RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy16499
(258 letters)
>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
{Simian virus 40, Sv40 [TaxId: 10633]}
Length = 114
Score = 50.2 bits (119), Expect = 8e-09
Identities = 22/112 (19%), Positives = 42/112 (37%), Gaps = 13/112 (11%)
Query: 13 KTKDLYEVLNVDKTA--TPEQIRKAFYKLSLVVHPDRVTEEDKEVATE------NDVEKR 64
++ L ++L ++++A +RKA+ K HPD+ +E+K D K
Sbjct: 6 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKY 65
Query: 65 KVYDQTGTLEDEDDEAIFKSDIDWTMYWKSLYKDVTEEDIINYETKYKGSAE 116
G D + + +D W+ + EE++ E E
Sbjct: 66 AHQPDFGGFWDATEIPTYGTD-----EWEQWWNAFNEENLFCSEEMPSSDDE 112
>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain
{Escherichia coli [TaxId: 562]}
Length = 75
Score = 43.8 bits (103), Expect = 6e-07
Identities = 24/67 (35%), Positives = 34/67 (50%), Gaps = 10/67 (14%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPD----------RVTEEDKEVATENDVEKR 64
+D YE+L V KTA +IRKA+ +L++ HPD + E + D +KR
Sbjct: 3 QDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKR 62
Query: 65 KVYDQTG 71
YDQ G
Sbjct: 63 AAYDQYG 69
>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 43.9 bits (103), Expect = 6e-07
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 9/66 (13%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDR-----VTEEDKEVA----TENDVEKRK 65
KD Y+ L + + A+ E+I++A+ + +L HPD+ E+ KE+A +D KR+
Sbjct: 3 KDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKRE 62
Query: 66 VYDQTG 71
++D+ G
Sbjct: 63 IFDRYG 68
>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3
(J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 94
Score = 43.9 bits (103), Expect = 1e-06
Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 16/81 (19%)
Query: 7 LCEKYYKTKDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEVATEN------- 59
+ + KD Y +L D +A +++ + KL L+ HPD+ + + E
Sbjct: 8 MALEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIE 67
Query: 60 ---------DVEKRKVYDQTG 71
+ E +K YD
Sbjct: 68 IDQAWKILGNEETKKKYDLQR 88
>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 40.0 bits (93), Expect = 2e-05
Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 8/65 (12%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDR-------VTEEDKEVATENDV-EKRKV 66
K++ V+ + +K +L L HPD+ E K + E + EK+
Sbjct: 16 KEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAF 75
Query: 67 YDQTG 71
DQ
Sbjct: 76 LDQNA 80
>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId:
9913]}
Length = 98
Score = 38.8 bits (90), Expect = 7e-05
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 13/66 (19%)
Query: 15 KDLYEVLNVDKTATPEQIRKAFYKLSLVVHPDRVTEEDKEVATE-------------NDV 61
+ ++ + + TPEQ++K + K LVVHPD+ T + E + +
Sbjct: 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQ 92
Query: 62 EKRKVY 67
++ +Y
Sbjct: 93 GQKPLY 98
>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain
{Escherichia coli [TaxId: 562]}
Length = 76
Score = 35.0 bits (80), Expect = 0.001
Identities = 8/64 (12%), Positives = 17/64 (26%), Gaps = 2/64 (3%)
Query: 16 DLYEVLNVDKTAT--PEQIRKAFYKLSLVVHPDRVTEEDKEVATENDVEKRKVYDQTGTL 73
D + + + + + F L HPD+ + + + TL
Sbjct: 2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTL 61
Query: 74 EDED 77
Sbjct: 62 RHPL 65
>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain
{Murine polyomavirus [TaxId: 10634]}
Length = 79
Score = 33.4 bits (76), Expect = 0.004
Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 8/68 (11%)
Query: 13 KTKDLYEVLNVDKTA--TPEQIRKAFYKLSLVVHPDRVTEED------KEVATENDVEKR 64
+ L E+L + + ++++A+ + SL++HPD+ T
Sbjct: 9 DKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYN 68
Query: 65 KVYDQTGT 72
+ GT
Sbjct: 69 LRMNLGGT 76
>d1u8xx2 d.162.1.2 (X:170-445) Maltose-6'-phosphate glucosidase GlvA
{Bacillus subtilis [TaxId: 1423]}
Length = 276
Score = 34.9 bits (80), Expect = 0.005
Identities = 26/150 (17%), Positives = 43/150 (28%), Gaps = 21/150 (14%)
Query: 97 KDVTEEDIINYETKYKGSAEEINDFKRAYVQGEGDMDLIFELVPFTHPSEEDRYRQIIQD 156
D+ + + E + ++ + P T P+ +Y D
Sbjct: 46 NDLMPKLKEHVSQYGYIPKTEAEAVEASWNDTFAKARDVQAADPDTLPNTYLQYYLFPDD 105
Query: 157 LIDKEEVPAFDKFLNEAKSKRNRRKFEKEEKLFEKEKAKDERRKKSGVR----NSGADSS 212
++ K N ++ N E E + R + S + A
Sbjct: 106 MVKK---------SNPNHTRANEVM-EGREAFIFSQCDMITREQSSENSEIKIDDHASYI 155
Query: 213 MDLIAAIQSKNANRESMF-----NGLIANL 237
+DL AI E M NG IAN
Sbjct: 156 VDLARAIA--YNTGERMLLIVENNGAIANF 183
>d1sh0a_ e.8.1.4 (A:) Viral RNA polymerase {Norwalk virus [TaxId:
11983]}
Length = 502
Score = 28.0 bits (62), Expect = 1.2
Identities = 9/54 (16%), Positives = 14/54 (25%), Gaps = 2/54 (3%)
Query: 155 QDLIDKEEVPAFDKFLNEAKSKRNRRKFEKEEKLFEKEKAKDERRKKSGVRNSG 208
D + E K ++A + K KDE K +
Sbjct: 123 NDCWNGES--FTGKLADQASKANLMFEEGKNMTPVYTGALKDELVKTDKIYGKI 174
>d2d3qa1 d.58.4.14 (A:4-442) Decolorizing peroxidase DyP {Geotrichum
candidum [TaxId: 27317]}
Length = 439
Score = 26.6 bits (58), Expect = 3.6
Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 6/77 (7%)
Query: 150 YRQIIQDLIDKEEVPAFDKFLNEAKSKRNRRKFEKEEKLFEKEKAKDERRKKSGVRNSGA 209
+R Q VP F+ + N +++ E A+ R KSG A
Sbjct: 217 FRHFQQK------VPEFNAYTLANAIPANSAGNLTQQEGAEFLGARMFGRWKSGAPIDLA 270
Query: 210 DSSMDLIAAIQSKNANR 226
++ D + N
Sbjct: 271 PTADDPALGADPQRNNN 287
>d1m1na_ c.92.2.3 (A:) Nitrogenase iron-molybdenum protein, alpha
chain {Azotobacter vinelandii [TaxId: 354]}
Length = 477
Score = 25.8 bits (56), Expect = 5.6
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
Query: 183 EKEEKLFEK------EKAKDERRKKSGVRNSGADSSMDLIAA 218
E+ E L ++ EKA+ +R K V + S I +
Sbjct: 4 EEVESLIQEVLEVYPEKARKDRNKHLAVNDPAVTQSKKCIIS 45
>d1y7ea1 b.49.3.1 (A:101-233) Probable aminopeptidase ApeA {Borrelia
burgdorferi [TaxId: 139]}
Length = 133
Score = 24.8 bits (54), Expect = 6.5
Identities = 11/71 (15%), Positives = 30/71 (42%), Gaps = 8/71 (11%)
Query: 40 SLVVHPDRVTEEDKEVATENDVEKRKVYDQTGTLEDEDDEAIFKSDIDWTMYWKSLYK-- 97
++ H DR + +K+ + E K+ + +E ++ + + + + +
Sbjct: 66 DILPHLDRKIQRNKKSDEIVEGENLKILIGSLPIETKEKNKVKLATLQL------IKEKY 119
Query: 98 DVTEEDIINYE 108
+ EED ++ E
Sbjct: 120 KIEEEDFVSSE 130
>d1e7ua4 d.144.1.4 (A:726-1094) Phoshoinositide 3-kinase (PI3K),
catalytic domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 369
Score = 25.4 bits (55), Expect = 6.9
Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 4/51 (7%)
Query: 119 NDFKRAYVQGEGDMDLIFELVPFTHPSEEDRYRQIIQDLIDKEEVPAFDKF 169
DF + + + E VPF + + K+ F KF
Sbjct: 238 IDFGHILGNYKSFLGINKERVPFVLTPDF----LFVMGTSGKKTSLHFQKF 284
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 55
Score = 23.4 bits (51), Expect = 7.4
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 8/36 (22%)
Query: 1 MKGLLQLCEKYYKTKDLYEVLNVDKTATPEQIRKAF 36
+KGLL + K V N+ K TPE+IRK F
Sbjct: 27 IKGLLDVTCKT--------VANMIKGKTPEEIRKTF 54
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.311 0.131 0.358
Gapped
Lambda K H
0.267 0.0567 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 947,084
Number of extensions: 46477
Number of successful extensions: 166
Number of sequences better than 10.0: 1
Number of HSP's gapped: 156
Number of HSP's successfully gapped: 35
Length of query: 258
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 175
Effective length of database: 1,268,006
Effective search space: 221901050
Effective search space used: 221901050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.2 bits)