BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy16503
(244 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 115 bits (288), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 86/152 (56%), Gaps = 2/152 (1%)
Query: 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGKIDKILLKSWAPQ 74
NGV+ FS+GS + + ++ A QIPQ+V+W+++G L W PQ
Sbjct: 21 NGVVVFSLGSXVSNXT--EERANVIASALAQIPQKVLWRFDGNKPDTLGLNTRLYKWIPQ 78
Query: 75 RDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQ 134
D+L HP + FI+HGG G EA+Y G+P +GIP+F DQ NI + G V + ++
Sbjct: 79 NDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDNIAHXKARGAAVRVDFNT 138
Query: 135 ITEETVLVALRTVLGNPSYKKRAEKVARLFQD 166
+ +L AL+ V+ +PSYK+ K++R+ D
Sbjct: 139 XSSTDLLNALKRVINDPSYKENVXKLSRIQHD 170
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 68.9 bits (167), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 84/173 (48%), Gaps = 15/173 (8%)
Query: 2 NETDIKKFLDESVNG-VIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMS 60
+E ++LD+ N V+Y S GS++ + P + A + E+ IW + G+
Sbjct: 259 DEHGCLEWLDQHENSSVVYISFGSVV---TPPPHELTALAESLEECGFPFIWSFRGDPKE 315
Query: 61 GKIDKILLK---------SWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMF 111
K+ K L+ +WAPQ +IL H +V VF++H G+ E + GVP+I P F
Sbjct: 316 -KLPKGFLERTKTKGKIVAWAPQVEILKHSSVGVFLTHSGWNSVLECIVGGVPMISRPFF 374
Query: 112 GDQKANIRVVEKA-GFGVTLPYDQITEETVLVALRTVLGNPSYKKRAEKVARL 163
GDQ N + E GV + +T+E++ AL + + +K+ +L
Sbjct: 375 GDQGLNTILTESVLEIGVGVDNGVLTKESIKKALELTMSSEKGGIMRQKIVKL 427
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 2/96 (2%)
Query: 65 KILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKA 124
+ + W PQ DIL FI+H G T EAL + VP++ +P +Q N + +
Sbjct: 306 NVEVHQWVPQLDILT--KASAFITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVEL 363
Query: 125 GFGVTLPYDQITEETVLVALRTVLGNPSYKKRAEKV 160
G G +P DQ+T E + A+ V +P +R V
Sbjct: 364 GLGRHIPRDQVTAEKLREAVLAVASDPGVAERLAAV 399
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 39/58 (67%)
Query: 64 DKILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVV 121
D+ L+ SW PQ +L+HP++ F++H G+ TTE++ +GVP++ P F DQ + R +
Sbjct: 353 DRGLIASWCPQDKVLNHPSIGGFLTHCGWNSTTESICAGVPMLCWPFFADQPTDCRFI 410
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 81/182 (44%), Gaps = 15/182 (8%)
Query: 2 NETDIKKFLDE-SVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENM- 59
N T ++L E V+Y S G++ + P + A A E IW +
Sbjct: 257 NTTGCLQWLKERKPTSVVYISFGTV---TTPPPAEVVALSEALEASRVPFIWSLRDKARV 313
Query: 60 ---SGKIDKI----LLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFG 112
G ++K ++ WAPQ ++L H V F++H G+ E++ GVP+I P FG
Sbjct: 314 HLPEGFLEKTRGYGMVVPWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFFG 373
Query: 113 DQKANIRVVEKA-GFGVTLPYDQITEETVLVALRTVLGNPSYKKRAEKVARLFQ--DRPM 169
DQ+ N R+VE GV + T+ ++ +L KK E + L + DR +
Sbjct: 374 DQRLNGRMVEDVLEIGVRIEGGVFTKSGLMSCFDQILSQEKGKKLRENLRALRETADRAV 433
Query: 170 PP 171
P
Sbjct: 434 GP 435
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 16/95 (16%)
Query: 71 WAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTL 130
WAPQ +L HP+ F++H G+ T E++ SG+P+I P++ +QK N ++
Sbjct: 346 WAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLL--------- 396
Query: 131 PYDQITEETVLVALRTVLGNPSYKKRAEKVARLFQ 165
E + ALR G+ +R E+VAR+ +
Sbjct: 397 ------SEDIRAALRPRAGDDGLVRR-EEVARVVK 424
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 13/139 (9%)
Query: 6 IKKFLDESVN-GVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENM---SG 61
I K+LDE + V++ GS+ G SF + + + R +W E G
Sbjct: 266 ILKWLDEQPDKSVVFLCFGSM--GVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEG 323
Query: 62 KID------KILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQK 115
++ K ++ WAPQ ++L H + F+SH G+ E+++ GVPI+ P++ +Q+
Sbjct: 324 FLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQ 383
Query: 116 AN-IRVVEKAGFGVTLPYD 133
N R+V++ G G+ L D
Sbjct: 384 LNAFRLVKEWGVGLGLRVD 402
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 13/139 (9%)
Query: 6 IKKFLDESVN-GVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENM---SG 61
I K+LDE + V++ GS+ G SF + + + R +W E G
Sbjct: 266 ILKWLDEQPDKSVVFLCFGSM--GVSFGPSQIREIALGLKHSGVRFLWSNSAEKKVFPEG 323
Query: 62 KID------KILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQK 115
++ K ++ WAPQ ++L H + F+SH G+ E+++ GVPI+ P++ +Q+
Sbjct: 324 FLEWMELEGKGMICGWAPQVEVLAHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQ 383
Query: 116 AN-IRVVEKAGFGVTLPYD 133
N R+V++ G G+ L D
Sbjct: 384 LNAFRLVKEWGVGLGLRVD 402
>pdb|4G2T|A Chain A, Crystal Structure Of Streptomyces Sp. Sf2575
Glycosyltransferase Ssfs6, Complexed With Thymidine
Diphosphate
Length = 397
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%)
Query: 81 PNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETV 140
P V + HGG T L GVP + +P+ + + R++ AG GV +P++Q E+V
Sbjct: 298 PACDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAGVESV 357
Query: 141 LVALRTVLGNPSYKKRAEKVARLFQDRPMP 170
L A + + SY A ++A P P
Sbjct: 358 LAACARIRDDSSYVGNARRLAAEXATLPTP 387
>pdb|4FZR|A Chain A, Crystal Structure Of Ssfs6, Streptomyces Sp. Sf2575
Glycosyltransferase
Length = 398
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 44/90 (48%)
Query: 81 PNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETV 140
P V + HGG T L GVP + +P+ + + R++ AG GV +P++Q E+V
Sbjct: 299 PACDVVVHHGGHGTTLTCLSEGVPQVSVPVIAEVWDSARLLHAAGAGVEVPWEQAGVESV 358
Query: 141 LVALRTVLGNPSYKKRAEKVARLFQDRPMP 170
L A + + SY A ++A P P
Sbjct: 359 LAACARIRDDSSYVGNARRLAAEXATLPTP 388
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 66/149 (44%), Gaps = 10/149 (6%)
Query: 17 VIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQ-----RVIWKWEGENMSGKIDKILLKSW 71
V+ S+GS + P+ R+ +RAF +P ++ K + D + + W
Sbjct: 234 VVLVSLGSAFTKQ--PAFYREC-VRAFGNLPGWHLVLQIGRKVTPAELGELPDNVEVHDW 290
Query: 72 APQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLP 131
PQ IL +F++H G G+ E L + P+I +P DQ N +++ G L
Sbjct: 291 VPQLAILRQ--ADLFVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADMLQGLGVARKLA 348
Query: 132 YDQITEETVLVALRTVLGNPSYKKRAEKV 160
++ T + + ++ +P +R ++
Sbjct: 349 TEEATADLLRETALALVDDPEVARRLRRI 377
>pdb|3IAA|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
pdb|3IAA|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp Bound Form
Length = 416
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 22/150 (14%)
Query: 5 DIKKFLDESVNGVIYFSMGSIIQGKSFPSDKRKAFLR----AFEQIPQRVIWKWEGENMS 60
D ++FL E + + G +F + R F R AF+ P V+ +
Sbjct: 232 DDRRFLGEWTRPADDLPVVLVSLGTTF--NDRPGFFRDCARAFDGQPWHVV-----XTLG 284
Query: 61 GKIDKILLKS---------WAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMF 111
G++D L W P +L+ V ++HGG EALY G P++ +P
Sbjct: 285 GQVDPAALGDLPPNVEAHRWVPHVKVLE--QATVCVTHGGXGTLXEALYWGRPLVVVPQS 342
Query: 112 GDQKANIRVVEKAGFGVTLPYDQITEETVL 141
D + R V++ G G LP ++ +T+L
Sbjct: 343 FDVQPXARRVDQLGLGAVLPGEKADGDTLL 372
>pdb|3RSC|A Chain A, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
pdb|3RSC|B Chain B, Crystal Structure Of Calg2, Calicheamicin
Glycosyltransferase, Tdp And Calicheamicin T0 Bound Form
Length = 415
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 64/150 (42%), Gaps = 22/150 (14%)
Query: 5 DIKKFLDESVNGVIYFSMGSIIQGKSFPSDKRKAFLR----AFEQIPQRVIWKWEGENMS 60
D ++FL E + + G +F + R F R AF+ P V+ +
Sbjct: 232 DDRRFLGEWTRPADDLPVVLVSLGTTF--NDRPGFFRDCARAFDGQPWHVV-----XTLG 284
Query: 61 GKIDKILLKS---------WAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMF 111
G++D L W P +L+ V V +HGG EALY G P++ +P
Sbjct: 285 GQVDPAALGDLPPNVEAHRWVPHVKVLEQATVCV--THGGXGTLXEALYWGRPLVVVPQS 342
Query: 112 GDQKANIRVVEKAGFGVTLPYDQITEETVL 141
D + R V++ G G LP ++ +T+L
Sbjct: 343 FDVQPXARRVDQLGLGAVLPGEKADGDTLL 372
>pdb|2P6P|A Chain A, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
pdb|2P6P|B Chain B, X-Ray Crystal Structure Of C-C Bond-Forming
Dtdp-D-Olivose-Transferase Urdgt2
Length = 384
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 71/161 (44%), Gaps = 14/161 (8%)
Query: 18 IYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGKIDKIL--LKSWAPQR 75
+ + GS + +S+ D+ FLR + + +W+ E + D + L++ PQ
Sbjct: 213 VLVTSGSRVAKESY--DRNFDFLRGL----AKDLVRWDVELIVAAPDTVAEALRAEVPQA 266
Query: 76 DI----LD--HPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVT 129
+ LD P + + H G + T L +GVP + IP +A R V G +
Sbjct: 267 RVGWTPLDVVAPTCDLLVHHAGGVSTLTGLSAGVPQLLIPKGSVLEAPARRVADYGAAIA 326
Query: 130 LPYDQITEETVLVALRTVLGNPSYKKRAEKVARLFQDRPMP 170
L + + E + + + + +Y +RA+ ++R P+P
Sbjct: 327 LLPGEDSTEAIADSCQELQAKDTYARRAQDLSREISGMPLP 367
>pdb|2YJN|A Chain A, Structure Of The Glycosyltransferase Eryciii From The
Erythromycin Biosynthetic Pathway, In Complex With Its
Activating Partner, Erycii
Length = 441
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/163 (19%), Positives = 66/163 (40%), Gaps = 5/163 (3%)
Query: 11 DESVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGKI---DKIL 67
DE + ++G + S + L A + +I ++ + + G D +
Sbjct: 263 DEPERRRVCLTLGISSRENSIGQVSIEELLGAVGDVDAEIIATFDAQQLEGVANIPDNVR 322
Query: 68 LKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFG 127
+ P +L P + HGG A GVP + +P D + ++ G G
Sbjct: 323 TVGFVPMHALL--PTCAATVHHGGPGSWHTAAIHGVPQVILPDGWDTGVRAQRTQEFGAG 380
Query: 128 VTLPYDQITEETVLVALRTVLGNPSYKKRAEKVARLFQDRPMP 170
+ LP ++T + + +++ VL +P+++ A ++ P P
Sbjct: 381 IALPVPELTPDQLRESVKRVLDDPAHRAGAARMRDDMLAEPSP 423
>pdb|3OTG|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp Bound Form
pdb|3OTH|A Chain A, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
pdb|3OTH|B Chain B, Crystal Structure Of Calg1, Calicheamicin
Glycostyltransferase, Tdp And Calicheamicin Alpha3i
Bound Form
Length = 412
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 65 KILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKA 124
+ L+SW PQ +L P+V + + HGG T AL +GVP + P GD AN + V +A
Sbjct: 293 NVRLESWVPQAALL--PHVDLVVHHGGSGTTLGALGAGVPQLSFPWAGDSFANAQAVAQA 350
Query: 125 GFGVTLPYDQITEETVLVALRTVLGNPSYK 154
G G L D I+ ++V A + +L SY+
Sbjct: 351 GAGDHLLPDNISPDSVSGAAKRLLAEESYR 380
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 53/125 (42%), Gaps = 19/125 (15%)
Query: 37 KAFLRAFEQIPQRVIWKWEGENMSGKIDKILL---------KSWAPQRDILDHPNVKVFI 87
+A +AF P V+ + G +D +L W P +L H + +
Sbjct: 250 RACAQAFADTPWHVVXA-----IGGFLDPAVLGPLPPNVEAHQWIPFHSVLAH--ARACL 302
Query: 88 SHGGFLGTTEALYSGVPIIGIPMFGDQKANI--RVVEKAGFGVTLPYDQITEETVLVALR 145
+HG EA +GVP++ +P F + A RV+E G G L DQ+ ++ A+
Sbjct: 303 THGTTGAVLEAFAAGVPLVLVPHFATEAAPSAERVIE-LGLGSVLRPDQLEPASIREAVE 361
Query: 146 TVLGN 150
+ +
Sbjct: 362 RLAAD 366
>pdb|3H4I|A Chain A, Chimeric Glycosyltransferase For The Generation Of Novel
Natural Products
pdb|3H4T|A Chain A, Chimeric Glycosyltransferase For The Generation Of Novel
Natural Products - Gtfah1 In Complex With Udp-2f-Glc
Length = 404
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 55/146 (37%), Gaps = 9/146 (6%)
Query: 18 IYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWK--WEGENMSGKIDKILLKSWAPQR 75
+Y GS P++ + + A +RV+ W G + D L+ +
Sbjct: 224 VYVGFGS----GPAPAEAARVAIEAVRAQGRRVVLSSGWAGLGRIDEGDDCLVVGEVNHQ 279
Query: 76 DILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQI 135
+ V + HGG TT +G P + +P DQ V G GV
Sbjct: 280 VLFGR--VAAVVHHGGAGTTTAVTRAGAPQVVVPQKADQPYYAGRVADLGVGVAHDGPTP 337
Query: 136 TEETVLVALRTVLGNPSYKKRAEKVA 161
T E++ AL T L P + RA VA
Sbjct: 338 TVESLSAALATAL-TPGIRARAAAVA 362
>pdb|3N99|A Chain A, Crystal Structure Of Tm1086
pdb|3N99|B Chain B, Crystal Structure Of Tm1086
pdb|3N99|C Chain C, Crystal Structure Of Tm1086
pdb|3N99|D Chain D, Crystal Structure Of Tm1086
pdb|3N99|E Chain E, Crystal Structure Of Tm1086
pdb|3N99|G Chain G, Crystal Structure Of Tm1086
pdb|3N99|H Chain H, Crystal Structure Of Tm1086
pdb|3N99|I Chain I, Crystal Structure Of Tm1086
pdb|3N99|J Chain J, Crystal Structure Of Tm1086
pdb|3N99|K Chain K, Crystal Structure Of Tm1086
pdb|3N99|L Chain L, Crystal Structure Of Tm1086
pdb|3N99|M Chain M, Crystal Structure Of Tm1086
pdb|3N99|N Chain N, Crystal Structure Of Tm1086
pdb|3N99|O Chain O, Crystal Structure Of Tm1086
pdb|3N99|P Chain P, Crystal Structure Of Tm1086
pdb|3N99|S Chain S, Crystal Structure Of Tm1086
pdb|3N99|T Chain T, Crystal Structure Of Tm1086
pdb|3N99|U Chain U, Crystal Structure Of Tm1086
pdb|3N99|V Chain V, Crystal Structure Of Tm1086
pdb|3N99|X Chain X, Crystal Structure Of Tm1086
pdb|3N99|AA Chain a, Crystal Structure Of Tm1086
pdb|3N99|BB Chain b, Crystal Structure Of Tm1086
pdb|3N99|CC Chain c, Crystal Structure Of Tm1086
pdb|3N99|DD Chain d, Crystal Structure Of Tm1086
pdb|3N99|EE Chain e, Crystal Structure Of Tm1086
pdb|3N99|GG Chain g, Crystal Structure Of Tm1086
pdb|3N99|HH Chain h, Crystal Structure Of Tm1086
pdb|3N99|II Chain i, Crystal Structure Of Tm1086
pdb|3N99|JJ Chain j, Crystal Structure Of Tm1086
pdb|3N99|KK Chain k, Crystal Structure Of Tm1086
Length = 290
Score = 33.5 bits (75), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGKIDKILLKSWAPQ 74
N VI S G + F + K + V+ K M G DKIL+K+W
Sbjct: 94 NEVIVMS-GDAKGSRGFVTGKHGGVNHVLVHFEEEVLGKL----MVG--DKILIKAWGQG 146
Query: 75 RDILDHPNVKVF 86
+LDHP+VKV
Sbjct: 147 LKLLDHPDVKVM 158
>pdb|1RRV|A Chain A, X-Ray Crystal Structure Of Tdp-Vancosaminyltransferase
Gtfd As A Complex With Tdp And The Natural Substrate,
Desvancosaminyl Vancomycin.
pdb|1RRV|B Chain B, X-Ray Crystal Structure Of Tdp-Vancosaminyltransferase
Gtfd As A Complex With Tdp And The Natural Substrate,
Desvancosaminyl Vancomycin
Length = 416
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Query: 82 NVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVL 141
V I HG A +GVP + IP DQ V G GV T E++
Sbjct: 302 RVAAVIHHGSAGTEHVATRAGVPQLVIPRNTDQPYFAGRVAALGIGVAHDGPTPTFESLS 361
Query: 142 VALRTVLGNPSYKKRAEKVA 161
AL TVL P + RAE VA
Sbjct: 362 AALTTVLA-PETRARAEAVA 380
>pdb|3DCL|A Chain A, Crystal Structure Of Tm1086
pdb|3DCL|B Chain B, Crystal Structure Of Tm1086
pdb|3DCL|C Chain C, Crystal Structure Of Tm1086
pdb|3DCL|D Chain D, Crystal Structure Of Tm1086
pdb|3DCL|E Chain E, Crystal Structure Of Tm1086
Length = 284
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 37 KAFLRAFEQIPQRVIWKWEGENMSGKI---DKILLKSWAPQRDILDHPNVKV 85
+ F+ V+ +E E + GK+ DKIL+K+W +LDHP+VKV
Sbjct: 101 RGFVTGKHGGVNHVLVHFE-EEVLGKLXVGDKILIKAWGQGLKLLDHPDVKV 151
>pdb|1IIR|A Chain A, Crystal Structure Of Udp-Glucosyltransferase Gtfb
Length = 415
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 83 VKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLV 142
V I HGG T A +G P I +P DQ V + G GV T +++
Sbjct: 302 VAAVIHHGGAGTTHVAARAGAPQILLPQMADQPYYAGRVAELGVGVAHDGPIPTFDSLSA 361
Query: 143 ALRTVLGNPSYKKRAEKVA 161
AL T L P RA VA
Sbjct: 362 ALATAL-TPETHARATAVA 379
>pdb|4AMG|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMG|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|C Chain C, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AN4|D Chain D, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 7/109 (6%)
Query: 71 WAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTL 130
W P +L+ I HGG AL +GVP IP Q N V+ G G
Sbjct: 295 WIPLGALLE--TCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLGIGFDA 352
Query: 131 PYDQITEETVLVALRTVLGNPSYKKRAEKVARLFQDRPMPPLDTAIYWI 179
+ E R +L + ++ A +V + + P PP +TA +
Sbjct: 353 EAGSLGAEQC----RRLLDDAGLREAALRVRQEMSEMP-PPAETAAXLV 396
>pdb|4AMB|A Chain A, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
pdb|4AMB|B Chain B, Crystal Structure Of The Glycosyltransferase Snogd From
Streptomyces Nogalater
Length = 400
Score = 31.6 bits (70), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 43/109 (39%), Gaps = 7/109 (6%)
Query: 71 WAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTL 130
W P +L+ I HGG AL +GVP IP Q N V+ G G
Sbjct: 295 WIPLGALLE--TCDAIIHHGGSGTLLTALAAGVPQCVIPHGSYQDTNRDVLTGLGIGFDA 352
Query: 131 PYDQITEETVLVALRTVLGNPSYKKRAEKVARLFQDRPMPPLDTAIYWI 179
+ E R +L + ++ A +V + + P PP +TA +
Sbjct: 353 EAGSLGAEQC----RRLLDDAGLREAALRVRQEMSEMP-PPAETAAKLV 396
>pdb|1V29|B Chain B, Crystal Structure Of Nitrile Hydratase From A Thermophile
Bacillus Smithii
Length = 229
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 41 RAFEQIPQRVIWKWEGENMSGKIDKILLKSWAPQRDILDHPNVKV 85
+AF + P I +WE + ++K LL+ +P R++ P +V
Sbjct: 100 QAFMEKPDTKIQRWENPKLVKVVEKALLEGLSPVREVSSFPRFEV 144
>pdb|4GW3|A Chain A, Crystal Structure Of The Lipase From Proteus Mirabilis
pdb|4GXN|A Chain A, Diethylphosphonate Inhibited Structure Of The Proteus
Mirabilis Lipase
Length = 307
Score = 27.3 bits (59), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/18 (66%), Positives = 13/18 (72%)
Query: 11 DESVNGVIYFSMGSIIQG 28
DE VNGV Y+ GS IQG
Sbjct: 205 DEIVNGVHYYCFGSYIQG 222
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,413,032
Number of Sequences: 62578
Number of extensions: 303179
Number of successful extensions: 744
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 716
Number of HSP's gapped (non-prelim): 30
length of query: 244
length of database: 14,973,337
effective HSP length: 96
effective length of query: 148
effective length of database: 8,965,849
effective search space: 1326945652
effective search space used: 1326945652
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)