RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy16498
         (102 letters)



>d3d1ma1 d.65.1.2 (A:41-188) Sonic hedgehog {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 148

 Score =  156 bits (397), Expect = 2e-51
 Identities = 61/74 (82%), Positives = 69/74 (93%)

Query: 1   MNEWPGVRLRVIEGWDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV 60
           MN+WPGV+LRV EGWDE+GHH+ +SLHYEGRAVDITTSDRD SKYG+LAR+AVEAGFDWV
Sbjct: 75  MNQWPGVKLRVTEGWDEDGHHSEESLHYEGRAVDITTSDRDRSKYGMLARLAVEAGFDWV 134

Query: 61  YYESRNHIHCSVKT 74
           YYES+ HIHCSVK 
Sbjct: 135 YYESKAHIHCSVKA 148


>d1lbua2 d.65.1.1 (A:84-213) Zn2+ DD-carboxypeptidase C-terminal
           catalytic domain {Streptomyces albus G [TaxId: 1962]}
          Length = 130

 Score = 35.0 bits (80), Expect = 3e-04
 Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 7/65 (10%)

Query: 15  WDEEGHHASDSLHYEGRAVDITTSDRDSSKYGLLARMAVEAGFDWV----YYESRNHIHC 70
            +     AS+S H  G A D+    +       LA+ A   GF  +    Y    +H H 
Sbjct: 59  CNSNVGGASNSRHMYGHAADLGAGSQGFCA---LAQAARNHGFTEILGPGYPGHNDHTHV 115

Query: 71  SVKTV 75
           +    
Sbjct: 116 AGGDG 120


>d2o62a2 b.60.1.9 (A:1-132) Uncharacterized protein All1756 ortholog
           {Nostoc punctiforme [TaxId: 272131]}
          Length = 132

 Score = 24.0 bits (52), Expect = 3.4
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 4   WPGVRLRVIEGWDEEGHHASDSLHYEGRA 32
               RLR+++ +D  GH    +L  E  A
Sbjct: 99  HENRRLRLVQLFDRNGHLNGLTLIREHLA 127


>d2p10a1 c.1.12.9 (A:8-204) Uncharacterized protein Mll9387
          {Mesorhizobium loti [TaxId: 381]}
          Length = 197

 Score = 24.1 bits (52), Expect = 3.8
 Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 6/44 (13%)

Query: 46 GLLARMAVEAGFDWVYYESRNHIHCSVKTVLDMVGIASALWALG 89
          GL A+       D +       I+ S +  +   G  + L A G
Sbjct: 30 GLSAKSEEAGDIDLIV------IYNSGRYRMAGRGSLAGLLAYG 67


>d2vo9a1 d.65.1.5 (A:1-148) L-alanyl-D-glutamate peptidase Ply
           {Listeria phage A500 [TaxId: 40522]}
          Length = 148

 Score = 23.5 bits (50), Expect = 4.8
 Identities = 11/56 (19%), Positives = 14/56 (25%), Gaps = 9/56 (16%)

Query: 13  EGWDEEGHHASDSLHYEGRAVDITTSDRDSSK---------YGLLARMAVEAGFDW 59
            G          S H  G AVD+     D            +  +       GF W
Sbjct: 66  PGAIVTNAKGGQSNHNYGVAVDLCLYTNDGKDVIWESTTSRWKKVVAAMKAEGFKW 121


>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase,
          N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}
          Length = 314

 Score = 23.6 bits (50), Expect = 5.8
 Identities = 7/25 (28%), Positives = 10/25 (40%), Gaps = 1/25 (4%)

Query: 45 YGL-LARMAVEAGFDWVYYESRNHI 68
           G  + R   E G      + R+HI
Sbjct: 13 SGAVIGRQLAEKGHQVHIIDQRDHI 37


>d1igwa_ c.1.12.7 (A:) Isocitrate lyase {Escherichia coli [TaxId:
          562]}
          Length = 416

 Score = 23.4 bits (50), Expect = 7.5
 Identities = 7/31 (22%), Positives = 9/31 (29%), Gaps = 8/31 (25%)

Query: 39 DRDSSKY--------GLLARMAVEAGFDWVY 61
                Y        G  A    +AG + VY
Sbjct: 58 GESKKGYINSLGALTGGQALQQAKAGIEAVY 88


>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase,
          N-terminal domain {Escherichia coli [TaxId: 562]}
          Length = 298

 Score = 22.8 bits (48), Expect = 9.8
 Identities = 6/21 (28%), Positives = 8/21 (38%)

Query: 48 LARMAVEAGFDWVYYESRNHI 68
           A    +     +  E RNHI
Sbjct: 16 CANELKKLNKKVLVIEKRNHI 36


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.138    0.448 

Gapped
Lambda     K      H
   0.267   0.0656    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 421,815
Number of extensions: 15795
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 18
Length of query: 102
Length of database: 2,407,596
Length adjustment: 63
Effective length of query: 39
Effective length of database: 1,542,606
Effective search space: 60161634
Effective search space used: 60161634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.0 bits)