07 46.9 1.4 33 6-38 65-119 (255)
8 1r44_A D-alanyl-D-alanine dipe 79.6 1.2 4.2E-05 32.8 2.8 33 6-38 61-127 (202)
9 2fsu_A Protein PHNH; C-P lyase 52.5 5.9 0.0002 29.5 1.7 18 84-101 175-193 (210)
10 4gbu_A NADPH dehydrogenase 1; 31.1 31 0.0011 27.0 2.8 23 45-67 174-197 (400)
11 4a3u_A NCR, NADH\:flavin oxido 28.3 36 0.0012 26.2 2.7 16 45-60 154-169 (358)
12 2hiy_A Hypothetical protein; C 24.5 47 0.0016 23.5 2.6 37 38-74 17-54 (183)
13 3l5a_A NADH/flavin oxidoreduct 21.5 60 0.002 25.8 2.8 16 45-60 172-187 (419)
No 1
>3n1g_B Desert hedgehog protein; binding sites, calcium, cell adhesion molecules, cell cycle cell LINE, conserved sequence, fibronectins; 1.90A {Homo sapiens} SCOP: d.65.1.2 PDB: 3n1q_B
Probab=99.96 E-value=1.4e-29 Score=187.33 Aligned_cols=74 Identities=84% Similarity=1.419 Sum_probs=70.2
Q ss_pred CCCCCCeEEEeeeeCCCCCCCCCCcCcceeEEEEEeCCCCcchHHHHHHHHHHcCCCeEEEcCCCeEEEeecCC
Q psy16498 2 NEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWVYYESRNHIHCSVKTV 75 (102)
Q Consensus 2 ~e~~G~Pi~VtSGYR~p~~N~~~S~H~~GrAaDI~~~~~~~~~~~~L~~~A~~~gFd~v~Y~~~~fVHvdv~~~ 75 (102)
++|.|+||+||||||||++|+++|+||+|+||||++++.+..++++|+++|+++|||||+|++++||||||+++
T Consensus 97 ~~~~g~pi~V~SGYRsp~~Na~~SlH~~GrAaDI~~~~~~~~k~~~La~~A~~~gfd~V~Y~~~~fVHvsvk~~ 170 (170)
T 3n1g_B 97 NMWPGVRLRVTEGWDEDGHHAQDSLHYEGRALDITTSDRDRNKYGLLARLAVEAGFDWVYYESRNHVHVSVKAD 170 (170)
T ss_dssp HHSTTCCEEEEESSCCSCCSCTTCGGGGTCEEEEEETTCCGGGHHHHHHHHHHTTCSEEECCCSSCEEEECCCC
T ss_pred cccCCCcEEEEecccCccccCCcCchheeEEEEEEeCCccHHHHHHHHHHHHHCCCCEEEeCCCCEEEEEEeCC
Confidence 46789999999999999999999999999999999999998889899999999999999999999999999875
No 2
>3k7i_B IHH, HHG-2, indian hedgehog protein; alpha+beta sandwich, autocatalytic cleavage, cell membrane, developmental protein, disease mutation; 1.44A {Homo sapiens} PDB: 3k7g_B 3k7j_B 3k7h_B 3n1f_A 3n1m_B 3n1o_A 3n1p_B 3m1n_A 3mxw_A 3ho5_H 1vhh_A 3d1m_A 3n1r_A 2wg4_A 2wfx_A 2wfq_A 2wfr_A 2wg3_A*
Probab=99.94 E-value=1.5e-27 Score=178.12 Aligned_cols=79 Identities=75% Similarity=1.360 Sum_probs=75.8
Q ss_pred CCCCCCCeEEEeeeeCCCCCCCCCCcCcceeEEEEEeCCCCcchHHHHHHHHHHcCCCeEEEcCCCeEEEeecCCcccc
Q psy16498 1 MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWVYYESRNHIHCSVKTVLDMV 79 (102)
Q Consensus 1 ~~e~~G~Pi~VtSGYR~p~~N~~~S~H~~GrAaDI~~~~~~~~~~~~L~~~A~~~gFd~v~Y~~~~fVHvdv~~~~~~~ 79 (102)
|+||+|+||+||+||||+.+|.++|+|++||||||++++++..++++|+++|+++|||||+|+.++|||++|+++..+.
T Consensus 104 ~nqwpGvkLRVtegwde~~hh~~~SLHyEGRAvDIttsdrd~~k~g~LarLAveAGFDwV~Y~sr~~IH~SVk~d~~~~ 182 (187)
T 3k7i_B 104 MNQWPGVKLRVTKGWDEDGHHSEESLHYEGRAVDITTSDRDRNKYGLLARLAVEAGFDWVYYESKAHVHCSVKSEHSAA 182 (187)
T ss_dssp HHHSTTCCEEEEECCCSSCCSCTTCGGGGTCEEEEEETTCCGGGHHHHHHHHHHTTCSEEEEEETTEEEEECCCSSSCC
T ss_pred HHhcCCceEEEeecccCCCCCCcccccccceeeEEEecccchhHHHHHHHHHHHcCCCEEEeccCCeEEEEeccchhhh
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999987765
No 3
>2ibg_E Protein hedgehog, GH03927P; IHOG, fibronectin type III, protein binding; 2.20A {Drosophila melanogaster} SCOP: d.65.1.2
Probab=99.90 E-value=2.8e-24 Score=156.35 Aligned_cols=75 Identities=73% Similarity=1.241 Sum_probs=71.8
Q ss_pred CCCCCCCeEEEeeeeCCCCCCCCCCcCcceeEEEEEeCCCCcchHHHHHHHHHHcCCCeEEEcCCCeEEEeecCC
Q psy16498 1 MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWVYYESRNHIHCSVKTV 75 (102)
Q Consensus 1 ~~e~~G~Pi~VtSGYR~p~~N~~~S~H~~GrAaDI~~~~~~~~~~~~L~~~A~~~gFd~v~Y~~~~fVHvdv~~~ 75 (102)
|+||+|++|+|++||+++.+-.++|+|++|||+||++++++..++++|+++|.++|||||+|+.+++|||||+++
T Consensus 76 ~~~w~gv~lrVteawd~~~~~~~~SLHyeGRAvdit~sd~d~~k~g~La~lAv~aGFDwV~y~~~~~ih~SV~~d 150 (150)
T 2ibg_E 76 MNEWPGIRLLVTESWDEDYHHGQESLHYEGRAVTIATSDRDQSKYGMLARLAVEAGFDWVSYVSRRHIYCSVKSD 150 (150)
T ss_dssp HHHSTTCCEEEEESSCSSCCSCSCCGGGGTCEEEEEETTCCGGGHHHHHHHHHHHTCSEEECCCSSCEEEECCCC
T ss_pred HHHcCCceEEEEEcccCCCCCCCccccccceeEEEEecCCChHHHHHHHHHHHHcCCCEEEeCCCCEEEEEEecC
Confidence 578999999999999999988899999999999999999999999999999999999999999999999999975
No 4
>1lbu_A Muramoyl-pentapeptide carboxypeptidase; hydrolase, nuclear receptor; 1.80A {Streptomyces albus} SCOP: a.20.1.1 d.65.1.1
Probab=99.75 E-value=1.2e-19 Score=133.95 Aligned_cols=70 Identities=23% Similarity=0.279 Sum_probs=60.8
Q ss_pred CCC-CeEEEeeeeCCCCCCC-----CCCcCcceeEEEEEeCCCCcchHHHHHHHHHHcCCCeEE----EcCCCeEEEeec
Q psy16498 4 WPG-VRLRVIEGWDEEGHHA-----SDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWVY----YESRNHIHCSVK 73 (102)
Q Consensus 4 ~~G-~Pi~VtSGYR~p~~N~-----~~S~H~~GrAaDI~~~~~~~~~~~~L~~~A~~~gFd~v~----Y~~~~fVHvdv~ 73 (102)
.+| .||.|+||||||.+|+ ++|+||.|+|+||.+++.. ..+|+++|+.++|++|+ |++++|||||++
T Consensus 125 ~~g~~~i~V~sgyR~~~~N~~vgg~~~s~H~~G~A~D~~v~~~~---~~~l~~~~~~~~~~gvg~~~~~~~~~fvH~d~~ 201 (213)
T 1lbu_A 125 AMGDKPITVNGGFRSVTCNSNVGGASNSRHMYGHAADLGAGSQG---FCALAQAARNHGFTEILGPGYPGHNDHTHVAGG 201 (213)
T ss_dssp HTTSCCCCEEECCCCHHHHHHHTCCTTCGGGGTCEEEECCTTTC---HHHHHHHGGGTTCSEEECTTSTTCSSSEEEECS
T ss_pred hcCCCCeEeccccCCHHHccccCCCCCCCCCCceEeeeCCCCcC---HHHHHHHHHHCCCCeEecCCcCCCCCeEEeCCC
Confidence 345 7999999999999996 8999999999999997654 56888999999999998 566689999999
Q ss_pred CCc
Q psy16498 74 TVL 76 (102)
Q Consensus 74 ~~~ 76 (102)
+..
T Consensus 202 ~~r 204 (213)
T 1lbu_A 202 DGR 204 (213)
T ss_dssp SSC
T ss_pred CCC
Confidence 743
No 5
>1xp2_A EAD500, PLY500, L-alanyl-D-glutamate peptidase; hydrolase; 1.80A {Bacteriophage A500} PDB: 2vo9_A
Probab=97.76 E-value=2.6e-05 Score=57.82 Aligned_cols=69 Identities=23% Similarity=0.410 Sum_probs=49.9
Q ss_pred CCCeEEEeeeeCCCC-----------------CCC--CCCcCcceeEEEEEeC---CC----C--cchHHHHHHHHHHcC
Q psy16498 5 PGVRLRVIEGWDEEG-----------------HHA--SDSLHYEGRAVDITTS---DR----D--SSKYGLLARMAVEAG 56 (102)
Q Consensus 5 ~G~Pi~VtSGYR~p~-----------------~N~--~~S~H~~GrAaDI~~~---~~----~--~~~~~~L~~~A~~~g 56 (102)
-|.+|.|+||||+++ +|+ ..|.|..|.|+||... +. + ...+.++.++++++|
T Consensus 51 ~Gi~l~v~sGyRS~e~Q~~Ly~~g~s~~G~~vt~A~pg~S~H~~G~AvDi~~~~~dGk~v~W~~~~~~~~~v~~~~~~~G 130 (179)
T 1xp2_A 51 EGIYLCVAQGYRSTAEQNALYAQGRTKPGAIVTNAKGGQSNHNYGVAVDLCLYTNDGKDVIWESTTSRWKKVVAAMKAEG 130 (179)
T ss_dssp TTCCEEEEECCCCHHHHHHHHHBTTTBSSCCCCSCCTTSSGGGGTCEEEEEEECTTSSSEECCSSSHHHHHHHHHHHHTT
T ss_pred cCCeEEEEEeecCHHHHHHHHHhhcccCCceeeeCCCCCCCccceeEEEEeeeccCCcccccCcccHhHHHHHHHHHHhC
Confidence 378899999999954 233 4799999999999753 11 1 234667889999999
Q ss_pred CCeE-EEc-CCCeEEEeec
Q psy16498 57 FDWV-YYE-SRNHIHCSVK 73 (102)
Q Consensus 57 Fd~v-~Y~-~~~fVHvdv~ 73 (102)
|.|= -.. ..++-|..+.
T Consensus 131 ~~WGG~W~~~~D~~HFel~ 149 (179)
T 1xp2_A 131 FKWGGDWKSFKDYPHFELC 149 (179)
T ss_dssp CEEGGGSSSSCCTTEEESS
T ss_pred ceeccccCCCCCCCCEEec
Confidence 8665 222 2477898886
No 6
>2vo9_A EAD500, L-alanyl-D-glutamate peptidase; cell WALL biogenesis/degradation, secreted, cell WALL, hydro; 1.8A {Bacteriophage A500} SCOP: d.65.1.5
Probab=97.56 E-value=0.00014 Score=52.98 Aligned_cols=68 Identities=24% Similarity=0.391 Sum_probs=47.7
Q ss_pred CCeEEEeeeeCCCCC-----------------CC--CCCcCcceeEEEEEeCCC---------CcchHHHHHHHHHHcCC
Q psy16498 6 GVRLRVIEGWDEEGH-----------------HA--SDSLHYEGRAVDITTSDR---------DSSKYGLLARMAVEAGF 57 (102)
Q Consensus 6 G~Pi~VtSGYR~p~~-----------------N~--~~S~H~~GrAaDI~~~~~---------~~~~~~~L~~~A~~~gF 57 (102)
|.+|.|+||||+.+. |+ ..|.|..|.|+||..... ......++.++++++||
T Consensus 52 Gi~l~i~sgyRs~~~Q~~Ly~~~~~~~g~~~~~a~pg~S~H~~G~AvD~~~~~~dg~~~~~~~~~~~~~~~~~~a~~~G~ 131 (179)
T 2vo9_A 52 GIYLCVAQGYRSTAEQNALYAQGRTKPGAIVTNAKGGQSNHNYGVAVDLCLYTNDGKDVIWESTTSRWKKVVAAMKAEGF 131 (179)
T ss_dssp TCCEEEEECCCCHHHHHHHHHBTTTBSSCCCCSCCTTSSGGGGTCEEEEEEECTTSSSEECCSSSHHHHHHHHHHHHTTC
T ss_pred CCeEEEEEEECCHHHHHHHHHHhcccCCCceecCCCCCCCCCCcccccccceecCCcccccCcchHHHHHHHHHHHHcCC
Confidence 889999999999442 22 479999999999975321 12334567788889998
Q ss_pred CeE-EE-cCCCeEEEeec
Q psy16498 58 DWV-YY-ESRNHIHCSVK 73 (102)
Q Consensus 58 d~v-~Y-~~~~fVHvdv~ 73 (102)
.|= -. ..+++-|..+.
T Consensus 132 ~WGG~W~~f~D~pHFEL~ 149 (179)
T 2vo9_A 132 KWGGDWKSFKDYPHFELC 149 (179)
T ss_dssp EEGGGSSSSCCTTEEESS
T ss_pred eecCcCCCCCCCceEeec
Confidence 542 11 12578899875
No 7
>4f78_A D,D-dipeptidase/D,D-carboxypeptidase; center for structural genomics of infectious diseases; HET: MSE; 1.95A {Enterococcus faecalis}
Probab=95.16 E-value=0.0062 Score=46.88 Aligned_cols=33 Identities=24% Similarity=0.388 Sum_probs=26.8
Q ss_pred CCeEEEeeeeCCCCCC--------------------C--CCCcCcceeEEEEEeC
Q psy16498 6 GVRLRVIEGWDEEGHH--------------------A--SDSLHYEGRAVDITTS 38 (102)
Q Consensus 6 G~Pi~VtSGYR~p~~N--------------------~--~~S~H~~GrAaDI~~~ 38 (102)
|..|.|+||||+.+.. + -.|.|-.|.|+||...
T Consensus 65 g~~L~i~SgYRS~~~Q~~L~~~~~~~~G~~~a~~~~A~PG~SeH~tGlAvDi~~~ 119 (255)
T 4f78_A 65 GNSIVPVSGYRSLEEQTAIYDGSLKDNGEDFTRKYVALPNHSEHQTGLAIDLGLN 119 (255)
T ss_dssp TTSEEEEECCCCHHHHHHHHHHHHHHHCHHHHHHHSCCTTSCGGGGTCEEEEEES
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHHhcchhhhhheecCCCCCCccceEEEEeccC
Confidence 5689999999995522 1 5699999999999864
No 8
>1r44_A D-alanyl-D-alanine dipeptidase; VANX, E.faecium, hydrolase; 2.25A {Enterococcus faecium} SCOP: d.65.1.4
Probab=79.64 E-value=1.2 Score=32.83 Aligned_cols=33 Identities=33% Similarity=0.473 Sum_probs=26.4
Q ss_pred CCeEEEeeeeCCCC-CC---------------------------------CCCCcCcceeEEEEEeC
Q psy16498 6 GVRLRVIEGWDEEG-HH---------------------------------ASDSLHYEGRAVDITTS 38 (102)
Q Consensus 6 G~Pi~VtSGYR~p~-~N---------------------------------~~~S~H~~GrAaDI~~~ 38 (102)
|-.|.|-+|||+.+ .. ++.|-|..|.|+|+++-
T Consensus 61 G~~L~I~DaYRP~~avq~f~~w~~~~~~~~~~~~~~p~~~~~~l~~~~yVA~~s~Hs~G~AVDLTL~ 127 (202)
T 1r44_A 61 GYGLLLWDGYRPKRAVNCFMQWAAQPENNLTKESYYPNIDRTEMISKGYVASKSSHSRGSAIDLTLY 127 (202)
T ss_dssp SEEEEEEECCCCHHHHHHHHHHHTSCCCCSSHHHHCSSSCTTHHHHTSSSCSSCGGGGTCEEEEEEE
T ss_pred CCeEEEEEccCCHHHHHHHHHHHhcchhhhhhhhcCCccCHHHHhhcceecCCCCCCCcEEEEeEEe
Confidence 78899999999962 11 14678999999999984
No 9
>2fsu_A Protein PHNH; C-P lyase, phosphonate metabolism, structural genomics montreal-kingston bacterial structural genomics initiative; HET: MSE; 1.70A {Escherichia coli} SCOP: c.67.2.1
Probab=52.49 E-value=5.9 Score=29.54 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=14.0
Q ss_pred hhhhcC-CCcCCcceeeec
Q psy16498 84 ALWALG-RGFPPGVDFILN 101 (102)
Q Consensus 84 ~~~~~~-~~~~~~~~~~~~ 101 (102)
+.|..| ..||-|+|+||-
T Consensus 175 ~~~~~n~~~FPlGvDlil~ 193 (210)
T 2fsu_A 175 HELTERPHPFPLGIDLILT 193 (210)
T ss_dssp HHHHHCCSTTTTSCEEEEE
T ss_pred HHHHHccccCCCceEEEEE
Confidence 456677 559999999973
No 10
>4gbu_A NADPH dehydrogenase 1; alpha/beta barrel, enenone reductase, alkene reductase, NADP oxidoreductase, carvone, enenatioselectivity; HET: 0WV 1PE FMN; 1.18A {Saccharomyces pastorianus} PDB: 4ge8_A* 1oya_A* 1oyb_A* 1oyc_A* 3tx9_A* 3rnd_A* 1k02_A* 1k03_A* 1bwk_A* 1bwl_A*
Probab=31.06 E-value=31 Score=26.99 Aligned_cols=23 Identities=26% Similarity=0.241 Sum_probs=15.7
Q ss_pred HHHHHHHHHHcCCCeE-EEcCCCe
Q psy16498 45 YGLLARMAVEAGFDWV-YYESRNH 67 (102)
Q Consensus 45 ~~~L~~~A~~~gFd~v-~Y~~~~f 67 (102)
+.+-++.|+++|||+| +--.-||
T Consensus 174 F~~AA~rA~~AGFDgVEIH~AhGY 197 (400)
T 4gbu_A 174 YVQAAKNSIAAGADGVEIHSANGY 197 (400)
T ss_dssp HHHHHHHHHHTTCSEEEEECCTTS
T ss_pred HHHHHHHHHhcCcCeeeecccccc
Confidence 5556666789999999 6433333
No 11
>4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis}
Probab=28.31 E-value=36 Score=26.24 Aligned_cols=16 Identities=56% Similarity=0.729 Sum_probs=12.6
Q ss_pred HHHHHHHHHHcCCCeE
Q psy16498 45 YGLLARMAVEAGFDWV 60 (102)
Q Consensus 45 ~~~L~~~A~~~gFd~v 60 (102)
+.+-++.|+++|||+|
T Consensus 154 F~~AA~rA~~AGFDgV 169 (358)
T 4a3u_A 154 YEKAARHALKAGFDGV 169 (358)
T ss_dssp HHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHcCCCeE
Confidence 4555666789999999
No 12
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=24.46 E-value=47 Score=23.51 Aligned_cols=37 Identities=14% Similarity=0.181 Sum_probs=26.5
Q ss_pred CCCCcchHHHHHHHHHHcCCCeE-EEcCCCeEEEeecC
Q psy16498 38 SDRDSSKYGLLARMAVEAGFDWV-YYESRNHIHCSVKT 74 (102)
Q Consensus 38 ~~~~~~~~~~L~~~A~~~gFd~v-~Y~~~~fVHvdv~~ 74 (102)
.+.......+|.+++..+||..| -|-++|=|=++...
T Consensus 17 GG~nkv~MadLr~~l~~lGf~~V~TyI~SGNvvF~s~~ 54 (183)
T 2hiy_A 17 GGKNKVVMAELRQELTNLGLEKVESYINSGNIFFTSID 54 (183)
T ss_dssp C-CCCCCHHHHHHHHHHHTCEEEEEETTTTEEEEEECS
T ss_pred CCCCcccHHHHHHHHHHcCCccceEEEecCCEEEecCC
Confidence 33344446788888999999999 88777766666543
No 13
>3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus}
Probab=21.49 E-value=60 Score=25.81 Aligned_cols=16 Identities=44% Similarity=0.524 Sum_probs=12.4
Q ss_pred HHHHHHHHHHcCCCeE
Q psy16498 45 YGLLARMAVEAGFDWV 60 (102)
Q Consensus 45 ~~~L~~~A~~~gFd~v 60 (102)
+.+-++.|+++|||+|
T Consensus 172 F~~AA~rA~~AGfDgV 187 (419)
T 3l5a_A 172 YRDATLRAIKAGFDGV 187 (419)
T ss_dssp HHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHcCCCEE
Confidence 4555666779999999
Done!