RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16498
(102 letters)
>3n1g_B Desert hedgehog protein; binding sites, calcium, cell adhesion
molecules, cell cycle cell LINE, conserved sequence,
fibronectins; 1.90A {Homo sapiens} PDB: 3n1q_B
Length = 170
Score = 141 bits (355), Expect = 2e-44
Identities = 63/74 (85%), Positives = 68/74 (91%)
Query: 1 MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
MN WPGVRLRV EGWDE+GHHA DSLHYEGRA+DITTSDRD +KYGLLAR+AVEAGFDWV
Sbjct: 96 MNMWPGVRLRVTEGWDEDGHHAQDSLHYEGRALDITTSDRDRNKYGLLARLAVEAGFDWV 155
Query: 61 YYESRNHIHCSVKT 74
YYESRNH+H SVK
Sbjct: 156 YYESRNHVHVSVKA 169
>2ibg_E Protein hedgehog, GH03927P; IHOG, fibronectin type III, protein
binding; 2.20A {Drosophila melanogaster} SCOP: d.65.1.2
Length = 150
Score = 137 bits (345), Expect = 3e-43
Identities = 55/74 (74%), Positives = 62/74 (83%)
Query: 1 MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
MNEWPG+RL V E WDE+ HH +SLHYEGRAV I TSDRD SKYG+LAR+AVEAGFDWV
Sbjct: 76 MNEWPGIRLLVTESWDEDYHHGQESLHYEGRAVTIATSDRDQSKYGMLARLAVEAGFDWV 135
Query: 61 YYESRNHIHCSVKT 74
Y SR HI+CSVK+
Sbjct: 136 SYVSRRHIYCSVKS 149
>3k7i_B IHH, HHG-2, indian hedgehog protein; alpha+beta sandwich,
autocatalytic cleavage, cell membrane, developmental
protein, disease mutation; 1.44A {Homo sapiens} PDB:
3k7g_B 3k7j_B 3k7h_B 3n1f_A 3n1m_B 3n1o_A 3n1p_B 3m1n_A
3mxw_A 3ho5_H 1vhh_A 3d1m_A 3n1r_A 2wg4_A 2wfx_A 2wfq_A
2wfr_A 2wg3_A*
Length = 187
Score = 134 bits (338), Expect = 1e-41
Identities = 59/74 (79%), Positives = 70/74 (94%)
Query: 1 MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
MN+WPGV+LRV +GWDE+GHH+ +SLHYEGRAVDITTSDRD +KYGLLAR+AVEAGFDWV
Sbjct: 104 MNQWPGVKLRVTKGWDEDGHHSEESLHYEGRAVDITTSDRDRNKYGLLARLAVEAGFDWV 163
Query: 61 YYESRNHIHCSVKT 74
YYES+ H+HCSVK+
Sbjct: 164 YYESKAHVHCSVKS 177
>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN;
1.03A {Pseudomonas putida} PDB: 3l5m_A* 3n19_B* 3n16_A*
3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A*
2h8x_A*
Length = 363
Score = 27.9 bits (63), Expect = 0.60
Identities = 7/12 (58%), Positives = 10/12 (83%)
Query: 49 ARMAVEAGFDWV 60
AR A +AGF+W+
Sbjct: 164 ARRARDAGFEWI 175
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of
dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN;
1.60A {Thermoanaerobacter pseudethanolicus AT} PDB:
3krz_A*
Length = 343
Score = 27.5 bits (62), Expect = 0.70
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 49 ARMAVEAGFDWV 60
A+ A AG+D V
Sbjct: 149 AKRANLAGYDVV 160
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A
{Thermus scotoductus} PDB: 3hf3_A*
Length = 349
Score = 27.5 bits (62), Expect = 0.74
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 49 ARMAVEAGFDWV 60
AR A+ AGF +
Sbjct: 158 ARRALRAGFQVI 169
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN,
beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis}
SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Length = 338
Score = 27.5 bits (62), Expect = 0.81
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 49 ARMAVEAGFDWV 60
A A EAGFD +
Sbjct: 150 AARAKEAGFDVI 161
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel,
oxidoreductase, flavoprotein; HET: FMN; 2.30A
{Geobacillus kaustophilus} PDB: 3gr8_A*
Length = 340
Score = 27.5 bits (62), Expect = 0.81
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 49 ARMAVEAGFDWV 60
AR A EAGFD +
Sbjct: 150 ARRAKEAGFDVI 161
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural
genomics, epimerase, PSI, structure initiative; 1.60A
{Streptococcus pyogenes} SCOP: c.1.2.5
Length = 234
Score = 27.2 bits (60), Expect = 0.88
Identities = 3/52 (5%), Positives = 10/52 (19%), Gaps = 7/52 (13%)
Query: 28 YEGRAVDITTSDRDSSKYGLLARMAVEAGFDWVYYESRNHIHCSVKTVLDMV 79
Y + IT + + + + + +
Sbjct: 80 YPPQEPFITATMTE-------VDQLAALNIAVIAMDCTKRDRHDGLDIASFI 124
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP;
1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB:
1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D*
1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D*
2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Length = 482
Score = 26.8 bits (60), Expect = 1.1
Identities = 8/11 (72%), Positives = 8/11 (72%)
Query: 1 MNEWPGVRLRV 11
MNE PG R RV
Sbjct: 226 MNEPPGARARV 236
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability,
potential tentoxin binding hydrolase; 3.20A {Spinacia
oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Length = 498
Score = 26.5 bits (59), Expect = 1.5
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 1 MNEWPGVRLRV 11
MNE PG R+RV
Sbjct: 239 MNEPPGARMRV 249
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC
F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1
b.49.1.1 c.37.1.11
Length = 473
Score = 26.2 bits (58), Expect = 2.0
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 1 MNEWPGVRLRV 11
MNE PG R+RV
Sbjct: 218 MNEPPGARMRV 228
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 26.2 bits (58), Expect = 2.3
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 6/28 (21%)
Query: 44 KYGLLARMAVEAGFDWVYYESRNHIHCS 71
Y A+ + +AGFD VY ++ +
Sbjct: 150 FYVDAAKRSRDAGFDIVY------VYGA 171
>1zlp_A PSR132, petal death protein; TIM-barrel, helix
swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate
lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus
caryophyllus}
Length = 318
Score = 25.8 bits (57), Expect = 2.5
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 46 GLLARMAVEAGFDWVY 61
L A + + GF +
Sbjct: 49 ALSAAVVEKTGFHAAF 64
>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate
lyase/inhibitor complex, isocitrate lyase superfamily;
HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A
1oqf_A 1ujq_A 1o5q_A
Length = 295
Score = 25.7 bits (57), Expect = 2.9
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 46 GLLARMAVEAGFDWVY 61
A +A AG+ +Y
Sbjct: 27 ANHALLAQRAGYQAIY 42
>3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family,
OYE-like FMN-binding domain, TIM B oxidoreductase; HET:
PGE; 1.65A {Staphylococcus aureus}
Length = 419
Score = 25.7 bits (57), Expect = 2.9
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 44 KYGLLARMAVEAGFDWV 60
+Y A++AGFD V
Sbjct: 171 QYRDATLRAIKAGFDGV 187
>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping;
2.18A {Aspergillus niger} PDB: 3fa3_A
Length = 302
Score = 25.7 bits (57), Expect = 2.9
Identities = 10/16 (62%), Positives = 13/16 (81%)
Query: 46 GLLARMAVEAGFDWVY 61
GL AR+A+ AGFD +Y
Sbjct: 28 GLSARVALSAGFDALY 43
>3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix
swapping, lyase; 1.90A {Pseudomonas aeruginosa}
Length = 287
Score = 25.7 bits (57), Expect = 3.1
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 46 GLLARMAVEAGFDWVY 61
+ AR+A + GF+
Sbjct: 31 PMSARIAADLGFECGI 46
>3eoo_A Methylisocitrate lyase; seattle structural genomics center for
infectious disease, ssgcid; 2.90A {Burkholderia
pseudomallei 1655}
Length = 298
Score = 25.7 bits (57), Expect = 3.2
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 46 GLLARMAVEAGFDWVY 61
A+MA GF VY
Sbjct: 32 AYAAKMAEAVGFKAVY 47
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 25.7 bits (57), Expect = 3.2
Identities = 7/28 (25%), Positives = 14/28 (50%), Gaps = 6/28 (21%)
Query: 44 KYGLLARMAVEAGFDWVYYESRNHIHCS 71
+ R ++EAG+D VY ++ +
Sbjct: 157 WHRNAVRRSIEAGYDIVY------VYGA 178
>3ih1_A Methylisocitrate lyase; alpha-beta structure, TIM-barrel, center
for structural GENO infectious diseases, csgid; 2.00A
{Bacillus anthracis str} PDB: 3kz2_A
Length = 305
Score = 25.4 bits (56), Expect = 3.4
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 46 GLLARMAVEAGFDWVY 61
+ A +A GF +Y
Sbjct: 39 AMAALVARNTGFLALY 54
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 25.4 bits (55), Expect = 3.6
Identities = 7/25 (28%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 45 YGL-LARMAVEAGFDWVYYESRNHI 68
+G A + + E RNHI
Sbjct: 12 FGAVCANELKKLNKKVLVIEKRNHI 36
>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A
{Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A
Length = 307
Score = 25.4 bits (56), Expect = 4.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 46 GLLARMAVEAGFDWVY 61
GL AR A+E GF +Y
Sbjct: 35 GLSARTAMELGFKSLY 50
>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel,
protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE;
1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A*
1ics_A* 3hgr_A* 1vji_A* 2q3r_A*
Length = 376
Score = 25.2 bits (56), Expect = 4.1
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 49 ARMAVEAGFDWV 60
AR A+EAGFD V
Sbjct: 173 ARNAIEAGFDGV 184
>2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein,
jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A
{Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A*
3hgo_A* 1q45_A* 2g5w_A* 2q3o_A*
Length = 402
Score = 25.3 bits (56), Expect = 4.3
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 45 YGLLARMAVEAGFDWV 60
Y A A+EAGFD +
Sbjct: 173 YRRSALNAIEAGFDGI 188
>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride
transfer, oxidoreductase; HET: FMN TXD; 1.40A
{Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*
Length = 377
Score = 25.2 bits (56), Expect = 4.5
Identities = 7/12 (58%), Positives = 8/12 (66%)
Query: 49 ARMAVEAGFDWV 60
A+ A AGFD V
Sbjct: 172 AQRAKRAGFDMV 183
>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid,
targetdb bupsa00093A, structural genomics; HET: FMN;
2.30A {Burkholderia pseudomallei}
Length = 361
Score = 25.1 bits (56), Expect = 4.6
Identities = 7/12 (58%), Positives = 7/12 (58%)
Query: 49 ARMAVEAGFDWV 60
A A AGFD V
Sbjct: 167 AENARAAGFDGV 178
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural
genomics, seattle structural genomics center for
infectious disease, ssgcid; HET: B3P; 2.25A
{Mycobacterium marinum} PDB: 3tcr_A
Length = 185
Score = 24.9 bits (55), Expect = 4.7
Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 9/68 (13%)
Query: 5 PGVRLRVIEGWDEEGH----HASDSLHYEGRAVDITTSDRDSSKY----G-LLARMAVEA 55
PG + + G+ + GRA+ + DR + G L+ + EA
Sbjct: 2 PGSMVNADAQLSDLGYSVAPMEQGAELVVGRALVVVVDDRTAHGDEDHSGPLVTELLTEA 61
Query: 56 GFDWVYYE 63
GF
Sbjct: 62 GFVVDGVV 69
>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase,
flavoenzyme, explosive degradation, steroid binding;
HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1
PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A*
1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A*
3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A*
...
Length = 364
Score = 25.2 bits (56), Expect = 4.7
Identities = 7/12 (58%), Positives = 7/12 (58%)
Query: 49 ARMAVEAGFDWV 60
A EAGFD V
Sbjct: 167 VANAREAGFDLV 178
>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET:
BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A*
2gq9_A* 2gqa_A*
Length = 365
Score = 25.1 bits (56), Expect = 4.8
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 49 ARMAVEAGFDWV 60
A A+EAGFD +
Sbjct: 167 ALNAMEAGFDGI 178
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 25.1 bits (55), Expect = 4.9
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 48 LARMAVEAGFDWVYYESRNHIHCSVKTVLDMVGIASAL 85
L + + F+ Y+ + + +L V IA L
Sbjct: 190 LVFLLTDCRFEIDYFRVKELETRTGNKILGFVIIAQKL 227
>3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM
barrel, NADPH oxidoreductase, enone reductase; HET: FMN;
1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A*
4df2_A*
Length = 407
Score = 25.2 bits (56), Expect = 4.9
Identities = 6/12 (50%), Positives = 11/12 (91%)
Query: 49 ARMAVEAGFDWV 60
A+ A++AGFD++
Sbjct: 174 AQKAMDAGFDYI 185
>3rnd_A NADPH dehydrogenase 1; TIM barrel, oxidoreductase; HET: FMN 3RN;
1.40A {Saccharomyces pastorianus} PDB: 1oya_A* 1oyb_A*
1oyc_A* 3tx9_A* 1k02_A* 1k03_A* 1bwk_A* 1bwl_A*
Length = 399
Score = 25.2 bits (56), Expect = 4.9
Identities = 5/12 (41%), Positives = 8/12 (66%)
Query: 49 ARMAVEAGFDWV 60
A+ ++ AG D V
Sbjct: 177 AKNSIAAGADGV 188
>3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase,
cinnamoyl/Fe esterase, hydroxycinammates,
extracellular; HET: ZYC; 1.58A {Lactobacillus
johnsonii} PDB: 3pf9_A* 3pfc_A* 3s2z_A* 3pf8_A 3qm1_A*
Length = 270
Score = 24.8 bits (54), Expect = 5.5
Identities = 6/31 (19%), Positives = 14/31 (45%)
Query: 37 TSDRDSSKYGLLARMAVEAGFDWVYYESRNH 67
T++R++S +A + V ++ H
Sbjct: 56 TANRNTSLLREIANSLRDENIASVRFDFNGH 86
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein
structure initiati midwest center for structural
genomics, MCSG; 2.00A {Desulfitobacterium hafniense}
Length = 261
Score = 24.9 bits (55), Expect = 5.6
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 48 LARMAVEAGFDWVYY--ESRNHIHCSVKTVLDMVGIASA 84
+ R+ EAG D+ E H + + + +V +A
Sbjct: 29 IVRIYAEAGLDYFIVDCE---HAAYTFREINHLVSVAKN 64
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.0 bits (54), Expect = 6.0
Identities = 16/82 (19%), Positives = 26/82 (31%), Gaps = 26/82 (31%)
Query: 15 WDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLAR------MAVEAG----FDWV---- 60
++ + EG A D D ++ L+ + VE FD V
Sbjct: 34 QEQ--FNKILPEPTEGFAAD----DEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLC 87
Query: 61 --YYESR----NHIHCSVKTVL 76
+E+ N IH +L
Sbjct: 88 LTEFENCYLEGNDIHALAAKLL 109
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12
protein YFAU, 2-keto-3-deoxy SU aldolase, degradation
of homoprotocatechuate; 1.39A {Escherichia coli} PDB:
2vwt_A
Length = 267
Score = 24.5 bits (54), Expect = 6.8
Identities = 7/39 (17%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 48 LARMAVEAGFDWVYY--ESRNHIHCSVKTVLDMVGIASA 84
+A +A +G+DW+ E H +++ + + +
Sbjct: 31 MAEIAATSGYDWLLIDGE---HAPNTIQDLYHQLQAVAP 66
>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A
{Arabidopsis thaliana}
Length = 180
Score = 24.4 bits (53), Expect = 6.8
Identities = 2/12 (16%), Positives = 4/12 (33%)
Query: 6 GVRLRVIEGWDE 17
G + + G
Sbjct: 100 GKEKKELAGLAI 111
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 24.6 bits (54), Expect = 7.1
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 6/28 (21%)
Query: 44 KYGLLARMAVEAGFDWVYYESRNHIHCS 71
+ A++A EAG+D V + S
Sbjct: 142 NFARCAQLAREAGYDGVE------VMGS 163
>2b3y_A Iron-responsive element binding protein 1; IRP1 IRE-IRP1 aconitase
activity, lyase; 1.85A {Homo sapiens} SCOP: c.8.2.1
c.83.1.1 PDB: 2b3x_A 3snp_A 3sn2_A 2ipy_A
Length = 888
Score = 24.4 bits (54), Expect = 7.7
Identities = 8/18 (44%), Positives = 13/18 (72%), Gaps = 3/18 (16%)
Query: 46 GLLARMAVEAGFD---WV 60
GLLA+ AV+AG + ++
Sbjct: 449 GLLAKKAVDAGLNVMPYI 466
>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate
biosynthesis pathway, isomera; 1.69A {Mytilus edulis}
SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A
Length = 295
Score = 24.1 bits (53), Expect = 9.6
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 46 GLLARMAVEAGFDWVY 61
GL AR+ EAGF ++
Sbjct: 29 GLSARIVQEAGFKGIW 44
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.448
Gapped
Lambda K H
0.267 0.0736 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,773,285
Number of extensions: 93770
Number of successful extensions: 331
Number of sequences better than 10.0: 1
Number of HSP's gapped: 331
Number of HSP's successfully gapped: 71
Length of query: 102
Length of database: 6,701,793
Length adjustment: 67
Effective length of query: 35
Effective length of database: 4,831,086
Effective search space: 169088010
Effective search space used: 169088010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.4 bits)