RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16499
(258 letters)
>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn
finger domain [Posttranslational modification, protein
turnover, chaperones].
Length = 371
Score = 60.7 bits (148), Expect = 9e-11
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 10/69 (14%)
Query: 13 KTKDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDR-VTEED-----KEV--ATE--NDVE 62
+D YE+L V K A+ E+I+KA+ KL+ HPDR +++ KE+ A E +D E
Sbjct: 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPE 61
Query: 63 KRKVYDQTG 71
KR YDQ G
Sbjct: 62 KRAAYDQFG 70
>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ. This model
represents bacterial forms of DnaJ, part of the
DnaK-DnaJ-GrpE chaperone system. The three components
typically are encoded by consecutive genes. DnaJ
homologs occur in many genomes, typically not near DnaK
and GrpE-like genes; most such genes are not included
by this family. Eukaryotic (mitochondrial and
chloroplast) forms are not included in the scope of
this family.
Length = 354
Score = 60.7 bits (148), Expect = 1e-10
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 9/65 (13%)
Query: 16 DLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEED-----KEVATENDV----EKRKV 66
D YE+L V K A+ E+I+KA+ KL+ HPDR +++ KE+ +V EKR
Sbjct: 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQ 60
Query: 67 YDQTG 71
YDQ G
Sbjct: 61 YDQFG 65
>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain. DnaJ domains (J-domains) are
associated with hsp70 heat-shock system and it is
thought that this domain mediates the interaction.
DnaJ-domain is therefore part of a chaperone (protein
folding) system. The T-antigens, although not in
Prosite are confirmed as DnaJ containing domains from
literature.
Length = 63
Score = 54.5 bits (132), Expect = 3e-10
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 10/63 (15%)
Query: 16 DLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEED------KEVA----TENDVEKRK 65
D YE+L V + A+ E+I+KA+ KL+L HPD+ + KE+ +D EKR
Sbjct: 1 DYYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKEINEAYEVLSDPEKRA 60
Query: 66 VYD 68
+YD
Sbjct: 61 IYD 63
>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock
protein 40) proteins are highly conserved and play
crucial roles in protein translation, folding,
unfolding, translocation, and degradation. They act
primarily by stimulating the ATPase activity of Hsp70s,
an important chaperonine family. Hsp40 proteins are
characterized by the presence of a J domain, which
mediates the interaction with Hsp70. They may contain
other domains as well, and the architectures provide a
means of classification.
Length = 55
Score = 52.2 bits (126), Expect = 2e-09
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 16 DLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEVATE 58
D Y++L V A+ E+I+KA+ KL+L HPD+ D A E
Sbjct: 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNP--DDPEAEE 41
>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain.
Length = 60
Score = 49.5 bits (119), Expect = 2e-08
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEVATENDVEKRKVYDQTGTLE 74
D YE+L V + A+ ++I+KA+ KL+L HPD+ DKE A E E + Y+ L
Sbjct: 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNP-GDKEEAEEKFKEINEAYE---VLS 56
Query: 75 DED 77
D +
Sbjct: 57 DPE 59
>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional.
Length = 371
Score = 54.0 bits (131), Expect = 2e-08
Identities = 29/67 (43%), Positives = 41/67 (61%), Gaps = 10/67 (14%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRV-----TEED-KEV--ATE--NDVEKR 64
+D YEVL V + A+ ++I+KA+ KL++ HPDR EE KE+ A E +D +KR
Sbjct: 4 RDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKR 63
Query: 65 KVYDQTG 71
YDQ G
Sbjct: 64 AAYDQYG 70
>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional.
Length = 389
Score = 52.9 bits (127), Expect = 4e-08
Identities = 30/74 (40%), Positives = 41/74 (55%), Gaps = 10/74 (13%)
Query: 10 KYYKTKDLYEVLNVDKTATPEQIRKAFYKLSLVVHPD------RVTEEDKEVATENDV-- 61
K Y KD Y+VL V K AT +I+KA+ KL+ HPD + E KE++ DV
Sbjct: 4 KDYIEKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLS 63
Query: 62 --EKRKVYDQTGTL 73
+KRK YD+ +L
Sbjct: 64 DEKKRKEYDEARSL 77
>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional.
Length = 378
Score = 52.5 bits (126), Expect = 5e-08
Identities = 29/66 (43%), Positives = 39/66 (59%), Gaps = 9/66 (13%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEED-----KEV----ATENDVEKRK 65
+D YEVL VD+ A ++I+KA+ KL+ HPD EE KE+ A +D EKR+
Sbjct: 5 RDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQ 64
Query: 66 VYDQTG 71
YDQ G
Sbjct: 65 RYDQFG 70
>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional.
Length = 365
Score = 52.2 bits (125), Expect = 7e-08
Identities = 28/71 (39%), Positives = 43/71 (60%), Gaps = 11/71 (15%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPD-------RVTEEDKEVATE----NDVEK 63
KD Y++L VD+ A+ E I+KAF +L+ HPD E+ KE++ +D +K
Sbjct: 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQK 62
Query: 64 RKVYDQTGTLE 74
R+ YDQTGT++
Sbjct: 63 RRQYDQTGTVD 73
>gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional.
Length = 392
Score = 52.0 bits (125), Expect = 8e-08
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 10/69 (14%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDR------VTEEDKEVATENDV----EKR 64
KD Y+ L V A+ E+I+KA+ KL+ +HPD E K V+ +DV KR
Sbjct: 9 KDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKR 68
Query: 65 KVYDQTGTL 73
K YD+T L
Sbjct: 69 KEYDETRRL 77
>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional.
Length = 386
Score = 51.4 bits (123), Expect = 1e-07
Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDR------VTEEDKEVATENDV----EKR 64
+D YEVL V KTAT ++I+KA+ K ++ HPD+ E+ KE A DV +KR
Sbjct: 5 RDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKR 64
Query: 65 KVYDQTG 71
YDQ G
Sbjct: 65 SRYDQFG 71
>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional.
Length = 391
Score = 51.4 bits (123), Expect = 1e-07
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 10/66 (15%)
Query: 16 DLYEVLNVDKTATPEQIRKAFYKLSLVVHPDR------VTEEDKEVATE----NDVEKRK 65
D Y +L V KTA+PE+I+KA+ KL++ HPD+ + KEV+ +D +KR+
Sbjct: 2 DYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRE 61
Query: 66 VYDQTG 71
YD+ G
Sbjct: 62 SYDRYG 67
>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional.
Length = 382
Score = 51.3 bits (123), Expect = 1e-07
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 9/66 (13%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPD-----RVTEEDKEVATE----NDVEKRK 65
KD YE+L V + AT E+I+KA+ +L+ HPD E+ KE+ +D EKRK
Sbjct: 3 KDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRK 62
Query: 66 VYDQTG 71
+YDQ G
Sbjct: 63 LYDQFG 68
>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional.
Length = 371
Score = 50.7 bits (121), Expect = 2e-07
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 9/68 (13%)
Query: 16 DLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKE---------VATENDVEKRKV 66
D YE+L V +TA+ ++I+ A+ KL+L HPDR E+ A +D EKR
Sbjct: 3 DYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAH 62
Query: 67 YDQTGTLE 74
YD+ GT
Sbjct: 63 YDRFGTAP 70
>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional.
Length = 376
Score = 50.5 bits (121), Expect = 2e-07
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 9/66 (13%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEED-----KEV--ATE--NDVEKRK 65
+D YEVL V K+A+ ++I+KA+ KLS HPD EE KE+ A E +D +KR
Sbjct: 4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRA 63
Query: 66 VYDQTG 71
YDQ G
Sbjct: 64 QYDQFG 69
>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional.
Length = 377
Score = 50.2 bits (120), Expect = 3e-07
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 9/67 (13%)
Query: 14 TKDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKE---------VATENDVEKR 64
T+D YE+L + K A+ E I+KA+ KL++ HPD+ E D E A +D EKR
Sbjct: 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKR 63
Query: 65 KVYDQTG 71
YD+ G
Sbjct: 64 AQYDRFG 70
>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional.
Length = 380
Score = 49.8 bits (119), Expect = 4e-07
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 10/68 (14%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDR------VTEEDKEVATENDV----EKR 64
KD YEVL ++K A+ ++I+KAF KL++ HPD+ E+ KE+ V +K+
Sbjct: 4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKK 63
Query: 65 KVYDQTGT 72
YDQ GT
Sbjct: 64 AQYDQFGT 71
>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional.
Length = 380
Score = 49.3 bits (118), Expect = 6e-07
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 9/67 (13%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEED-----KEV----ATENDVEKRK 65
+ Y+ L V K A+ ++I+KA+ KLS HPD E KEV T +D +KR
Sbjct: 4 TEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRA 63
Query: 66 VYDQTGT 72
YDQ G
Sbjct: 64 AYDQYGA 70
>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional.
Length = 397
Score = 48.7 bits (116), Expect = 1e-06
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDR------VTEEDKEVATENDV----EKR 64
+D YEVL V ++A ++I+KA+ KL+L HPD+ E KEV +V +KR
Sbjct: 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKR 62
Query: 65 KVYDQTG 71
+ YDQ G
Sbjct: 63 RRYDQFG 69
>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional.
Length = 386
Score = 48.6 bits (116), Expect = 1e-06
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 10/67 (14%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPD------RVTEEDKEV--ATE--NDVEKR 64
KD YE+L VD+ AT E+I+KA+ +L+ HPD ++ KE+ A E +D +KR
Sbjct: 5 KDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKR 64
Query: 65 KVYDQTG 71
YDQ G
Sbjct: 65 AQYDQFG 71
>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional.
Length = 366
Score = 48.2 bits (115), Expect = 1e-06
Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDR------VTEEDKEVATE----NDVEKR 64
+D YE+L V + A+ E+I+K++ KL++ HPDR E KE A +D +KR
Sbjct: 4 RDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKR 63
Query: 65 KVYDQTG 71
+YDQ G
Sbjct: 64 GIYDQYG 70
>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional.
Length = 373
Score = 48.2 bits (115), Expect = 1e-06
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 10/67 (14%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDR------VTEEDKEVATENDV----EKR 64
+D YEVL V + A+ ++I+KA+ KL+L HPDR ++ KE A +V EKR
Sbjct: 4 RDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKR 63
Query: 65 KVYDQTG 71
YD+ G
Sbjct: 64 ARYDRFG 70
>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional.
Length = 421
Score = 47.9 bits (114), Expect = 2e-06
Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 6/64 (9%)
Query: 14 TKDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRV--TEEDKEV--ATE--NDVEKRKVY 67
+ LYEVLN+ K T +I+KA+ KL++ HPD+ E+ KE+ A E +D EKRK+Y
Sbjct: 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKRKIY 86
Query: 68 DQTG 71
D+ G
Sbjct: 87 DEYG 90
>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional.
Length = 372
Score = 47.6 bits (113), Expect = 2e-06
Identities = 30/68 (44%), Positives = 38/68 (55%), Gaps = 9/68 (13%)
Query: 13 KTKDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEED-----KEVATENDV----EK 63
K KD YEVL V KTA+ ++IR+A+ KL+ HPD D E+ DV +K
Sbjct: 2 KKKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDK 61
Query: 64 RKVYDQTG 71
RK YDQ G
Sbjct: 62 RKQYDQFG 69
>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional.
Length = 291
Score = 46.5 bits (110), Expect = 5e-06
Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 9/67 (13%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPD-----RVTEEDKEV----ATENDVEKRK 65
KD Y +L V K A+ ++I+KAF KL+ HPD E+ KE+ +D EKR+
Sbjct: 4 KDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRR 63
Query: 66 VYDQTGT 72
+YD GT
Sbjct: 64 IYDTYGT 70
>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional.
Length = 369
Score = 46.3 bits (110), Expect = 5e-06
Identities = 27/68 (39%), Positives = 38/68 (55%), Gaps = 11/68 (16%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEV---------ATE--NDVEK 63
KD YE+L V + AT E+I++A+ +L HPDR E KE A E +D +K
Sbjct: 4 KDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQK 63
Query: 64 RKVYDQTG 71
R +YD+ G
Sbjct: 64 RAMYDRFG 71
>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional.
Length = 378
Score = 46.2 bits (110), Expect = 7e-06
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 9/66 (13%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPD-----RVTEEDKE--VATE--NDVEKRK 65
+D Y +L V + A+ +I++A+ KL+ +HPD E+ KE VA E +D EKR+
Sbjct: 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRR 62
Query: 66 VYDQTG 71
+ D G
Sbjct: 63 IVDLGG 68
>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional.
Length = 371
Score = 45.4 bits (107), Expect = 1e-05
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 9/66 (13%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEED-----KEVA----TENDVEKRK 65
+D YEVL VD+ A+ ++++KA+ KL+ HPD D KEV T +D +K+
Sbjct: 4 RDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKA 63
Query: 66 VYDQTG 71
YDQ G
Sbjct: 64 HYDQFG 69
>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional.
Length = 372
Score = 43.1 bits (101), Expect = 8e-05
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 10/64 (15%)
Query: 18 YEVLNVDKTATPEQIRKAFYKLSLVVHPD-----RVTEEDKEVATE-----NDVEKRKVY 67
Y++L V K+A E+I+ A+ KL++ HPD + +EE + ATE D +KR+ Y
Sbjct: 7 YDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAY 66
Query: 68 DQTG 71
DQ G
Sbjct: 67 DQFG 70
>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional.
Length = 372
Score = 42.3 bits (99), Expect = 1e-04
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 9/67 (13%)
Query: 14 TKDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEED-----KEVATENDV----EKR 64
++D Y++L V KTA+ ++KA+ KL+ HPD +D KE+ DV +KR
Sbjct: 2 SQDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKR 61
Query: 65 KVYDQTG 71
YD+ G
Sbjct: 62 AAYDRFG 68
>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational
modification, protein turnover, chaperones].
Length = 237
Score = 41.7 bits (97), Expect = 2e-04
Identities = 38/229 (16%), Positives = 72/229 (31%), Gaps = 31/229 (13%)
Query: 12 YKTKDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEVATE-----------ND 60
D YE+L V A+ E+I+KA+ KL+L HPDR + K + +D
Sbjct: 3 SDLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSD 62
Query: 61 VEKRKVYDQ--------------TGTLEDEDDEAIFKSDIDWTMYWKSLYKDVTEEDIIN 106
E+R YD+ + E + +W + + D+++
Sbjct: 63 PERRAEYDKIGADNYFPGKSYRESAAFPIEGSLQLTGLYEEWRGKRNKTERKASLADLLS 122
Query: 107 YETKYKGSAEEINDFKRAY---VQGEGDMDLIFELVPFTHPSEEDRYRQIIQDLIDKEEV 163
+A + + A D+ + + + K +
Sbjct: 123 RGLSGLAAALSLFADEAALRSGSLRRRDLAANLADNFEEALAGVKKAVARLLGKALKSTI 182
Query: 164 PAFDKFLNEAKSKRNRRKFEKEEKLFEKEKAKDERRKKSGVRNSGADSS 212
A E K+ R + + K + K+ ++ G D
Sbjct: 183 KAGAL---EGKALRLKGLLKSARGALGKARLKELSKRHPPFALEGDDKY 228
>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional.
Length = 374
Score = 40.7 bits (96), Expect = 4e-04
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 9/65 (13%)
Query: 16 DLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTE---ED--KEV--ATE--NDVEKRKV 66
D YE+L V + A +++++A+ +L+ HPD E ED KE+ A E +D E R
Sbjct: 4 DYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRAR 63
Query: 67 YDQTG 71
YDQ G
Sbjct: 64 YDQFG 68
>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein
TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ
homolog and probable assembly protein of the Mycoplasma
terminal organelle. The terminal organelle is involved
in both cytadherence and gliding motility [Cellular
processes, Chemotaxis and motility].
Length = 871
Score = 39.4 bits (91), Expect = 0.002
Identities = 32/83 (38%), Positives = 47/83 (56%), Gaps = 12/83 (14%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEED-----KEVATENDV----EKRK 65
+D YEVL +D+ A ++I+KAF KL+ HPDR D E+ NDV +KR
Sbjct: 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRA 61
Query: 66 VYDQTG--TLEDEDDEAIFKSDI 86
YD+ G ++ EDD F++D+
Sbjct: 62 NYDKYGHDGVDREDDFD-FQADV 83
>gnl|CDD|227694 COG5407, SEC63, Preprotein translocase subunit Sec63 [Intracellular
trafficking and secretion].
Length = 610
Score = 38.4 bits (89), Expect = 0.003
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 11 YYKTKDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRV---TEEDKEVATENDVEKRKVY 67
Y + D YE+L +D+ + I+K + LS+ HPD+ E + E K Y
Sbjct: 94 YRRGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAY 153
Query: 68 DQTGTLEDE 76
G L D+
Sbjct: 154 ---GLLTDK 159
>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional.
Length = 306
Score = 36.7 bits (85), Expect = 0.007
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEED-----KEVATE----NDVEKRK 65
KD Y ++ V T + I+ A+ +L+ HPD E D KEVA +D ++R
Sbjct: 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRA 63
Query: 66 VYDQ 69
YDQ
Sbjct: 64 EYDQ 67
>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional.
Length = 365
Score = 36.9 bits (85), Expect = 0.007
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 12/68 (17%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEV------ATE-----NDVEK 63
+D YE+L + K A+ ++I+KA+ K+++ HPD+ + +KE ATE D K
Sbjct: 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDK-NKGNKEAESIFKEATEAYEVLIDDNK 61
Query: 64 RKVYDQTG 71
R YD+ G
Sbjct: 62 RAQYDRFG 69
>gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional.
Length = 369
Score = 35.8 bits (82), Expect = 0.015
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Query: 18 YEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEVATENDVEKRKVYDQT-GTLEDE 76
YE+L V+K + E I+K++ KL+L HPDR DKE EK K+ ++ G L DE
Sbjct: 6 YEILEVEKHSNQETIKKSYRKLALKYHPDR-NAGDKEAE-----EKFKLINEAYGVLSDE 59
Query: 77 DDEAIF 82
A++
Sbjct: 60 KKRALY 65
>gnl|CDD|240265 PTZ00100, PTZ00100, DnaJ chaperone protein; Provisional.
Length = 116
Score = 31.7 bits (72), Expect = 0.11
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 18 YEVLNVDKTATPEQIRKAFYKLSLVVHPD 46
Y++LN+ TA+ E+IR+A +L L HPD
Sbjct: 68 YKILNISPTASKERIREAHKQLMLRNHPD 96
>gnl|CDD|236512 PRK09430, djlA, Dna-J like membrane chaperone protein; Provisional.
Length = 267
Score = 31.3 bits (72), Expect = 0.45
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDR-----VTEEDKEVATENDVEKRKVYDQ 69
+D Y+VL V ++ ++I++A+ KL HPD+ + E E+A E E + Y+
Sbjct: 200 EDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYEL 259
>gnl|CDD|233843 TIGR02390, RNA_pol_rpoA1, DNA-directed RNA polymerase subunit A'.
This family consists of the archaeal A' subunit of the
DNA-directed RNA polymerase. The example from
Methanocaldococcus jannaschii contains an intein.
Length = 867
Score = 30.5 bits (69), Expect = 1.1
Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 12/74 (16%)
Query: 144 PSEEDRYRQIIQDLIDKEEVPA---FDKFLNEAK---------SKRNRRKFEKEEKLFEK 191
E ++Y + I L ++ A +K + EA ++ + KFEK +E+
Sbjct: 106 EEEIEQYLEKINKLKEEGGDLASTLIEKIVKEAAKRMKCPHCGEEQKKIKFEKPTYFYEE 165
Query: 192 EKAKDERRKKSGVR 205
K D + S +R
Sbjct: 166 GKEGDVKLTPSEIR 179
>gnl|CDD|227839 COG5552, COG5552, Uncharacterized conserved protein [Function
unknown].
Length = 88
Score = 28.0 bits (62), Expect = 1.6
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 15 KDLYEVLNVDKTATPEQIRKA----FYKLSLVVHPDRVTEEDKEVATE 58
+++ E+ N D ATP ++R A KLS HP E E A
Sbjct: 3 RNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHPSAANAEAFEAAVA 50
>gnl|CDD|222724 pfam14385, DUF4416, Domain of unknown function (DUF4416). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 176 and 187 amino
acids in length. There is a conserved DPG sequence
motif.
Length = 163
Score = 28.7 bits (65), Expect = 1.7
Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 24/79 (30%)
Query: 130 GDMDLIFELVPFTHPSE------EDRYRQII--QDLIDKEEVPAFDKFLNEAKSKRNRRK 181
G +D +PF + YR+ + + LI EE+ NE
Sbjct: 31 GPIDYESPPLPFDYTDYYEKEMGPGLYRRFVSFERLIHPEELADIKLETNE--------- 81
Query: 182 FEKEEKLFEKEKAKDERRK 200
E A+D +RK
Sbjct: 82 -------IEDAFAEDGKRK 93
>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal. This
domain is found to the N-terminus of bacterial signal
peptidases of the S49 family (pfam01343).
Length = 154
Score = 28.6 bits (65), Expect = 2.0
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 9/55 (16%)
Query: 147 EDRYRQIIQDLIDKEEVPAFDKFLNEAKSKRNRRKFEKEEKLFEKEKAKDERRKK 201
+D + L+DK+E+ A++K +K EK + EK+KAK E K
Sbjct: 52 KDLKESLEAALLDKKELKAWEK---------AEKKAEKAKAKAEKKKAKKEEPKP 97
>gnl|CDD|222912 PHA02624, PHA02624, large T antigen; Provisional.
Length = 647
Score = 29.2 bits (66), Expect = 2.4
Identities = 21/108 (19%), Positives = 43/108 (39%), Gaps = 6/108 (5%)
Query: 15 KDLYEVLNVDKTA--TPEQIRKAFYKLSLVVHPDRVTEEDK--EVATENDVEKRKVYDQT 70
K+L ++L + A +RKA+ + HPD+ +E+K + + + V
Sbjct: 11 KELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEEKMKRLNSLYKKLQEGVKSAR 70
Query: 71 GTLEDEDDEAIFK-SDIDWTMYWKSLYKDVTEEDIINYETKYKGSAEE 117
+ +D I +W +W+ + +ED+ E E+
Sbjct: 71 QSFGTQDSSEIPTYGTPEWEQWWEEFNEK-WDEDLFCDEELSSSDDED 117
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This
family consists of several bovine specific leukaemia
virus receptors which are thought to function as
transmembrane proteins, although their exact function is
unknown.
Length = 561
Score = 28.5 bits (63), Expect = 4.2
Identities = 18/71 (25%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 163 VPAFDKFLNEAKSKRNRRKFEKEEKLFEKEKAKDERRKKSGVRNSGADSSMDLIAAIQSK 222
+P D+++ + +R+R++ EK+++ EK+K + E+R + + G +S D+ A
Sbjct: 75 LPMSDQYVKLEEERRHRQRLEKDKR--EKKKREKEKRGRRRHHSLGTESDEDIAPAQMVD 132
Query: 223 NANRESMFNGL 233
E N L
Sbjct: 133 IVTEEMPENAL 143
>gnl|CDD|130997 TIGR01942, pcnB, poly(A) polymerase. This model describes the pcnB
family of poly(A) polymerases (also known as plasmid
copy number protein). These enzymes sequentially add
adenosine nucleotides to the 3' end of RNAs, targeting
them for degradation by the cell. This was originally
described for anti-sense RNAs, but was later
demonstrated for mRNAs as well. Members of this family
are as yet limited to the gamma- and
beta-proteobacteria, with putative members in the
Chlamydiacae and spirochetes. This family has homology
to tRNA nucleotidyltransferase (cca).
Length = 410
Score = 28.2 bits (63), Expect = 4.6
Identities = 36/131 (27%), Positives = 54/131 (41%), Gaps = 36/131 (27%)
Query: 27 ATPEQIRKAF---------YKLSLVVHPDRVTEEDKEVAT-------ENDVEKRKVYDQT 70
ATPE++RK F ++L V ++ EVAT + E R + D
Sbjct: 57 ATPEEVRKLFRNSRIVGRRFRLVHVSFGRQII----EVATFRSGHKSSVNAEGRILKDNV 112
Query: 71 -GTLEDEDDEAIFKSDIDWTMYWKSLYKDVTEEDIINYETKYKGSAEEINDFKRAYVQGE 129
GTLE ED D+T+ +LY D + E II+Y + D K ++
Sbjct: 113 YGTLE-EDAWR-----RDFTV--NALYYDPSREVIIDY-------VGGMEDLKNRRLRLI 157
Query: 130 GDMDLIFELVP 140
GD ++ P
Sbjct: 158 GDPRSRYQEDP 168
>gnl|CDD|132792 cd06882, PX_p40phox, The phosphoinositide binding Phox Homology
domain of the p40phox subunit of NADPH oxidase. The PX
domain is a phosphoinositide binding module present in
many proteins with diverse functions such as cell
signaling, vesicular trafficking, protein sorting, and
lipid modification, among others. p40phox contains an
N-terminal PX domain, a central SH3 domain that binds
p47phox, and a C-terminal PB1 domain that interacts with
p67phox. It is a cytosolic subunit of the phagocytic
NADPH oxidase complex (also called Nox2 or gp91phox)
which plays a crucial role in the cellular response to
bacterial infection. NADPH oxidase catalyzes the
transfer of electrons from NADPH to oxygen during
phagocytosis forming superoxide and reactive oxygen
species. p40phox positively regulates NADPH oxidase in
both phosphatidylinositol-3-phosphate (PI3P)-dependent
and PI3P-independent manner. The PX domain is a
phospholipid-binding module involved in the membrane
targeting of proteins. The p40phox PX domain binds to
PI3P, an abundant lipid in phagosomal membranes, playing
an important role in the localization of NADPH oxidase.
The PX domain of p40phox is also involved in
protein-protein interaction.
Length = 123
Score = 27.0 bits (60), Expect = 5.1
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 226 RESMFNGLIANLEAKYGGESGK 247
R F L + LE ++G E+G
Sbjct: 40 RYRQFFALQSKLEERFGPEAGS 61
>gnl|CDD|204401 pfam10119, MethyTransf_Reg, Predicted methyltransferase regulatory
domain. Members of this family of domains are found in
various prokaryotic methyltransferases, where they
regulate the activity of the methyltransferase domain.
Length = 86
Score = 26.1 bits (58), Expect = 7.1
Identities = 9/57 (15%), Positives = 17/57 (29%), Gaps = 5/57 (8%)
Query: 115 AEEINDFKRAYVQGEGDMDLIFELVPFTHPSEEDRYRQIIQDLIDKEEVPAFDKFLN 171
A ++ Y+ GD D + + D +E+ D +N
Sbjct: 25 AADLARHGLQYL---GDADPHDSYDELYLEHVAEAALAALPDPRLREQ--YLDFLVN 76
>gnl|CDD|227940 COG5653, COG5653, Protein involved in cellulose biosynthesis (CelD)
[Cell envelope biogenesis, outer membrane].
Length = 406
Score = 27.4 bits (61), Expect = 8.0
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 165 AFDKFLNEAKSKRNRRKFEKEEKLFE 190
+ + L KR R+KF K E+ FE
Sbjct: 185 SAEALLKRICDKRRRKKFRKLERRFE 210
>gnl|CDD|179730 PRK04051, rps4p, 30S ribosomal protein S4P; Validated.
Length = 177
Score = 26.8 bits (60), Expect = 8.6
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 176 KRNRRKFEKEEKLFEKEKAKDERR--KKSGVRN 206
K+ R+K+E ++KE+ +ER K G+RN
Sbjct: 5 KKPRKKYETPNHPWQKERIAEERELLGKYGLRN 37
>gnl|CDD|215331 PLN02613, PLN02613, endoglucanase.
Length = 498
Score = 27.6 bits (61), Expect = 8.8
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 82 FKSDIDWTMYWKSLYKDVTEEDIINYETKYKGSAEEINDF 121
++ ++ W W LYK E+ +NY KG ++ +N+F
Sbjct: 230 YQDELLWAAAW--LYKATGEKKYLNYVISNKGWSQAVNEF 267
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.
Length = 434
Score = 27.2 bits (61), Expect = 9.6
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 146 EEDRYRQIIQDLIDKEEVPAFDKFLNEAKSKRNRRKFEKEEKLFEKEKAKDERRKKSGV 204
EE ++I +L K + P+ K +K +R +KE++ EK K K R +
Sbjct: 365 EEPLKARVIDELRPKTKAPSEKKTGKPSKKVLAKRAEKKEKEK-EKPKVKKRHRDTKNI 422
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.311 0.131 0.358
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,266,639
Number of extensions: 1304877
Number of successful extensions: 1814
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1759
Number of HSP's successfully gapped: 166
Length of query: 258
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 163
Effective length of database: 6,723,972
Effective search space: 1096007436
Effective search space used: 1096007436
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.0 bits)