RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy16499
(258 letters)
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics,
PSI-2, protein STRU initiative; 2.90A {Klebsiella
pneumoniae subsp} PDB: 2kqx_A
Length = 329
Score = 61.5 bits (150), Expect = 3e-11
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 9/66 (13%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEED-----KEVATENDV----EKRK 65
KD Y +L V T + I+ A+ +L+ HPD E D K++A +V ++R
Sbjct: 28 KDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRA 87
Query: 66 VYDQTG 71
YDQ
Sbjct: 88 EYDQLW 93
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain,
chaperone; NMR {Homo sapiens}
Length = 155
Score = 57.9 bits (140), Expect = 8e-11
Identities = 18/90 (20%), Positives = 34/90 (37%), Gaps = 16/90 (17%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDR----VTEEDKEVATEN----------- 59
KD Y +L D +A +++ + KL L+ HPD+ V E +
Sbjct: 10 KDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKIL 69
Query: 60 -DVEKRKVYDQTGTLEDEDDEAIFKSDIDW 88
+ E ++ YD +D + + +
Sbjct: 70 GNEETKREYDLQRCEDDLRNVGPVDAQVYL 99
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein;
3.20A {Simian virus 40} SCOP: a.2.3.1
Length = 114
Score = 56.0 bits (135), Expect = 2e-10
Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 13/112 (11%)
Query: 13 KTKDLYEVLNVDKTA--TPEQIRKAFYKLSLVVHPDRVTEED--KEVATENDV----EKR 64
++ L ++L ++++A +RKA+ K HPD+ +E+ K++ T K
Sbjct: 6 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKY 65
Query: 65 KVYDQTGTLEDEDDEAIFKSDIDWTMYWKSLYKDVTEEDIINYETKYKGSAE 116
G D + + +D W+ + EE++ E E
Sbjct: 66 AHQPDFGGFWDATEIPTYGTD-----EWEQWWNAFNEENLFCSEEMPSSDDE 112
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase
regulat protein complex; 3.10A {Simian virus 40} PDB:
2pkg_C
Length = 174
Score = 57.6 bits (139), Expect = 2e-10
Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 8/74 (10%)
Query: 13 KTKDLYEVLNVDKTA--TPEQIRKAFYKLSLVVHPDRVTEED--KEVATENDV----EKR 64
++ L ++L ++++A +RKA+ K HPD+ +E+ K++ T K
Sbjct: 9 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKY 68
Query: 65 KVYDQTGTLEDEDD 78
G D +
Sbjct: 69 AHQPDFGGFWDATE 82
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 77
Score = 54.5 bits (132), Expect = 2e-10
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 9/66 (13%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEED-----KEVATENDV----EKRK 65
KD Y+ L + + A+ E+I++A+ + +L HPD+ E KE+A DV KR+
Sbjct: 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKRE 62
Query: 66 VYDQTG 71
++D+ G
Sbjct: 63 IFDRYG 68
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 109
Score = 55.5 bits (134), Expect = 2e-10
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 10/67 (14%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDR------VTEEDKEVATENDV----EKR 64
+ LY VL +DK AT + I+K++ KL+L HPD+ ++ KE+ + + KR
Sbjct: 17 ESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKR 76
Query: 65 KVYDQTG 71
+YD+ G
Sbjct: 77 NIYDKYG 83
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon,
chaperone; NMR {Homo sapiens}
Length = 99
Score = 55.0 bits (133), Expect = 2e-10
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 13/69 (18%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEVATE------------NDVE 62
YE+L+V ++A+ + I+KA+ + +L HPD+ ++KE A + +D
Sbjct: 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDK-NPDNKEFAEKKFKEVAEAYEVLSDKH 60
Query: 63 KRKVYDQTG 71
KR++YD+ G
Sbjct: 61 KREIYDRYG 69
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5,
structural genomics, PSI-2, protein structure
initiative; 1.25A {Saccharomyces cerevisiae}
Length = 92
Score = 54.3 bits (131), Expect = 4e-10
Identities = 22/66 (33%), Positives = 40/66 (60%), Gaps = 7/66 (10%)
Query: 13 KTKDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDR---VTEEDKEVATENDV----EKRK 65
K LY++L V +A ++++K + K +L HPD+ TE+ KE++ ++ +KR+
Sbjct: 6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKRE 65
Query: 66 VYDQTG 71
+YDQ G
Sbjct: 66 IYDQYG 71
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ
domain, endoplasmic reticulum, oxidor; 1.84A {Mus
musculus}
Length = 210
Score = 56.8 bits (137), Expect = 5e-10
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 10/67 (14%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDR------VTEEDKEVATENDV----EKR 64
++ Y +L V KTA+ +IR+AF KL+L +HPD+ + ++ +V + R
Sbjct: 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLR 61
Query: 65 KVYDQTG 71
K YD+ G
Sbjct: 62 KKYDKYG 68
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain,
all helix protein, chaperone, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 54.3 bits (131), Expect = 5e-10
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 10/67 (14%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDR------VTEEDKEVATENDV----EKR 64
LY++L V TAT QI+ A+Y+ + HPDR E ++ V R
Sbjct: 17 TALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLR 76
Query: 65 KVYDQTG 71
+ YD+
Sbjct: 77 RKYDRGL 83
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics,
molecular chaperone, NPPSFA; NMR {Mus musculus}
Length = 88
Score = 53.9 bits (130), Expect = 5e-10
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEED-----KEVATENDV----EKRK 65
D Y VL V +TA+ I+KA+ KL+ HPD+ + +++ ++ EKR
Sbjct: 17 FDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRT 76
Query: 66 VYDQTG 71
YD G
Sbjct: 77 NYDHYG 82
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain,
helix-turn-helix motif, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 92
Score = 53.5 bits (129), Expect = 8e-10
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 13/69 (18%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEVATE------------NDVE 62
+ YEVL V +A+PE I+KA+ KL+L HPD+ ++KE A + +D +
Sbjct: 9 ANYYEVLGVQASASPEDIKKAYRKLALRWHPDK-NPDNKEEAEKKFKLVSEAYEVLSDSK 67
Query: 63 KRKVYDQTG 71
KR +YD+ G
Sbjct: 68 KRSLYDRAG 76
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens}
Length = 82
Score = 53.0 bits (128), Expect = 9e-10
Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 13/69 (18%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEVATE------------NDVE 62
D YEVL+V + A+ E I+KA+ KL+L HPD+ E+KE A +D +
Sbjct: 9 VDYYEVLDVPRQASSEAIKKAYRKLALKWHPDK-NPENKEEAERRFKQVAEAYEVLSDAK 67
Query: 63 KRKVYDQTG 71
KR +YD+ G
Sbjct: 68 KRDIYDRYG 76
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone,
APC90013.2, structural genomics, protein structure
initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Length = 73
Score = 53.0 bits (128), Expect = 9e-10
Identities = 21/66 (31%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Query: 13 KTKDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEED---KEVATENDV----EKRK 65
K Y+VL V A+ +++KA+ K++L HPD+ + K+++ +V +KR+
Sbjct: 6 KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQ 65
Query: 66 VYDQTG 71
+YDQ G
Sbjct: 66 IYDQGG 71
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 78
Score = 52.3 bits (126), Expect = 2e-09
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 9/66 (13%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEED-----KEVATENDV----EKRK 65
D YE+L V + A+ E ++KA+ +L+L HPD+ K + T V EKRK
Sbjct: 7 GDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRK 66
Query: 66 VYDQTG 71
YDQ G
Sbjct: 67 QYDQFG 72
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 88
Score = 52.3 bits (126), Expect = 2e-09
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 9/66 (13%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEED-----KEVATENDV----EKRK 65
Y++L V K+A+ QI+KAF+KL++ HPD+ D +E+A + +RK
Sbjct: 7 GSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRK 66
Query: 66 VYDQTG 71
YD G
Sbjct: 67 EYDTLG 72
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone,
helix-turn-helix, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 112
Score = 52.8 bits (127), Expect = 2e-09
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 10/67 (14%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDR------VTEEDKEVATENDV----EKR 64
+D Y +L D+ ++ EQI F +L HPD+ E +++ ++ E R
Sbjct: 20 EDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESR 79
Query: 65 KVYDQTG 71
YD
Sbjct: 80 ARYDHWR 86
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 79
Score = 51.5 bits (124), Expect = 4e-09
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 10/67 (14%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDR------VTEEDKEVATENDV----EKR 64
D Y++L V + A+ ++I+KA+Y+L+ HPD E+ ++A +V KR
Sbjct: 7 GDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKR 66
Query: 65 KVYDQTG 71
K YD G
Sbjct: 67 KQYDAYG 73
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR
{Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Length = 103
Score = 51.5 bits (124), Expect = 7e-09
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 10/67 (14%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDR-----VTEEDKEVATE-----NDVEKR 64
+D YE+L V KTA +IRKA+ +L++ HPDR E + E D +KR
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62
Query: 65 KVYDQTG 71
YDQ G
Sbjct: 63 AAYDQYG 69
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, chaperone; NMR {Mus musculus} SCOP:
a.2.3.1
Length = 94
Score = 50.5 bits (121), Expect = 1e-08
Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 16/82 (19%)
Query: 6 QLCEKYYKTKDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDR----VTEEDKEVATE--- 58
+ + KD Y +L D +A +++ + KL L+ HPD+ V E +
Sbjct: 7 GMALEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFI 66
Query: 59 ---------NDVEKRKVYDQTG 71
+ E +K YD
Sbjct: 67 EIDQAWKILGNEETKKKYDLQR 88
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function; NMR {Homo sapiens} SCOP:
a.2.3.1
Length = 88
Score = 50.1 bits (120), Expect = 1e-08
Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 10/66 (15%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEVATE---------NDVEKRK 65
K++ V+ + +K +L L HPD+ E+ ++A E N +EK+
Sbjct: 16 KEVTSVVEQAWKLPESERKKIIRRLYLKWHPDK-NPENHDIANEVFKHLQNEINRLEKQA 74
Query: 66 VYDQTG 71
DQ
Sbjct: 75 FLDQNA 80
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin,
endoplasmic reticulum, oxidoreducta; 2.40A {Mus
musculus}
Length = 780
Score = 53.2 bits (127), Expect = 3e-08
Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 10/126 (7%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDR------VTEEDKEVA----TENDVEKR 64
++ Y +L V KTA+ +IR+AF KL+L +HPD+ + ++ D + R
Sbjct: 21 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLR 80
Query: 65 KVYDQTGTLEDEDDEAIFKSDIDWTMYWKSLYKDVTEEDIINYETKYKGSAEEINDFKRA 124
K YD+ G ED++ + Y +Y D E + F
Sbjct: 81 KKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITLERREFDAAVNSGELWFVNF 140
Query: 125 YVQGEG 130
Y G
Sbjct: 141 YSPGSS 146
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural
genomics, PSI-2, Pro structure initiative; 1.68A
{Caenorhabditis elegans}
Length = 109
Score = 49.3 bits (118), Expect = 4e-08
Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 14/75 (18%)
Query: 11 YYKTKDLYEVLNVDKTA-TPEQIRKAFYKLSLVVHPDRVTEED---------KEVATEND 60
Y ++ Y+VL V++ +++ KA+ L+ HPDRV ++ + +AT +
Sbjct: 11 YCGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYE 70
Query: 61 V----EKRKVYDQTG 71
E + YD
Sbjct: 71 TLKDDEAKTNYDYYL 85
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated
protein RAP1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 90
Score = 48.6 bits (116), Expect = 4e-08
Identities = 15/73 (20%), Positives = 30/73 (41%), Gaps = 9/73 (12%)
Query: 5 LQLCEKYYKTKDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEED-----KEVATEN 59
+ +KD +++L V A+ +++ KA+ KL++++HPD+ K V
Sbjct: 17 ADAIRRIRNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNAR 76
Query: 60 DV----EKRKVYD 68
K
Sbjct: 77 TALLKNIKSGPSS 89
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.5 bits (112), Expect = 2e-06
Identities = 38/233 (16%), Positives = 71/233 (30%), Gaps = 59/233 (25%)
Query: 10 KYYKT-----KDL---YEVLNV----DKTATPEQIRKAFYKLSLVV-HPDRVTEE----- 51
K + +L++ + + +K SLV P T
Sbjct: 373 KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432
Query: 52 -DKEVATENDVEK-RKVYDQTGTLEDEDDEAIFKSDIDWTMYWKSLYKDVTEEDIINYET 109
+ +V EN+ R + D + D + + +D Y+ S + I +
Sbjct: 433 LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD--QYFYS-H--------IGHHL 481
Query: 110 KYKGSAEEINDFKRAYVQGEGDMD-----LIFELVPFTHPSEE-------DRYRQIIQDL 157
K E + F+ ++ D + + + Y+ I D
Sbjct: 482 KNIEHPERMTLFRMVFL----DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN 537
Query: 158 IDKEE--VPAFDKFLNEAKSKRNRRKF---------EKEEKLFEKEKAKDERR 199
K E V A FL + + K+ ++E +FE E K +R
Sbjct: 538 DPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFE-EAHKQVQR 589
Score = 46.0 bits (108), Expect = 8e-06
Identities = 28/266 (10%), Positives = 68/266 (25%), Gaps = 87/266 (32%)
Query: 9 EKYYKTKDLYEVLNVDKTATPEQIRKAFYKLS----LVVHPDRVTEED------KEV-AT 57
++ Y ++ NV + ++R+A +L +++ K A
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID--------GVLGSGKTWVAL 168
Query: 58 ENDVEKRKVYDQTGTLEDEDDEAIFKSDIDWTMYWKSLYKDVTEEDIINYETKYKGSAEE 117
+ + I +W +L + E ++ E
Sbjct: 169 D-------------VCLSYKVQCKMDFKI----FWLNLKNCNSPETVL----------EM 201
Query: 118 INDFKRAYVQGEGDMDLIFELVPFTHPSEEDRYRQIIQD-------LI-----DKEEVPA 165
+ + S + R++++ L+ + + A
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261
Query: 166 FD---------------KFLNEAKSKR-----NRRKFEKEE--KLFEK---EKAKDERRK 200
F+ FL+ A + + +E L K + +D R+
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 201 KSGVRNSGADSSMDLIAAIQSKNANR 226
+ + +IA
Sbjct: 322 VL----TTNPRRLSIIAESIRDGLAT 343
Score = 44.1 bits (103), Expect = 3e-05
Identities = 36/169 (21%), Positives = 60/169 (35%), Gaps = 40/169 (23%)
Query: 96 YKD---VTEEDII-NYETKYKGSAEEINDFKRAYVQGEGDMDLIFELVPFTHPSEEDRYR 151
YKD V E+ + N++ K + D ++ + E ++D I
Sbjct: 18 YKDILSVFEDAFVDNFDCKD------VQDMPKSILSKE-EIDHIIMS-----KDAVSGTL 65
Query: 152 QIIQDLIDKEEVPAFDKFLNEAKSKRNRRKFEKEEKLFEKEKAKDERRKKSGVRNSGADS 211
++ L+ K+E KF+ E R ++ F K E+R+ S + +
Sbjct: 66 RLFWTLLSKQE-EMVQKFVEEV----LRINYK-----FLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 212 SMDLIAAIQ--SK-NANRESMFNGLIANLE----AKY------GGESGK 247
L Q +K N +R + L L AK G SGK
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG-SGK 163
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic
reticulum, protein folding, tetratricopeptiderepeat, J
domain, unfolded protein respons; 3.00A {Homo sapiens}
PDB: 2y4u_A
Length = 450
Score = 43.1 bits (102), Expect = 5e-05
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 13/80 (16%)
Query: 3 GLLQLCEKYYKTKDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDR-VTEEDKEVATEN-- 59
Q K + +D Y++L V + A ++I KA+ KL+L HPD EE+K+ A +
Sbjct: 370 EKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFI 429
Query: 60 ----------DVEKRKVYDQ 69
D E RK +D
Sbjct: 430 DIAAAKEVLSDPEMRKKFDD 449
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.8 bits (95), Expect = 4e-04
Identities = 32/199 (16%), Positives = 62/199 (31%), Gaps = 55/199 (27%)
Query: 30 EQIRKAFYKLSLVVHPDRVTEEDKE-------------VATENDVEKRKVYDQTGTLEDE 76
Q+++ F K L + +D+ V++ + K +DQ L
Sbjct: 31 SQLQEQFNK-ILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLT 89
Query: 77 DDEAIFKSDIDWTMYWKSLYKDVTEE-----DII-NY----------ETKYKGSA--EEI 118
+ E + D L ++ ++I NY K SA +
Sbjct: 90 EFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAV 149
Query: 119 NDFK-RAYVQ--GEGDMDLIF-ELVPFTHPSEE--DRYRQIIQDLIDKEEVPAFDKFLNE 172
+ + G+G+ D F EL + Y ++ DLI + +
Sbjct: 150 GEGNAQLVAIFGGQGNTDDYFEEL-------RDLYQTYHVLVGDLIKF----SAETLSEL 198
Query: 173 AKSKRNRRKFEKEEKLFEK 191
++ EK+F +
Sbjct: 199 IRTT------LDAEKVFTQ 211
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of
helices, viral protein; NMR {Murine polyomavirus} SCOP:
a.2.3.1
Length = 79
Score = 34.5 bits (79), Expect = 0.004
Identities = 13/64 (20%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Query: 10 KYYKTKDLYEVLNVDKTA--TPEQIRKAFYKLSLVVHPDR--VTEEDKEVATENDVEKRK 65
+ L E+L + + ++++A+ + SL++HPD+ +E+ + K +
Sbjct: 6 SRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTE 65
Query: 66 VYDQ 69
VY+
Sbjct: 66 VYNL 69
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN
auxilin-like J-domain containing protein, JAC1,
chloroplast accumulation response; 1.80A {Arabidopsis
thaliana}
Length = 106
Score = 35.4 bits (81), Expect = 0.004
Identities = 8/46 (17%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 18 YEVLNVDKTATPEQIRKAFYKLSLVVHPDRV-----TEEDKEVATE 58
++ + + +RK++ + L++HPD++ + K +A +
Sbjct: 43 WKPVPLMDMIEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEK 88
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14;
DNAJ-fold, chaperone, protein transport; HET: FLC;
2.00A {Saccharomyces cerevisiae}
Length = 71
Score = 34.3 bits (79), Expect = 0.004
Identities = 8/31 (25%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 18 YEVLNVDKTA-TPEQIRKAFYKLSLVVHPDR 47
++LN+ + T +++++ K+ L HPD+
Sbjct: 17 LQILNLTENTLTKKKLKEVHRKIMLANHPDK 47
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304,
center for structural genomics of infectious diseases,
CSGI; 2.15A {Vibrio cholerae}
Length = 174
Score = 35.3 bits (81), Expect = 0.008
Identities = 15/95 (15%), Positives = 29/95 (30%), Gaps = 17/95 (17%)
Query: 13 KTKDLYEVLNVDKTAT--PEQIRKAFYKLSLVVHPDRV---TEEDKEVATEN-------- 59
+ +E+ + + F L HPD +E D+ +A +
Sbjct: 2 NAMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAY 61
Query: 60 ----DVEKRKVYDQTGTLEDEDDEAIFKSDIDWTM 90
D +R Y + + + E D + M
Sbjct: 62 QTLKDPLRRAEYLLSLQGIEMNAEQQTLQDPMFLM 96
>2qwo_B Putative tyrosine-protein phosphatase auxilin;
chaperone-cochaperone complex, ATP-binding,
nucleotide-bindi nucleus, phosphorylation, stress
response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B*
2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Length = 92
Score = 33.8 bits (77), Expect = 0.008
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 18 YEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKE 54
++ + + TPEQ++K + K LVVHP + T + E
Sbjct: 36 WKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYE 72
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP:
a.2.3.1 PDB: 1xi5_J
Length = 182
Score = 34.1 bits (77), Expect = 0.023
Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Query: 18 YEVLNVDKTATPEQIRKAFYKLSLVVHPDRVT-EEDKEVATENDVEKRKVYDQTGTLEDE 76
++ + + TPEQ++K + K LVVHPD+ T + ++ A +E + E++
Sbjct: 120 WKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWS---EFENQ 176
Query: 77 DDEAIF 82
+ ++
Sbjct: 177 GQKPLY 182
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A
{Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Length = 171
Score = 33.0 bits (75), Expect = 0.042
Identities = 28/190 (14%), Positives = 64/190 (33%), Gaps = 36/190 (18%)
Query: 16 DLYEVLNVDKTAT--PEQIRKAFYKLSLVVHPDRV---TEEDKEVATENDVEKRKVYDQT 70
D + + + + + F L HPD+ ++ ++ A + + +
Sbjct: 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQ-- 59
Query: 71 GTLEDEDDEAIFKSDIDWTMYWKSLY-KDVTEEDIINYETKYKGSAEEINDFKRAYVQGE 129
TL A Y SL+ D+ E +T + E+ + + ++
Sbjct: 60 -TLRHPLMRAE---------YLLSLHGFDLASEQHTVRDTAFLMEQLELRE-ELDEIEQA 108
Query: 130 GDMDLIFELVPFTHPSEEDRYRQIIQDLIDKEEVPA---------FDKFLNEAKSKRNRR 180
D + + + R++ +++ L ++ A DK + A+
Sbjct: 109 KDEARLESFIKRVKKMFDTRHQLMVEQLDNETWDAAADTCRKLRFLDKLRSSAE------ 162
Query: 181 KFEKEEKLFE 190
+ EEKL +
Sbjct: 163 --QLEEKLLD 170
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Length = 181
Score = 31.9 bits (72), Expect = 0.14
Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 14/72 (19%)
Query: 14 TKDLYEVLNVDKTATP-------EQIRKAFYKLSLVVHPDRVTEEDKEVATEN------- 59
T YE+ ++RK + +L HPD + ++ +T N
Sbjct: 10 TSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLK 69
Query: 60 DVEKRKVYDQTG 71
D +R Y
Sbjct: 70 DPLRRSQYMLKL 81
>2b5i_B Interleukin-2 receptor beta chain; four-helix bundle, fibronectin
domain, cytokine-cytokine REC complex; HET: NAG; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3qaz_B*
2erj_B*
Length = 214
Score = 31.7 bits (71), Expect = 0.17
Identities = 16/146 (10%), Positives = 39/146 (26%), Gaps = 10/146 (6%)
Query: 5 LQLCEKYYKTKDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEVATENDVEKR 64
+ + + E+L V + + + + D VT V V R
Sbjct: 35 VHAWPDRRRWQQTCELLPVSQASWACNLILGAPDSQKLTTVDIVT---LRVLCREGVRWR 91
Query: 65 KVYDQTGTLED-------EDDEAIFKSDIDWTMYWKSLYKDVTEEDIINYETKYKGSAEE 117
+ Q + + + + W+ E + +E +
Sbjct: 92 VMAIQDFKPFENLRLMAPISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPGHT 151
Query: 118 INDFKRAYVQGEGDMDLIFELVPFTH 143
+ ++ + + + L P T
Sbjct: 152 WEEAPLLTLKQKQEWICLETLTPDTQ 177
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural
genomics medical relev protein structure initiative,
PSI-2; 3.00A {Homo sapiens}
Length = 207
Score = 30.5 bits (68), Expect = 0.42
Identities = 11/68 (16%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
Query: 13 KTKDLYEVLNVDKTAT--PEQIRKAFYKLSLVVHPDRV---TEEDKEVATENDVEKRKVY 67
T+D + +++ +++ +++ + +L +VHPD ++ +K+ + ++ Y
Sbjct: 41 PTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAY 100
Query: 68 DQTGTLED 75
TL
Sbjct: 101 K---TLLA 105
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation,
disulfide bonds tryparedoxin, thioredoxin, trypanosome;
1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A
1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Length = 146
Score = 28.1 bits (63), Expect = 1.5
Identities = 9/56 (16%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 1 MKGLLQLCEKYYKTKDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEVA 56
L++ +K++++K+ EV+ + F K+ + P +E ++++
Sbjct: 47 TPQLIEFYDKFHESKNF-EVVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLS 101
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus}
PDB: 3o4x_E 2bap_D
Length = 457
Score = 28.7 bits (64), Expect = 2.0
Identities = 16/95 (16%), Positives = 41/95 (43%), Gaps = 10/95 (10%)
Query: 166 FDKFLNEAKS--KRNRRKFEKEEKLFEKEKAKDERRKKSGVRNSGADSSMDLIAAIQSKN 223
F N K N+++ E EEK+ + AK++ K+ + + +D+ +
Sbjct: 369 LHNFRNMFLQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDM-----NAE 423
Query: 224 ANRESMFNGLIANLEAKYGGESGKKETRRQSGRKK 258
+ + + L+ L++ G + +++ + +K
Sbjct: 424 GDETGVMDSLLEALQS---GAAFRRKRGPRQVNRK 455
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 2.3
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 176 KRNRRKFEKEEKLFEKEKA 194
K+ +K + KL+ + A
Sbjct: 19 KQALKKLQASLKLYADDSA 37
>2ls5_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, NEW structural genomics research
consortium; NMR {Bacteroides thetaiotaomicron}
Length = 159
Score = 26.9 bits (60), Expect = 4.9
Identities = 5/58 (8%), Positives = 20/58 (34%), Gaps = 6/58 (10%)
Query: 1 MKGLLQLCEKYYKTKDLYEVLNVDKTATPEQIRKAF--YKLSLVVHPDRVTEEDKEVA 56
M + + +K + ++ +D+ E++ ++ + D ++
Sbjct: 52 MPFIEKDIWLKHKDNADFALIGIDRDEPLEKVLAFAKSTGVTYPLGLD----PGADIF 105
>1tuo_A Putative phosphomannomutase; thermus thermophilus HB8, biosynthesis
of alginate, structural genomics; 1.70A {Thermus
thermophilus}
Length = 464
Score = 27.5 bits (62), Expect = 5.0
Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 5/43 (11%)
Query: 98 DVTE--EDIINYETKYKGSAEEINDFKRAYVQGEG---DMDLI 135
+ + E ++ E + A E D + AY + D+ +
Sbjct: 131 EEAKAIEALVPEEARALEGAYETLDLREAYFEALKAHLDLKAL 173
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl
ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A
{Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*
Length = 460
Score = 27.2 bits (61), Expect = 6.1
Identities = 4/31 (12%), Positives = 9/31 (29%)
Query: 159 DKEEVPAFDKFLNEAKSKRNRRKFEKEEKLF 189
+ + K + A + + LF
Sbjct: 17 RGSHMASATKNASSATPATMTSMVSQRQDLF 47
>3opy_B 6-phosphofructo-1-kinase beta-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 941
Score = 27.0 bits (60), Expect = 7.0
Identities = 25/203 (12%), Positives = 60/203 (29%), Gaps = 28/203 (13%)
Query: 26 TATPEQIRKA--FYK----LSLVVHPDR--VTEEDKEVATENDVEKRKVYDQTGTLEDED 77
++ + FY ++ + ++ + +E ++ + ++ D
Sbjct: 17 APNISLLQASIDFYTNFLGFAIRKNSNQKLFWLQLEEDQNNVSIQLILDPEHAASVSQID 76
Query: 78 DEAIFKSDIDWTMYWKSLYKDVTEEDIINYETKYKGSAEEINDFKRAYVQGEGDMDLIFE 137
+ + W+S+ + +I + + + D Q ++
Sbjct: 77 QNIRNLTRSLYRKDWRSI-----QSNIAFKSSSLSKLVKLLKDGGHPVQQSPNEIS---- 127
Query: 138 LVPFTHPSEEDRYRQIIQDLIDKEEVPAFDKFLNEAKSKRNRRKFEKEEKLFEKEKAKDE 197
P E + + F +NE + + + EK +
Sbjct: 128 ------PFEVYTVDPLGSLIGFSGFKNPFA--VNERSLLPKVSEEKAYRAEDDSEKLLNP 179
Query: 198 RRKKSGVRNSGADSS-MDLIAAI 219
RK GV SG DS M+ +
Sbjct: 180 VRKTIGVMTSGGDSPGMN--PFV 200
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR
{Escherichia coli}
Length = 90
Score = 25.3 bits (56), Expect = 7.4
Identities = 5/24 (20%), Positives = 16/24 (66%)
Query: 134 LIFELVPFTHPSEEDRYRQIIQDL 157
+ +++ F ++E ++RQ+ ++L
Sbjct: 1 MTIDVLQFKDEAQEQQFRQLTEEL 24
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 26.9 bits (59), Expect = 8.4
Identities = 20/159 (12%), Positives = 51/159 (32%), Gaps = 20/159 (12%)
Query: 26 TATPEQIRKAFYKLSLVVHPDRVTEEDKEVATENDVEKRKVYDQTGTLEDEDDEAIFKSD 85
T E +R+A+ ++ + + V +++++ + E V D+ L + SD
Sbjct: 68 NDTIENLRQAYLRMGFEEYINPVIVDERDIYKQFGPEAMAVLDRCFYLAGLPRPDVGLSD 127
Query: 86 -IDWTMYWKSLYKDVTEEDIINYETKYKGSAEE----INDFKRAYVQGEG----DMDLIF 136
+ + +E + YK + + + A ++ +F
Sbjct: 128 EKISQIEKLGIKVSEHKESLQKILHGYKKGTLDGDDLVLEISNALEISSEMGLKILEDVF 187
Query: 137 ELVPFTHPSEEDR----------YRQIIQDLIDKEEVPA 165
+ + DL++K+ +P
Sbjct: 188 PEFKDLTAVSSKLTLRSHMTSGWFLT-VSDLMNKKPLPF 225
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.131 0.358
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,903,969
Number of extensions: 238557
Number of successful extensions: 715
Number of sequences better than 10.0: 1
Number of HSP's gapped: 664
Number of HSP's successfully gapped: 85
Length of query: 258
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 166
Effective length of database: 4,133,061
Effective search space: 686088126
Effective search space used: 686088126
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (26.1 bits)