Query psy16503
Match_columns 244
No_of_seqs 211 out of 2224
Neff 8.6
Searched_HMMs 46136
Date Fri Aug 16 22:57:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy16503.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/16503hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00201 UDPGT: UDP-glucoronos 100.0 6.9E-60 1.5E-64 434.8 14.8 232 3-236 263-495 (500)
2 PHA03392 egt ecdysteroid UDP-g 100.0 1.5E-53 3.4E-58 391.3 27.5 211 3-213 284-496 (507)
3 KOG1192|consensus 100.0 3.5E-40 7.7E-45 303.3 24.2 207 3-211 265-481 (496)
4 PLN02670 transferase, transfer 100.0 2.8E-34 6E-39 260.9 21.1 177 4-185 266-466 (472)
5 PLN02554 UDP-glycosyltransfera 100.0 2.3E-33 5E-38 256.9 19.3 180 3-185 261-479 (481)
6 PLN02207 UDP-glycosyltransfera 100.0 1.3E-32 2.8E-37 249.7 20.4 160 4-166 263-444 (468)
7 PLN03004 UDP-glycosyltransfera 100.0 8.4E-33 1.8E-37 250.1 18.7 160 4-166 258-440 (451)
8 PLN02208 glycosyltransferase f 100.0 1.7E-31 3.7E-36 241.6 20.8 176 3-182 238-437 (442)
9 PLN02562 UDP-glycosyltransfera 100.0 1.6E-31 3.4E-36 242.6 20.5 158 6-167 263-430 (448)
10 PLN02410 UDP-glucoronosyl/UDP- 100.0 3.4E-31 7.3E-36 240.2 20.6 158 5-166 253-429 (451)
11 PLN02152 indole-3-acetate beta 100.0 3.8E-31 8.3E-36 239.6 20.3 160 4-166 249-435 (455)
12 PLN02992 coniferyl-alcohol glu 100.0 4.8E-31 1E-35 240.0 20.8 159 4-165 251-445 (481)
13 PLN03007 UDP-glucosyltransfera 100.0 1E-30 2.2E-35 239.6 20.3 161 3-166 272-459 (482)
14 PLN02555 limonoid glucosyltran 100.0 2.1E-30 4.6E-35 236.2 20.9 179 4-185 265-470 (480)
15 PLN02167 UDP-glycosyltransfera 100.0 1.3E-30 2.8E-35 238.4 19.2 160 4-166 268-451 (475)
16 PLN02863 UDP-glucoronosyl/UDP- 100.0 4.7E-30 1E-34 234.2 20.4 179 4-185 271-472 (477)
17 PLN02210 UDP-glucosyl transfer 100.0 2.5E-30 5.5E-35 235.1 18.6 159 5-166 258-434 (456)
18 PLN00164 glucosyltransferase; 100.0 8.4E-30 1.8E-34 233.0 20.4 160 4-166 260-452 (480)
19 PLN02764 glycosyltransferase f 100.0 7.8E-30 1.7E-34 230.4 19.7 178 4-185 245-446 (453)
20 PLN02448 UDP-glycosyltransfera 100.0 6.7E-30 1.5E-34 233.0 19.5 160 4-166 262-436 (459)
21 PLN03015 UDP-glucosyl transfer 100.0 6.2E-30 1.3E-34 231.8 18.1 160 4-166 255-447 (470)
22 PLN02173 UDP-glucosyl transfer 100.0 3.1E-29 6.8E-34 226.8 20.8 156 5-165 253-426 (449)
23 PLN00414 glycosyltransferase f 100.0 2.9E-29 6.2E-34 227.3 18.9 179 4-186 240-442 (446)
24 COG1819 Glycosyl transferases, 100.0 6.2E-29 1.3E-33 223.1 19.4 167 13-187 235-403 (406)
25 PLN02534 UDP-glycosyltransfera 100.0 2.6E-27 5.7E-32 216.3 19.9 176 5-183 272-485 (491)
26 cd03784 GT1_Gtf_like This fami 100.0 6.5E-27 1.4E-31 209.8 19.3 171 3-181 228-400 (401)
27 TIGR01426 MGT glycosyltransfer 100.0 6.8E-27 1.5E-31 209.4 18.9 170 8-184 217-391 (392)
28 PRK12446 undecaprenyldiphospho 99.7 1.5E-16 3.2E-21 140.9 16.9 154 14-180 184-350 (352)
29 COG0707 MurG UDP-N-acetylgluco 99.7 2.3E-16 5.1E-21 139.1 17.8 162 14-183 182-355 (357)
30 PF04101 Glyco_tran_28_C: Glyc 99.7 6.7E-19 1.5E-23 139.8 0.7 136 17-159 1-153 (167)
31 PF13528 Glyco_trans_1_3: Glyc 99.7 2.7E-16 5.9E-21 136.8 13.1 122 14-147 191-317 (318)
32 TIGR00661 MJ1255 conserved hyp 99.7 5.1E-16 1.1E-20 135.8 13.2 126 15-154 188-318 (321)
33 PRK00726 murG undecaprenyldiph 99.6 2.9E-14 6.2E-19 126.0 16.7 160 15-184 183-356 (357)
34 cd03785 GT1_MurG MurG is an N- 99.4 3.5E-12 7.7E-17 112.0 14.6 153 15-176 181-348 (350)
35 PRK13608 diacylglycerol glucos 99.4 2.1E-11 4.5E-16 109.5 19.0 157 15-184 202-370 (391)
36 PRK13609 diacylglycerol glucos 99.4 3.7E-11 8E-16 107.2 17.6 156 15-183 202-369 (380)
37 PLN02605 monogalactosyldiacylg 99.3 2.3E-10 5E-15 102.4 18.0 159 15-182 206-378 (382)
38 TIGR01133 murG undecaprenyldip 99.3 3E-11 6.5E-16 106.0 12.1 101 73-177 243-346 (348)
39 COG4671 Predicted glycosyl tra 99.1 6.2E-10 1.3E-14 95.9 11.7 133 14-152 218-367 (400)
40 TIGR03590 PseG pseudaminic aci 99.1 1.8E-10 4E-15 98.9 8.5 97 16-120 171-278 (279)
41 TIGR03492 conserved hypothetic 99.0 7.6E-09 1.6E-13 93.1 14.4 156 15-181 205-394 (396)
42 KOG3349|consensus 99.0 1.8E-09 3.8E-14 82.3 8.1 117 16-134 4-136 (170)
43 COG3980 spsG Spore coat polysa 98.9 2E-08 4.4E-13 84.2 11.2 144 15-166 158-309 (318)
44 PRK00025 lpxB lipid-A-disaccha 98.8 5.3E-08 1.2E-12 86.7 12.8 163 15-184 186-376 (380)
45 TIGR00215 lpxB lipid-A-disacch 98.8 3.2E-08 7E-13 88.8 10.8 158 15-179 191-382 (385)
46 cd03814 GT1_like_2 This family 98.7 7.4E-07 1.6E-11 77.4 15.2 137 16-165 197-347 (364)
47 COG5017 Uncharacterized conser 98.6 1.2E-06 2.6E-11 65.8 11.5 128 18-148 2-140 (161)
48 PF00534 Glycos_transf_1: Glyc 98.6 7.8E-07 1.7E-11 70.1 10.3 146 5-163 4-171 (172)
49 PRK05749 3-deoxy-D-manno-octul 98.5 9.9E-06 2.2E-10 73.4 18.4 113 65-183 303-421 (425)
50 cd03795 GT1_like_4 This family 98.5 2.7E-06 5.8E-11 74.2 14.0 138 15-165 190-347 (357)
51 cd03823 GT1_ExpE7_like This fa 98.5 4.8E-06 1E-10 72.0 14.6 138 15-165 190-344 (359)
52 cd03800 GT1_Sucrose_synthase T 98.5 4.7E-06 1E-10 73.9 14.5 137 15-164 219-382 (398)
53 cd03801 GT1_YqgM_like This fam 98.4 1.3E-05 2.9E-10 68.7 16.1 134 15-162 198-353 (374)
54 cd03786 GT1_UDP-GlcNAc_2-Epime 98.4 2.1E-06 4.6E-11 75.7 11.0 132 15-158 198-345 (363)
55 TIGR00236 wecB UDP-N-acetylglu 98.4 9E-06 2E-10 72.2 14.8 150 15-180 197-362 (365)
56 cd04962 GT1_like_5 This family 98.4 2.6E-05 5.7E-10 68.5 17.6 157 15-180 196-366 (371)
57 cd03794 GT1_wbuB_like This fam 98.4 9E-06 1.9E-10 70.7 13.9 141 15-166 219-381 (394)
58 cd05844 GT1_like_7 Glycosyltra 98.4 1.2E-05 2.6E-10 70.6 13.8 95 62-164 243-350 (367)
59 cd03821 GT1_Bme6_like This fam 98.3 3.1E-05 6.7E-10 67.0 15.6 93 62-164 260-359 (375)
60 PRK15484 lipopolysaccharide 1, 98.3 8.7E-05 1.9E-09 66.4 18.9 92 62-162 255-355 (380)
61 cd03804 GT1_wbaZ_like This fam 98.3 4.9E-06 1.1E-10 73.1 10.6 135 17-164 196-341 (351)
62 cd03820 GT1_amsD_like This fam 98.3 1.4E-05 3.1E-10 68.2 13.2 96 62-165 233-334 (348)
63 PF13844 Glyco_transf_41: Glyc 98.3 2.4E-05 5.2E-10 71.3 14.5 166 13-184 282-465 (468)
64 cd03808 GT1_cap1E_like This fa 98.3 2E-05 4.2E-10 67.7 13.3 140 15-164 187-343 (359)
65 cd04946 GT1_AmsK_like This fam 98.2 6.1E-05 1.3E-09 68.1 16.2 145 15-165 229-392 (407)
66 PLN02871 UDP-sulfoquinovose:DA 98.2 4E-05 8.6E-10 70.4 14.9 138 15-165 262-415 (465)
67 cd03822 GT1_ecORF704_like This 98.2 0.0001 2.2E-09 64.0 16.8 107 62-178 245-361 (366)
68 cd03798 GT1_wlbH_like This fam 98.2 6.6E-05 1.4E-09 64.7 15.5 84 62-153 257-347 (377)
69 cd03807 GT1_WbnK_like This fam 98.2 4.8E-05 1E-09 65.5 14.2 135 15-164 192-346 (365)
70 TIGR03449 mycothiol_MshA UDP-N 98.2 0.00026 5.7E-09 63.4 19.1 96 62-165 281-383 (405)
71 cd03817 GT1_UGDG_like This fam 98.2 7.8E-05 1.7E-09 64.6 15.1 96 61-165 256-358 (374)
72 PRK15427 colanic acid biosynth 98.2 0.00015 3.3E-09 65.6 17.0 102 62-171 277-392 (406)
73 cd03825 GT1_wcfI_like This fam 98.1 0.00018 4E-09 62.7 16.7 96 62-165 242-345 (365)
74 TIGR03088 stp2 sugar transfera 98.1 0.00013 2.9E-09 64.5 15.2 152 15-175 193-363 (374)
75 COG1519 KdtA 3-deoxy-D-manno-o 98.1 8.8E-05 1.9E-09 66.1 13.7 154 16-179 231-415 (419)
76 cd04951 GT1_WbdM_like This fam 98.1 7.1E-05 1.5E-09 65.2 12.9 136 14-160 186-337 (360)
77 cd03818 GT1_ExpC_like This fam 98.1 0.00011 2.5E-09 65.8 14.4 95 63-165 280-381 (396)
78 cd03799 GT1_amsK_like This is 98.1 0.00014 2.9E-09 63.3 14.5 95 62-164 234-341 (355)
79 TIGR02149 glgA_Coryne glycogen 98.0 0.00041 8.9E-09 61.5 17.1 153 15-178 200-380 (388)
80 cd03809 GT1_mtfB_like This fam 98.0 0.00015 3.3E-09 62.9 12.9 94 61-166 250-352 (365)
81 PRK14089 ipid-A-disaccharide s 98.0 2.4E-05 5.2E-10 69.2 7.5 154 15-180 167-345 (347)
82 PRK10307 putative glycosyl tra 98.0 0.00076 1.6E-08 60.7 17.3 142 15-170 228-393 (412)
83 cd04949 GT1_gtfA_like This fam 98.0 0.00019 4.1E-09 63.4 13.0 142 15-164 203-359 (372)
84 cd03792 GT1_Trehalose_phosphor 97.9 0.0013 2.9E-08 58.3 18.1 155 15-180 189-367 (372)
85 cd03811 GT1_WabH_like This fam 97.9 0.00022 4.7E-09 60.9 12.5 131 15-159 188-341 (353)
86 cd03805 GT1_ALG2_like This fam 97.9 0.00052 1.1E-08 61.0 15.3 94 62-164 278-378 (392)
87 TIGR02472 sucr_P_syn_N sucrose 97.9 0.00056 1.2E-08 62.4 15.3 97 62-164 315-420 (439)
88 cd03813 GT1_like_3 This family 97.9 0.00082 1.8E-08 62.0 16.4 141 15-164 292-456 (475)
89 cd03812 GT1_CapH_like This fam 97.9 0.00027 5.8E-09 61.7 12.3 139 14-163 190-344 (358)
90 cd03819 GT1_WavL_like This fam 97.8 0.0014 3E-08 57.1 16.5 96 62-165 244-346 (355)
91 cd03816 GT1_ALG1_like This fam 97.8 0.00046 1E-08 62.5 13.7 93 64-166 294-400 (415)
92 PF02350 Epimerase_2: UDP-N-ac 97.8 4E-05 8.7E-10 67.9 6.5 158 8-179 173-345 (346)
93 TIGR03087 stp1 sugar transfera 97.8 0.0006 1.3E-08 61.2 14.0 110 63-183 279-394 (397)
94 PRK09922 UDP-D-galactose:(gluc 97.8 0.00059 1.3E-08 60.4 13.8 138 16-164 180-340 (359)
95 TIGR02918 accessory Sec system 97.7 0.0038 8.3E-08 58.1 17.1 158 16-181 319-496 (500)
96 cd04955 GT1_like_6 This family 97.6 0.0012 2.5E-08 57.6 12.3 130 18-165 195-345 (363)
97 TIGR03568 NeuC_NnaA UDP-N-acet 97.5 0.0023 5E-08 57.1 13.2 128 15-156 201-344 (365)
98 PRK15179 Vi polysaccharide bio 97.5 0.0029 6.2E-08 61.0 14.5 139 16-161 517-674 (694)
99 TIGR02468 sucrsPsyn_pln sucros 97.5 0.0048 1E-07 61.5 15.5 166 5-183 469-669 (1050)
100 cd03796 GT1_PIG-A_like This fa 97.4 0.008 1.7E-07 53.9 15.7 126 15-151 192-334 (398)
101 cd03802 GT1_AviGT4_like This f 97.3 0.0059 1.3E-07 52.6 12.5 122 15-151 170-309 (335)
102 PRK09814 beta-1,6-galactofuran 97.3 0.0034 7.3E-08 55.2 10.9 98 61-166 204-318 (333)
103 PF04007 DUF354: Protein of un 97.2 0.012 2.7E-07 51.8 13.5 161 6-183 170-334 (335)
104 PHA01633 putative glycosyl tra 97.1 0.0098 2.1E-07 52.5 12.3 86 61-150 198-307 (335)
105 COG3914 Spy Predicted O-linked 97.1 0.027 5.9E-07 52.3 15.1 127 12-145 426-573 (620)
106 PHA01630 putative group 1 glyc 97.1 0.034 7.3E-07 49.0 15.3 105 72-183 198-328 (331)
107 PLN02275 transferase, transfer 97.1 0.007 1.5E-07 53.9 11.1 75 64-148 286-371 (371)
108 PF13524 Glyco_trans_1_2: Glyc 97.0 0.0074 1.6E-07 42.4 8.2 82 89-179 9-91 (92)
109 KOG4626|consensus 96.9 0.0092 2E-07 55.8 10.6 139 14-159 757-913 (966)
110 cd03791 GT1_Glycogen_synthase_ 96.9 0.017 3.6E-07 53.1 12.5 129 15-149 295-441 (476)
111 PF13692 Glyco_trans_1_4: Glyc 96.9 0.0031 6.8E-08 47.3 6.0 78 63-150 52-135 (135)
112 COG0381 WecB UDP-N-acetylgluco 96.8 0.034 7.5E-07 49.4 13.0 159 10-184 199-373 (383)
113 PRK10125 putative glycosyl tra 96.7 0.05 1.1E-06 49.2 13.9 99 36-144 258-365 (405)
114 PRK15490 Vi polysaccharide bio 96.7 0.056 1.2E-06 50.7 13.9 119 16-144 398-532 (578)
115 cd04950 GT1_like_1 Glycosyltra 96.6 0.13 2.8E-06 45.8 15.6 119 16-151 205-341 (373)
116 cd03806 GT1_ALG11_like This fa 96.6 0.063 1.4E-06 48.8 13.7 88 62-158 303-401 (419)
117 TIGR02470 sucr_synth sucrose s 96.6 0.16 3.4E-06 49.7 16.6 95 63-163 618-726 (784)
118 TIGR02095 glgA glycogen/starch 96.6 0.11 2.4E-06 47.8 15.2 138 15-161 290-452 (473)
119 PLN00142 sucrose synthase 96.4 0.22 4.7E-06 48.9 16.3 96 63-164 641-750 (815)
120 TIGR03713 acc_sec_asp1 accesso 96.3 0.082 1.8E-06 49.5 12.6 101 64-178 409-515 (519)
121 PLN02949 transferase, transfer 96.2 0.039 8.5E-07 50.9 10.0 108 62-180 333-452 (463)
122 PRK00654 glgA glycogen synthas 96.0 0.23 5.1E-06 45.7 14.1 125 15-149 281-427 (466)
123 PRK14098 glycogen synthase; Pr 96.0 0.22 4.8E-06 46.2 13.9 135 15-157 306-461 (489)
124 TIGR02193 heptsyl_trn_I lipopo 95.9 0.069 1.5E-06 46.4 9.6 133 7-148 170-319 (319)
125 PF02684 LpxB: Lipid-A-disacch 95.2 0.2 4.4E-06 44.8 10.0 146 14-165 183-355 (373)
126 PRK10017 colanic acid biosynth 95.1 0.25 5.5E-06 45.1 10.7 85 76-166 323-409 (426)
127 TIGR02919 accessory Sec system 95.1 0.57 1.2E-05 42.9 12.9 125 33-166 291-427 (438)
128 PRK01021 lpxB lipid-A-disaccha 95.1 0.62 1.3E-05 44.2 13.1 140 14-160 412-581 (608)
129 PRK14099 glycogen synthase; Pr 94.8 1.1 2.5E-05 41.5 14.2 97 63-161 349-458 (485)
130 PF06258 Mito_fiss_Elm1: Mitoc 94.6 0.83 1.8E-05 39.9 12.1 122 8-132 139-282 (311)
131 PLN02501 digalactosyldiacylgly 94.6 0.42 9.2E-06 46.1 10.7 80 65-155 602-686 (794)
132 PLN02846 digalactosyldiacylgly 94.5 2.2 4.8E-05 39.4 15.1 73 68-151 288-364 (462)
133 PF04464 Glyphos_transf: CDP-G 94.3 0.42 9.1E-06 42.4 9.9 132 42-180 224-368 (369)
134 cd01635 Glycosyltransferase_GT 94.2 0.27 5.9E-06 39.2 7.9 51 61-112 158-215 (229)
135 PLN02939 transferase, transfer 94.1 4.1 9E-05 40.9 16.7 93 63-159 836-944 (977)
136 PF06722 DUF1205: Protein of u 93.2 0.077 1.7E-06 38.1 2.5 62 6-67 30-97 (97)
137 PF05159 Capsule_synth: Capsul 93.0 1 2.2E-05 38.2 9.7 92 14-108 116-224 (269)
138 cd03788 GT1_TPS Trehalose-6-Ph 93.0 6.3 0.00014 36.3 15.4 73 68-151 345-428 (460)
139 COG0763 LpxB Lipid A disacchar 93.0 0.64 1.4E-05 41.5 8.4 161 13-182 186-378 (381)
140 PLN02316 synthase/transferase 92.7 8 0.00017 39.3 16.4 97 63-163 899-1012(1036)
141 PRK10964 ADP-heptose:LPS hepto 92.5 1 2.2E-05 39.2 9.1 128 15-149 178-321 (322)
142 COG3660 Predicted nucleoside-d 92.4 3.4 7.5E-05 35.2 11.5 116 15-132 161-299 (329)
143 COG4370 Uncharacterized protei 91.9 2.2 4.7E-05 37.1 9.9 98 69-168 282-397 (412)
144 TIGR02400 trehalose_OtsA alpha 91.5 12 0.00025 34.6 17.7 98 69-183 341-451 (456)
145 COG0438 RfaG Glycosyltransfera 91.4 3.7 8E-05 34.1 11.2 89 63-159 256-351 (381)
146 PRK10422 lipopolysaccharide co 90.4 3.7 8E-05 36.2 10.6 91 15-108 183-287 (352)
147 PRK02155 ppnK NAD(+)/NADH kina 90.3 3 6.5E-05 36.1 9.6 96 33-150 20-119 (291)
148 cd03789 GT1_LPS_heptosyltransf 90.1 1.4 2.9E-05 37.5 7.4 91 15-108 121-223 (279)
149 PF01075 Glyco_transf_9: Glyco 89.8 0.73 1.6E-05 38.3 5.4 92 14-108 104-208 (247)
150 TIGR00730 conserved hypothetic 89.3 6.6 0.00014 31.4 10.3 104 15-126 31-153 (178)
151 TIGR02201 heptsyl_trn_III lipo 88.9 6.5 0.00014 34.5 11.0 92 14-108 180-285 (344)
152 COG0859 RfaF ADP-heptose:LPS h 88.5 1.7 3.7E-05 38.2 7.0 91 15-108 175-276 (334)
153 PF07429 Glyco_transf_56: 4-al 87.9 7.9 0.00017 34.3 10.4 128 15-149 183-332 (360)
154 PRK14077 pnk inorganic polypho 87.9 4.9 0.00011 34.7 9.2 94 33-151 24-121 (287)
155 TIGR02398 gluc_glyc_Psyn gluco 87.7 23 0.0005 33.0 14.0 154 15-184 284-478 (487)
156 TIGR00725 conserved hypothetic 87.6 7.8 0.00017 30.3 9.5 94 6-110 23-123 (159)
157 PRK14501 putative bifunctional 87.3 8.3 0.00018 37.7 11.5 95 66-165 344-445 (726)
158 KOG0853|consensus 87.1 0.49 1.1E-05 43.8 2.7 65 93-161 380-444 (495)
159 cd03793 GT1_Glycogen_synthase_ 87.1 4.6 9.9E-05 38.3 9.1 81 74-158 468-559 (590)
160 PRK04885 ppnK inorganic polyph 86.4 1.6 3.4E-05 37.3 5.3 53 82-150 35-93 (265)
161 TIGR02195 heptsyl_trn_II lipop 86.3 6.4 0.00014 34.3 9.3 91 15-108 174-276 (334)
162 PRK10916 ADP-heptose:LPS hepto 86.1 7.9 0.00017 34.0 9.8 92 14-108 179-286 (348)
163 PRK02649 ppnK inorganic polyph 84.2 2.4 5.2E-05 37.0 5.5 101 33-151 16-125 (305)
164 PRK03372 ppnK inorganic polyph 83.8 9.8 0.00021 33.2 9.1 101 33-151 20-129 (306)
165 PRK01231 ppnK inorganic polyph 83.1 12 0.00025 32.5 9.3 95 33-150 19-118 (295)
166 PRK03378 ppnK inorganic polyph 82.4 12 0.00027 32.3 9.2 96 33-150 20-119 (292)
167 COG1817 Uncharacterized protei 81.1 17 0.00036 31.9 9.2 154 15-185 182-342 (346)
168 PRK01911 ppnK inorganic polyph 80.8 3.8 8.3E-05 35.5 5.4 99 33-151 15-121 (292)
169 PRK04539 ppnK inorganic polyph 78.7 3.9 8.5E-05 35.5 4.8 98 33-151 20-125 (296)
170 PRK02231 ppnK inorganic polyph 78.0 4.9 0.00011 34.5 5.1 57 81-153 41-101 (272)
171 PF15050 SCIMP: SCIMP protein 77.6 6.7 0.00014 29.0 4.9 28 198-225 1-28 (133)
172 PRK01185 ppnK inorganic polyph 77.6 5.4 0.00012 34.2 5.3 53 82-150 52-105 (271)
173 PRK03501 ppnK inorganic polyph 77.0 5.8 0.00013 33.8 5.3 56 81-151 38-98 (264)
174 PRK14075 pnk inorganic polypho 76.8 6.7 0.00014 33.2 5.6 83 32-150 11-94 (256)
175 PRK12446 undecaprenyldiphospho 75.4 25 0.00053 31.2 9.1 32 77-108 86-120 (352)
176 PLN03063 alpha,alpha-trehalose 75.2 13 0.00028 36.9 7.9 87 71-166 363-461 (797)
177 PRK02797 4-alpha-L-fucosyltran 75.0 35 0.00075 29.9 9.5 75 64-147 206-291 (322)
178 COG1105 FruK Fructose-1-phosph 72.5 11 0.00024 32.9 6.0 55 1-57 111-169 (310)
179 PRK14076 pnk inorganic polypho 71.8 8.3 0.00018 36.7 5.5 54 82-151 348-405 (569)
180 PRK03708 ppnK inorganic polyph 71.8 7.4 0.00016 33.4 4.7 94 33-150 15-112 (277)
181 PLN02929 NADH kinase 71.1 11 0.00023 32.9 5.5 67 81-151 63-138 (301)
182 PLN02935 Bifunctional NADH kin 70.9 10 0.00022 35.4 5.6 55 81-151 261-319 (508)
183 cd03146 GAT1_Peptidase_E Type 70.5 49 0.0011 27.0 9.2 86 3-109 17-121 (212)
184 cd05005 SIS_PHI Hexulose-6-pho 69.6 45 0.00097 26.2 8.6 85 1-109 18-109 (179)
185 KOG4180|consensus 66.5 6.8 0.00015 34.3 3.3 28 81-108 104-135 (395)
186 PF00731 AIRC: AIR carboxylase 66.0 22 0.00047 27.6 5.8 135 17-165 2-147 (150)
187 PF10933 DUF2827: Protein of u 65.8 38 0.00082 30.2 7.9 95 66-174 255-356 (364)
188 PF06506 PrpR_N: Propionate ca 65.4 2.8 6E-05 33.3 0.8 33 79-112 31-63 (176)
189 COG3563 KpsC Capsule polysacch 65.1 1.2E+02 0.0027 28.4 11.1 155 33-209 166-338 (671)
190 PRK04761 ppnK inorganic polyph 64.2 18 0.0004 30.5 5.5 30 81-110 24-57 (246)
191 PLN03064 alpha,alpha-trehalose 62.7 1.5E+02 0.0034 30.1 12.3 89 70-165 446-544 (934)
192 PLN02727 NAD kinase 61.5 19 0.00041 36.2 5.7 55 81-151 742-800 (986)
193 PRK13240 pbsY photosystem II p 60.9 23 0.00051 20.9 3.9 35 208-242 5-39 (40)
194 COG0826 Collagenase and relate 60.6 1.2E+02 0.0027 26.9 12.4 127 15-147 27-159 (347)
195 TIGR00715 precor6x_red precorr 59.4 1.1E+02 0.0024 25.9 12.7 126 1-134 52-206 (256)
196 PRK03202 6-phosphofructokinase 56.0 1.4E+02 0.0031 26.2 12.3 143 1-148 52-238 (320)
197 cd08181 PPD-like 1,3-propanedi 53.6 40 0.00087 29.9 6.2 96 5-111 16-133 (357)
198 TIGR01470 cysG_Nterm siroheme 53.2 1.2E+02 0.0027 24.6 9.3 156 10-178 5-176 (205)
199 COG2327 WcaK Polysaccharide py 53.0 66 0.0014 29.1 7.3 86 64-156 266-357 (385)
200 PF02571 CbiJ: Precorrin-6x re 52.9 1.3E+02 0.0028 25.4 8.8 94 4-108 119-225 (249)
201 PF11395 DUF2873: Protein of u 51.5 46 0.001 19.2 4.3 9 206-214 7-15 (43)
202 TIGR02638 lactal_redase lactal 51.4 37 0.0008 30.4 5.6 34 77-111 81-139 (379)
203 PF01102 Glycophorin_A: Glycop 51.2 25 0.00055 26.3 3.7 11 227-237 84-94 (122)
204 PF11628 TCR_zetazeta: T-cell 50.3 38 0.00082 19.0 3.4 20 203-222 5-24 (33)
205 COG2011 AbcD ABC-type metal io 49.0 28 0.00061 28.6 3.9 35 201-235 186-220 (222)
206 TIGR03127 RuMP_HxlB 6-phospho 48.4 1.3E+02 0.0028 23.4 8.3 85 1-109 15-106 (179)
207 PLN02470 acetolactate synthase 47.8 68 0.0015 30.5 7.1 88 21-109 2-109 (585)
208 PRK00561 ppnK inorganic polyph 47.0 47 0.001 28.3 5.2 30 81-110 32-65 (259)
209 PF00558 Vpu: Vpu protein; In 47.0 30 0.00065 23.9 3.3 20 205-224 3-22 (81)
210 PF13941 MutL: MutL protein 46.9 2.4E+02 0.0052 26.2 10.8 89 84-173 250-342 (457)
211 TIGR03852 sucrose_gtfA sucrose 46.1 2.5E+02 0.0055 26.1 10.4 134 2-147 265-407 (470)
212 COG1611 Predicted Rossmann fol 46.0 62 0.0013 26.4 5.7 20 81-100 109-129 (205)
213 cd07038 TPP_PYR_PDC_IPDC_like 45.9 41 0.00088 26.2 4.4 19 92-110 75-93 (162)
214 PF02009 Rifin_STEVOR: Rifin/s 44.9 24 0.00053 30.7 3.2 8 36-43 37-44 (299)
215 PF03641 Lysine_decarbox: Poss 44.3 1E+02 0.0022 23.1 6.3 60 66-126 37-111 (133)
216 TIGR03609 S_layer_CsaB polysac 44.1 1.6E+02 0.0035 25.0 8.3 45 76-126 246-290 (298)
217 COG0801 FolK 7,8-dihydro-6-hyd 44.1 50 0.0011 26.0 4.5 36 16-54 2-37 (160)
218 PF11190 DUF2976: Protein of u 43.3 69 0.0015 22.4 4.7 46 195-242 13-58 (87)
219 COG2099 CobK Precorrin-6x redu 43.2 1.8E+02 0.004 24.7 8.0 81 15-108 128-228 (257)
220 PRK06270 homoserine dehydrogen 42.8 69 0.0015 28.3 5.9 58 73-130 80-149 (341)
221 PF06180 CbiK: Cobalt chelatas 41.9 43 0.00092 28.6 4.2 40 15-56 1-42 (262)
222 PRK13278 purP 5-formaminoimida 41.6 1.5E+02 0.0033 26.5 7.8 117 2-128 3-138 (358)
223 PF10661 EssA: WXG100 protein 41.6 43 0.00093 25.8 3.8 24 208-231 121-144 (145)
224 PF06679 DUF1180: Protein of u 41.5 38 0.00083 26.7 3.6 8 221-228 108-115 (163)
225 PF09547 Spore_IV_A: Stage IV 41.1 1.2E+02 0.0027 28.0 7.1 87 63-149 114-234 (492)
226 PF05693 Glycogen_syn: Glycoge 41.1 34 0.00073 32.8 3.7 88 72-163 461-565 (633)
227 TIGR00732 dprA DNA protecting 40.9 66 0.0014 26.5 5.1 39 92-130 171-211 (220)
228 cd07035 TPP_PYR_POX_like Pyrim 40.9 1.1E+02 0.0023 23.2 6.1 29 82-110 59-93 (155)
229 TIGR00315 cdhB CO dehydrogenas 39.8 64 0.0014 25.4 4.6 48 1-54 15-62 (162)
230 PRK10892 D-arabinose 5-phospha 39.5 2.5E+02 0.0054 24.2 8.9 82 9-109 42-128 (326)
231 PRK10586 putative oxidoreducta 39.1 1.6E+02 0.0035 26.3 7.6 31 81-111 85-119 (362)
232 PRK02645 ppnK inorganic polyph 38.5 35 0.00076 29.7 3.3 68 33-110 18-89 (305)
233 PF11057 Cortexin: Cortexin of 38.2 55 0.0012 22.2 3.4 30 210-239 32-61 (81)
234 PLN02948 phosphoribosylaminoim 37.7 3.6E+02 0.0079 25.8 10.2 138 15-166 410-558 (577)
235 cd08191 HHD 6-hydroxyhexanoate 37.2 1.3E+02 0.0028 26.9 6.9 95 5-111 13-130 (386)
236 COG2159 Predicted metal-depend 37.2 2.1E+02 0.0045 24.7 7.9 58 33-91 143-201 (293)
237 cd03412 CbiK_N Anaerobic cobal 37.1 66 0.0014 24.0 4.2 38 15-55 1-40 (127)
238 PF15024 Glyco_transf_18: Glyc 37.0 1.3E+02 0.0028 28.6 6.8 86 61-151 319-431 (559)
239 PRK05282 (alpha)-aspartyl dipe 36.1 2.6E+02 0.0056 23.3 8.9 84 5-109 23-120 (233)
240 cd08171 GlyDH-like2 Glycerol d 35.6 1.3E+02 0.0029 26.4 6.6 93 6-111 14-111 (345)
241 PF05225 HTH_psq: helix-turn-h 35.4 75 0.0016 19.0 3.5 24 136-159 1-25 (45)
242 COG0391 Uncharacterized conser 35.3 3.2E+02 0.0068 24.2 9.6 113 16-148 191-305 (323)
243 cd02067 B12-binding B12 bindin 35.2 1.5E+02 0.0032 21.3 5.9 40 2-46 38-77 (119)
244 KOG0503|consensus 34.8 74 0.0016 28.3 4.6 41 1-42 264-304 (368)
245 PF11346 DUF3149: Protein of u 34.8 1E+02 0.0022 18.4 4.9 32 202-233 5-36 (42)
246 PF11338 DUF3140: Protein of u 34.7 53 0.0011 23.3 3.0 43 1-46 8-50 (92)
247 cd01451 vWA_Magnesium_chelatas 34.6 1.5E+02 0.0033 23.0 6.2 64 82-145 100-177 (178)
248 PF05478 Prominin: Prominin; 34.5 66 0.0014 32.0 4.9 20 109-128 316-335 (806)
249 COG0061 nadF NAD kinase [Coenz 34.4 69 0.0015 27.5 4.4 57 81-154 54-114 (281)
250 COG1737 RpiR Transcriptional r 34.2 2.9E+02 0.0064 23.5 8.5 89 2-110 116-212 (281)
251 TIGR00045 glycerate kinase. Th 34.1 1.4E+02 0.0031 26.8 6.5 57 70-130 273-341 (375)
252 cd08551 Fe-ADH iron-containing 34.1 1.7E+02 0.0036 26.0 7.0 96 5-111 13-131 (370)
253 PF02009 Rifin_STEVOR: Rifin/s 34.0 80 0.0017 27.5 4.7 8 139-146 176-183 (299)
254 PF03685 UPF0147: Uncharacteri 33.2 1.2E+02 0.0027 21.1 4.6 58 138-195 9-70 (85)
255 PRK13840 sucrose phosphorylase 33.1 4.2E+02 0.0091 24.9 11.1 130 4-145 270-415 (495)
256 PHA02849 putative transmembran 33.0 1E+02 0.0022 21.1 4.0 22 208-229 19-40 (82)
257 PF04277 OAD_gamma: Oxaloaceta 33.0 1.3E+02 0.0028 20.1 4.8 17 217-233 19-35 (79)
258 PRK13181 hisH imidazole glycer 32.7 2.1E+02 0.0046 22.8 6.9 28 17-53 2-29 (199)
259 cd07766 DHQ_Fe-ADH Dehydroquin 32.3 2.1E+02 0.0046 24.7 7.3 93 5-111 13-113 (332)
260 cd01424 MGS_CPS_II Methylglyox 31.7 1.9E+02 0.0041 20.5 6.8 30 17-52 2-31 (110)
261 PRK04330 hypothetical protein; 31.6 1.8E+02 0.004 20.3 5.6 57 139-195 13-73 (88)
262 PF07905 PucR: Purine cataboli 31.6 2.1E+02 0.0045 21.0 7.1 48 3-55 33-81 (123)
263 PRK14571 D-alanyl-alanine synt 31.5 3.3E+02 0.0071 23.2 8.4 37 18-54 3-39 (299)
264 TIGR02482 PFKA_ATP 6-phosphofr 31.5 54 0.0012 28.5 3.3 35 77-111 86-124 (301)
265 PRK11475 DNA-binding transcrip 31.4 2.1E+02 0.0046 23.1 6.7 52 101-153 67-118 (207)
266 PF02481 DNA_processg_A: DNA r 31.3 73 0.0016 26.1 3.9 40 90-130 169-210 (212)
267 COG0118 HisH Glutamine amidotr 31.2 1.2E+02 0.0025 24.9 4.9 77 16-110 3-82 (204)
268 PRK10342 glycerate kinase I; P 31.0 2.1E+02 0.0045 25.9 7.0 88 70-164 274-373 (381)
269 PF07069 PRRSV_2b: Porcine rep 30.8 1.5E+02 0.0032 19.2 4.3 29 205-233 26-56 (73)
270 TIGR00661 MJ1255 conserved hyp 30.7 53 0.0012 28.4 3.2 33 76-108 87-119 (321)
271 COG1983 PspC Putative stress-r 30.6 84 0.0018 21.0 3.3 13 199-211 20-32 (70)
272 PF05393 Hum_adeno_E3A: Human 30.3 85 0.0019 22.0 3.4 22 205-227 32-53 (94)
273 cd07037 TPP_PYR_MenD Pyrimidin 30.2 69 0.0015 25.0 3.4 29 82-110 60-94 (162)
274 TIGR02113 coaC_strep phosphopa 30.2 1.9E+02 0.004 23.0 6.0 29 101-129 111-146 (177)
275 COG5547 Small integral membran 30.1 1.5E+02 0.0033 19.0 4.3 18 198-215 1-18 (62)
276 PRK08322 acetolactate synthase 29.9 1.9E+02 0.0041 27.1 6.9 29 81-109 62-96 (547)
277 PF01102 Glycophorin_A: Glycop 29.9 77 0.0017 23.7 3.4 14 221-234 82-95 (122)
278 PRK15424 propionate catabolism 29.7 52 0.0011 31.1 3.1 34 78-112 60-93 (538)
279 COG1698 Uncharacterized protei 29.5 2E+02 0.0044 20.2 5.6 58 138-195 16-77 (93)
280 cd08188 Fe-ADH4 Iron-containin 29.5 1.6E+02 0.0034 26.3 6.1 95 5-111 18-136 (377)
281 smart00046 DAGKc Diacylglycero 29.4 55 0.0012 24.1 2.7 30 82-111 49-87 (124)
282 PF07219 HemY_N: HemY protein 29.4 1.1E+02 0.0024 21.9 4.2 22 210-231 20-41 (108)
283 COG3195 Uncharacterized protei 29.4 2.5E+02 0.0054 22.3 6.2 60 93-152 88-148 (176)
284 PF12689 Acid_PPase: Acid Phos 29.2 66 0.0014 25.5 3.2 47 100-146 119-165 (169)
285 PRK10017 colanic acid biosynth 29.1 3.5E+02 0.0075 24.8 8.3 30 81-110 116-156 (426)
286 COG0041 PurE Phosphoribosylcar 29.1 2.8E+02 0.0061 21.7 9.5 135 17-166 4-150 (162)
287 PRK13057 putative lipid kinase 29.0 59 0.0013 27.7 3.1 30 81-110 49-82 (287)
288 PRK14092 2-amino-4-hydroxy-6-h 28.5 1.1E+02 0.0024 24.1 4.3 31 15-48 7-37 (163)
289 PRK08155 acetolactate synthase 28.3 1.9E+02 0.0042 27.3 6.7 76 34-109 14-109 (564)
290 PRK00945 acetyl-CoA decarbonyl 28.2 1.3E+02 0.0028 23.9 4.6 133 1-149 22-169 (171)
291 PRK13059 putative lipid kinase 28.0 60 0.0013 27.9 3.0 30 81-110 55-90 (295)
292 PRK09932 glycerate kinase II; 28.0 2.4E+02 0.0053 25.5 6.9 73 70-147 274-358 (381)
293 cd08170 GlyDH Glycerol dehydro 27.9 1.7E+02 0.0037 25.7 6.0 92 5-111 13-110 (351)
294 PF10854 DUF2649: Protein of u 27.8 1.7E+02 0.0038 18.9 4.3 36 194-229 30-65 (67)
295 TIGR00147 lipid kinase, YegS/R 27.7 66 0.0014 27.4 3.2 68 33-110 18-91 (293)
296 PF02439 Adeno_E3_CR2: Adenovi 27.7 1.3E+02 0.0029 17.5 4.2 9 227-235 24-32 (38)
297 PRK09860 putative alcohol dehy 27.4 1.2E+02 0.0026 27.2 4.9 18 77-94 83-100 (383)
298 PF06024 DUF912: Nucleopolyhed 27.3 18 0.0004 26.0 -0.3 29 206-234 61-89 (101)
299 TIGR02329 propionate_PrpR prop 27.3 61 0.0013 30.6 3.1 34 78-112 50-83 (526)
300 KOG4433|consensus 27.2 4.5E+02 0.0099 24.6 8.4 25 195-219 199-223 (526)
301 TIGR02483 PFK_mixed phosphofru 27.0 71 0.0015 28.1 3.3 35 77-111 89-126 (324)
302 PRK13152 hisH imidazole glycer 26.9 2.4E+02 0.0052 22.6 6.2 27 17-52 2-28 (201)
303 cd08194 Fe-ADH6 Iron-containin 26.7 2.3E+02 0.0051 25.2 6.7 95 5-111 13-131 (375)
304 PF01513 NAD_kinase: ATP-NAD k 26.6 58 0.0013 27.9 2.7 30 81-110 75-108 (285)
305 COG3199 Predicted inorganic po 26.6 70 0.0015 28.4 3.1 42 81-122 99-151 (355)
306 PRK11543 gutQ D-arabinose 5-ph 26.2 3.6E+02 0.0077 23.1 7.6 77 15-110 43-124 (321)
307 cd08187 BDH Butanol dehydrogen 26.2 1.7E+02 0.0036 26.2 5.6 30 81-111 85-137 (382)
308 cd07039 TPP_PYR_POX Pyrimidine 26.1 89 0.0019 24.3 3.4 29 82-110 63-97 (164)
309 smart00096 UTG Uteroglobin. 26.1 2.1E+02 0.0045 19.1 5.8 50 136-185 17-66 (69)
310 cd01743 GATase1_Anthranilate_S 26.0 2.9E+02 0.0062 21.6 6.5 35 82-117 42-85 (184)
311 PRK06718 precorrin-2 dehydroge 25.9 3.5E+02 0.0077 21.8 9.3 162 9-184 5-181 (202)
312 cd03174 DRE_TIM_metallolyase D 25.8 3.8E+02 0.0082 22.1 8.6 119 23-148 8-156 (265)
313 cd00763 Bacterial_PFK Phosphof 25.8 76 0.0016 27.8 3.2 38 76-113 86-126 (317)
314 PF05568 ASFV_J13L: African sw 25.7 1.2E+02 0.0025 23.5 3.7 10 199-208 25-34 (189)
315 TIGR01358 DAHP_synth_II 3-deox 25.7 1.5E+02 0.0032 27.3 5.1 51 1-56 290-346 (443)
316 TIGR02836 spore_IV_A stage IV 25.5 2.9E+02 0.0064 25.6 6.9 74 76-149 139-234 (492)
317 PRK03202 6-phosphofructokinase 25.3 85 0.0019 27.6 3.5 34 78-111 89-125 (320)
318 COG1691 NCAIR mutase (PurE)-re 25.3 2.5E+02 0.0054 23.6 5.9 79 15-110 117-203 (254)
319 COG0133 TrpB Tryptophan syntha 25.3 2.1E+02 0.0047 25.4 5.7 44 138-182 26-69 (396)
320 PF11071 DUF2872: Protein of u 25.2 2E+02 0.0043 21.9 4.9 28 81-108 71-106 (141)
321 PF13478 XdhC_C: XdhC Rossmann 25.2 1.7E+02 0.0038 22.0 4.8 87 36-124 10-100 (136)
322 PLN00019 photosystem I reactio 25.1 2.9E+02 0.0064 22.8 6.2 57 171-233 113-171 (223)
323 PHA02657 hypothetical protein; 25.1 1.4E+02 0.003 20.8 3.7 24 206-229 27-50 (95)
324 PRK14116 gpmA phosphoglyceromu 25.0 48 0.001 27.3 1.8 24 82-105 175-198 (228)
325 PRK13463 phosphatase PhoE; Pro 25.0 53 0.0012 26.4 2.0 25 82-106 144-168 (203)
326 PF14350 Beta_protein: Beta pr 24.9 74 0.0016 28.0 3.1 46 104-149 99-147 (347)
327 PRK11914 diacylglycerol kinase 24.8 73 0.0016 27.4 3.0 30 81-110 63-96 (306)
328 cd07062 Peptidase_S66_mccF_lik 24.7 1.8E+02 0.0038 25.3 5.4 71 33-110 52-124 (308)
329 PRK13054 lipid kinase; Reviewe 24.4 85 0.0018 27.0 3.3 30 81-110 55-92 (300)
330 cd08185 Fe-ADH1 Iron-containin 24.4 2.9E+02 0.0063 24.6 6.9 78 5-92 16-93 (380)
331 PF12669 P12: Virus attachment 24.4 96 0.0021 19.8 2.7 8 228-235 18-25 (58)
332 cd01423 MGS_CPS_I_III Methylgl 24.4 1.8E+02 0.004 20.8 4.7 85 17-107 2-106 (116)
333 PRK15482 transcriptional regul 24.3 2.1E+02 0.0046 24.2 5.8 28 82-109 184-216 (285)
334 PRK11557 putative DNA-binding 24.2 4.2E+02 0.009 22.2 7.5 80 10-109 125-209 (278)
335 PRK09423 gldA glycerol dehydro 24.2 3.6E+02 0.0078 23.9 7.4 92 5-111 20-117 (366)
336 cd03785 GT1_MurG MurG is an N- 24.2 4.5E+02 0.0098 22.4 9.5 87 18-108 2-118 (350)
337 PF14851 FAM176: FAM176 family 24.0 1E+02 0.0022 24.0 3.3 23 209-231 25-47 (153)
338 PRK14119 gpmA phosphoglyceromu 24.0 56 0.0012 26.9 2.0 24 82-105 175-198 (228)
339 cd05126 Mth938 Mth938 domain. 23.9 2E+02 0.0044 21.1 4.8 45 1-51 46-90 (117)
340 KOG2678|consensus 23.8 4.3E+02 0.0093 22.0 7.8 16 151-166 165-180 (244)
341 COG1759 5-formaminoimidazole-4 23.7 3.2E+02 0.0068 24.3 6.5 116 2-128 3-139 (361)
342 TIGR03162 ribazole_cobC alpha- 23.7 55 0.0012 25.4 1.8 24 82-105 138-161 (177)
343 cd08193 HVD 5-hydroxyvalerate 23.5 3E+02 0.0065 24.5 6.8 95 5-111 16-134 (376)
344 PF05568 ASFV_J13L: African sw 23.5 2.3E+02 0.005 21.9 5.0 6 227-232 48-53 (189)
345 PF02038 ATP1G1_PLM_MAT8: ATP1 23.4 1.1E+02 0.0023 19.1 2.7 23 200-222 8-30 (50)
346 PRK04020 rps2P 30S ribosomal p 23.3 4.2E+02 0.0091 21.7 8.4 28 81-108 115-143 (204)
347 cd01840 SGNH_hydrolase_yrhL_li 22.8 3.3E+02 0.0072 20.3 6.4 36 15-54 51-86 (150)
348 cd00633 Secretoglobin Secretog 22.6 2.3E+02 0.0049 18.4 6.1 50 136-185 15-64 (67)
349 PF12965 DUF3854: Domain of un 22.5 92 0.002 23.4 2.8 33 77-110 5-37 (130)
350 PRK10100 DNA-binding transcrip 22.3 3.3E+02 0.0071 22.2 6.3 51 101-153 80-130 (216)
351 TIGR03848 MSMEG_4193 probable 22.3 79 0.0017 25.3 2.6 25 82-106 145-169 (204)
352 PRK04125 murein hydrolase regu 22.2 2.4E+02 0.0052 21.6 5.0 21 221-241 107-128 (141)
353 TIGR00173 menD 2-succinyl-5-en 22.2 2.6E+02 0.0057 25.3 6.2 27 82-108 63-95 (432)
354 TIGR00421 ubiX_pad polyprenyl 21.9 4.1E+02 0.0089 21.1 7.1 34 97-130 107-144 (181)
355 PRK14071 6-phosphofructokinase 21.8 1E+02 0.0022 27.6 3.3 35 77-111 102-140 (360)
356 COG0352 ThiE Thiamine monophos 21.8 4.5E+02 0.0098 21.5 6.9 34 91-126 146-180 (211)
357 PF15013 CCSMST1: CCSMST1 fami 21.6 68 0.0015 21.9 1.7 16 191-206 21-36 (77)
358 PF06143 Baculo_11_kDa: Baculo 21.5 2.8E+02 0.006 19.3 4.7 17 196-213 28-44 (84)
359 TIGR03745 conj_TIGR03745 integ 21.4 2.2E+02 0.0048 20.6 4.3 44 197-242 31-74 (104)
360 cd01822 Lysophospholipase_L1_l 21.1 3.7E+02 0.008 20.2 6.6 9 48-56 66-74 (177)
361 PRK14118 gpmA phosphoglyceromu 21.0 66 0.0014 26.5 1.9 24 82-105 174-197 (227)
362 PRK13055 putative lipid kinase 20.9 1.1E+02 0.0024 26.7 3.4 30 81-110 58-93 (334)
363 cd08189 Fe-ADH5 Iron-containin 20.7 2.4E+02 0.0052 25.1 5.5 77 5-92 16-93 (374)
364 PRK10076 pyruvate formate lyas 20.7 3.1E+02 0.0067 22.4 5.7 52 1-56 19-76 (213)
365 PLN02291 phospho-2-dehydro-3-d 20.6 2E+02 0.0044 26.6 4.9 51 1-56 310-366 (474)
366 PRK07449 2-succinyl-5-enolpyru 20.5 2.8E+02 0.006 26.2 6.2 77 33-109 9-105 (568)
367 COG3245 CycB Cytochrome c5 [En 20.4 84 0.0018 23.4 2.0 49 99-148 60-122 (126)
368 PTZ00370 STEVOR; Provisional 20.4 1.1E+02 0.0024 26.4 3.1 24 198-223 251-274 (296)
369 PRK06276 acetolactate synthase 20.4 2.3E+02 0.005 26.9 5.6 27 82-108 63-95 (586)
370 PF09936 Methyltrn_RNA_4: SAM- 20.3 79 0.0017 25.4 2.0 10 16-25 104-113 (185)
371 PRK11709 putative L-ascorbate 20.2 2.1E+02 0.0045 25.5 4.9 56 1-57 261-321 (355)
372 PRK15454 ethanol dehydrogenase 20.2 3.7E+02 0.0081 24.2 6.7 18 78-95 102-119 (395)
373 PRK13337 putative lipid kinase 20.1 1.2E+02 0.0026 26.1 3.4 30 81-110 56-91 (304)
374 PRK15452 putative protease; Pr 20.0 7E+02 0.015 23.0 9.8 138 3-146 13-155 (443)
375 PF12496 BNIP2: Bcl2-/adenovir 20.0 46 0.001 25.1 0.7 9 84-92 115-123 (127)
No 1
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=6.9e-60 Score=434.80 Aligned_cols=232 Identities=47% Similarity=0.863 Sum_probs=142.9
Q ss_pred chHHHHHHhc-CCCceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCCCCCCCCCEEEeccCChhhhhCCC
Q psy16503 3 ETDIKKFLDE-SVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGKIDKILLKSWAPQRDILDHP 81 (244)
Q Consensus 3 p~~l~~~l~~-~~~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~~~~~~~nv~~~~~~pq~~lL~h~ 81 (244)
|++++.|+++ +++|+|||||||... .++.+..+.++++|+++|++|||++++......|+|+++.+|+||.++|+||
T Consensus 263 ~~~~~~~~~~~~~~~vv~vsfGs~~~--~~~~~~~~~~~~~~~~~~~~~iW~~~~~~~~~l~~n~~~~~W~PQ~~lL~hp 340 (500)
T PF00201_consen 263 PEELWNFLDSSGKKGVVYVSFGSIVS--SMPEEKLKEIAEAFENLPQRFIWKYEGEPPENLPKNVLIVKWLPQNDLLAHP 340 (500)
T ss_dssp HHHHHHHTSTTTTTEEEEEE-TSSST--T-HHHHHHHHHHHHHCSTTEEEEEETCSHGCHHHTTEEEESS--HHHHHTST
T ss_pred ccccchhhhccCCCCEEEEecCcccc--hhHHHHHHHHHHHHhhCCCcccccccccccccccceEEEeccccchhhhhcc
Confidence 5789999998 568999999999974 4788889999999999999999999985556678999999999999999999
Q ss_pred CeeEEEecCChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCChhHHHHHHHHH
Q psy16503 82 NVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSYKKRAEKVA 161 (244)
Q Consensus 82 ~~~l~IthgG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~~y~~~a~~~s 161 (244)
++++||||||+||+.||+++|||+|++|+++||+.||+++++.|+|+.++.++++.++|.++|+++++|++|++||++++
T Consensus 341 ~v~~fitHgG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~vl~~~~y~~~a~~ls 420 (500)
T PF00201_consen 341 RVKLFITHGGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEEKGVGVVLDKNDLTEEELRAAIREVLENPSYKENAKRLS 420 (500)
T ss_dssp TEEEEEES--HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHHTTSEEEEGGGC-SHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred cceeeeeccccchhhhhhhccCCccCCCCcccCCccceEEEEEeeEEEEEecCCcHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCChHHHHHHHHHHHHHcCCCCCCCcccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy16503 162 RLFQDRPMPPLDTAIYWIEHVIRHGGGAHLRPASLELYWWQYILLDVIIALILLIAAMVWSIQWLVRYALITYYN 236 (244)
Q Consensus 162 ~~~~~~~~~~~~~a~~~ie~~~~~~~~~~l~~~~~~~~~~~~~~lDv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (244)
++++++|.+|.++|++|+||++||+|++||++.+.+|+|||||+|||+++++++++++++++++++++++++..+
T Consensus 421 ~~~~~~p~~p~~~~~~~ie~v~~~~~~~~l~~~~~~l~~~~~~~lDv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (500)
T PF00201_consen 421 SLFRDRPISPLERAVWWIEYVARHGGAPHLRSPARDLSFYQYYLLDVIAFLLLIILLIIYIIFKICRFVCRKCVK 495 (500)
T ss_dssp HTTT-----------------------------------------------------------------------
T ss_pred HHHhcCCCCHHHHHHHHHHHHHhcCCCcccCChhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999988888777777777766665555433
No 2
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=1.5e-53 Score=391.34 Aligned_cols=211 Identities=33% Similarity=0.673 Sum_probs=200.6
Q ss_pred chHHHHHHhcCCCceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCCCC-CCCCCEEEeccCChhhhhCCC
Q psy16503 3 ETDIKKFLDESVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMS-GKIDKILLKSWAPQRDILDHP 81 (244)
Q Consensus 3 p~~l~~~l~~~~~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~~~-~~~~nv~~~~~~pq~~lL~h~ 81 (244)
|+++++|++++++|+|||||||...+..++.+.++.+++++++++++|||+++++..+ +.|+|+++.+|+||.++|+||
T Consensus 284 ~~~l~~fl~~~~~g~V~vS~GS~~~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~~~~~~p~Nv~i~~w~Pq~~lL~hp 363 (507)
T PHA03392 284 DDYLEEFLNNSTNGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEVEAINLPANVLTQKWFPQRAVLKHK 363 (507)
T ss_pred CHHHHHHHhcCCCcEEEEECCCCCcCCCCCHHHHHHHHHHHHhCCCeEEEEECCCcCcccCCCceEEecCCCHHHHhcCC
Confidence 5789999998877899999999987667899999999999999999999999865444 678999999999999999999
Q ss_pred CeeEEEecCChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCChhHHHHHHHHH
Q psy16503 82 NVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSYKKRAEKVA 161 (244)
Q Consensus 82 ~~~l~IthgG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~~y~~~a~~~s 161 (244)
++++||||||.||++||+++|||+|++|+++||+.||++++++|+|+.++..+++.++|.++|+++++|++|+++|++++
T Consensus 364 ~v~~fItHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~~G~G~~l~~~~~t~~~l~~ai~~vl~~~~y~~~a~~ls 443 (507)
T PHA03392 364 NVKAFVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVELGIGRALDTVTVSAAQLVLAIVDVIENPKYRKNLKELR 443 (507)
T ss_pred CCCEEEecCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHHcCcEEEeccCCcCHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCChHHHHHHHHHHHHHcC-CCCCCCcccCCccHHHHHHHHHHHHHH
Q psy16503 162 RLFQDRPMPPLDTAIYWIEHVIRHG-GGAHLRPASLELYWWQYILLDVIIALI 213 (244)
Q Consensus 162 ~~~~~~~~~~~~~a~~~ie~~~~~~-~~~~l~~~~~~~~~~~~~~lDv~~~~~ 213 (244)
+.++++|.+|.++|++|+||++||+ |++|||+++.+|+|||||+|||+++++
T Consensus 444 ~~~~~~p~~~~~~av~~iE~v~r~~~g~~~lr~~~~~l~~~qy~~lDv~~~~~ 496 (507)
T PHA03392 444 HLIRHQPMTPLHKAIWYTEHVIRNKHGNTSLKTKAANVSYSDYFMSYILVPLV 496 (507)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhCCCCcccccccccCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 999999999999999999999986653
No 3
>KOG1192|consensus
Probab=100.00 E-value=3.5e-40 Score=303.31 Aligned_cols=207 Identities=36% Similarity=0.741 Sum_probs=188.1
Q ss_pred chHHHHHHhcCCCceEEEEcCCCCCCCCCCHHHHHHHHHHHhcC-CCeEEEEecCCC-------CCC-CCCCEEEeccCC
Q psy16503 3 ETDIKKFLDESVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQI-PQRVIWKWEGEN-------MSG-KIDKILLKSWAP 73 (244)
Q Consensus 3 p~~l~~~l~~~~~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~-~~~viw~~~~~~-------~~~-~~~nv~~~~~~p 73 (244)
+.++.++++.+.+++|||||||...+..++++...+++.+++++ +.+|+|++.... .++ .+.||...+|+|
T Consensus 265 ~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~~~~l~~~l~~~~~~~FiW~~~~~~~~~~~~~~~~~~~~nV~~~~W~P 344 (496)
T KOG1192|consen 265 PLEWLDILDESRHSVVYISFGSMVNSADLPEEQKKELAKALESLQGVTFLWKYRPDDSIYFPEGLPNRGRGNVVLSKWAP 344 (496)
T ss_pred cHHHHHHHhhccCCeEEEECCcccccccCCHHHHHHHHHHHHhCCCceEEEEecCCcchhhhhcCCCCCcCceEEecCCC
Confidence 34566666654458999999999877789999999999999999 568999998632 223 256899999999
Q ss_pred hhhh-hCCCCeeEEEecCChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCChh
Q psy16503 74 QRDI-LDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPS 152 (244)
Q Consensus 74 q~~l-L~h~~~~l~IthgG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~~ 152 (244)
|.++ |.|+++++||||||+||+.|++++|||++++|+++||+.||+++++.|.|.++++.+++.+++.+++.+++.+++
T Consensus 345 Q~~lll~H~~v~~FvTHgG~nSt~E~~~~GvP~v~~Plf~DQ~~Na~~i~~~g~~~v~~~~~~~~~~~~~~~~~il~~~~ 424 (496)
T KOG1192|consen 345 QNDLLLDHPAVGGFVTHGGWNSTLESIYSGVPMVCVPLFGDQPLNARLLVRHGGGGVLDKRDLVSEELLEAIKEILENEE 424 (496)
T ss_pred cHHHhcCCCcCcEEEECCcccHHHHHHhcCCceecCCccccchhHHHHHHhCCCEEEEehhhcCcHHHHHHHHHHHcChH
Confidence 9998 589999999999999999999999999999999999999999999999999999888877779999999999999
Q ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCCCCCCcccCCccHHHHHHHHHHHH
Q psy16503 153 YKKRAEKVARLFQDRPMPPLDTAIYWIEHVIRHGGGAHLRPASLELYWWQYILLDVIIA 211 (244)
Q Consensus 153 y~~~a~~~s~~~~~~~~~~~~~a~~~ie~~~~~~~~~~l~~~~~~~~~~~~~~lDv~~~ 211 (244)
|+++++++++.++++|.+| +.+++|+|++.++++++++++. .+++|++|+++|++.+
T Consensus 425 y~~~~~~l~~~~~~~p~~~-~~~~~~~e~~~~~~~~~~l~~~-~~~~~~~~~~~d~~~~ 481 (496)
T KOG1192|consen 425 YKEAAKRLSEILRDQPISP-ELAVKWVEFVARHGGAKHLKEA-AHLSFIEYGSLDVIAF 481 (496)
T ss_pred HHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHhcCCCcccCcc-ccCChhhhhhhHHHHH
Confidence 9999999999999999999 9999999999999999999998 8999999999999977
No 4
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=2.8e-34 Score=260.87 Aligned_cols=177 Identities=23% Similarity=0.412 Sum_probs=151.5
Q ss_pred hHHHHHHhcCC-CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCC-C-----CCCCCCC---------EE
Q psy16503 4 TDIKKFLDESV-NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGE-N-----MSGKIDK---------IL 67 (244)
Q Consensus 4 ~~l~~~l~~~~-~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~-~-----~~~~~~n---------v~ 67 (244)
+++.+|||+.+ +++|||||||... ++.+.+++++.+|+..+++|+|++... . ....|++ +.
T Consensus 266 ~~~~~wLd~~~~~sVvyvsfGS~~~---l~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~lp~~f~~~~~~rG~v 342 (472)
T PLN02670 266 VRIKEWLDKQRVNSVVYVALGTEAS---LRREEVTELALGLEKSETPFFWVLRNEPGTTQNALEMLPDGFEERVKGRGMI 342 (472)
T ss_pred HHHHHHHhcCCCCceEEEEeccccc---CCHHHHHHHHHHHHHCCCCEEEEEcCCcccccchhhcCChHHHHhccCCCeE
Confidence 46889999975 7999999999964 889999999999999999999999742 1 1123433 78
Q ss_pred EeccCChhhhhCCCCeeEEEecCChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCC----CCCHHHHHHH
Q psy16503 68 LKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYD----QITEETVLVA 143 (244)
Q Consensus 68 ~~~~~pq~~lL~h~~~~l~IthgG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~----~~~~~~l~~a 143 (244)
+.+|+||.++|.|+.+++||||||+||+.||+++|||||++|+++||+.||+++++.|+|+.++.. .++.+++.++
T Consensus 343 v~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~g~Gv~l~~~~~~~~~~~e~i~~a 422 (472)
T PLN02670 343 HVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFPVLNEQGLNTRLLHGKKLGLEVPRDERDGSFTSDSVAES 422 (472)
T ss_pred EeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCcchhccHHHHHHHHHcCeeEEeeccccCCcCcHHHHHHH
Confidence 889999999999999999999999999999999999999999999999999999999999999653 3889999999
Q ss_pred HHHHhCCh---hHHHHHHHHHHHHhCCCCChHHHHHHH-HHHHHHc
Q psy16503 144 LRTVLGNP---SYKKRAEKVARLFQDRPMPPLDTAIYW-IEHVIRH 185 (244)
Q Consensus 144 i~~ll~~~---~y~~~a~~~s~~~~~~~~~~~~~a~~~-ie~~~~~ 185 (244)
|+++|.++ +||++|+++++.+++++. .+.+++- +.++.+.
T Consensus 423 v~~vm~~~~g~~~r~~a~~l~~~~~~~~~--~~~~~~~~~~~l~~~ 466 (472)
T PLN02670 423 VRLAMVDDAGEEIRDKAKEMRNLFGDMDR--NNRYVDELVHYLREN 466 (472)
T ss_pred HHHHhcCcchHHHHHHHHHHHHHHhCcch--hHHHHHHHHHHHHHh
Confidence 99999876 799999999999999653 4445544 4444443
No 5
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.3e-33 Score=256.87 Aligned_cols=180 Identities=23% Similarity=0.471 Sum_probs=149.4
Q ss_pred chHHHHHHhcCC-CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCC-----------------CCC---
Q psy16503 3 ETDIKKFLDESV-NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGEN-----------------MSG--- 61 (244)
Q Consensus 3 p~~l~~~l~~~~-~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~-----------------~~~--- 61 (244)
++++.+|+++.+ +++|||||||... ++.+.+++++.+|+..+++|||+++... ++.
T Consensus 261 ~~~~~~wLd~~~~~svvyvsfGS~~~---~~~~~~~~la~~l~~~~~~flW~~~~~~~~~~~~~~~~~~~~~~~lp~~~~ 337 (481)
T PLN02554 261 QSEILRWLDEQPPKSVVFLCFGSMGG---FSEEQAREIAIALERSGHRFLWSLRRASPNIMKEPPGEFTNLEEILPEGFL 337 (481)
T ss_pred chHHHHHHhcCCCCcEEEEecccccc---CCHHHHHHHHHHHHHcCCCeEEEEcCCcccccccccccccchhhhCChHHH
Confidence 357999999875 6899999999843 7889999999999999999999986410 111
Q ss_pred --CCCCEEEeccCChhhhhCCCCeeEEEecCChhhHHHHHHhCCcEEecCCCcchhhHHH-HHHHcCceeecCC------
Q psy16503 62 --KIDKILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIR-VVEKAGFGVTLPY------ 132 (244)
Q Consensus 62 --~~~nv~~~~~~pq~~lL~h~~~~l~IthgG~~s~~Eal~~gvP~i~vP~~~dQ~~na~-~~~~~G~g~~l~~------ 132 (244)
.++|.++.+|+||.++|.|+.+++||||||+||+.||+++|||||++|+++||+.||+ ++++.|+|+.++.
T Consensus 338 ~r~~~~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P~~~DQ~~Na~~~v~~~g~Gv~l~~~~~~~~ 417 (481)
T PLN02554 338 DRTKDIGKVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAVEIRKYWRGDL 417 (481)
T ss_pred HHhccCceEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEeeccccccc
Confidence 3457788999999999999999999999999999999999999999999999999995 5778899999863
Q ss_pred -----CCCCHHHHHHHHHHHhC-ChhHHHHHHHHHHHHhC---CCCChHHHHHHHHHHHHHc
Q psy16503 133 -----DQITEETVLVALRTVLG-NPSYKKRAEKVARLFQD---RPMPPLDTAIYWIEHVIRH 185 (244)
Q Consensus 133 -----~~~~~~~l~~ai~~ll~-~~~y~~~a~~~s~~~~~---~~~~~~~~a~~~ie~~~~~ 185 (244)
..++.++|.++|+++|. |++||++++++++.+++ ...+........|+.+.++
T Consensus 418 ~~~~~~~~~~e~l~~av~~vm~~~~~~r~~a~~l~~~~~~av~~gGss~~~l~~lv~~~~~~ 479 (481)
T PLN02554 418 LAGEMETVTAEEIERGIRCLMEQDSDVRKRVKEMSEKCHVALMDGGSSHTALKKFIQDVTKN 479 (481)
T ss_pred cccccCeEcHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhh
Confidence 35799999999999996 78999999999998874 2223333444555555443
No 6
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=1.3e-32 Score=249.73 Aligned_cols=160 Identities=28% Similarity=0.522 Sum_probs=140.9
Q ss_pred hHHHHHHhcCC-CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCC------CC-C----CCCCEEEecc
Q psy16503 4 TDIKKFLDESV-NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGEN------MS-G----KIDKILLKSW 71 (244)
Q Consensus 4 ~~l~~~l~~~~-~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~------~~-~----~~~nv~~~~~ 71 (244)
+++.+|||+.+ +++|||||||... ++.+.+++++.+|+..+++|+|++++.. ++ + .++|..+.+|
T Consensus 263 ~~~~~WLd~~~~~sVVyvSfGS~~~---~~~~q~~ela~~l~~~~~~flW~~r~~~~~~~~~lp~~f~er~~~~g~i~~W 339 (468)
T PLN02207 263 DELMKWLDDQPEASVVFLCFGSMGR---LRGPLVKEIAHGLELCQYRFLWSLRTEEVTNDDLLPEGFLDRVSGRGMICGW 339 (468)
T ss_pred hHHHHHHhcCCCCcEEEEEeccCcC---CCHHHHHHHHHHHHHCCCcEEEEEeCCCccccccCCHHHHhhcCCCeEEEEe
Confidence 57999999875 6999999999864 7899999999999999999999998421 11 1 3567888999
Q ss_pred CChhhhhCCCCeeEEEecCChhhHHHHHHhCCcEEecCCCcchhhHHHHHHH-cCceeecC------CC-CCCHHHHHHH
Q psy16503 72 APQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEK-AGFGVTLP------YD-QITEETVLVA 143 (244)
Q Consensus 72 ~pq~~lL~h~~~~l~IthgG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~-~G~g~~l~------~~-~~~~~~l~~a 143 (244)
+||.++|.|+++++||||||+||+.||+++|||||++|+++||+.||+++++ .|+|+.+. .+ .++.++|.++
T Consensus 340 ~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~a 419 (468)
T PLN02207 340 SPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYAEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETA 419 (468)
T ss_pred CCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCccccchhhHHHHHHHhCceEEEecccccccCCcccHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998877 79998653 22 3488999999
Q ss_pred HHHHhC--ChhHHHHHHHHHHHHhC
Q psy16503 144 LRTVLG--NPSYKKRAEKVARLFQD 166 (244)
Q Consensus 144 i~~ll~--~~~y~~~a~~~s~~~~~ 166 (244)
|+++|. +++||++|++++++.++
T Consensus 420 v~~vm~~~~~~~r~~a~~l~~~a~~ 444 (468)
T PLN02207 420 IRCVMNKDNNVVRKRVMDISQMIQR 444 (468)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHH
Confidence 999997 68999999999998873
No 7
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=8.4e-33 Score=250.11 Aligned_cols=160 Identities=21% Similarity=0.430 Sum_probs=142.5
Q ss_pred hHHHHHHhcCC-CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCC--------CCCC-CC---------C
Q psy16503 4 TDIKKFLDESV-NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGE--------NMSG-KI---------D 64 (244)
Q Consensus 4 ~~l~~~l~~~~-~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~--------~~~~-~~---------~ 64 (244)
++..+|||+.+ +++|||||||... ++.+.+++++.+|+..+++|+|+++.. ...+ .| .
T Consensus 258 ~~c~~wLd~~~~~sVvyvsfGS~~~---~~~~q~~ela~gL~~s~~~FlW~~r~~~~~~~~~~~~~~~lp~gf~er~~~~ 334 (451)
T PLN03004 258 VSCLNWLDSQPEKSVVFLCFGSLGL---FSKEQVIEIAVGLEKSGQRFLWVVRNPPELEKTELDLKSLLPEGFLSRTEDK 334 (451)
T ss_pred hHHHHHHHhCCCCceEEEEeccccc---CCHHHHHHHHHHHHHCCCCEEEEEcCCccccccccchhhhCChHHHHhccCC
Confidence 35789999874 7999999999944 899999999999999999999999842 1122 34 6
Q ss_pred CEEEeccCChhhhhCCCCeeEEEecCChhhHHHHHHhCCcEEecCCCcchhhHHHHHHH-cCceeecCCC---CCCHHHH
Q psy16503 65 KILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEK-AGFGVTLPYD---QITEETV 140 (244)
Q Consensus 65 nv~~~~~~pq~~lL~h~~~~l~IthgG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~-~G~g~~l~~~---~~~~~~l 140 (244)
|+++.+|+||.++|.|+.+++||||||+||+.||+++|||+|++|+++||+.||+++++ .|+|+.++.+ .++.++|
T Consensus 335 g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~na~~~~~~~g~g~~l~~~~~~~~~~e~l 414 (451)
T PLN03004 335 GMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEIKIAISMNESETGFVSSTEV 414 (451)
T ss_pred cEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEecCCcCCccCHHHH
Confidence 89999999999999999999999999999999999999999999999999999999986 5999999754 4699999
Q ss_pred HHHHHHHhCChhHHHHHHHHHHHHhC
Q psy16503 141 LVALRTVLGNPSYKKRAEKVARLFQD 166 (244)
Q Consensus 141 ~~ai~~ll~~~~y~~~a~~~s~~~~~ 166 (244)
.++|++++.|++|++++++++++.+.
T Consensus 415 ~~av~~vm~~~~~r~~a~~~~~~a~~ 440 (451)
T PLN03004 415 EKRVQEIIGECPVRERTMAMKNAAEL 440 (451)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999998876653
No 8
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=1.7e-31 Score=241.55 Aligned_cols=176 Identities=22% Similarity=0.327 Sum_probs=140.9
Q ss_pred chHHHHHHhcCC-CceEEEEcCCCCCCCCCCHHHHHHHHHH--HhcCCCeEEEEecCC---CCCCCC---------CCEE
Q psy16503 3 ETDIKKFLDESV-NGVIYFSMGSIIQGKSFPSDKRKAFLRA--FEQIPQRVIWKWEGE---NMSGKI---------DKIL 67 (244)
Q Consensus 3 p~~l~~~l~~~~-~~vI~vs~Gs~~~~~~~~~~~~~~i~~a--l~~~~~~viw~~~~~---~~~~~~---------~nv~ 67 (244)
++++.+|||+.+ +++|||||||... ++.+.+.+++.. ++..|..++|+.+.. .....| .|+.
T Consensus 238 ~~~~~~wLd~~~~~sVvyvSfGS~~~---l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~~~~~~~lp~~f~~r~~~~g~~ 314 (442)
T PLN02208 238 EEQWSHFLSGFPPKSVVFCSLGSQII---LEKDQFQELCLGMELTGLPFLIAVKPPRGSSTVQEGLPEGFEERVKGRGVV 314 (442)
T ss_pred HHHHHHHHhcCCCCcEEEEecccccc---CCHHHHHHHHHHHHhCCCcEEEEEeCCCcccchhhhCCHHHHHHHhcCCcE
Confidence 467999999875 7999999999974 777766666665 455555666665411 112234 6899
Q ss_pred EeccCChhhhhCCCCeeEEEecCChhhHHHHHHhCCcEEecCCCcchhhHHHHHHH-cCceeecCCCC---CCHHHHHHH
Q psy16503 68 LKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEK-AGFGVTLPYDQ---ITEETVLVA 143 (244)
Q Consensus 68 ~~~~~pq~~lL~h~~~~l~IthgG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~-~G~g~~l~~~~---~~~~~l~~a 143 (244)
+.+|+||.++|.|+++++||||||+||++||+++|||||++|+++||+.||+++++ .|+|+.++.++ ++.++|.++
T Consensus 315 v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~~~~~~~~~~~l~~a 394 (442)
T PLN02208 315 WGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVEVSREKTGWFSKESLSNA 394 (442)
T ss_pred eeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHHHHHhceeEEeccccCCcCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998776 79999997654 899999999
Q ss_pred HHHHhCChh-----HHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q psy16503 144 LRTVLGNPS-----YKKRAEKVARLFQDRPMPPLDTAIYWIEHV 182 (244)
Q Consensus 144 i~~ll~~~~-----y~~~a~~~s~~~~~~~~~~~~~a~~~ie~~ 182 (244)
|++++.+++ +|++++++++.... +.+........++.+
T Consensus 395 i~~~m~~~~e~g~~~r~~~~~~~~~~~~-~gsS~~~l~~~v~~l 437 (442)
T PLN02208 395 IKSVMDKDSDLGKLVRSNHTKLKEILVS-PGLLTGYVDKFVEEL 437 (442)
T ss_pred HHHHhcCCchhHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHH
Confidence 999997653 89999999888865 334444444445544
No 9
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=1.6e-31 Score=242.60 Aligned_cols=158 Identities=25% Similarity=0.384 Sum_probs=140.1
Q ss_pred HHHHHhcCC-CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCC---CCCC-----CCCCEEEeccCChhh
Q psy16503 6 IKKFLDESV-NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGE---NMSG-----KIDKILLKSWAPQRD 76 (244)
Q Consensus 6 l~~~l~~~~-~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~---~~~~-----~~~nv~~~~~~pq~~ 76 (244)
..+||++.+ +++|||||||.. ..++.+.+++++.+|+..+++|||++... .++. .++|+++.+|+||.+
T Consensus 263 c~~wLd~~~~~svvyvsfGS~~--~~~~~~~~~~l~~~l~~~g~~fiW~~~~~~~~~l~~~~~~~~~~~~~v~~w~PQ~~ 340 (448)
T PLN02562 263 CLGWLQEQKPNSVIYISFGSWV--SPIGESNVRTLALALEASGRPFIWVLNPVWREGLPPGYVERVSKQGKVVSWAPQLE 340 (448)
T ss_pred HHHHHhcCCCCceEEEEecccc--cCCCHHHHHHHHHHHHHCCCCEEEEEcCCchhhCCHHHHHHhccCEEEEecCCHHH
Confidence 459999975 689999999985 24689999999999999999999998631 2332 467899999999999
Q ss_pred hhCCCCeeEEEecCChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHc-CceeecCCCCCCHHHHHHHHHHHhCChhHHH
Q psy16503 77 ILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKA-GFGVTLPYDQITEETVLVALRTVLGNPSYKK 155 (244)
Q Consensus 77 lL~h~~~~l~IthgG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~-G~g~~l~~~~~~~~~l~~ai~~ll~~~~y~~ 155 (244)
+|.|+.+++||||||+||+.||+++|||+|++|+++||+.||+++++. |+|+.+. +++.+++.++|+++|.|++||+
T Consensus 341 iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~--~~~~~~l~~~v~~~l~~~~~r~ 418 (448)
T PLN02562 341 VLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWKIGVRIS--GFGQKEVEEGLRKVMEDSGMGE 418 (448)
T ss_pred HhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHHHHHHHHHhCceeEeC--CCCHHHHHHHHHHHhCCHHHHH
Confidence 999999999999999999999999999999999999999999999875 8887774 5789999999999999999999
Q ss_pred HHHHHHHHHhCC
Q psy16503 156 RAEKVARLFQDR 167 (244)
Q Consensus 156 ~a~~~s~~~~~~ 167 (244)
+++++++.....
T Consensus 419 ~a~~l~~~~~~~ 430 (448)
T PLN02562 419 RLMKLRERAMGE 430 (448)
T ss_pred HHHHHHHHHHhc
Confidence 999998887653
No 10
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.98 E-value=3.4e-31 Score=240.20 Aligned_cols=158 Identities=25% Similarity=0.445 Sum_probs=139.8
Q ss_pred HHHHHHhcCC-CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCC-----C----CCC-----CCCCEEEe
Q psy16503 5 DIKKFLDESV-NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGE-----N----MSG-----KIDKILLK 69 (244)
Q Consensus 5 ~l~~~l~~~~-~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~-----~----~~~-----~~~nv~~~ 69 (244)
+..+|||+.+ +++|||||||... ++.+.+++++.+|+..+++|+|+++.. + +++ .++|..+.
T Consensus 253 ~~~~wLd~~~~~sVvyvsfGS~~~---~~~~q~~ela~gLe~s~~~FlWv~r~~~~~~~~~~~~lp~~f~er~~~~g~v~ 329 (451)
T PLN02410 253 SCIEWLNKQKKNSVIFVSLGSLAL---MEINEVMETASGLDSSNQQFLWVIRPGSVRGSEWIESLPKEFSKIISGRGYIV 329 (451)
T ss_pred HHHHHHHhCCCCcEEEEEcccccc---CCHHHHHHHHHHHHhcCCCeEEEEccCcccccchhhcCChhHHHhccCCeEEE
Confidence 4578999975 7899999999964 788999999999999999999998732 1 221 34778999
Q ss_pred ccCChhhhhCCCCeeEEEecCChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHc-CceeecCCCCCCHHHHHHHHHHHh
Q psy16503 70 SWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKA-GFGVTLPYDQITEETVLVALRTVL 148 (244)
Q Consensus 70 ~~~pq~~lL~h~~~~l~IthgG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~-G~g~~l~~~~~~~~~l~~ai~~ll 148 (244)
+|+||.++|.|+++++||||||+||+.||+++|||+|++|+++||+.||+++++. |+|+.++ ..++.++|.++|+++|
T Consensus 330 ~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~-~~~~~~~v~~av~~lm 408 (451)
T PLN02410 330 KWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVNARYLECVWKIGIQVE-GDLDRGAVERAVKRLM 408 (451)
T ss_pred ccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHHHHHHHHHhCeeEEeC-CcccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999877 9999997 6789999999999999
Q ss_pred CCh---hHHHHHHHHHHHHhC
Q psy16503 149 GNP---SYKKRAEKVARLFQD 166 (244)
Q Consensus 149 ~~~---~y~~~a~~~s~~~~~ 166 (244)
.++ .||++++++++.++.
T Consensus 409 ~~~~~~~~r~~a~~l~~~~~~ 429 (451)
T PLN02410 409 VEEEGEEMRKRAISLKEQLRA 429 (451)
T ss_pred cCCcHHHHHHHHHHHHHHHHH
Confidence 775 588888888877764
No 11
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=99.98 E-value=3.8e-31 Score=239.56 Aligned_cols=160 Identities=26% Similarity=0.507 Sum_probs=136.1
Q ss_pred hHHHHHHhcCC-CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCC---------C-------CCC----C
Q psy16503 4 TDIKKFLDESV-NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGE---------N-------MSG----K 62 (244)
Q Consensus 4 ~~l~~~l~~~~-~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~---------~-------~~~----~ 62 (244)
.++.+|||+.+ +++|||||||... ++.+.+++++.+|+..+++|||++++. . .++ .
T Consensus 249 ~~~~~wLd~~~~~sVvyvsfGS~~~---l~~~q~~ela~gL~~s~~~flWv~r~~~~~~~~~~~~~~~~~~~~~~f~e~~ 325 (455)
T PLN02152 249 SSYTLWLDSKTESSVIYVSFGTMVE---LSKKQIEELARALIEGKRPFLWVITDKLNREAKIEGEEETEIEKIAGFRHEL 325 (455)
T ss_pred hHHHHHhhCCCCCceEEEEeccccc---CCHHHHHHHHHHHHHcCCCeEEEEecCcccccccccccccccccchhHHHhc
Confidence 36899999975 6999999999964 899999999999999999999998741 0 011 3
Q ss_pred CCCEEEeccCChhhhhCCCCeeEEEecCChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHc-Cceeec--CCC-CCCHH
Q psy16503 63 IDKILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKA-GFGVTL--PYD-QITEE 138 (244)
Q Consensus 63 ~~nv~~~~~~pq~~lL~h~~~~l~IthgG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~-G~g~~l--~~~-~~~~~ 138 (244)
++|.++.+|+||.++|.|+++++||||||+||+.||+++|||+|++|+++||+.||+++++. |+|+.+ +.+ .++.+
T Consensus 326 ~~~g~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~e 405 (455)
T PLN02152 326 EEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQPANAKLLEEIWKTGVRVRENSEGLVERG 405 (455)
T ss_pred cCCeEEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEeccccccchHHHHHHHHHhCceEEeecCcCCcCcHH
Confidence 56788899999999999999999999999999999999999999999999999999999983 555444 333 35899
Q ss_pred HHHHHHHHHhCChh--HHHHHHHHHHHHhC
Q psy16503 139 TVLVALRTVLGNPS--YKKRAEKVARLFQD 166 (244)
Q Consensus 139 ~l~~ai~~ll~~~~--y~~~a~~~s~~~~~ 166 (244)
+|.++|+++|.|+. +|++++++++..+.
T Consensus 406 ~l~~av~~vm~~~~~~~r~~a~~~~~~~~~ 435 (455)
T PLN02152 406 EIRRCLEAVMEEKSVELRESAEKWKRLAIE 435 (455)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 99999999997654 79999777766553
No 12
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=99.98 E-value=4.8e-31 Score=240.01 Aligned_cols=159 Identities=24% Similarity=0.442 Sum_probs=136.5
Q ss_pred hHHHHHHhcCC-CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCC------------------C-CC-CC
Q psy16503 4 TDIKKFLDESV-NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGE------------------N-MS-GK 62 (244)
Q Consensus 4 ~~l~~~l~~~~-~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~------------------~-~~-~~ 62 (244)
++..+|||+.+ +++|||||||... ++.+.+++++.+|+..+++|||++... + .. ..
T Consensus 251 ~~c~~wLd~~~~~sVvyvsfGS~~~---l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~~~~~~~~~~~~~~~~~~~l 327 (481)
T PLN02992 251 HPVLDWLNKQPNESVLYISFGSGGS---LSAKQLTELAWGLEMSQQRFVWVVRPPVDGSACSAYFSANGGETRDNTPEYL 327 (481)
T ss_pred HHHHHHHHcCCCCceEEEeeccccc---CCHHHHHHHHHHHHHcCCCEEEEEeCCcccccccccccCcccccccchhhhC
Confidence 35889999874 7999999999944 899999999999999999999999521 0 01 13
Q ss_pred CC---------CEEEeccCChhhhhCCCCeeEEEecCChhhHHHHHHhCCcEEecCCCcchhhHHHHHH-HcCceeecCC
Q psy16503 63 ID---------KILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVE-KAGFGVTLPY 132 (244)
Q Consensus 63 ~~---------nv~~~~~~pq~~lL~h~~~~l~IthgG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~-~~G~g~~l~~ 132 (244)
|+ ++.+.+|+||.++|.|+++.+||||||+||+.||+++|||||++|+++||+.||++++ +.|+|+.++.
T Consensus 328 p~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~~~~g~gv~~~~ 407 (481)
T PLN02992 328 PEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELGIAVRSDD 407 (481)
T ss_pred CHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecCccchhHHHHHHHHHHhCeeEEecC
Confidence 43 5899999999999999999999999999999999999999999999999999999995 8899999976
Q ss_pred C--CCCHHHHHHHHHHHhCCh---hHHHHHHHHHHHHh
Q psy16503 133 D--QITEETVLVALRTVLGNP---SYKKRAEKVARLFQ 165 (244)
Q Consensus 133 ~--~~~~~~l~~ai~~ll~~~---~y~~~a~~~s~~~~ 165 (244)
. .++.++|.++|++++.++ .++++++++++..+
T Consensus 408 ~~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~ 445 (481)
T PLN02992 408 PKEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAE 445 (481)
T ss_pred CCCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 3 489999999999999763 56677766665554
No 13
>PLN03007 UDP-glucosyltransferase family protein
Probab=99.97 E-value=1e-30 Score=239.56 Aligned_cols=161 Identities=29% Similarity=0.462 Sum_probs=138.9
Q ss_pred chHHHHHHhcCC-CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCC--------CCCC------CCCCEE
Q psy16503 3 ETDIKKFLDESV-NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGE--------NMSG------KIDKIL 67 (244)
Q Consensus 3 p~~l~~~l~~~~-~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~--------~~~~------~~~nv~ 67 (244)
++++.+|+++.+ +++|||||||... ++.+.+.+++.+|+..+++|+|+++.. .+++ .+.|++
T Consensus 272 ~~~~~~wLd~~~~~svvyvsfGS~~~---~~~~~~~~~~~~l~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~ 348 (482)
T PLN03007 272 EQECLKWLDSKKPDSVIYLSFGSVAS---FKNEQLFEIAAGLEGSGQNFIWVVRKNENQGEKEEWLPEGFEERTKGKGLI 348 (482)
T ss_pred hhHHHHHHhcCCCCceEEEeecCCcC---CCHHHHHHHHHHHHHCCCCEEEEEecCCcccchhhcCCHHHHHHhccCCEE
Confidence 467899999874 7899999999954 677889999999999999999998742 1232 356899
Q ss_pred EeccCChhhhhCCCCeeEEEecCChhhHHHHHHhCCcEEecCCCcchhhHHHHHH---HcCceeec------CCCCCCHH
Q psy16503 68 LKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVE---KAGFGVTL------PYDQITEE 138 (244)
Q Consensus 68 ~~~~~pq~~lL~h~~~~l~IthgG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~---~~G~g~~l------~~~~~~~~ 138 (244)
+.+|+||.++|.|+.+++||||||+||+.||+++|||+|++|+++||+.||++++ +.|+|+.. +...++.+
T Consensus 349 v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GVP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~ 428 (482)
T PLN03007 349 IRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGLPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISRE 428 (482)
T ss_pred EecCCCHHHHhccCccceeeecCcchHHHHHHHcCCCeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHH
Confidence 9999999999999999999999999999999999999999999999999999886 45666532 33567999
Q ss_pred HHHHHHHHHhCCh---hHHHHHHHHHHHHhC
Q psy16503 139 TVLVALRTVLGNP---SYKKRAEKVARLFQD 166 (244)
Q Consensus 139 ~l~~ai~~ll~~~---~y~~~a~~~s~~~~~ 166 (244)
+|.++|++++.++ +||++++++++..++
T Consensus 429 ~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~ 459 (482)
T PLN03007 429 KVEKAVREVIVGEEAEERRLRAKKLAEMAKA 459 (482)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999887 899999999887764
No 14
>PLN02555 limonoid glucosyltransferase
Probab=99.97 E-value=2.1e-30 Score=236.16 Aligned_cols=179 Identities=25% Similarity=0.379 Sum_probs=148.3
Q ss_pred hHHHHHHhcCC-CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCC---------CCC-----CCCCCEEE
Q psy16503 4 TDIKKFLDESV-NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGE---------NMS-----GKIDKILL 68 (244)
Q Consensus 4 ~~l~~~l~~~~-~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~---------~~~-----~~~~nv~~ 68 (244)
+++.+||++.+ +++|||||||... ++.+.+.+++.+++..+++|||+++.. .++ ..++|..+
T Consensus 265 ~~~~~wLd~~~~~sVvyvsfGS~~~---~~~~q~~ela~~l~~~~~~flW~~~~~~~~~~~~~~~lp~~~~~~~~~~g~v 341 (480)
T PLN02555 265 DDCIEWLDSKPPSSVVYISFGTVVY---LKQEQIDEIAYGVLNSGVSFLWVMRPPHKDSGVEPHVLPEEFLEKAGDKGKI 341 (480)
T ss_pred hhHHHHHhCCCCCceeEEEeccccC---CCHHHHHHHHHHHHhcCCeEEEEEecCcccccchhhcCChhhhhhcCCceEE
Confidence 56889999975 6799999999864 788999999999999999999997621 122 23468899
Q ss_pred eccCChhhhhCCCCeeEEEecCChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHc-CceeecC-----CCCCCHHHHHH
Q psy16503 69 KSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKA-GFGVTLP-----YDQITEETVLV 142 (244)
Q Consensus 69 ~~~~pq~~lL~h~~~~l~IthgG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~-G~g~~l~-----~~~~~~~~l~~ 142 (244)
.+|+||.++|.|+++++||||||+||+.||+++|||||++|+++||+.||+++++. |+|+.+. ...++.+++.+
T Consensus 342 ~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~ 421 (480)
T PLN02555 342 VQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVTDAVYLVDVFKTGVRLCRGEAENKLITREEVAE 421 (480)
T ss_pred EecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCCccccHHHHHHHHHHhCceEEccCCccccCcCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987 9999993 34678999999
Q ss_pred HHHHHhCC---hhHHHHHHHHHHHHhCC---CCChHHHHHHHHHHHHHc
Q psy16503 143 ALRTVLGN---PSYKKRAEKVARLFQDR---PMPPLDTAIYWIEHVIRH 185 (244)
Q Consensus 143 ai~~ll~~---~~y~~~a~~~s~~~~~~---~~~~~~~a~~~ie~~~~~ 185 (244)
+|+++|.+ ..+|++|++++++.+.- ..+.-......|+++.+.
T Consensus 422 ~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~v~~i~~~ 470 (480)
T PLN02555 422 CLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNFQEFVDKLVRK 470 (480)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhc
Confidence 99999976 46899999988775431 123334445566666544
No 15
>PLN02167 UDP-glycosyltransferase family protein
Probab=99.97 E-value=1.3e-30 Score=238.42 Aligned_cols=160 Identities=26% Similarity=0.499 Sum_probs=137.5
Q ss_pred hHHHHHHhcCC-CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCC------CCCCCCC--------EEE
Q psy16503 4 TDIKKFLDESV-NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGEN------MSGKIDK--------ILL 68 (244)
Q Consensus 4 ~~l~~~l~~~~-~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~------~~~~~~n--------v~~ 68 (244)
+++.+||++.+ +++|||||||... ++.+.+++++.+|+..+++|||+++... ....|++ .++
T Consensus 268 ~~~~~wld~~~~~svvyvsfGS~~~---~~~~~~~ela~~l~~~~~~flw~~~~~~~~~~~~~~~lp~~~~er~~~rg~v 344 (475)
T PLN02167 268 DRIMRWLDDQPESSVVFLCFGSLGS---LPAPQIKEIAQALELVGCRFLWSIRTNPAEYASPYEPLPEGFMDRVMGRGLV 344 (475)
T ss_pred HHHHHHHhcCCCCceEEEeeccccc---CCHHHHHHHHHHHHhCCCcEEEEEecCcccccchhhhCChHHHHHhccCeee
Confidence 57899999875 6899999999844 6888999999999999999999987421 1123443 367
Q ss_pred eccCChhhhhCCCCeeEEEecCChhhHHHHHHhCCcEEecCCCcchhhHHHH-HHHcCceeecCC-------CCCCHHHH
Q psy16503 69 KSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRV-VEKAGFGVTLPY-------DQITEETV 140 (244)
Q Consensus 69 ~~~~pq~~lL~h~~~~l~IthgG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~-~~~~G~g~~l~~-------~~~~~~~l 140 (244)
.+|+||.++|.|+.+++||||||+||+.||+++|||||++|+++||+.||++ +++.|+|+.+.. ..++.++|
T Consensus 345 ~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~~~~~l 424 (475)
T PLN02167 345 CGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWPMYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEI 424 (475)
T ss_pred eccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEeccccccchhhHHHHHHHhCeeEEeecccccccCCcccHHHH
Confidence 8999999999999999999999999999999999999999999999999976 678899998853 24689999
Q ss_pred HHHHHHHhCCh-hHHHHHHHHHHHHhC
Q psy16503 141 LVALRTVLGNP-SYKKRAEKVARLFQD 166 (244)
Q Consensus 141 ~~ai~~ll~~~-~y~~~a~~~s~~~~~ 166 (244)
.++|+++|.++ .||++++++++..+.
T Consensus 425 ~~av~~~m~~~~~~r~~a~~~~~~~~~ 451 (475)
T PLN02167 425 AGAVRSLMDGEDVPRKKVKEIAEAARK 451 (475)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 99999999765 799999999887654
No 16
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=99.97 E-value=4.7e-30 Score=234.23 Aligned_cols=179 Identities=23% Similarity=0.378 Sum_probs=147.2
Q ss_pred hHHHHHHhcCC-CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCC-----CCCC---------CCCEEE
Q psy16503 4 TDIKKFLDESV-NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGEN-----MSGK---------IDKILL 68 (244)
Q Consensus 4 ~~l~~~l~~~~-~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~-----~~~~---------~~nv~~ 68 (244)
+++.+||++.+ +++|||||||... ++.+.+++++.+|+..+.+|+|+++... .... +.++++
T Consensus 271 ~~~~~WLd~~~~~svVyvsfGS~~~---~~~~~~~ela~gL~~~~~~flw~~~~~~~~~~~~~~lp~~~~~r~~~~g~~v 347 (477)
T PLN02863 271 DDVMTWLDTCEDHKVVYVCFGSQVV---LTKEQMEALASGLEKSGVHFIWCVKEPVNEESDYSNIPSGFEDRVAGRGLVI 347 (477)
T ss_pred HHHHHHHhcCCCCceEEEEeeceec---CCHHHHHHHHHHHHhCCCcEEEEECCCcccccchhhCCHHHHHHhccCCEEe
Confidence 57899999875 6899999999965 6788899999999999999999997421 1122 346888
Q ss_pred eccCChhhhhCCCCeeEEEecCChhhHHHHHHhCCcEEecCCCcchhhHHHHHHH-cCceeecCC---CCCCHHHHHHHH
Q psy16503 69 KSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEK-AGFGVTLPY---DQITEETVLVAL 144 (244)
Q Consensus 69 ~~~~pq~~lL~h~~~~l~IthgG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~-~G~g~~l~~---~~~~~~~l~~ai 144 (244)
.+|+||.++|.|+.+++||||||+||++||+++|||+|++|+++||+.||+++++ .|+|+.+.. ...+.+++.+++
T Consensus 348 ~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v 427 (477)
T PLN02863 348 RGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFVNASLLVDELKVAVRVCEGADTVPDSDELARVF 427 (477)
T ss_pred cCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeCCccccchhhHHHHHHhhceeEEeccCCCCCcCHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999765 699999843 235789999999
Q ss_pred HHHh-CChhHHHHHHHHHHHHhCC---CCChHHHHHHHHHHHHHc
Q psy16503 145 RTVL-GNPSYKKRAEKVARLFQDR---PMPPLDTAIYWIEHVIRH 185 (244)
Q Consensus 145 ~~ll-~~~~y~~~a~~~s~~~~~~---~~~~~~~a~~~ie~~~~~ 185 (244)
++++ .+++||++|++++++.++- ..+........++.+.+.
T Consensus 428 ~~~m~~~~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~v~~i~~~ 472 (477)
T PLN02863 428 MESVSENQVERERAKELRRAALDAIKERGSSVKDLDGFVKHVVEL 472 (477)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHh
Confidence 9998 6789999999999874431 123344445556665544
No 17
>PLN02210 UDP-glucosyl transferase
Probab=99.97 E-value=2.5e-30 Score=235.07 Aligned_cols=159 Identities=23% Similarity=0.478 Sum_probs=137.6
Q ss_pred HHHHHHhcCC-CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCC----C---CCC--CCCEEEeccCCh
Q psy16503 5 DIKKFLDESV-NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGEN----M---SGK--IDKILLKSWAPQ 74 (244)
Q Consensus 5 ~l~~~l~~~~-~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~----~---~~~--~~nv~~~~~~pq 74 (244)
+..+|+|+.+ +++|||||||... .+.+.+++++.+|+..+.+|+|.++... . .+. +++..+.+|+||
T Consensus 258 ~~~~wld~~~~~svvyvsfGS~~~---~~~~~~~e~a~~l~~~~~~flw~~~~~~~~~~~~~~~~~~~~~~g~v~~w~PQ 334 (456)
T PLN02210 258 CCMEWLDKQARSSVVYISFGSMLE---SLENQVETIAKALKNRGVPFLWVIRPKEKAQNVQVLQEMVKEGQGVVLEWSPQ 334 (456)
T ss_pred HHHHHHhCCCCCceEEEEeccccc---CCHHHHHHHHHHHHhCCCCEEEEEeCCccccchhhHHhhccCCCeEEEecCCH
Confidence 4679999865 6899999999865 6789999999999999999999986421 1 111 355578899999
Q ss_pred hhhhCCCCeeEEEecCChhhHHHHHHhCCcEEecCCCcchhhHHHHHHH-cCceeecCCC----CCCHHHHHHHHHHHhC
Q psy16503 75 RDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEK-AGFGVTLPYD----QITEETVLVALRTVLG 149 (244)
Q Consensus 75 ~~lL~h~~~~l~IthgG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~-~G~g~~l~~~----~~~~~~l~~ai~~ll~ 149 (244)
.++|.|+.+++||||||+||+.||+++|||+|++|+++||+.||+++++ .|+|+.+..+ .++.++|.++|+++|.
T Consensus 335 ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ~~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~ 414 (456)
T PLN02210 335 EKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPIDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTE 414 (456)
T ss_pred HHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEecccccccHHHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999998 7999998642 5899999999999998
Q ss_pred Chh---HHHHHHHHHHHHhC
Q psy16503 150 NPS---YKKRAEKVARLFQD 166 (244)
Q Consensus 150 ~~~---y~~~a~~~s~~~~~ 166 (244)
+++ +|++++++++..+.
T Consensus 415 ~~~g~~~r~~a~~l~~~a~~ 434 (456)
T PLN02210 415 GPAAADIRRRAAELKHVARL 434 (456)
T ss_pred CchHHHHHHHHHHHHHHHHH
Confidence 764 99999988876654
No 18
>PLN00164 glucosyltransferase; Provisional
Probab=99.97 E-value=8.4e-30 Score=233.00 Aligned_cols=160 Identities=23% Similarity=0.471 Sum_probs=134.9
Q ss_pred hHHHHHHhcCC-CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCCC-----------C-CCCCC-----
Q psy16503 4 TDIKKFLDESV-NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENM-----------S-GKIDK----- 65 (244)
Q Consensus 4 ~~l~~~l~~~~-~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~~-----------~-~~~~n----- 65 (244)
+++.+|||+.+ +++|||||||... ++.+.+++++.+|+..+++|+|+++.... . ..|+|
T Consensus 260 ~~~~~wLd~~~~~svvyvsfGS~~~---~~~~q~~ela~gL~~s~~~flWv~~~~~~~~~~~~~~~~~~~~lp~~~~~~~ 336 (480)
T PLN00164 260 HECVRWLDAQPPASVVFLCFGSMGF---FDAPQVREIAAGLERSGHRFLWVLRGPPAAGSRHPTDADLDELLPEGFLERT 336 (480)
T ss_pred HHHHHHHHhCCCCceEEEEeccccc---CCHHHHHHHHHHHHHcCCCEEEEEcCCcccccccccccchhhhCChHHHHHh
Confidence 56899999975 6899999999844 78888999999999999999999874210 0 13333
Q ss_pred ----EEEeccCChhhhhCCCCeeEEEecCChhhHHHHHHhCCcEEecCCCcchhhHHHHHH-HcCceeecCCC-----CC
Q psy16503 66 ----ILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVE-KAGFGVTLPYD-----QI 135 (244)
Q Consensus 66 ----v~~~~~~pq~~lL~h~~~~l~IthgG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~-~~G~g~~l~~~-----~~ 135 (244)
+.+.+|+||.++|.|+.+.+||||||+||+.||+++|||+|++|+++||+.||++++ +.|+|+.+..+ .+
T Consensus 337 ~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~~~~~~gvG~~~~~~~~~~~~~ 416 (480)
T PLN00164 337 KGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLYAEQHLNAFELVADMGVAVAMKVDRKRDNFV 416 (480)
T ss_pred cCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCCccccchhHHHHHHHHhCeEEEeccccccCCcC
Confidence 777899999999999999999999999999999999999999999999999999885 47999998532 36
Q ss_pred CHHHHHHHHHHHhCChh-----HHHHHHHHHHHHhC
Q psy16503 136 TEETVLVALRTVLGNPS-----YKKRAEKVARLFQD 166 (244)
Q Consensus 136 ~~~~l~~ai~~ll~~~~-----y~~~a~~~s~~~~~ 166 (244)
+.++|.++|+++|.+++ +|+++++++++.++
T Consensus 417 ~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~ 452 (480)
T PLN00164 417 EAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRK 452 (480)
T ss_pred cHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHH
Confidence 89999999999997654 57777777766654
No 19
>PLN02764 glycosyltransferase family protein
Probab=99.97 E-value=7.8e-30 Score=230.38 Aligned_cols=178 Identities=22% Similarity=0.292 Sum_probs=148.4
Q ss_pred hHHHHHHhcCC-CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCC--------CCCC------CCCCEEE
Q psy16503 4 TDIKKFLDESV-NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGE--------NMSG------KIDKILL 68 (244)
Q Consensus 4 ~~l~~~l~~~~-~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~--------~~~~------~~~nv~~ 68 (244)
++..+|||+.+ +++|||||||... ++.+.+.++..+|+..+..|+|.+... .+++ ....+.+
T Consensus 245 ~~cl~WLD~q~~~sVvyvsfGS~~~---~~~~q~~ela~gL~~s~~pflwv~r~~~~~~~~~~~lp~~f~~r~~grG~v~ 321 (453)
T PLN02764 245 ERWVKWLSGYEPDSVVFCALGSQVI---LEKDQFQELCLGMELTGSPFLVAVKPPRGSSTIQEALPEGFEERVKGRGVVW 321 (453)
T ss_pred hHHHHHHhCCCCCceEEEeeccccc---CCHHHHHHHHHHHHhCCCCeEEEEeCCCCCcchhhhCCcchHhhhccCCcEE
Confidence 46889999874 8899999999965 788999999999998899999998731 1211 1345677
Q ss_pred eccCChhhhhCCCCeeEEEecCChhhHHHHHHhCCcEEecCCCcchhhHHHHHHH-cCceeecCCC---CCCHHHHHHHH
Q psy16503 69 KSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEK-AGFGVTLPYD---QITEETVLVAL 144 (244)
Q Consensus 69 ~~~~pq~~lL~h~~~~l~IthgG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~-~G~g~~l~~~---~~~~~~l~~ai 144 (244)
.+|+||.++|.|+.+++||||||+||+.||+++|||+|++|++.||+.||+++++ .|+|+.+..+ .++.++|++++
T Consensus 322 ~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av 401 (453)
T PLN02764 322 GGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLLSDELKVSVEVAREETGWFSKESLRDAI 401 (453)
T ss_pred eCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHHHHHHHHHHhceEEEeccccCCccCHHHHHHHH
Confidence 7999999999999999999999999999999999999999999999999999964 7999887543 58999999999
Q ss_pred HHHhCCh-----hHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHc
Q psy16503 145 RTVLGNP-----SYKKRAEKVARLFQDRPMPPLDTAIYWIEHVIRH 185 (244)
Q Consensus 145 ~~ll~~~-----~y~~~a~~~s~~~~~~~~~~~~~a~~~ie~~~~~ 185 (244)
+++|.++ ++|++++++++.+++. .+.-......++++.+.
T Consensus 402 ~~vm~~~~~~g~~~r~~a~~~~~~~~~~-GSS~~~l~~lv~~~~~~ 446 (453)
T PLN02764 402 NSVMKRDSEIGNLVKKNHTKWRETLASP-GLLTGYVDNFIESLQDL 446 (453)
T ss_pred HHHhcCCchhHHHHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHh
Confidence 9999774 2899999999999764 33444555667777665
No 20
>PLN02448 UDP-glycosyltransferase family protein
Probab=99.97 E-value=6.7e-30 Score=233.01 Aligned_cols=160 Identities=24% Similarity=0.442 Sum_probs=138.4
Q ss_pred hHHHHHHhcCC-CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCC--CCCC-CCCCEEEeccCChhhhhC
Q psy16503 4 TDIKKFLDESV-NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGE--NMSG-KIDKILLKSWAPQRDILD 79 (244)
Q Consensus 4 ~~l~~~l~~~~-~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~--~~~~-~~~nv~~~~~~pq~~lL~ 79 (244)
.++.+|+++.+ +++|||||||... ++.+.+++++++|+..+.+|+|++... .+.+ .+.|.++.+|+||.++|.
T Consensus 262 ~~~~~wl~~~~~~~vvyvsfGs~~~---~~~~~~~~~~~~l~~~~~~~lw~~~~~~~~~~~~~~~~~~v~~w~pQ~~iL~ 338 (459)
T PLN02448 262 PDYFQWLDSQPEGSVLYVSLGSFLS---VSSAQMDEIAAGLRDSGVRFLWVARGEASRLKEICGDMGLVVPWCDQLKVLC 338 (459)
T ss_pred hHHHHHHcCCCCCceEEEeeccccc---CCHHHHHHHHHHHHhCCCCEEEEEcCchhhHhHhccCCEEEeccCCHHHHhc
Confidence 37889999875 6899999999864 678899999999999999999987643 2222 235889999999999999
Q ss_pred CCCeeEEEecCChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHc-CceeecCC-----CCCCHHHHHHHHHHHhCCh--
Q psy16503 80 HPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKA-GFGVTLPY-----DQITEETVLVALRTVLGNP-- 151 (244)
Q Consensus 80 h~~~~l~IthgG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~-G~g~~l~~-----~~~~~~~l~~ai~~ll~~~-- 151 (244)
|+.+.+||||||+||+.||+++|||+|++|+++||+.||+++++. |+|+.+.. ..++.++|.++++++|.++
T Consensus 339 h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~ 418 (459)
T PLN02448 339 HSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLESE 418 (459)
T ss_pred cCccceEEecCchhHHHHHHHcCCCEEeccccccchhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCCch
Confidence 999999999999999999999999999999999999999999984 88887742 2468999999999999764
Q ss_pred ---hHHHHHHHHHHHHhC
Q psy16503 152 ---SYKKRAEKVARLFQD 166 (244)
Q Consensus 152 ---~y~~~a~~~s~~~~~ 166 (244)
++|+++++++++.+.
T Consensus 419 ~~~~~r~~a~~~~~~~~~ 436 (459)
T PLN02448 419 EGKEMRRRAKELQEICRG 436 (459)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 689999998887764
No 21
>PLN03015 UDP-glucosyl transferase
Probab=99.97 E-value=6.2e-30 Score=231.79 Aligned_cols=160 Identities=26% Similarity=0.456 Sum_probs=137.5
Q ss_pred hHHHHHHhcCC-CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCC------------CCC-CCCCC----
Q psy16503 4 TDIKKFLDESV-NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGE------------NMS-GKIDK---- 65 (244)
Q Consensus 4 ~~l~~~l~~~~-~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~------------~~~-~~~~n---- 65 (244)
+++.+|||+.+ +++|||||||... ++.+.+++++.+|+..+++|+|++... ... ..|+|
T Consensus 255 ~~~~~WLd~~~~~sVvyvsFGS~~~---~~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~~~~~~~~~~~~lp~~f~er 331 (470)
T PLN03015 255 NSIFEWLDKQGERSVVYVCLGSGGT---LTFEQTVELAWGLELSGQRFVWVLRRPASYLGASSSDDDQVSASLPEGFLDR 331 (470)
T ss_pred HHHHHHHHhCCCCCEEEEECCcCCc---CCHHHHHHHHHHHHhCCCcEEEEEecCccccccccccccchhhcCChHHHHh
Confidence 46999999974 7999999999954 899999999999999999999999621 111 24555
Q ss_pred -----EEEeccCChhhhhCCCCeeEEEecCChhhHHHHHHhCCcEEecCCCcchhhHHHHH-HHcCceeecC----CCCC
Q psy16503 66 -----ILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVV-EKAGFGVTLP----YDQI 135 (244)
Q Consensus 66 -----v~~~~~~pq~~lL~h~~~~l~IthgG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~-~~~G~g~~l~----~~~~ 135 (244)
+.+.+|+||.++|.|+.+.+||||||+||+.||+++||||+++|+++||+.||+++ +..|+|+.+. ...+
T Consensus 332 ~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~~~~~gvg~~~~~~~~~~~v 411 (470)
T PLN03015 332 TRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEEIGVAVRTSELPSEKVI 411 (470)
T ss_pred hccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccccchHHHHHHHHHHhCeeEEecccccCCcc
Confidence 77889999999999999999999999999999999999999999999999999999 5679999985 2357
Q ss_pred CHHHHHHHHHHHhC-----ChhHHHHHHHHHHHHhC
Q psy16503 136 TEETVLVALRTVLG-----NPSYKKRAEKVARLFQD 166 (244)
Q Consensus 136 ~~~~l~~ai~~ll~-----~~~y~~~a~~~s~~~~~ 166 (244)
+.+++.++|+++|. ....|++|++++++.+.
T Consensus 412 ~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~ 447 (470)
T PLN03015 412 GREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSER 447 (470)
T ss_pred CHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHH
Confidence 89999999999994 24678888888776654
No 22
>PLN02173 UDP-glucosyl transferase family protein
Probab=99.97 E-value=3.1e-29 Score=226.78 Aligned_cols=156 Identities=24% Similarity=0.457 Sum_probs=132.1
Q ss_pred HHHHHHhcCC-CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCC---CCCC------CCCCEEEeccCCh
Q psy16503 5 DIKKFLDESV-NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGE---NMSG------KIDKILLKSWAPQ 74 (244)
Q Consensus 5 ~l~~~l~~~~-~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~---~~~~------~~~nv~~~~~~pq 74 (244)
+..+||++.+ +++|||||||... ++.+.+.+++.+|. +..|+|++... .+++ .++|+++.+|+||
T Consensus 253 ~c~~WLd~~~~~svvyvsfGS~~~---~~~~~~~ela~gLs--~~~flWvvr~~~~~~lp~~~~~~~~~~~~~i~~W~PQ 327 (449)
T PLN02173 253 LCTDWLDKRPQGSVVYIAFGSMAK---LSSEQMEEIASAIS--NFSYLWVVRASEESKLPPGFLETVDKDKSLVLKWSPQ 327 (449)
T ss_pred HHHHHHhcCCCCceEEEEeccccc---CCHHHHHHHHHHhc--CCCEEEEEeccchhcccchHHHhhcCCceEEeCCCCH
Confidence 4789999876 6799999999864 78899999999994 45699998631 1221 1578999999999
Q ss_pred hhhhCCCCeeEEEecCChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHc-CceeecCCC----CCCHHHHHHHHHHHhC
Q psy16503 75 RDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKA-GFGVTLPYD----QITEETVLVALRTVLG 149 (244)
Q Consensus 75 ~~lL~h~~~~l~IthgG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~-G~g~~l~~~----~~~~~~l~~ai~~ll~ 149 (244)
.++|.|+.+.+||||||+||+.||+++|||+|++|+++||+.||+++++. |+|+.+..+ .++.+++.++++++|.
T Consensus 328 ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~ 407 (449)
T PLN02173 328 LQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVME 407 (449)
T ss_pred HHHhCCCccceEEecCccchHHHHHHcCCCEEecCchhcchHHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999986 888887543 2589999999999997
Q ss_pred Ch---hHHHHHHHHHHHHh
Q psy16503 150 NP---SYKKRAEKVARLFQ 165 (244)
Q Consensus 150 ~~---~y~~~a~~~s~~~~ 165 (244)
++ .+|+++++++++.+
T Consensus 408 ~~~~~~~r~~a~~~~~~a~ 426 (449)
T PLN02173 408 GEKSKEMKENAGKWRDLAV 426 (449)
T ss_pred CChHHHHHHHHHHHHHHHH
Confidence 74 45777777766655
No 23
>PLN00414 glycosyltransferase family protein
Probab=99.97 E-value=2.9e-29 Score=227.32 Aligned_cols=179 Identities=20% Similarity=0.287 Sum_probs=146.0
Q ss_pred hHHHHHHhcCC-CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCC----C-CCCCC---------CCEEE
Q psy16503 4 TDIKKFLDESV-NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGE----N-MSGKI---------DKILL 68 (244)
Q Consensus 4 ~~l~~~l~~~~-~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~----~-~~~~~---------~nv~~ 68 (244)
++..+|||+.+ +.+|||||||... ++.+.+.++...|+..+..|+|.+... . ....| ....+
T Consensus 240 ~~~~~WLD~q~~~sVvyvsfGS~~~---~~~~q~~e~a~gL~~s~~~Flwvvr~~~~~~~~~~~lp~~f~~r~~~~g~vv 316 (446)
T PLN00414 240 DRWNHWLNGFEPGSVVFCAFGTQFF---FEKDQFQEFCLGMELTGLPFLIAVMPPKGSSTVQEALPEGFEERVKGRGIVW 316 (446)
T ss_pred HHHHHHHhcCCCCceEEEeeccccc---CCHHHHHHHHHHHHHcCCCeEEEEecCCCcccchhhCChhHHHHhcCCCeEE
Confidence 35789999875 7899999999965 778889999999999999999998641 1 01123 34566
Q ss_pred eccCChhhhhCCCCeeEEEecCChhhHHHHHHhCCcEEecCCCcchhhHHHHHH-HcCceeecCCC---CCCHHHHHHHH
Q psy16503 69 KSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVE-KAGFGVTLPYD---QITEETVLVAL 144 (244)
Q Consensus 69 ~~~~pq~~lL~h~~~~l~IthgG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~-~~G~g~~l~~~---~~~~~~l~~ai 144 (244)
.+|+||.++|.|+.+++||||||+||+.||+++|||+|++|++.||+.||++++ +.|+|+.+..+ .++.+++.+++
T Consensus 317 ~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v 396 (446)
T PLN00414 317 EGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLLTEELEVSVKVQREDSGWFSKESLRDTV 396 (446)
T ss_pred eccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHHHHHHHHhCeEEEeccccCCccCHHHHHHHH
Confidence 799999999999999999999999999999999999999999999999999996 57999999643 38999999999
Q ss_pred HHHhCChh-----HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcC
Q psy16503 145 RTVLGNPS-----YKKRAEKVARLFQDRPMPPLDTAIYWIEHVIRHG 186 (244)
Q Consensus 145 ~~ll~~~~-----y~~~a~~~s~~~~~~~~~~~~~a~~~ie~~~~~~ 186 (244)
+++|.+++ +|++++++++.+.+...+ .......++.+.+..
T Consensus 397 ~~~m~~~~e~g~~~r~~a~~~~~~~~~~gg~-ss~l~~~v~~~~~~~ 442 (446)
T PLN00414 397 KSVMDKDSEIGNLVKRNHKKLKETLVSPGLL-SGYADKFVEALENEV 442 (446)
T ss_pred HHHhcCChhhHHHHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHhc
Confidence 99997643 899999999888663221 333455666665443
No 24
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=99.96 E-value=6.2e-29 Score=223.07 Aligned_cols=167 Identities=31% Similarity=0.523 Sum_probs=153.9
Q ss_pred CCCceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCC--CCCCCCCEEEeccCChhhhhCCCCeeEEEecC
Q psy16503 13 SVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGEN--MSGKIDKILLKSWAPQRDILDHPNVKVFISHG 90 (244)
Q Consensus 13 ~~~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~--~~~~~~nv~~~~~~pq~~lL~h~~~~l~Ithg 90 (244)
.++++||+|+||.... .++++.+++++..++.+||...++.+ ..+.|.|+.+.+|+||..++ +++++|||||
T Consensus 235 ~d~~~vyvslGt~~~~----~~l~~~~~~a~~~l~~~vi~~~~~~~~~~~~~p~n~~v~~~~p~~~~l--~~ad~vI~hG 308 (406)
T COG1819 235 ADRPIVYVSLGTVGNA----VELLAIVLEALADLDVRVIVSLGGARDTLVNVPDNVIVADYVPQLELL--PRADAVIHHG 308 (406)
T ss_pred CCCCeEEEEcCCcccH----HHHHHHHHHHHhcCCcEEEEeccccccccccCCCceEEecCCCHHHHh--hhcCEEEecC
Confidence 4579999999999642 78999999999999999999887622 45789999999999999999 8999999999
Q ss_pred ChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCChhHHHHHHHHHHHHhCCCCC
Q psy16503 91 GFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSYKKRAEKVARLFQDRPMP 170 (244)
Q Consensus 91 G~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~~y~~~a~~~s~~~~~~~~~ 170 (244)
|+||++||+++|||++++|...||+.||.++++.|.|+.+..+.++.+.|.++|+++|+|+.|+++++++++.++. ..
T Consensus 309 G~gtt~eaL~~gvP~vv~P~~~DQ~~nA~rve~~G~G~~l~~~~l~~~~l~~av~~vL~~~~~~~~~~~~~~~~~~--~~ 386 (406)
T COG1819 309 GAGTTSEALYAGVPLVVIPDGADQPLNAERVEELGAGIALPFEELTEERLRAAVNEVLADDSYRRAAERLAEEFKE--ED 386 (406)
T ss_pred CcchHHHHHHcCCCEEEecCCcchhHHHHHHHHcCCceecCcccCCHHHHHHHHHHHhcCHHHHHHHHHHHHHhhh--cc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999987 66
Q ss_pred hHHHHHHHHHHHHHcCC
Q psy16503 171 PLDTAIYWIEHVIRHGG 187 (244)
Q Consensus 171 ~~~~a~~~ie~~~~~~~ 187 (244)
+.+.+++++|...+.++
T Consensus 387 g~~~~a~~le~~~~~~~ 403 (406)
T COG1819 387 GPAKAADLLEEFAREKK 403 (406)
T ss_pred cHHHHHHHHHHHHhccc
Confidence 78889999999887643
No 25
>PLN02534 UDP-glycosyltransferase
Probab=99.95 E-value=2.6e-27 Score=216.26 Aligned_cols=176 Identities=25% Similarity=0.432 Sum_probs=142.3
Q ss_pred HHHHHHhcCC-CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCC-------C--CC-----C-CCCCEEE
Q psy16503 5 DIKKFLDESV-NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGE-------N--MS-----G-KIDKILL 68 (244)
Q Consensus 5 ~l~~~l~~~~-~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~-------~--~~-----~-~~~nv~~ 68 (244)
+..+|||+.+ +++|||||||... ++.+.+.+++.+|+..+++|+|+++.. . ++ . .+.++++
T Consensus 272 ~cl~wLd~~~~~sVvyvsfGS~~~---~~~~q~~e~a~gl~~~~~~flW~~r~~~~~~~~~~~~~p~gf~~~~~~~g~~v 348 (491)
T PLN02534 272 QCLEWLDSMKPRSVIYACLGSLCR---LVPSQLIELGLGLEASKKPFIWVIKTGEKHSELEEWLVKENFEERIKGRGLLI 348 (491)
T ss_pred HHHHHHhcCCCCceEEEEeccccc---CCHHHHHHHHHHHHhCCCCEEEEEecCccccchhhhcCchhhHHhhccCCeec
Confidence 5779999986 6999999999964 778889999999999999999999831 0 11 1 3568888
Q ss_pred eccCChhhhhCCCCeeEEEecCChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHc-CceeecCC---------C----C
Q psy16503 69 KSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKA-GFGVTLPY---------D----Q 134 (244)
Q Consensus 69 ~~~~pq~~lL~h~~~~l~IthgG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~-G~g~~l~~---------~----~ 134 (244)
.+|+||.++|.|+.+.+||||||+||++||+++|||+|++|++.||+.||+++++. |+|+.+.. + .
T Consensus 349 ~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~ 428 (491)
T PLN02534 349 KGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVL 428 (491)
T ss_pred cCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCEEeccccccHHHHHHHHHHhhcceEEecccccccccccccccCc
Confidence 99999999999999999999999999999999999999999999999999999744 88887631 1 2
Q ss_pred CCHHHHHHHHHHHhC-----ChhHHHHHHHHHHHHhCC---CCChHHHHHHHHHHHH
Q psy16503 135 ITEETVLVALRTVLG-----NPSYKKRAEKVARLFQDR---PMPPLDTAIYWIEHVI 183 (244)
Q Consensus 135 ~~~~~l~~ai~~ll~-----~~~y~~~a~~~s~~~~~~---~~~~~~~a~~~ie~~~ 183 (244)
++.+++.++|+++|. ..++|++|++++++.+.- ..++.......|+.+.
T Consensus 429 v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~Av~~GGSS~~nl~~fv~~i~ 485 (491)
T PLN02534 429 VKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARKAMELGGSSHINLSILIQDVL 485 (491)
T ss_pred cCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 689999999999995 257899999988766542 1233333444455444
No 26
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=99.95 E-value=6.5e-27 Score=209.82 Aligned_cols=171 Identities=26% Similarity=0.375 Sum_probs=147.3
Q ss_pred chHHHHHHhcCCCceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCCC--CCCCCCEEEeccCChhhhhCC
Q psy16503 3 ETDIKKFLDESVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENM--SGKIDKILLKSWAPQRDILDH 80 (244)
Q Consensus 3 p~~l~~~l~~~~~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~~--~~~~~nv~~~~~~pq~~lL~h 80 (244)
++++..|++.. +++|||++||... ..+....+.+++++...+.+++|..+.... ...++|+++.+|+|+.++|
T Consensus 228 ~~~~~~~~~~~-~~~v~v~~Gs~~~--~~~~~~~~~~~~a~~~~~~~~i~~~g~~~~~~~~~~~~v~~~~~~p~~~ll-- 302 (401)
T cd03784 228 PPELWLFLAAG-RPPVYVGFGSMVV--RDPEALARLDVEAVATLGQRAILSLGWGGLGAEDLPDNVRVVDFVPHDWLL-- 302 (401)
T ss_pred CHHHHHHHhCC-CCcEEEeCCCCcc--cCHHHHHHHHHHHHHHcCCeEEEEccCccccccCCCCceEEeCCCCHHHHh--
Confidence 35678888764 5899999999853 245678889999999888899999886432 2467899999999999999
Q ss_pred CCeeEEEecCChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCChhHHHHHHHH
Q psy16503 81 PNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSYKKRAEKV 160 (244)
Q Consensus 81 ~~~~l~IthgG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~~y~~~a~~~ 160 (244)
+.|++||||||+||++||+++|||+|++|...||+.||+++++.|+|+.++..+++.++|.+++++++++ .+++++.+.
T Consensus 303 ~~~d~~I~hgG~~t~~eal~~GvP~v~~P~~~dQ~~~a~~~~~~G~g~~l~~~~~~~~~l~~al~~~l~~-~~~~~~~~~ 381 (401)
T cd03784 303 PRCAAVVHHGGAGTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGPALDPRELTAERLAAALRRLLDP-PSRRRAAAL 381 (401)
T ss_pred hhhheeeecCCchhHHHHHHcCCCEEeeCCCCCcHHHHHHHHHCCCCCCCCcccCCHHHHHHHHHHHhCH-HHHHHHHHH
Confidence 7799999999999999999999999999999999999999999999999998888999999999999975 466667777
Q ss_pred HHHHhCCCCChHHHHHHHHHH
Q psy16503 161 ARLFQDRPMPPLDTAIYWIEH 181 (244)
Q Consensus 161 s~~~~~~~~~~~~~a~~~ie~ 181 (244)
.+.++. .++.+.+++.||.
T Consensus 382 ~~~~~~--~~g~~~~~~~ie~ 400 (401)
T cd03784 382 LRRIRE--EDGVPSAADVIER 400 (401)
T ss_pred HHHHHh--ccCHHHHHHHHhh
Confidence 777765 6788999888874
No 27
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=99.95 E-value=6.8e-27 Score=209.40 Aligned_cols=170 Identities=25% Similarity=0.445 Sum_probs=149.3
Q ss_pred HHHhc-CCCceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCC----CCCCCCCCEEEeccCChhhhhCCCC
Q psy16503 8 KFLDE-SVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGE----NMSGKIDKILLKSWAPQRDILDHPN 82 (244)
Q Consensus 8 ~~l~~-~~~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~----~~~~~~~nv~~~~~~pq~~lL~h~~ 82 (244)
.|.+. .++++||||+||... ...+.++.+++++.+.+.+++|..+.. .+...++|+.+.+|+|+.++| +.
T Consensus 217 ~~~~~~~~~~~v~vs~Gs~~~---~~~~~~~~~~~al~~~~~~~i~~~g~~~~~~~~~~~~~~v~~~~~~p~~~ll--~~ 291 (392)
T TIGR01426 217 SWERPGDGRPVVLISLGTVFN---NQPSFYRTCVEAFRDLDWHVVLSVGRGVDPADLGELPPNVEVRQWVPQLEIL--KK 291 (392)
T ss_pred CCCCCCCCCCEEEEecCccCC---CCHHHHHHHHHHHhcCCCeEEEEECCCCChhHhccCCCCeEEeCCCCHHHHH--hh
Confidence 35544 347899999999743 234588899999999998999887653 233467899999999999999 67
Q ss_pred eeEEEecCChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCChhHHHHHHHHHH
Q psy16503 83 VKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSYKKRAEKVAR 162 (244)
Q Consensus 83 ~~l~IthgG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~~y~~~a~~~s~ 162 (244)
++++|||||.||+.||+++|+|+|++|...||..||+++++.|+|+.+...+++.++|.++|+++++|++|+++++++++
T Consensus 292 ~~~~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~~g~g~~l~~~~~~~~~l~~ai~~~l~~~~~~~~~~~l~~ 371 (392)
T TIGR01426 292 ADAFITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAELGLGRHLPPEEVTAEKLREAVLAVLSDPRYAERLRKMRA 371 (392)
T ss_pred CCEEEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHHCCCEEEeccccCCHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred HHhCCCCChHHHHHHHHHHHHH
Q psy16503 163 LFQDRPMPPLDTAIYWIEHVIR 184 (244)
Q Consensus 163 ~~~~~~~~~~~~a~~~ie~~~~ 184 (244)
.+.. .++.+.++++++.+++
T Consensus 372 ~~~~--~~~~~~aa~~i~~~~~ 391 (392)
T TIGR01426 372 EIRE--AGGARRAADEIEGFLA 391 (392)
T ss_pred HHHH--cCCHHHHHHHHHHhhc
Confidence 9987 6688999999998764
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.73 E-value=1.5e-16 Score=140.87 Aligned_cols=154 Identities=21% Similarity=0.264 Sum_probs=113.2
Q ss_pred CCceEEEEcCCCCCCCCCCHHHHHHHHHHHhcC--CCeEEEEecCCCCCC---CCCCEEEeccC-Chh-hhhCCCCeeEE
Q psy16503 14 VNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQI--PQRVIWKWEGENMSG---KIDKILLKSWA-PQR-DILDHPNVKVF 86 (244)
Q Consensus 14 ~~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~--~~~viw~~~~~~~~~---~~~nv~~~~~~-pq~-~lL~h~~~~l~ 86 (244)
++++|+|..||... ..+-+.+.+++..+ +.+++|.+|.+.... ...++...+|+ +.+ +++ ..+|++
T Consensus 184 ~~~~iLv~GGS~Ga-----~~in~~~~~~l~~l~~~~~vv~~~G~~~~~~~~~~~~~~~~~~f~~~~m~~~~--~~adlv 256 (352)
T PRK12446 184 KKPVITIMGGSLGA-----KKINETVREALPELLLKYQIVHLCGKGNLDDSLQNKEGYRQFEYVHGELPDIL--AITDFV 256 (352)
T ss_pred CCcEEEEECCccch-----HHHHHHHHHHHHhhccCcEEEEEeCCchHHHHHhhcCCcEEecchhhhHHHHH--HhCCEE
Confidence 36799999999853 22223333333332 368999998643221 11355667887 434 667 789999
Q ss_pred EecCChhhHHHHHHhCCcEEecCCC-----cchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCCh-hHHHHHHHH
Q psy16503 87 ISHGGFLGTTEALYSGVPIIGIPMF-----GDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNP-SYKKRAEKV 160 (244)
Q Consensus 87 IthgG~~s~~Eal~~gvP~i~vP~~-----~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~-~y~~~a~~~ 160 (244)
|||||.+|+.|++++|+|+|++|+. +||..||+.+++.|+|..+..++++.+.|.+++.++++|+ .|++++++
T Consensus 257 Isr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l~~~g~~~~l~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~- 335 (352)
T PRK12446 257 ISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESFERQGYASVLYEEDVTVNSLIKHVEELSHNNEKYKTALKK- 335 (352)
T ss_pred EECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHHHHCCCEEEcchhcCCHHHHHHHHHHHHcCHHHHHHHHHH-
Confidence 9999999999999999999999985 4899999999999999999989999999999999999886 44443333
Q ss_pred HHHHhCCCCChHHHHHHHHH
Q psy16503 161 ARLFQDRPMPPLDTAIYWIE 180 (244)
Q Consensus 161 s~~~~~~~~~~~~~a~~~ie 180 (244)
+.. .++.+..+++++
T Consensus 336 ---~~~--~~aa~~i~~~i~ 350 (352)
T PRK12446 336 ---YNG--KEAIQTIIDHIS 350 (352)
T ss_pred ---cCC--CCHHHHHHHHHH
Confidence 332 355666666554
No 29
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.73 E-value=2.3e-16 Score=139.09 Aligned_cols=162 Identities=20% Similarity=0.214 Sum_probs=126.4
Q ss_pred CCceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCC--CeEEEEecCCCCCC-----CCCC-EEEeccCChhhhhCCCCeeE
Q psy16503 14 VNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIP--QRVIWKWEGENMSG-----KIDK-ILLKSWAPQRDILDHPNVKV 85 (244)
Q Consensus 14 ~~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~--~~viw~~~~~~~~~-----~~~n-v~~~~~~pq~~lL~h~~~~l 85 (244)
++++|+|..||... ..+.+.+.+++..+. ..+++.++.+.+.. ...+ +.+.+|.+++..+. ..+|+
T Consensus 182 ~~~~ilV~GGS~Ga-----~~ln~~v~~~~~~l~~~~~v~~~~G~~~~~~~~~~~~~~~~~~v~~f~~dm~~~~-~~ADL 255 (357)
T COG0707 182 DKKTILVTGGSQGA-----KALNDLVPEALAKLANRIQVIHQTGKNDLEELKSAYNELGVVRVLPFIDDMAALL-AAADL 255 (357)
T ss_pred CCcEEEEECCcchh-----HHHHHHHHHHHHHhhhCeEEEEEcCcchHHHHHHHHhhcCcEEEeeHHhhHHHHH-HhccE
Confidence 46899999999954 333444444444444 58899888753211 1112 88899987775443 89999
Q ss_pred EEecCChhhHHHHHHhCCcEEecCCC----cchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCChhHHHHHHHHH
Q psy16503 86 FISHGGFLGTTEALYSGVPIIGIPMF----GDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSYKKRAEKVA 161 (244)
Q Consensus 86 ~IthgG~~s~~Eal~~gvP~i~vP~~----~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~~y~~~a~~~s 161 (244)
+||++|.+|+.|++++|+|+|.+|.. +||..||..++++|+|.+++..++|.+++.+.|.++++++.-.++|.+.+
T Consensus 256 vIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~~~gaa~~i~~~~lt~~~l~~~i~~l~~~~~~l~~m~~~a 335 (357)
T COG0707 256 VISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKAGAALVIRQSELTPEKLAELILRLLSNPEKLKAMAENA 335 (357)
T ss_pred EEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHHhCCCEEEeccccCCHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999999999999999999973 48999999999999999999999999999999999999988788888888
Q ss_pred HHHhCCCCChHHHHHHHHHHHH
Q psy16503 162 RLFQDRPMPPLDTAIYWIEHVI 183 (244)
Q Consensus 162 ~~~~~~~~~~~~~a~~~ie~~~ 183 (244)
+.+.. .++.++.++.++...
T Consensus 336 ~~~~~--p~aa~~i~~~~~~~~ 355 (357)
T COG0707 336 KKLGK--PDAAERIADLLLALA 355 (357)
T ss_pred HhcCC--CCHHHHHHHHHHHHh
Confidence 87765 455666666665543
No 30
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.72 E-value=6.7e-19 Score=139.77 Aligned_cols=136 Identities=24% Similarity=0.306 Sum_probs=99.3
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHH---HHHHhcC--CCeEEEEecCCC-------CCCCCCCEEEeccCC-hhhhhCCCCe
Q psy16503 17 VIYFSMGSIIQGKSFPSDKRKAF---LRAFEQI--PQRVIWKWEGEN-------MSGKIDKILLKSWAP-QRDILDHPNV 83 (244)
Q Consensus 17 vI~vs~Gs~~~~~~~~~~~~~~i---~~al~~~--~~~viw~~~~~~-------~~~~~~nv~~~~~~p-q~~lL~h~~~ 83 (244)
+|+|+.||... ..+.+.+ .+.+... +.+|++.+|... ..+.+.|+.+.+|.+ ..+++ ..+
T Consensus 1 tilv~gGs~g~-----~~l~~~v~~~~~~~~~~~~~~~viv~~G~~~~~~~~~~~~~~~~~v~~~~~~~~m~~~m--~~a 73 (167)
T PF04101_consen 1 TILVTGGSQGA-----RDLNRLVLKILELLAEKHKNIQVIVQTGKNNYEELKIKVENFNPNVKVFGFVDNMAELM--AAA 73 (167)
T ss_dssp -EEEEETTTSH-----HHHHCCCCCHHHHHHHHHHHCCCCCCCTTCECHHHCCCHCCTTCCCEEECSSSSHHHHH--HHH
T ss_pred CEEEEECCCCH-----HHHHHHHHHHHHHHhhcCCCcEEEEEECCCcHHHHHHHHhccCCcEEEEechhhHHHHH--HHc
Confidence 58999998843 1222222 2222221 357899888632 122337899999999 55666 889
Q ss_pred eEEEecCChhhHHHHHHhCCcEEecCCCc----chhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCChhHHHHHHH
Q psy16503 84 KVFISHGGFLGTTEALYSGVPIIGIPMFG----DQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSYKKRAEK 159 (244)
Q Consensus 84 ~l~IthgG~~s~~Eal~~gvP~i~vP~~~----dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~~y~~~a~~ 159 (244)
|++|||||.+|++|++++|+|+|++|... +|..||..+++.|+|+.+...+.+.++|.++|.+++.++.++..+.+
T Consensus 74 DlvIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~~g~~~~~~~~~~~~~~L~~~i~~l~~~~~~~~~~~~ 153 (167)
T PF04101_consen 74 DLVISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAKKGAAIMLDESELNPEELAEAIEELLSDPEKLKEMAK 153 (167)
T ss_dssp SEEEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHHCCCCCCSECCC-SCCCHHHHHHCHCCCHH-SHHHCC
T ss_pred CEEEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHHcCCccccCcccCCHHHHHHHHHHHHcCcHHHHHHHH
Confidence 99999999999999999999999999987 99999999999999999998888889999999999998776444433
No 31
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.69 E-value=2.7e-16 Score=136.75 Aligned_cols=122 Identities=22% Similarity=0.357 Sum_probs=102.8
Q ss_pred CCceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCC-CeEEEEecCCCCCCCCCCEEEeccC--ChhhhhCCCCeeEEEecC
Q psy16503 14 VNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIP-QRVIWKWEGENMSGKIDKILLKSWA--PQRDILDHPNVKVFISHG 90 (244)
Q Consensus 14 ~~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~-~~viw~~~~~~~~~~~~nv~~~~~~--pq~~lL~h~~~~l~Ithg 90 (244)
+++.|+|++|+... . .+.++++..+ .++++. +.......++|+.+.++. +..++| +.+|++||||
T Consensus 191 ~~~~iLv~~gg~~~-----~----~~~~~l~~~~~~~~~v~-g~~~~~~~~~ni~~~~~~~~~~~~~m--~~ad~vIs~~ 258 (318)
T PF13528_consen 191 DEPKILVYFGGGGP-----G----DLIEALKALPDYQFIVF-GPNAADPRPGNIHVRPFSTPDFAELM--AAADLVISKG 258 (318)
T ss_pred CCCEEEEEeCCCcH-----H----HHHHHHHhCCCCeEEEE-cCCcccccCCCEEEeecChHHHHHHH--HhCCEEEECC
Confidence 36789999999943 2 5677777777 466665 543333458899999986 455788 8899999999
Q ss_pred ChhhHHHHHHhCCcEEecCC--CcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHH
Q psy16503 91 GFLGTTEALYSGVPIIGIPM--FGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTV 147 (244)
Q Consensus 91 G~~s~~Eal~~gvP~i~vP~--~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~l 147 (244)
|++|++|++++|+|++++|. +.||..||+.+++.|+|+.++.++++++.|.++|+++
T Consensus 259 G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~~G~~~~~~~~~~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 259 GYTTISEALALGKPALVIPRPGQDEQEYNARKLEELGLGIVLSQEDLTPERLAEFLERL 317 (318)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHHCCCeEEcccccCCHHHHHHHHhcC
Confidence 99999999999999999999 7899999999999999999999999999999999875
No 32
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.68 E-value=5.1e-16 Score=135.76 Aligned_cols=126 Identities=25% Similarity=0.404 Sum_probs=98.0
Q ss_pred CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCC-eEEEEecCCCCCCCCCCEEEeccCC--hhhhhCCCCeeEEEecCC
Q psy16503 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQ-RVIWKWEGENMSGKIDKILLKSWAP--QRDILDHPNVKVFISHGG 91 (244)
Q Consensus 15 ~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~-~viw~~~~~~~~~~~~nv~~~~~~p--q~~lL~h~~~~l~IthgG 91 (244)
++.|+|.+|+.. .+.+++++.+.++ .+++...+......++|+.+.+|.| ..+.| +.|+++|||||
T Consensus 188 ~~~iLv~~g~~~---------~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~v~~~~~~~~~~~~~l--~~ad~vI~~~G 256 (321)
T TIGR00661 188 EDYILVYIGFEY---------RYKILELLGKIANVKFVCYSYEVAKNSYNENVEIRRITTDNFKELI--KNAELVITHGG 256 (321)
T ss_pred CCcEEEECCcCC---------HHHHHHHHHhCCCeEEEEeCCCCCccccCCCEEEEECChHHHHHHH--HhCCEEEECCC
Confidence 477889988762 2445777877765 5552211111234568999999987 34566 89999999999
Q ss_pred hhhHHHHHHhCCcEEecCCCc--chhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCChhHH
Q psy16503 92 FLGTTEALYSGVPIIGIPMFG--DQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSYK 154 (244)
Q Consensus 92 ~~s~~Eal~~gvP~i~vP~~~--dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~~y~ 154 (244)
.+|++||+++|+|++++|..+ ||..||+.+++.|+|+.++..++ ++.+++.++++|+.|.
T Consensus 257 ~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~~g~~~~l~~~~~---~~~~~~~~~~~~~~~~ 318 (321)
T TIGR00661 257 FSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEYKEL---RLLEAILDIRNMKRYK 318 (321)
T ss_pred hHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHHCCCEEEcChhhH---HHHHHHHhcccccccc
Confidence 999999999999999999954 89999999999999999987765 6777888888887764
No 33
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.61 E-value=2.9e-14 Score=126.03 Aligned_cols=160 Identities=19% Similarity=0.227 Sum_probs=121.9
Q ss_pred CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCC--eEEEEecCCC-------CCCCCCCEEEeccCC-hhhhhCCCCee
Q psy16503 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQ--RVIWKWEGEN-------MSGKIDKILLKSWAP-QRDILDHPNVK 84 (244)
Q Consensus 15 ~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~--~viw~~~~~~-------~~~~~~nv~~~~~~p-q~~lL~h~~~~ 84 (244)
.++|++..|+.. .......+.+++.++.. .++|.+|+.. .. .+-++.+.+|.+ ..+++ +.+|
T Consensus 183 ~~~i~~~gg~~~-----~~~~~~~l~~a~~~~~~~~~~~~~~G~g~~~~~~~~~~-~~~~v~~~g~~~~~~~~~--~~~d 254 (357)
T PRK00726 183 KPTLLVVGGSQG-----ARVLNEAVPEALALLPEALQVIHQTGKGDLEEVRAAYA-AGINAEVVPFIDDMAAAY--AAAD 254 (357)
T ss_pred CeEEEEECCcHh-----HHHHHHHHHHHHHHhhhCcEEEEEcCCCcHHHHHHHhh-cCCcEEEeehHhhHHHHH--HhCC
Confidence 456666555542 12223333366655543 5567777521 11 222488899984 45777 8999
Q ss_pred EEEecCChhhHHHHHHhCCcEEecCC----CcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCChhHHHHHHHH
Q psy16503 85 VFISHGGFLGTTEALYSGVPIIGIPM----FGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSYKKRAEKV 160 (244)
Q Consensus 85 l~IthgG~~s~~Eal~~gvP~i~vP~----~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~~y~~~a~~~ 160 (244)
++|+|+|.++++||+++|+|+|++|. .+||..|+..+.+.|.|..+..++++++.|.++|+++++|+++++++.+.
T Consensus 255 ~~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~~~~~~~~~~~ 334 (357)
T PRK00726 255 LVICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLSDPERLEAMAEA 334 (357)
T ss_pred EEEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 99999999999999999999999997 46899999999999999999888888999999999999999999999999
Q ss_pred HHHHhCCCCChHHHHHHHHHHHHH
Q psy16503 161 ARLFQDRPMPPLDTAIYWIEHVIR 184 (244)
Q Consensus 161 s~~~~~~~~~~~~~a~~~ie~~~~ 184 (244)
++.+.+ ..+.++++..++.++|
T Consensus 335 ~~~~~~--~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 335 ARALGK--PDAAERLADLIEELAR 356 (357)
T ss_pred HHhcCC--cCHHHHHHHHHHHHhh
Confidence 888865 4667777777766654
No 34
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.43 E-value=3.5e-12 Score=112.00 Aligned_cols=153 Identities=22% Similarity=0.225 Sum_probs=110.9
Q ss_pred CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcC---CCeEEEEecCCCC-------CCCCCCEEEeccC-ChhhhhCCCCe
Q psy16503 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQI---PQRVIWKWEGENM-------SGKIDKILLKSWA-PQRDILDHPNV 83 (244)
Q Consensus 15 ~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~---~~~viw~~~~~~~-------~~~~~nv~~~~~~-pq~~lL~h~~~ 83 (244)
+.+|++..|+.. .....+.+.+++..+ +..+++.+|.... ....+|+.+.+|. +..++| +.+
T Consensus 181 ~~~i~~~~g~~~-----~~~~~~~l~~a~~~l~~~~~~~~~i~G~g~~~~l~~~~~~~~~~v~~~g~~~~~~~~l--~~a 253 (350)
T cd03785 181 KPTLLVFGGSQG-----ARAINEAVPEALAELLRKRLQVIHQTGKGDLEEVKKAYEELGVNYEVFPFIDDMAAAY--AAA 253 (350)
T ss_pred CeEEEEECCcHh-----HHHHHHHHHHHHHHhhccCeEEEEEcCCccHHHHHHHHhccCCCeEEeehhhhHHHHH--Hhc
Confidence 345555555552 122222233444433 2355666665311 1124689999998 445677 789
Q ss_pred eEEEecCChhhHHHHHHhCCcEEecCC----CcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCChhHHHHHHH
Q psy16503 84 KVFISHGGFLGTTEALYSGVPIIGIPM----FGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSYKKRAEK 159 (244)
Q Consensus 84 ~l~IthgG~~s~~Eal~~gvP~i~vP~----~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~~y~~~a~~ 159 (244)
|++|+++|.+++.||+++|+|++++|. .++|..|+..+.+.|.|..++.++.+.+++.++|+++++|+..++.+.+
T Consensus 254 d~~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~~~~~~~~~~ 333 (350)
T cd03785 254 DLVISRAGASTVAELAALGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLSDPERLKAMAE 333 (350)
T ss_pred CEEEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999999999999999999999985 4689999999999999999987767899999999999999888888888
Q ss_pred HHHHHhCCCCChHHHHH
Q psy16503 160 VARLFQDRPMPPLDTAI 176 (244)
Q Consensus 160 ~s~~~~~~~~~~~~~a~ 176 (244)
.+..... ..+.++++
T Consensus 334 ~~~~~~~--~~~~~~i~ 348 (350)
T cd03785 334 AARSLAR--PDAAERIA 348 (350)
T ss_pred HHHhcCC--CCHHHHHH
Confidence 7776654 34455544
No 35
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.42 E-value=2.1e-11 Score=109.53 Aligned_cols=157 Identities=15% Similarity=0.185 Sum_probs=114.6
Q ss_pred CceEEEEcCCCCCCCCCCHHHHHHHHHHH-hcCC-CeEEEEecCCC-----C---CCCCCCEEEeccCChh-hhhCCCCe
Q psy16503 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAF-EQIP-QRVIWKWEGEN-----M---SGKIDKILLKSWAPQR-DILDHPNV 83 (244)
Q Consensus 15 ~~vI~vs~Gs~~~~~~~~~~~~~~i~~al-~~~~-~~viw~~~~~~-----~---~~~~~nv~~~~~~pq~-~lL~h~~~ 83 (244)
+++|++..|+... ...+..+++++ +..+ .++++.+|++. + ....+++.+.+|.++. +++ ..+
T Consensus 202 ~~~ilv~~G~lg~-----~k~~~~li~~~~~~~~~~~~vvv~G~~~~l~~~l~~~~~~~~~v~~~G~~~~~~~~~--~~a 274 (391)
T PRK13608 202 KQTILMSAGAFGV-----SKGFDTMITDILAKSANAQVVMICGKSKELKRSLTAKFKSNENVLILGYTKHMNEWM--ASS 274 (391)
T ss_pred CCEEEEECCCccc-----chhHHHHHHHHHhcCCCceEEEEcCCCHHHHHHHHHHhccCCCeEEEeccchHHHHH--Hhh
Confidence 5678888888742 12344445553 3333 46766666431 1 1234589999998765 466 789
Q ss_pred eEEEecCChhhHHHHHHhCCcEEec-CCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCChhHHHHHHHHHH
Q psy16503 84 KVFISHGGFLGTTEALYSGVPIIGI-PMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSYKKRAEKVAR 162 (244)
Q Consensus 84 ~l~IthgG~~s~~Eal~~gvP~i~v-P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~~y~~~a~~~s~ 162 (244)
|++|+.+|..|+.||+++|+|+|+. |..++|..|+..+.+.|+|+..+ +.+++.++|.++++|++.++++.+.+.
T Consensus 275 Dl~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~~G~g~~~~----~~~~l~~~i~~ll~~~~~~~~m~~~~~ 350 (391)
T PRK13608 275 QLMITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEEKGFGKIAD----TPEEAIKIVASLTNGNEQLTNMISTME 350 (391)
T ss_pred hEEEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHhCCcEEEeC----CHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9999998888999999999999998 77777889999999999998864 688999999999999988888888887
Q ss_pred HHhCCCCChHHHHHHHHHHHHH
Q psy16503 163 LFQDRPMPPLDTAIYWIEHVIR 184 (244)
Q Consensus 163 ~~~~~~~~~~~~a~~~ie~~~~ 184 (244)
.... +.+ .+..++.++.++.
T Consensus 351 ~~~~-~~s-~~~i~~~l~~l~~ 370 (391)
T PRK13608 351 QDKI-KYA-TQTICRDLLDLIG 370 (391)
T ss_pred HhcC-CCC-HHHHHHHHHHHhh
Confidence 7754 444 4444444444443
No 36
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.37 E-value=3.7e-11 Score=107.17 Aligned_cols=156 Identities=17% Similarity=0.219 Sum_probs=115.4
Q ss_pred CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCC-CeEEEEecCCC-----C----CCCCCCEEEeccCChh-hhhCCCCe
Q psy16503 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIP-QRVIWKWEGEN-----M----SGKIDKILLKSWAPQR-DILDHPNV 83 (244)
Q Consensus 15 ~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~-~~viw~~~~~~-----~----~~~~~nv~~~~~~pq~-~lL~h~~~ 83 (244)
++++++..|+... .+.+..+++++.+.+ .++++..+++. + ...++|+.+.+|+++. +++ ..+
T Consensus 202 ~~~il~~~G~~~~-----~k~~~~li~~l~~~~~~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~--~~a 274 (380)
T PRK13609 202 KKILLIMAGAHGV-----LGNVKELCQSLMSVPDLQVVVVCGKNEALKQSLEDLQETNPDALKVFGYVENIDELF--RVT 274 (380)
T ss_pred CcEEEEEcCCCCC-----CcCHHHHHHHHhhCCCcEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEechhhHHHHH--Hhc
Confidence 4677777777632 122455667776554 46777666321 1 1234689999999875 677 789
Q ss_pred eEEEecCChhhHHHHHHhCCcEEec-CCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCChhHHHHHHHHHH
Q psy16503 84 KVFISHGGFLGTTEALYSGVPIIGI-PMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSYKKRAEKVAR 162 (244)
Q Consensus 84 ~l~IthgG~~s~~Eal~~gvP~i~v-P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~~y~~~a~~~s~ 162 (244)
|++|+.+|..++.||+++|+|+|+. |..++|..|+..+.+.|+|+... +.+++.++|.++++|++.++++.+.+.
T Consensus 275 D~~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~~G~~~~~~----~~~~l~~~i~~ll~~~~~~~~m~~~~~ 350 (380)
T PRK13609 275 SCMITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFERKGAAVVIR----DDEEVFAKTEALLQDDMKLLQMKEAMK 350 (380)
T ss_pred cEEEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHhCCcEEEEC----CHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 9999999988999999999999985 77778889999999999998753 579999999999999988888888777
Q ss_pred HHhCCCCChHHHHHHHHHHHH
Q psy16503 163 LFQDRPMPPLDTAIYWIEHVI 183 (244)
Q Consensus 163 ~~~~~~~~~~~~a~~~ie~~~ 183 (244)
.+... .+.+..+..++..+
T Consensus 351 ~~~~~--~s~~~i~~~i~~~~ 369 (380)
T PRK13609 351 SLYLP--EPADHIVDDILAEN 369 (380)
T ss_pred HhCCC--chHHHHHHHHHHhh
Confidence 66542 35566655555443
No 37
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.30 E-value=2.3e-10 Score=102.38 Aligned_cols=159 Identities=13% Similarity=0.115 Sum_probs=108.4
Q ss_pred CceEEEEcCCCCCCCCCCHHHHHHHHHHHh-----cCCCeEEEEecCCC-----CCC--CCCCEEEeccCChhhhhCCCC
Q psy16503 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFE-----QIPQRVIWKWEGEN-----MSG--KIDKILLKSWAPQRDILDHPN 82 (244)
Q Consensus 15 ~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~-----~~~~~viw~~~~~~-----~~~--~~~nv~~~~~~pq~~lL~h~~ 82 (244)
+++|++..|+... ....+.++.+.+.+. ..+.++++.+|++. +.. ...++.+.+|.++..-+. ..
T Consensus 206 ~~~il~~Gg~~g~--~~~~~li~~l~~~~~~~~~~~~~~~~~vi~G~~~~~~~~L~~~~~~~~v~~~G~~~~~~~l~-~a 282 (382)
T PLN02605 206 LPAVLLMGGGEGM--GPLEETARALGDSLYDKNLGKPIGQVVVICGRNKKLQSKLESRDWKIPVKVRGFVTNMEEWM-GA 282 (382)
T ss_pred CcEEEEECCCccc--ccHHHHHHHHHHhhccccccCCCceEEEEECCCHHHHHHHHhhcccCCeEEEeccccHHHHH-Hh
Confidence 4667766665532 111333333333221 11245677777531 111 234788999998664333 78
Q ss_pred eeEEEecCChhhHHHHHHhCCcEEecCCCcch-hhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCC-hhHHHHHHHH
Q psy16503 83 VKVFISHGGFLGTTEALYSGVPIIGIPMFGDQ-KANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGN-PSYKKRAEKV 160 (244)
Q Consensus 83 ~~l~IthgG~~s~~Eal~~gvP~i~vP~~~dQ-~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~-~~y~~~a~~~ 160 (244)
+|++|+.+|.+|+.||+++|+|+|+.+....| ..|+..+.+.|.|+.+. +.+++.++|.+++.| ++.++++.+.
T Consensus 283 aDv~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~~g~g~~~~----~~~~la~~i~~ll~~~~~~~~~m~~~ 358 (382)
T PLN02605 283 CDCIITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVDNGFGAFSE----SPKEIARIVAEWFGDKSDELEAMSEN 358 (382)
T ss_pred CCEEEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHhCCceeecC----CHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999765555 47999999999998762 689999999999988 8878888887
Q ss_pred HHHHhCCCCChHHHHHHHHHHH
Q psy16503 161 ARLFQDRPMPPLDTAIYWIEHV 182 (244)
Q Consensus 161 s~~~~~~~~~~~~~a~~~ie~~ 182 (244)
++.... | .+.+.++..+...
T Consensus 359 ~~~~~~-~-~a~~~i~~~l~~~ 378 (382)
T PLN02605 359 ALKLAR-P-EAVFDIVHDLHEL 378 (382)
T ss_pred HHHhcC-C-chHHHHHHHHHHH
Confidence 777754 3 3445555444433
No 38
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.29 E-value=3e-11 Score=106.03 Aligned_cols=101 Identities=24% Similarity=0.276 Sum_probs=85.4
Q ss_pred ChhhhhCCCCeeEEEecCChhhHHHHHHhCCcEEecCCC---cchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhC
Q psy16503 73 PQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMF---GDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLG 149 (244)
Q Consensus 73 pq~~lL~h~~~~l~IthgG~~s~~Eal~~gvP~i~vP~~---~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~ 149 (244)
+..+++ +.+|++|+++|.+++.||+++|+|+|++|.. ++|..|+..+.+.|.|..++..+.+.++|.++++++++
T Consensus 243 ~~~~~l--~~ad~~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~ 320 (348)
T TIGR01133 243 NMAAAY--AAADLVISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLL 320 (348)
T ss_pred CHHHHH--HhCCEEEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHc
Confidence 456778 7899999999988999999999999999863 57888999999999999998877789999999999999
Q ss_pred ChhHHHHHHHHHHHHhCCCCChHHHHHH
Q psy16503 150 NPSYKKRAEKVARLFQDRPMPPLDTAIY 177 (244)
Q Consensus 150 ~~~y~~~a~~~s~~~~~~~~~~~~~a~~ 177 (244)
|+++++++.+.++.+.. ....+++++
T Consensus 321 ~~~~~~~~~~~~~~~~~--~~~~~~i~~ 346 (348)
T TIGR01133 321 DPANLEAMAEAARKLAK--PDAAKRIAE 346 (348)
T ss_pred CHHHHHHHHHHHHhcCC--ccHHHHHHh
Confidence 99999888888876654 344555443
No 39
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.13 E-value=6.2e-10 Score=95.88 Aligned_cols=133 Identities=20% Similarity=0.188 Sum_probs=107.6
Q ss_pred CCceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCC--e-EEEEecCCCCC-----------CCCCCEEEeccCChhhhhC
Q psy16503 14 VNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQ--R-VIWKWEGENMS-----------GKIDKILLKSWAPQRDILD 79 (244)
Q Consensus 14 ~~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~--~-viw~~~~~~~~-----------~~~~nv~~~~~~pq~~lL~ 79 (244)
++..|+||.|+.. ...+++...+.|-..++. + .+...|. .++ ..-+++.+..|..+..-|.
T Consensus 218 E~~~Ilvs~GGG~----dG~eLi~~~l~A~~~l~~l~~~~~ivtGP-~MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll 292 (400)
T COG4671 218 EGFDILVSVGGGA----DGAELIETALAAAQLLAGLNHKWLIVTGP-FMPEAQRQKLLASAPKRPHISIFEFRNDFESLL 292 (400)
T ss_pred ccceEEEecCCCh----hhHHHHHHHHHHhhhCCCCCcceEEEeCC-CCCHHHHHHHHHhcccCCCeEEEEhhhhHHHHH
Confidence 4568999998884 468889988888776543 2 3444443 222 1237899999987664333
Q ss_pred CCCeeEEEecCChhhHHHHHHhCCcEEecCCC---cchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCChh
Q psy16503 80 HPNVKVFISHGGFLGTTEALYSGVPIIGIPMF---GDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPS 152 (244)
Q Consensus 80 h~~~~l~IthgG~~s~~Eal~~gvP~i~vP~~---~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~~ 152 (244)
..++++|+-||+||++|-+.+|+|.+++|.. .||-.-|.++++.|+.-++.++++++..+.++|...+.-|+
T Consensus 293 -~gA~~vVSm~GYNTvCeILs~~k~aLivPr~~p~eEQliRA~Rl~~LGL~dvL~pe~lt~~~La~al~~~l~~P~ 367 (400)
T COG4671 293 -AGARLVVSMGGYNTVCEILSFGKPALIVPRAAPREEQLIRAQRLEELGLVDVLLPENLTPQNLADALKAALARPS 367 (400)
T ss_pred -HhhheeeecccchhhhHHHhCCCceEEeccCCCcHHHHHHHHHHHhcCcceeeCcccCChHHHHHHHHhcccCCC
Confidence 7999999999999999999999999999984 49999999999999999999999999999999999996443
No 40
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.13 E-value=1.8e-10 Score=98.86 Aligned_cols=97 Identities=16% Similarity=0.201 Sum_probs=75.6
Q ss_pred ceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCC--CeEEEEecCCC-C-------CCCCCCEEEeccCChh-hhhCCCCee
Q psy16503 16 GVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIP--QRVIWKWEGEN-M-------SGKIDKILLKSWAPQR-DILDHPNVK 84 (244)
Q Consensus 16 ~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~--~~viw~~~~~~-~-------~~~~~nv~~~~~~pq~-~lL~h~~~~ 84 (244)
+.|++++|+.. +......+++++.+.+ .++.+.+|... . ....+|+.+..+.+++ ++| +.+|
T Consensus 171 ~~iLi~~GG~d-----~~~~~~~~l~~l~~~~~~~~i~vv~G~~~~~~~~l~~~~~~~~~i~~~~~~~~m~~lm--~~aD 243 (279)
T TIGR03590 171 RRVLVSFGGAD-----PDNLTLKLLSALAESQINISITLVTGSSNPNLDELKKFAKEYPNIILFIDVENMAELM--NEAD 243 (279)
T ss_pred CeEEEEeCCcC-----CcCHHHHHHHHHhccccCceEEEEECCCCcCHHHHHHHHHhCCCEEEEeCHHHHHHHH--HHCC
Confidence 57999999883 3334556667776553 46777777521 1 1235689999999887 566 8999
Q ss_pred EEEecCChhhHHHHHHhCCcEEecCCCcchhhHHHH
Q psy16503 85 VFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRV 120 (244)
Q Consensus 85 l~IthgG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~ 120 (244)
++||+|| +|++|+++.|+|+|++|...+|..||+.
T Consensus 244 l~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 244 LAIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred EEEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 9999999 8999999999999999999999999975
No 41
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.02 E-value=7.6e-09 Score=93.15 Aligned_cols=156 Identities=20% Similarity=0.141 Sum_probs=105.9
Q ss_pred CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcC----CCeEEEEe-cCCCC-------C--CC--------------CCCE
Q psy16503 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQI----PQRVIWKW-EGENM-------S--GK--------------IDKI 66 (244)
Q Consensus 15 ~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~----~~~viw~~-~~~~~-------~--~~--------------~~nv 66 (244)
.++|++-.||... +. ...+..+++++..+ +..|++.+ ++... . +. .+++
T Consensus 205 ~~~lllLpGSR~a-e~--~~~lp~~l~al~~L~~~~~~~~v~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 281 (396)
T TIGR03492 205 RFRIALLPGSRPP-EA--YRNLKLLLRALEALPDSQPFVFLAAIVPSLSLEKLQAILEDLGWQLEGSSEDQTSLFQKGTL 281 (396)
T ss_pred CCEEEEECCCCHH-HH--HccHHHHHHHHHHHhhCCCeEEEEEeCCCCCHHHHHHHHHhcCceecCCccccchhhccCce
Confidence 4577777787733 11 12234556665554 34788877 33211 1 11 1235
Q ss_pred EEeccCC-hhhhhCCCCeeEEEecCChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHc----CceeecCCCCCCHHHHH
Q psy16503 67 LLKSWAP-QRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKA----GFGVTLPYDQITEETVL 141 (244)
Q Consensus 67 ~~~~~~p-q~~lL~h~~~~l~IthgG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~----G~g~~l~~~~~~~~~l~ 141 (244)
.+..+.. ..+++ ..+|++|+.+|..| .|+++.|+|+|.+|.-.+|. |+..+++. |.++.+... +.+.+.
T Consensus 282 ~v~~~~~~~~~~l--~~ADlvI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~~~~~~l~g~~~~l~~~--~~~~l~ 355 (396)
T TIGR03492 282 EVLLGRGAFAEIL--HWADLGIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFAEAQSRLLGGSVFLASK--NPEQAA 355 (396)
T ss_pred EEEechHhHHHHH--HhCCEEEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHHHhhHhhcCCEEecCCC--CHHHHH
Confidence 5555544 34677 78999999999877 99999999999999878887 99888775 777777543 459999
Q ss_pred HHHHHHhCChhHHHHHH-HHHHHHhCCCCChHHHHHHHHHH
Q psy16503 142 VALRTVLGNPSYKKRAE-KVARLFQDRPMPPLDTAIYWIEH 181 (244)
Q Consensus 142 ~ai~~ll~~~~y~~~a~-~~s~~~~~~~~~~~~~a~~~ie~ 181 (244)
+++.++++|++.++++. +..+.+.+ .++.++++..+..
T Consensus 356 ~~l~~ll~d~~~~~~~~~~~~~~lg~--~~a~~~ia~~i~~ 394 (396)
T TIGR03492 356 QVVRQLLADPELLERCRRNGQERMGP--PGASARIAESILK 394 (396)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHH
Confidence 99999999988877776 44444543 3567777766553
No 42
>KOG3349|consensus
Probab=99.01 E-value=1.8e-09 Score=82.27 Aligned_cols=117 Identities=15% Similarity=0.186 Sum_probs=87.5
Q ss_pred ceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCC-eEEEEecCCC-CCCC-------CC--CEEEeccCCh-hhhhCCCCe
Q psy16503 16 GVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQ-RVIWKWEGEN-MSGK-------ID--KILLKSWAPQ-RDILDHPNV 83 (244)
Q Consensus 16 ~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~-~viw~~~~~~-~~~~-------~~--nv~~~~~~pq-~~lL~h~~~ 83 (244)
..+||+-||.........-..++.++.+.+.+. +.+.++|+.. ..+. .. .+..++|-|. .+.+ ..+
T Consensus 4 ~~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~~~~d~~~~~~k~~gl~id~y~f~psl~e~I--~~A 81 (170)
T KOG3349|consen 4 MTVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQPFFGDPIDLIRKNGGLTIDGYDFSPSLTEDI--RSA 81 (170)
T ss_pred eEEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCccCCCCHHHhhcccCCeEEEEEecCccHHHHH--hhc
Confidence 579999999975333334444556777777776 8899998742 1111 11 3556677786 3444 569
Q ss_pred eEEEecCChhhHHHHHHhCCcEEecCC----CcchhhHHHHHHHcCceeecCCCC
Q psy16503 84 KVFISHGGFLGTTEALYSGVPIIGIPM----FGDQKANIRVVEKAGFGVTLPYDQ 134 (244)
Q Consensus 84 ~l~IthgG~~s~~Eal~~gvP~i~vP~----~~dQ~~na~~~~~~G~g~~l~~~~ 134 (244)
+++|+|||+||+.|.+..|+|.|+++= -.+|..-|..+++.|.=..-.+.+
T Consensus 82 dlVIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~egyL~~C~ps~ 136 (170)
T KOG3349|consen 82 DLVISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAEEGYLYYCTPST 136 (170)
T ss_pred cEEEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHhcCcEEEeeccc
Confidence 999999999999999999999999983 479999999999999888776544
No 43
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.89 E-value=2e-08 Score=84.24 Aligned_cols=144 Identities=20% Similarity=0.178 Sum_probs=114.3
Q ss_pred CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecC--CCCC------CCCCCEEEeccCChhhhhCCCCeeEE
Q psy16503 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEG--ENMS------GKIDKILLKSWAPQRDILDHPNVKVF 86 (244)
Q Consensus 15 ~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~--~~~~------~~~~nv~~~~~~pq~~lL~h~~~~l~ 86 (244)
..-|+|++|+. .|..+.-.++..+.+.+..+-...+. ..+. ...+|+.+......+.-|. ..+++.
T Consensus 158 ~r~ilI~lGGs-----Dpk~lt~kvl~~L~~~~~nl~iV~gs~~p~l~~l~k~~~~~~~i~~~~~~~dma~LM-ke~d~a 231 (318)
T COG3980 158 KRDILITLGGS-----DPKNLTLKVLAELEQKNVNLHIVVGSSNPTLKNLRKRAEKYPNINLYIDTNDMAELM-KEADLA 231 (318)
T ss_pred hheEEEEccCC-----ChhhhHHHHHHHhhccCeeEEEEecCCCcchhHHHHHHhhCCCeeeEecchhHHHHH-Hhcchh
Confidence 45699999999 56677888888888877655555553 2222 2456788777776554333 789999
Q ss_pred EecCChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCChhHHHHHHHHHHHHhC
Q psy16503 87 ISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSYKKRAEKVARLFQD 166 (244)
Q Consensus 87 IthgG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~~y~~~a~~~s~~~~~ 166 (244)
|+.||. |++|++..|+|.+++|+...|..-|..++..|+...++.. ++.......+.++.+|+..|.+....++.+-+
T Consensus 232 I~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~lg~~~~l~~~-l~~~~~~~~~~~i~~d~~~rk~l~~~~~~i~d 309 (318)
T COG3980 232 ISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEFEALGIIKQLGYH-LKDLAKDYEILQIQKDYARRKNLSFGSKLIGD 309 (318)
T ss_pred eeccch-HHHHHHHhcCCceEEeeeccHHHHHHHHHhcCchhhccCC-CchHHHHHHHHHhhhCHHHhhhhhhccceeec
Confidence 999997 8999999999999999999999999999999999998766 67788888889999998888887776665544
No 44
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.84 E-value=5.3e-08 Score=86.67 Aligned_cols=163 Identities=13% Similarity=0.089 Sum_probs=98.3
Q ss_pred CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcC----C-CeEEEEecCCC--------CCCC-CCCEEEeccCChhhhhCC
Q psy16503 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQI----P-QRVIWKWEGEN--------MSGK-IDKILLKSWAPQRDILDH 80 (244)
Q Consensus 15 ~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~----~-~~viw~~~~~~--------~~~~-~~nv~~~~~~pq~~lL~h 80 (244)
+++|++..||.... .......+++++..+ + .+++|..++.. .... .-++.+..- .-.+++
T Consensus 186 ~~~il~~~gsr~~~---~~~~~~~l~~a~~~l~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~-- 259 (380)
T PRK00025 186 ARVLALLPGSRGQE---IKRLLPPFLKAAQLLQQRYPDLRFVLPLVNPKRREQIEEALAEYAGLEVTLLDG-QKREAM-- 259 (380)
T ss_pred CCEEEEECCCCHHH---HHHHHHHHHHHHHHHHHhCCCeEEEEecCChhhHHHHHHHHhhcCCCCeEEEcc-cHHHHH--
Confidence 34566666765320 112344455554332 3 36777654211 1111 223444331 234566
Q ss_pred CCeeEEEecCChhhHHHHHHhCCcEEecCCCc--------chhhH-----HHHHHHcCceeecCCCCCCHHHHHHHHHHH
Q psy16503 81 PNVKVFISHGGFLGTTEALYSGVPIIGIPMFG--------DQKAN-----IRVVEKAGFGVTLPYDQITEETVLVALRTV 147 (244)
Q Consensus 81 ~~~~l~IthgG~~s~~Eal~~gvP~i~vP~~~--------dQ~~n-----a~~~~~~G~g~~l~~~~~~~~~l~~ai~~l 147 (244)
..+|++|+.+|.+++ ||+++|+|+|.+|-.+ +|..| +..+.+.+++..+..++.+++++.+++.++
T Consensus 260 ~~aDl~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~i~~l 338 (380)
T PRK00025 260 AAADAALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAGRELVPELLQEEATPEKLARALLPL 338 (380)
T ss_pred HhCCEEEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcCCCcchhhcCCCCCHHHHHHHHHHH
Confidence 789999999999877 9999999999985432 22222 233333444444555677899999999999
Q ss_pred hCChhHHHHHHHHHHHHhCC-CCChHHHHHHHHHHHHH
Q psy16503 148 LGNPSYKKRAEKVARLFQDR-PMPPLDTAIYWIEHVIR 184 (244)
Q Consensus 148 l~~~~y~~~a~~~s~~~~~~-~~~~~~~a~~~ie~~~~ 184 (244)
++|++.++++.+.++..... ..++.+++++.+...++
T Consensus 339 l~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~~~~~ 376 (380)
T PRK00025 339 LADGARRQALLEGFTELHQQLRCGADERAAQAVLELLK 376 (380)
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Confidence 99998887777765333322 24578888888776654
No 45
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=98.82 E-value=3.2e-08 Score=88.77 Aligned_cols=158 Identities=16% Similarity=0.098 Sum_probs=105.0
Q ss_pred CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcC----CC-eEEEEecCC----CCC------CCCCCEEEeccCChhhhhC
Q psy16503 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQI----PQ-RVIWKWEGE----NMS------GKIDKILLKSWAPQRDILD 79 (244)
Q Consensus 15 ~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~----~~-~viw~~~~~----~~~------~~~~nv~~~~~~pq~~lL~ 79 (244)
+++|++-.||.... . ......+++++..+ +. ++++...+. .+. +.+..+....+ +..+++
T Consensus 191 ~~~Ilvl~GSR~ae--i-~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l- 265 (385)
T TIGR00215 191 GETLALLPGSRGSE--V-EKLFPLFLKAAQLLEQQEPDLRRVLPVVNFKRRLQFEQIKAEYGPDLQLHLIDG-DARKAM- 265 (385)
T ss_pred CCEEEEECCCCHHH--H-HHhHHHHHHHHHHHHHhCCCeEEEEEeCCchhHHHHHHHHHHhCCCCcEEEECc-hHHHHH-
Confidence 56777777777431 1 23455555554433 22 454433221 010 11223444433 344577
Q ss_pred CCCeeEEEecCChhhHHHHHHhCCcEEec----CCCc---------chhhHHHHHHHcCceeecCCCCCCHHHHHHHHHH
Q psy16503 80 HPNVKVFISHGGFLGTTEALYSGVPIIGI----PMFG---------DQKANIRVVEKAGFGVTLPYDQITEETVLVALRT 146 (244)
Q Consensus 80 h~~~~l~IthgG~~s~~Eal~~gvP~i~v----P~~~---------dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ 146 (244)
..+|++|+..|..|+ |++++|+|+|++ |+.. +|..|+..+...+++..+..++++++.|.+.+.+
T Consensus 266 -~aADl~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~~~~~~~~~~~~~~nil~~~~~~pel~q~~~~~~~l~~~~~~ 343 (385)
T TIGR00215 266 -FAADAALLASGTAAL-EAALIKTPMVVGYRMKPLTFLIARRLVKTDYISLPNILANRLLVPELLQEECTPHPLAIALLL 343 (385)
T ss_pred -HhCCEEeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHHHHHHHcCCeeeccHHhcCCccchhhcCCCCCHHHHHHHHHH
Confidence 789999999999888 999999999999 7631 3888999999999999988889999999999999
Q ss_pred HhCCh----hHHHHHHHHHHHHhCCC--CChHHHHHHHH
Q psy16503 147 VLGNP----SYKKRAEKVARLFQDRP--MPPLDTAIYWI 179 (244)
Q Consensus 147 ll~~~----~y~~~a~~~s~~~~~~~--~~~~~~a~~~i 179 (244)
+++|+ ++++++.+--..++.+- .++.++++..+
T Consensus 344 ll~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~i 382 (385)
T TIGR00215 344 LLENGLKAYKEMHRERQFFEELRQRIYCNADSERAAQAV 382 (385)
T ss_pred HhcCCcccHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 99998 77666655444443321 34566776643
No 46
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.69 E-value=7.4e-07 Score=77.37 Aligned_cols=137 Identities=18% Similarity=0.268 Sum_probs=94.4
Q ss_pred ceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCC----CeEEEEecCCC---CCCCCCCEEEeccCChhh---hhCCCCeeE
Q psy16503 16 GVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIP----QRVIWKWEGEN---MSGKIDKILLKSWAPQRD---ILDHPNVKV 85 (244)
Q Consensus 16 ~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~----~~viw~~~~~~---~~~~~~nv~~~~~~pq~~---lL~h~~~~l 85 (244)
+.+++..|+.... +-...+++++..+. ..+++.-++.. +....+|+.+.+++|+.+ ++ ..+|+
T Consensus 197 ~~~i~~~G~~~~~-----k~~~~~i~~~~~l~~~~~~~l~i~G~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~--~~~d~ 269 (364)
T cd03814 197 RPVLLYVGRLAPE-----KNLEALLDADLPLRRRPPVRLVIVGDGPARARLEARYPNVHFLGFLDGEELAAAY--ASADV 269 (364)
T ss_pred CeEEEEEeccccc-----cCHHHHHHHHHHhhhcCCceEEEEeCCchHHHHhccCCcEEEEeccCHHHHHHHH--HhCCE
Confidence 5667777776321 22333444444332 34444332221 223567899999988664 56 67899
Q ss_pred EEecCC----hhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCChhHHHHHHHHH
Q psy16503 86 FISHGG----FLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSYKKRAEKVA 161 (244)
Q Consensus 86 ~IthgG----~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~~y~~~a~~~s 161 (244)
++..++ .+++.||+++|+|+|+.+..+ +...+.+.+.|...+.. +.+++.++|.+++.|++.++++.+-+
T Consensus 270 ~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~~----~~~~i~~~~~g~~~~~~--~~~~l~~~i~~l~~~~~~~~~~~~~~ 343 (364)
T cd03814 270 FVFPSRTETFGLVVLEAMASGLPVVAPDAGG----PADIVTDGENGLLVEPG--DAEAFAAALAALLADPELRRRMAARA 343 (364)
T ss_pred EEECcccccCCcHHHHHHHcCCCEEEcCCCC----chhhhcCCcceEEcCCC--CHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 887643 478999999999999987654 44556667889888654 57889999999999998888888777
Q ss_pred HHHh
Q psy16503 162 RLFQ 165 (244)
Q Consensus 162 ~~~~ 165 (244)
....
T Consensus 344 ~~~~ 347 (364)
T cd03814 344 RAEA 347 (364)
T ss_pred HHHH
Confidence 7665
No 47
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=98.60 E-value=1.2e-06 Score=65.83 Aligned_cols=128 Identities=18% Similarity=0.210 Sum_probs=81.8
Q ss_pred EEEEcCCCCCCCCCCHHH-HHHHHHHHhcCCCeEEEEecCCCCCCCCC-CEEEeccCChhhhhCCCCeeEEEecCChhhH
Q psy16503 18 IYFSMGSIIQGKSFPSDK-RKAFLRAFEQIPQRVIWKWEGENMSGKID-KILLKSWAPQRDILDHPNVKVFISHGGFLGT 95 (244)
Q Consensus 18 I~vs~Gs~~~~~~~~~~~-~~~i~~al~~~~~~viw~~~~~~~~~~~~-nv~~~~~~pq~~lL~h~~~~l~IthgG~~s~ 95 (244)
++|+-||...+ +..-. ..++.+..+....++|.++|+.+...... .+.-+++-+-.+-+.| .++++|+|+|.||+
T Consensus 2 ifVTvGstf~~--f~rlv~k~e~~el~~~i~e~lIvQyGn~d~kpvagl~v~~F~~~~kiQsli~-darIVISHaG~GSI 78 (161)
T COG5017 2 IFVTVGSTFYP--FNRLVLKIEVLELTELIQEELIVQYGNGDIKPVAGLRVYGFDKEEKIQSLIH-DARIVISHAGEGSI 78 (161)
T ss_pred eEEEecCccch--HHHHHhhHHHHHHHHHhhhheeeeecCCCcccccccEEEeechHHHHHHHhh-cceEEEeccCcchH
Confidence 78999999431 11111 11122222222348999999744322122 3444445566665664 67799999999999
Q ss_pred HHHHHhCCcEEecCCC--------cchhhHHHHHHHcCceeecCCCCC-CHHHHHHHHHHHh
Q psy16503 96 TEALYSGVPIIGIPMF--------GDQKANIRVVEKAGFGVTLPYDQI-TEETVLVALRTVL 148 (244)
Q Consensus 96 ~Eal~~gvP~i~vP~~--------~dQ~~na~~~~~~G~g~~l~~~~~-~~~~l~~ai~~ll 148 (244)
..++..++|.|++|-- .+|..-|..+.+.+.-+...+.+. -.+-+.....+++
T Consensus 79 L~~~rl~kplIv~pr~s~y~elvDdHQvela~klae~~~vv~~spte~~L~a~l~~s~~~v~ 140 (161)
T COG5017 79 LLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAEINYVVACSPTELVLQAGLQVSVADVL 140 (161)
T ss_pred HHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHhcCceEEEcCCchhhHHhHhhhhhhhc
Confidence 9999999999999963 478899999999998888765432 2333444444444
No 48
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=98.55 E-value=7.8e-07 Score=70.07 Aligned_cols=146 Identities=18% Similarity=0.269 Sum_probs=97.9
Q ss_pred HHHHHHhcCCCceEEEEcCCCCCCCCCCHHHHHHHHHHHhc-----CCCeEEEEecCCC----------CCCCCCCEEEe
Q psy16503 5 DIKKFLDESVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQ-----IPQRVIWKWEGEN----------MSGKIDKILLK 69 (244)
Q Consensus 5 ~l~~~l~~~~~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~-----~~~~viw~~~~~~----------~~~~~~nv~~~ 69 (244)
.+.......+++.+++..|.... ..-...+++++.. .+.-.++.+|... ....++++.+.
T Consensus 4 ~~~~~~~~~~~~~~il~~g~~~~-----~K~~~~li~a~~~l~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~i~~~ 78 (172)
T PF00534_consen 4 KLREKLKIPDKKKIILFIGRLDP-----EKGIDLLIEAFKKLKEKKNPNYKLVIVGDGEYKKELKNLIEKLNLKENIIFL 78 (172)
T ss_dssp HHHHHTTT-TTSEEEEEESESSG-----GGTHHHHHHHHHHHHHHHHTTEEEEEESHCCHHHHHHHHHHHTTCGTTEEEE
T ss_pred HHHHHcCCCCCCeEEEEEecCcc-----ccCHHHHHHHHHHHHhhcCCCeEEEEEccccccccccccccccccccccccc
Confidence 34444444457888888888854 2334444454443 2333444455211 12456799999
Q ss_pred ccCC--hh-hhhCCCCeeEEEec----CChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHH
Q psy16503 70 SWAP--QR-DILDHPNVKVFISH----GGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLV 142 (244)
Q Consensus 70 ~~~p--q~-~lL~h~~~~l~Ith----gG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ 142 (244)
++.+ +. +++ ..++++++. |+..++.||+++|+|+|+-. -..+...+.+.+.|..++.. +.+++.+
T Consensus 79 ~~~~~~~l~~~~--~~~di~v~~s~~e~~~~~~~Ea~~~g~pvI~~~----~~~~~e~~~~~~~g~~~~~~--~~~~l~~ 150 (172)
T PF00534_consen 79 GYVPDDELDELY--KSSDIFVSPSRNEGFGLSLLEAMACGCPVIASD----IGGNNEIINDGVNGFLFDPN--DIEELAD 150 (172)
T ss_dssp ESHSHHHHHHHH--HHTSEEEE-BSSBSS-HHHHHHHHTT-EEEEES----STHHHHHSGTTTSEEEESTT--SHHHHHH
T ss_pred cccccccccccc--ccceeccccccccccccccccccccccceeecc----ccCCceeeccccceEEeCCC--CHHHHHH
Confidence 9988 32 455 558888876 66789999999999999864 34455666666779998765 7899999
Q ss_pred HHHHHhCChhHHHHHHHHHHH
Q psy16503 143 ALRTVLGNPSYKKRAEKVARL 163 (244)
Q Consensus 143 ai~~ll~~~~y~~~a~~~s~~ 163 (244)
+|.++++++++++++.+.++.
T Consensus 151 ~i~~~l~~~~~~~~l~~~~~~ 171 (172)
T PF00534_consen 151 AIEKLLNDPELRQKLGKNARE 171 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHhcC
Confidence 999999999888888877654
No 49
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=98.54 E-value=9.9e-06 Score=73.40 Aligned_cols=113 Identities=17% Similarity=0.182 Sum_probs=82.8
Q ss_pred CEEEeccCChh-hhhCCCCeeEEEec-----CChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHH
Q psy16503 65 KILLKSWAPQR-DILDHPNVKVFISH-----GGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEE 138 (244)
Q Consensus 65 nv~~~~~~pq~-~lL~h~~~~l~Ith-----gG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~ 138 (244)
++.+.+...+. +++ ..+|+++.. ||..++.||+++|+|+|.-|..+++...+..+.+.|+++... +.+
T Consensus 303 ~v~l~~~~~el~~~y--~~aDi~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~~g~~~~~~----d~~ 376 (425)
T PRK05749 303 DVLLGDTMGELGLLY--AIADIAFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQAGAAIQVE----DAE 376 (425)
T ss_pred cEEEEecHHHHHHHH--HhCCEEEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHHCCCeEEEC----CHH
Confidence 34444443333 455 678884431 445569999999999999999888888888887788777643 579
Q ss_pred HHHHHHHHHhCChhHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q psy16503 139 TVLVALRTVLGNPSYKKRAEKVARLFQDRPMPPLDTAIYWIEHVI 183 (244)
Q Consensus 139 ~l~~ai~~ll~~~~y~~~a~~~s~~~~~~~~~~~~~a~~~ie~~~ 183 (244)
+|.++|.++++|++.++++.+.+.....+.....++....++..+
T Consensus 377 ~La~~l~~ll~~~~~~~~m~~~a~~~~~~~~~~~~~~~~~l~~~l 421 (425)
T PRK05749 377 DLAKAVTYLLTDPDARQAYGEAGVAFLKQNQGALQRTLQLLEPYL 421 (425)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHhc
Confidence 999999999999988888888777665544566677776666433
No 50
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.53 E-value=2.7e-06 Score=74.15 Aligned_cols=138 Identities=19% Similarity=0.275 Sum_probs=93.8
Q ss_pred CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCC-CeEEEEecCCC---------CCCCCCCEEEeccCChhh---hhCCC
Q psy16503 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIP-QRVIWKWEGEN---------MSGKIDKILLKSWAPQRD---ILDHP 81 (244)
Q Consensus 15 ~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~-~~viw~~~~~~---------~~~~~~nv~~~~~~pq~~---lL~h~ 81 (244)
++.+++..|+... .+-...+++++.+++ ..+++.-++.. .....+||.+.+|+|+.+ ++ .
T Consensus 190 ~~~~i~~~G~~~~-----~K~~~~li~a~~~l~~~~l~i~G~g~~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~--~ 262 (357)
T cd03795 190 GRPFFLFVGRLVY-----YKGLDVLLEAAAALPDAPLVIVGEGPLEAELEALAAALGLLDRVRFLGRLDDEEKAALL--A 262 (357)
T ss_pred CCcEEEEeccccc-----ccCHHHHHHHHHhccCcEEEEEeCChhHHHHHHHHHhcCCcceEEEcCCCCHHHHHHHH--H
Confidence 4567788888743 233555677777776 45444333211 123567999999999754 55 5
Q ss_pred CeeEEEe-----c-CChhhHHHHHHhCCcEEecCCCcchhhHHHHHH-HcCceeecCCCCCCHHHHHHHHHHHhCChhHH
Q psy16503 82 NVKVFIS-----H-GGFLGTTEALYSGVPIIGIPMFGDQKANIRVVE-KAGFGVTLPYDQITEETVLVALRTVLGNPSYK 154 (244)
Q Consensus 82 ~~~l~It-----h-gG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~-~~G~g~~l~~~~~~~~~l~~ai~~ll~~~~y~ 154 (244)
.+++++. + |...++.||+++|+|+|+.+..+... .+. ..+.|...+.+ +.+++.++|.++++|++.+
T Consensus 263 ~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~----~i~~~~~~g~~~~~~--d~~~~~~~i~~l~~~~~~~ 336 (357)
T cd03795 263 ACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGS----YVNLHGVTGLVVPPG--DPAALAEAIRRLLEDPELR 336 (357)
T ss_pred hCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchh----HHhhCCCceEEeCCC--CHHHHHHHHHHHHHCHHHH
Confidence 6777772 1 33458999999999999976554433 333 36778887654 6899999999999998877
Q ss_pred HHHHHHHHHHh
Q psy16503 155 KRAEKVARLFQ 165 (244)
Q Consensus 155 ~~a~~~s~~~~ 165 (244)
+++.+.+....
T Consensus 337 ~~~~~~~~~~~ 347 (357)
T cd03795 337 ERLGEAARERA 347 (357)
T ss_pred HHHHHHHHHHH
Confidence 77777665554
No 51
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=98.49 E-value=4.8e-06 Score=71.98 Aligned_cols=138 Identities=17% Similarity=0.238 Sum_probs=92.2
Q ss_pred CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcC---CCeEEEEecCCCCC------CCCCCEEEeccCChhh---hhCCCC
Q psy16503 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQI---PQRVIWKWEGENMS------GKIDKILLKSWAPQRD---ILDHPN 82 (244)
Q Consensus 15 ~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~---~~~viw~~~~~~~~------~~~~nv~~~~~~pq~~---lL~h~~ 82 (244)
++.+++..|+.... +-...+++++..+ +.++++.-++.... ...+++.+.+++|+.+ ++ ..
T Consensus 190 ~~~~i~~~G~~~~~-----k~~~~li~~~~~l~~~~~~l~i~G~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~--~~ 262 (359)
T cd03823 190 GRLRFGFIGQLTPH-----KGVDLLLEAFKRLPRGDIELVIVGNGLELEEESYELEGDPRVEFLGAYPQEEIDDFY--AE 262 (359)
T ss_pred CceEEEEEecCccc-----cCHHHHHHHHHHHHhcCcEEEEEcCchhhhHHHHhhcCCCeEEEeCCCCHHHHHHHH--Hh
Confidence 46777788887432 2233444554444 23555433222111 2357899999997654 46 67
Q ss_pred eeEEEe-----cCChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCChhHHHHH
Q psy16503 83 VKVFIS-----HGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSYKKRA 157 (244)
Q Consensus 83 ~~l~It-----hgG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~~y~~~a 157 (244)
+++++. -|...++.||+++|+|+|+.+.. .....+.+.+.|..++.+ +.+++.+++.++++|+..++.+
T Consensus 263 ad~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~e~i~~~~~g~~~~~~--d~~~l~~~i~~l~~~~~~~~~~ 336 (359)
T cd03823 263 IDVLVVPSIWPENFPLVIREALAAGVPVIASDIG----GMAELVRDGVNGLLFPPG--DAEDLAAALERLIDDPDLLERL 336 (359)
T ss_pred CCEEEEcCcccCCCChHHHHHHHCCCCEEECCCC----CHHHHhcCCCcEEEECCC--CHHHHHHHHHHHHhChHHHHHH
Confidence 888884 23456899999999999997653 345566666688888765 4899999999999998877777
Q ss_pred HHHHHHHh
Q psy16503 158 EKVARLFQ 165 (244)
Q Consensus 158 ~~~s~~~~ 165 (244)
.+.+....
T Consensus 337 ~~~~~~~~ 344 (359)
T cd03823 337 RAGIEPPR 344 (359)
T ss_pred HHhHHHhh
Confidence 76655544
No 52
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=98.48 E-value=4.7e-06 Score=73.90 Aligned_cols=137 Identities=18% Similarity=0.280 Sum_probs=91.6
Q ss_pred CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcC----C-CeEEEEecCCCC---------------CCCCCCEEEeccCCh
Q psy16503 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQI----P-QRVIWKWEGENM---------------SGKIDKILLKSWAPQ 74 (244)
Q Consensus 15 ~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~----~-~~viw~~~~~~~---------------~~~~~nv~~~~~~pq 74 (244)
++.+++..|+.... .-...+++++..+ + .++++.-++... .+..+|+.+.+++|+
T Consensus 219 ~~~~i~~~gr~~~~-----k~~~~ll~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~ 293 (398)
T cd03800 219 DKPRILAVGRLDPR-----KGIDTLIRAYAELPELRERANLVIVGGPRDDILAMDEEELRELARELGVIDRVDFPGRVSR 293 (398)
T ss_pred CCcEEEEEcccccc-----cCHHHHHHHHHHHHHhCCCeEEEEEECCCCcchhhhhHHHHHHHHhcCCCceEEEeccCCH
Confidence 45677788887432 2233344444433 2 355554433210 123468999999997
Q ss_pred hh---hhCCCCeeEEEec----CChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHH
Q psy16503 75 RD---ILDHPNVKVFISH----GGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTV 147 (244)
Q Consensus 75 ~~---lL~h~~~~l~Ith----gG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~l 147 (244)
.+ ++ ..+++++.. |-..++.||+++|+|+|+.+..+ ....+.+.+.|..++.. +.+++.++|.++
T Consensus 294 ~~~~~~~--~~adi~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~~----~~e~i~~~~~g~~~~~~--~~~~l~~~i~~l 365 (398)
T cd03800 294 EDLPALY--RAADVFVNPALYEPFGLTALEAMACGLPVVATAVGG----PRDIVVDGVTGLLVDPR--DPEALAAALRRL 365 (398)
T ss_pred HHHHHHH--HhCCEEEecccccccCcHHHHHHhcCCCEEECCCCC----HHHHccCCCCeEEeCCC--CHHHHHHHHHHH
Confidence 65 46 668888853 33468999999999999876543 44556666789988654 589999999999
Q ss_pred hCChhHHHHHHHHHHHH
Q psy16503 148 LGNPSYKKRAEKVARLF 164 (244)
Q Consensus 148 l~~~~y~~~a~~~s~~~ 164 (244)
++|+..++++.+-+...
T Consensus 366 ~~~~~~~~~~~~~a~~~ 382 (398)
T cd03800 366 LTDPALRRRLSRAGLRR 382 (398)
T ss_pred HhCHHHHHHHHHHHHHH
Confidence 99987777766655544
No 53
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=98.44 E-value=1.3e-05 Score=68.67 Aligned_cols=134 Identities=21% Similarity=0.364 Sum_probs=91.0
Q ss_pred CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcC----C-CeEEEEecCCC----------CCCCCCCEEEeccCChh---h
Q psy16503 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQI----P-QRVIWKWEGEN----------MSGKIDKILLKSWAPQR---D 76 (244)
Q Consensus 15 ~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~----~-~~viw~~~~~~----------~~~~~~nv~~~~~~pq~---~ 76 (244)
++..++.+|+... .+-...+++++..+ + .++++ +|+.. ..+.++++.+.++++.. +
T Consensus 198 ~~~~i~~~g~~~~-----~k~~~~~i~~~~~~~~~~~~~~l~i-~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~ 271 (374)
T cd03801 198 DEPVILFVGRLVP-----RKGVDLLLEALAKLRKEYPDVRLVI-VGDGPLREELEALAAELGLGDRVTFLGFVPDEDLPA 271 (374)
T ss_pred CCeEEEEecchhh-----hcCHHHHHHHHHHHhhhcCCeEEEE-EeCcHHHHHHHHHHHHhCCCcceEEEeccChhhHHH
Confidence 4577788887743 22234444544433 2 23333 34311 12356799999999744 4
Q ss_pred hhCCCCeeEEEe----cCChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCChh
Q psy16503 77 ILDHPNVKVFIS----HGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPS 152 (244)
Q Consensus 77 lL~h~~~~l~It----hgG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~~ 152 (244)
++ ..++++|. -|..+++.||+++|+|+|+.+. ......+.+.+.|...+.. +.+++.++|.+++.|+.
T Consensus 272 ~~--~~~di~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~~~~g~~~~~~--~~~~l~~~i~~~~~~~~ 343 (374)
T cd03801 272 LY--AAADVFVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVEDGETGLLVPPG--DPEALAEAILRLLDDPE 343 (374)
T ss_pred HH--HhcCEEEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcCCcceEEeCCC--CHHHHHHHHHHHHcChH
Confidence 56 67888884 3557899999999999999866 2345556657888888654 48999999999999988
Q ss_pred HHHHHHHHHH
Q psy16503 153 YKKRAEKVAR 162 (244)
Q Consensus 153 y~~~a~~~s~ 162 (244)
.++++.+.+.
T Consensus 344 ~~~~~~~~~~ 353 (374)
T cd03801 344 LRRRLGEAAR 353 (374)
T ss_pred HHHHHHHHHH
Confidence 7777776665
No 54
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.43 E-value=2.1e-06 Score=75.71 Aligned_cols=132 Identities=16% Similarity=0.180 Sum_probs=88.6
Q ss_pred CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCC---eEEEEecCC---CC----CCC---CCCEEEeccCChh---hhh
Q psy16503 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQ---RVIWKWEGE---NM----SGK---IDKILLKSWAPQR---DIL 78 (244)
Q Consensus 15 ~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~---~viw~~~~~---~~----~~~---~~nv~~~~~~pq~---~lL 78 (244)
++.+++++|..... .+.+.+..+++++..+.. .+++..++. .+ ... .+++.+.+..+.. .++
T Consensus 198 ~~~vlv~~~r~~~~--~~~k~~~~l~~al~~l~~~~~~vi~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 275 (363)
T cd03786 198 KKYILVTLHRVENV--DDGEQLEEILEALAELAEEDVPVVFPNHPRTRPRIREAGLEFLGHHPNVLLISPLGYLYFLLLL 275 (363)
T ss_pred CCEEEEEeCCcccc--CChHHHHHHHHHHHHHHhcCCEEEEECCCChHHHHHHHHHhhccCCCCEEEECCcCHHHHHHHH
Confidence 46788888776321 135667778888776643 333322221 11 111 4688887765543 345
Q ss_pred CCCCeeEEEecCChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCChhHHHHHH
Q psy16503 79 DHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSYKKRAE 158 (244)
Q Consensus 79 ~h~~~~l~IthgG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~~y~~~a~ 158 (244)
..+|++|+..| +.+.||+++|+|+|.++-..+ +..+.+.|+++.+.. +.+++.+++.++++++..+.+++
T Consensus 276 --~~ad~~v~~Sg-gi~~Ea~~~g~PvI~~~~~~~----~~~~~~~g~~~~~~~---~~~~i~~~i~~ll~~~~~~~~~~ 345 (363)
T cd03786 276 --KNADLVLTDSG-GIQEEASFLGVPVLNLRDRTE----RPETVESGTNVLVGT---DPEAILAAIEKLLSDEFAYSLMS 345 (363)
T ss_pred --HcCcEEEEcCc-cHHhhhhhcCCCEEeeCCCCc----cchhhheeeEEecCC---CHHHHHHHHHHHhcCchhhhcCC
Confidence 67999999988 678899999999999864322 445667888877742 47899999999998877666654
No 55
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.42 E-value=9e-06 Score=72.15 Aligned_cols=150 Identities=13% Similarity=0.171 Sum_probs=95.2
Q ss_pred CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcC----C-CeEEEEecCCC--------CCCCCCCEEEeccCChh---hhh
Q psy16503 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQI----P-QRVIWKWEGEN--------MSGKIDKILLKSWAPQR---DIL 78 (244)
Q Consensus 15 ~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~----~-~~viw~~~~~~--------~~~~~~nv~~~~~~pq~---~lL 78 (244)
+++++++++-... . .+.+..+++++..+ + .++++..+++. ..+..+++.+.+.++.. .++
T Consensus 197 ~~~vl~~~hr~~~---~-~k~~~~ll~a~~~l~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l 272 (365)
T TIGR00236 197 KRYILLTLHRREN---V-GEPLENIFKAIREIVEEFEDVQIVYPVHLNPVVREPLHKHLGDSKRVHLIEPLEYLDFLNLA 272 (365)
T ss_pred CCEEEEecCchhh---h-hhHHHHHHHHHHHHHHHCCCCEEEEECCCChHHHHHHHHHhCCCCCEEEECCCChHHHHHHH
Confidence 3566666543211 1 13356666666553 2 35666533211 11234689988876654 455
Q ss_pred CCCCeeEEEecCChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCChhHHHHHH
Q psy16503 79 DHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSYKKRAE 158 (244)
Q Consensus 79 ~h~~~~l~IthgG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~~y~~~a~ 158 (244)
..++++++..|. .+.||+++|+|+|.++-.++++. +.+.|.+..+. -+.+++.+++.++++|+..++++.
T Consensus 273 --~~ad~vv~~Sg~-~~~EA~a~g~PvI~~~~~~~~~e----~~~~g~~~lv~---~d~~~i~~ai~~ll~~~~~~~~~~ 342 (365)
T TIGR00236 273 --ANSHLILTDSGG-VQEEAPSLGKPVLVLRDTTERPE----TVEAGTNKLVG---TDKENITKAAKRLLTDPDEYKKMS 342 (365)
T ss_pred --HhCCEEEECChh-HHHHHHHcCCCEEECCCCCCChH----HHhcCceEEeC---CCHHHHHHHHHHHHhChHHHHHhh
Confidence 678899997765 47999999999999976555442 33467776663 268999999999999988888776
Q ss_pred HHHHHHhCCCCChHHHHHHHHH
Q psy16503 159 KVARLFQDRPMPPLDTAIYWIE 180 (244)
Q Consensus 159 ~~s~~~~~~~~~~~~~a~~~ie 180 (244)
+....+.+ ..+.+++++.++
T Consensus 343 ~~~~~~g~--~~a~~ri~~~l~ 362 (365)
T TIGR00236 343 NASNPYGD--GEASERIVEELL 362 (365)
T ss_pred hcCCCCcC--chHHHHHHHHHH
Confidence 65544433 345566655544
No 56
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.42 E-value=2.6e-05 Score=68.54 Aligned_cols=157 Identities=15% Similarity=0.161 Sum_probs=97.1
Q ss_pred CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCC---------CCCCCCCEEEeccCChh-hhhCCCCee
Q psy16503 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGEN---------MSGKIDKILLKSWAPQR-DILDHPNVK 84 (244)
Q Consensus 15 ~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~---------~~~~~~nv~~~~~~pq~-~lL~h~~~~ 84 (244)
++.+++.+|...... ....+++.+.....+.+.++++.-.+.. ..+.++++.+.++.++. +++ ..++
T Consensus 196 ~~~~il~~g~l~~~K-~~~~li~a~~~l~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~--~~~d 272 (371)
T cd04962 196 GEKVLIHISNFRPVK-RIDDVIRIFAKVRKEVPARLLLVGDGPERSPAERLARELGLQDDVLFLGKQDHVEELL--SIAD 272 (371)
T ss_pred CCeEEEEeccccccc-CHHHHHHHHHHHHhcCCceEEEEcCCcCHHHHHHHHHHcCCCceEEEecCcccHHHHH--HhcC
Confidence 456777788774321 1223333322222223446655433321 11235679998887654 556 6788
Q ss_pred EEEec----CChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCChhHHHHHHHH
Q psy16503 85 VFISH----GGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSYKKRAEKV 160 (244)
Q Consensus 85 l~Ith----gG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~~y~~~a~~~ 160 (244)
+++.- |...++.||+++|+|+|+.+.. ..+..+.+...|..++.+ +.+++.+++.++++|+..+.++.+.
T Consensus 273 ~~v~ps~~E~~~~~~~EAma~g~PvI~s~~~----~~~e~i~~~~~G~~~~~~--~~~~l~~~i~~l~~~~~~~~~~~~~ 346 (371)
T cd04962 273 LFLLPSEKESFGLAALEAMACGVPVVASNAG----GIPEVVKHGETGFLVDVG--DVEAMAEYALSLLEDDELWQEFSRA 346 (371)
T ss_pred EEEeCCCcCCCccHHHHHHHcCCCEEEeCCC----CchhhhcCCCceEEcCCC--CHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 88842 4457999999999999997553 345555665678877654 5789999999999998877777766
Q ss_pred HHHHhCCCCChHHHHHHHHH
Q psy16503 161 ARLFQDRPMPPLDTAIYWIE 180 (244)
Q Consensus 161 s~~~~~~~~~~~~~a~~~ie 180 (244)
+.....+..+....+..+.+
T Consensus 347 ~~~~~~~~fs~~~~~~~~~~ 366 (371)
T cd04962 347 ARNRAAERFDSERIVPQYEA 366 (371)
T ss_pred HHHHHHHhCCHHHHHHHHHH
Confidence 66552223554444444443
No 57
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=98.39 E-value=9e-06 Score=70.66 Aligned_cols=141 Identities=16% Similarity=0.197 Sum_probs=89.7
Q ss_pred CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcC-CCeEEEEecCCC---------CCCCCCCEEEeccCChhh---hhCCC
Q psy16503 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQI-PQRVIWKWEGEN---------MSGKIDKILLKSWAPQRD---ILDHP 81 (244)
Q Consensus 15 ~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~-~~~viw~~~~~~---------~~~~~~nv~~~~~~pq~~---lL~h~ 81 (244)
++.+++..|+..... ..+.+-..++.+.+. +.++++ +|... .....+|+.+.+++|+.+ ++ .
T Consensus 219 ~~~~i~~~G~~~~~k--~~~~l~~~~~~l~~~~~~~l~i-~G~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~--~ 293 (394)
T cd03794 219 DKFVVLYAGNIGRAQ--GLDTLLEAAALLKDRPDIRFLI-VGDGPEKEELKELAKALGLDNVTFLGRVPKEELPELL--A 293 (394)
T ss_pred CcEEEEEecCccccc--CHHHHHHHHHHHhhcCCeEEEE-eCCcccHHHHHHHHHHcCCCcEEEeCCCChHHHHHHH--H
Confidence 467777788774321 222232333333333 234444 44311 112357899999988664 55 6
Q ss_pred CeeEEEecCC---------hhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCChh
Q psy16503 82 NVKVFISHGG---------FLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPS 152 (244)
Q Consensus 82 ~~~l~IthgG---------~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~~ 152 (244)
.++++|.... .+++.||+++|+|+|+.+..+.+. .+.+.+.|..++.+ +.+++.++|.+++.|++
T Consensus 294 ~~di~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~----~~~~~~~g~~~~~~--~~~~l~~~i~~~~~~~~ 367 (394)
T cd03794 294 AADVGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAE----LVEEAGAGLVVPPG--DPEALAAAILELLDDPE 367 (394)
T ss_pred hhCeeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchh----hhccCCcceEeCCC--CHHHHHHHHHHHHhChH
Confidence 7888875322 345899999999999998765433 33333778887654 57999999999999988
Q ss_pred HHHHHHHHHHHHhC
Q psy16503 153 YKKRAEKVARLFQD 166 (244)
Q Consensus 153 y~~~a~~~s~~~~~ 166 (244)
.++++.+.+..+..
T Consensus 368 ~~~~~~~~~~~~~~ 381 (394)
T cd03794 368 ERAEMGENGRRYVE 381 (394)
T ss_pred HHHHHHHHHHHHHH
Confidence 87777776665544
No 58
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.35 E-value=1.2e-05 Score=70.65 Aligned_cols=95 Identities=21% Similarity=0.307 Sum_probs=71.7
Q ss_pred CCCCEEEeccCChhh---hhCCCCeeEEEec----------CChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCcee
Q psy16503 62 KIDKILLKSWAPQRD---ILDHPNVKVFISH----------GGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGV 128 (244)
Q Consensus 62 ~~~nv~~~~~~pq~~---lL~h~~~~l~Ith----------gG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~ 128 (244)
.++++.+.+++|+.+ ++ ..+++++.- |..+++.||+++|+|+|+-+..+ +...+.+.+.|.
T Consensus 243 ~~~~v~~~g~~~~~~l~~~~--~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~----~~e~i~~~~~g~ 316 (367)
T cd05844 243 LGGRVTFLGAQPHAEVRELM--RRARIFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGG----IPEAVEDGETGL 316 (367)
T ss_pred CCCeEEECCCCCHHHHHHHH--HhCCEEEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCC----chhheecCCeeE
Confidence 467899999998654 46 677887742 23579999999999999887643 556666778898
Q ss_pred ecCCCCCCHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy16503 129 TLPYDQITEETVLVALRTVLGNPSYKKRAEKVARLF 164 (244)
Q Consensus 129 ~l~~~~~~~~~l~~ai~~ll~~~~y~~~a~~~s~~~ 164 (244)
.++.. +.+++.++|.++++|++.++++.+.+...
T Consensus 317 ~~~~~--d~~~l~~~i~~l~~~~~~~~~~~~~a~~~ 350 (367)
T cd05844 317 LVPEG--DVAALAAALGRLLADPDLRARMGAAGRRR 350 (367)
T ss_pred EECCC--CHHHHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 88654 57999999999999987666665554443
No 59
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.33 E-value=3.1e-05 Score=67.02 Aligned_cols=93 Identities=20% Similarity=0.240 Sum_probs=69.1
Q ss_pred CCCCEEEeccCChhh---hhCCCCeeEEEec----CChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCC
Q psy16503 62 KIDKILLKSWAPQRD---ILDHPNVKVFISH----GGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQ 134 (244)
Q Consensus 62 ~~~nv~~~~~~pq~~---lL~h~~~~l~Ith----gG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~ 134 (244)
.++++.+.+|+++.+ ++ ..+++++.- |-.+++.||+++|+|+|+.+..+ ....+.+ +.|...+.
T Consensus 260 ~~~~v~~~g~~~~~~~~~~~--~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~~~----~~~~~~~-~~~~~~~~-- 330 (375)
T cd03821 260 LEDRVTFTGMLYGEDKAAAL--ADADLFVLPSHSENFGIVVAEALACGTPVVTTDKVP----WQELIEY-GCGWVVDD-- 330 (375)
T ss_pred ccceEEEcCCCChHHHHHHH--hhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCCCC----HHHHhhc-CceEEeCC--
Confidence 467899999998554 46 567777753 23578999999999999976533 3344444 77877754
Q ss_pred CCHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy16503 135 ITEETVLVALRTVLGNPSYKKRAEKVARLF 164 (244)
Q Consensus 135 ~~~~~l~~ai~~ll~~~~y~~~a~~~s~~~ 164 (244)
+.+++.++|.++++|++.++++.+.+...
T Consensus 331 -~~~~~~~~i~~l~~~~~~~~~~~~~~~~~ 359 (375)
T cd03821 331 -DVDALAAALRRALELPQRLKAMGENGRAL 359 (375)
T ss_pred -ChHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 34999999999999987777777766665
No 60
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=98.33 E-value=8.7e-05 Score=66.40 Aligned_cols=92 Identities=16% Similarity=0.257 Sum_probs=64.6
Q ss_pred CCCCEEEeccCChh---hhhCCCCeeEEEec----CC-hhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeec-CC
Q psy16503 62 KIDKILLKSWAPQR---DILDHPNVKVFISH----GG-FLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTL-PY 132 (244)
Q Consensus 62 ~~~nv~~~~~~pq~---~lL~h~~~~l~Ith----gG-~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l-~~ 132 (244)
.+.++.+.+++|+. +++ ..+|+++.. .| ..++.||+++|+|+|+....+ +...+.+...|..+ +.
T Consensus 255 l~~~v~~~G~~~~~~l~~~~--~~aDv~v~pS~~~E~f~~~~lEAma~G~PVI~s~~gg----~~Eiv~~~~~G~~l~~~ 328 (380)
T PRK15484 255 IGDRCIMLGGQPPEKMHNYY--PLADLVVVPSQVEEAFCMVAVEAMAAGKPVLASTKGG----ITEFVLEGITGYHLAEP 328 (380)
T ss_pred cCCcEEEeCCCCHHHHHHHH--HhCCEEEeCCCCccccccHHHHHHHcCCCEEEeCCCC----cHhhcccCCceEEEeCC
Confidence 35688899998855 446 678888752 33 367899999999999986532 34455555678744 33
Q ss_pred CCCCHHHHHHHHHHHhCChhHHHHHHHHHH
Q psy16503 133 DQITEETVLVALRTVLGNPSYKKRAEKVAR 162 (244)
Q Consensus 133 ~~~~~~~l~~ai~~ll~~~~y~~~a~~~s~ 162 (244)
. +.+++.++|.++++|+..+ ++.+-+.
T Consensus 329 ~--d~~~la~~I~~ll~d~~~~-~~~~~ar 355 (380)
T PRK15484 329 M--TSDSIISDINRTLADPELT-QIAEQAK 355 (380)
T ss_pred C--CHHHHHHHHHHHHcCHHHH-HHHHHHH
Confidence 3 6899999999999998753 3333333
No 61
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=98.32 E-value=4.9e-06 Score=73.09 Aligned_cols=135 Identities=18% Similarity=0.258 Sum_probs=91.1
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCC---C-CCCCCCEEEeccCChh---hhhCCCCeeEEEe-
Q psy16503 17 VIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGEN---M-SGKIDKILLKSWAPQR---DILDHPNVKVFIS- 88 (244)
Q Consensus 17 vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~---~-~~~~~nv~~~~~~pq~---~lL~h~~~~l~It- 88 (244)
..++..|.... .+-...+++++..++.++++.-++.. + ...++||.+.+++|+. +++ ..+++++.
T Consensus 196 ~~il~~G~~~~-----~K~~~~li~a~~~~~~~l~ivG~g~~~~~l~~~~~~~V~~~g~~~~~~~~~~~--~~ad~~v~p 268 (351)
T cd03804 196 DYYLSVGRLVP-----YKRIDLAIEAFNKLGKRLVVIGDGPELDRLRAKAGPNVTFLGRVSDEELRDLY--ARARAFLFP 268 (351)
T ss_pred CEEEEEEcCcc-----ccChHHHHHHHHHCCCcEEEEECChhHHHHHhhcCCCEEEecCCCHHHHHHHH--HhCCEEEEC
Confidence 34566777743 33456677888888876655433321 1 1356899999999975 456 56777774
Q ss_pred -cCC-hhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCCh-hHHHHHHHHHHHH
Q psy16503 89 -HGG-FLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNP-SYKKRAEKVARLF 164 (244)
Q Consensus 89 -hgG-~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~-~y~~~a~~~s~~~ 164 (244)
.-| ..++.||+++|+|+|+....+ ....+.+.+.|..++.+ +.+++.++|.++++|+ ..++++++.++.+
T Consensus 269 s~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~~~~G~~~~~~--~~~~la~~i~~l~~~~~~~~~~~~~~~~~~ 341 (351)
T cd03804 269 AEEDFGIVPVEAMASGTPVIAYGKGG----ALETVIDGVTGILFEEQ--TVESLAAAVERFEKNEDFDPQAIRAHAERF 341 (351)
T ss_pred CcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeCCCCEEEeCCC--CHHHHHHHHHHHHhCcccCHHHHHHHHHhc
Confidence 222 356889999999999986533 23345555788888755 5788999999999887 5556665555433
No 62
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.32 E-value=1.4e-05 Score=68.24 Aligned_cols=96 Identities=19% Similarity=0.266 Sum_probs=70.2
Q ss_pred CCCCEEEeccCCh-hhhhCCCCeeEEEecC----ChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcC-ceeecCCCCC
Q psy16503 62 KIDKILLKSWAPQ-RDILDHPNVKVFISHG----GFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAG-FGVTLPYDQI 135 (244)
Q Consensus 62 ~~~nv~~~~~~pq-~~lL~h~~~~l~Ithg----G~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G-~g~~l~~~~~ 135 (244)
.++++.+.++.+. .+++ .++++++.-. ..+++.||+++|+|+|+.+..+.+ ..+.+.| .|..++..
T Consensus 233 ~~~~v~~~g~~~~~~~~~--~~ad~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~----~~~~~~~~~g~~~~~~-- 304 (348)
T cd03820 233 LEDRVILLGFTKNIEEYY--AKASIFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGP----SEIIEDGVNGLLVPNG-- 304 (348)
T ss_pred CCCeEEEcCCcchHHHHH--HhCCEEEeCccccccCHHHHHHHHcCCCEEEecCCCch----HhhhccCcceEEeCCC--
Confidence 4567888887443 3566 6788888653 257899999999999987654432 2344455 88888654
Q ss_pred CHHHHHHHHHHHhCChhHHHHHHHHHHHHh
Q psy16503 136 TEETVLVALRTVLGNPSYKKRAEKVARLFQ 165 (244)
Q Consensus 136 ~~~~l~~ai~~ll~~~~y~~~a~~~s~~~~ 165 (244)
+.+++.++|.++++|++.++++.+.+..+.
T Consensus 305 ~~~~~~~~i~~ll~~~~~~~~~~~~~~~~~ 334 (348)
T cd03820 305 DVEALAEALLRLMEDEELRKRMGANARESA 334 (348)
T ss_pred CHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 479999999999999998888877765554
No 63
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=98.29 E-value=2.4e-05 Score=71.30 Aligned_cols=166 Identities=15% Similarity=0.245 Sum_probs=97.9
Q ss_pred CCCceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCC------------CCCCCCCEEEeccCChhhhh-C
Q psy16503 13 SVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGEN------------MSGKIDKILLKSWAPQRDIL-D 79 (244)
Q Consensus 13 ~~~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~------------~~~~~~nv~~~~~~pq~~lL-~ 79 (244)
+++.++|.+|....+ ++++.++...+.|++.|...+|...... ..-.++.+.+.+..|..+.| .
T Consensus 282 p~d~vvF~~fn~~~K---I~p~~l~~W~~IL~~vP~S~L~L~~~~~~~~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~~ 358 (468)
T PF13844_consen 282 PEDAVVFGSFNNLFK---ISPETLDLWARILKAVPNSRLWLLRFPASGEARLRRRFAAHGVDPDRIIFSPVAPREEHLRR 358 (468)
T ss_dssp -SSSEEEEE-S-GGG-----HHHHHHHHHHHHHSTTEEEEEEETSTTHHHHHHHHHHHTTS-GGGEEEEE---HHHHHHH
T ss_pred CCCceEEEecCcccc---CCHHHHHHHHHHHHhCCCcEEEEeeCCHHHHHHHHHHHHHcCCChhhEEEcCCCCHHHHHHH
Confidence 346788888888865 8899999999999999998888765421 11135678888888876544 2
Q ss_pred CCCeeEEEe---cCChhhHHHHHHhCCcEEecCCC-cchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCChhHHH
Q psy16503 80 HPNVKVFIS---HGGFLGTTEALYSGVPIIGIPMF-GDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSYKK 155 (244)
Q Consensus 80 h~~~~l~It---hgG~~s~~Eal~~gvP~i~vP~~-~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~~y~~ 155 (244)
+..+|+++- .+|.+|.+||++.|||+|..|-- .-...-+..+...|+...+-. +.++-.+.--++-+|+++++
T Consensus 359 ~~~~DI~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~lGl~ElIA~---s~~eYv~~Av~La~D~~~l~ 435 (468)
T PF13844_consen 359 YQLADICLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRALGLPELIAD---SEEEYVEIAVRLATDPERLR 435 (468)
T ss_dssp GGG-SEEE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHHHT-GGGB-S---SHHHHHHHHHHHHH-HHHHH
T ss_pred hhhCCEEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHHcCCchhcCC---CHHHHHHHHHHHhCCHHHHH
Confidence 366888876 57888999999999999999853 344556777888899877654 45555554446667887776
Q ss_pred HHHHH-HHHHhCCCCChHHHHHHHHHHHHH
Q psy16503 156 RAEKV-ARLFQDRPMPPLDTAIYWIEHVIR 184 (244)
Q Consensus 156 ~a~~~-s~~~~~~~~~~~~~a~~~ie~~~~ 184 (244)
+.++- .+.....|.-.....+.-+|..++
T Consensus 436 ~lR~~Lr~~~~~SpLfd~~~~ar~lE~a~~ 465 (468)
T PF13844_consen 436 ALRAKLRDRRSKSPLFDPKRFARNLEAAYR 465 (468)
T ss_dssp HHHHHHHHHHHHSGGG-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 66553 334433343334555555555443
No 64
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=98.29 E-value=2e-05 Score=67.74 Aligned_cols=140 Identities=18% Similarity=0.258 Sum_probs=88.6
Q ss_pred CceEEEEcCCCCCCCCCCHHHHHHHHHHHhc-CC-CeEEEEecCCCC----------CCCCCCEEEeccCChh-hhhCCC
Q psy16503 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQ-IP-QRVIWKWEGENM----------SGKIDKILLKSWAPQR-DILDHP 81 (244)
Q Consensus 15 ~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~-~~-~~viw~~~~~~~----------~~~~~nv~~~~~~pq~-~lL~h~ 81 (244)
++.+++..|+..... ..+.+-..++.+.+ .+ .++++.-++... ....+++.+.++..+. +++ .
T Consensus 187 ~~~~i~~~G~~~~~k--~~~~li~~~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~--~ 262 (359)
T cd03808 187 DDPVFLFVARLLKDK--GIDELLEAARILKAKGPNVRLLLVGDGDEENPAAILEIEKLGLEGRVEFLGFRDDVPELL--A 262 (359)
T ss_pred CCcEEEEEecccccc--CHHHHHHHHHHHHhcCCCeEEEEEcCCCcchhhHHHHHHhcCCcceEEEeeccccHHHHH--H
Confidence 467888888874321 22222233333332 22 344443322111 0134578888875444 566 6
Q ss_pred CeeEEEecC----ChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCChhHHHHH
Q psy16503 82 NVKVFISHG----GFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSYKKRA 157 (244)
Q Consensus 82 ~~~l~Ithg----G~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~~y~~~a 157 (244)
.+++++.-. ..+++.||+++|+|+|+.+..+ ....+.+.+.|..++.+ +.+++.++|.+++.|++..+++
T Consensus 263 ~adi~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~~~----~~~~i~~~~~g~~~~~~--~~~~~~~~i~~l~~~~~~~~~~ 336 (359)
T cd03808 263 AADVFVLPSYREGLPRVLLEAMAMGRPVIATDVPG----CREAVIDGVNGFLVPPG--DAEALADAIERLIEDPELRARM 336 (359)
T ss_pred hccEEEecCcccCcchHHHHHHHcCCCEEEecCCC----chhhhhcCcceEEECCC--CHHHHHHHHHHHHhCHHHHHHH
Confidence 788888643 3679999999999999976543 34455556788888654 5899999999999998877776
Q ss_pred HHHHHHH
Q psy16503 158 EKVARLF 164 (244)
Q Consensus 158 ~~~s~~~ 164 (244)
.+.+...
T Consensus 337 ~~~~~~~ 343 (359)
T cd03808 337 GQAARKR 343 (359)
T ss_pred HHHHHHH
Confidence 6665555
No 65
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=98.25 E-value=6.1e-05 Score=68.06 Aligned_cols=145 Identities=19% Similarity=0.236 Sum_probs=90.4
Q ss_pred CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCC-CeEEEE-ecCCCC----------CCCCCCEEEeccCChhh---hhC
Q psy16503 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIP-QRVIWK-WEGENM----------SGKIDKILLKSWAPQRD---ILD 79 (244)
Q Consensus 15 ~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~-~~viw~-~~~~~~----------~~~~~nv~~~~~~pq~~---lL~ 79 (244)
++..+++.|....... ...+++.+....+..+ ..+.|. .|+... .....++.+.+|+|+.+ ++.
T Consensus 229 ~~~~il~~Grl~~~Kg-~~~li~a~~~l~~~~p~~~l~~~iiG~g~~~~~l~~~~~~~~~~~~V~f~G~v~~~e~~~~~~ 307 (407)
T cd04946 229 DTLRIVSCSYLVPVKR-VDLIIKALAALAKARPSIKIKWTHIGGGPLEDTLKELAESKPENISVNFTGELSNSEVYKLYK 307 (407)
T ss_pred CCEEEEEeeccccccC-HHHHHHHHHHHHHhCCCceEEEEEEeCchHHHHHHHHHHhcCCCceEEEecCCChHHHHHHHh
Confidence 4566777777754222 1233333333222223 255554 333111 12345799999999764 444
Q ss_pred CCCeeEEEec----CChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCChhHHH
Q psy16503 80 HPNVKVFISH----GGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSYKK 155 (244)
Q Consensus 80 h~~~~l~Ith----gG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~~y~~ 155 (244)
...+++|+.. |-.+++.||+++|+|+|+-...+ ....+.+.+.|..+... .+.+++.++|.++++|+..++
T Consensus 308 ~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~vgg----~~e~i~~~~~G~l~~~~-~~~~~la~~I~~ll~~~~~~~ 382 (407)
T cd04946 308 ENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATNVGG----TPEIVDNGGNGLLLSKD-PTPNELVSSLSKFIDNEEEYQ 382 (407)
T ss_pred hcCCCEEEeCCccccccHHHHHHHHcCCCEEeCCCCC----cHHHhcCCCcEEEeCCC-CCHHHHHHHHHHHHhCHHHHH
Confidence 3457787754 33578999999999999875433 34555555588887643 268999999999999988777
Q ss_pred HHHHHHHHHh
Q psy16503 156 RAEKVARLFQ 165 (244)
Q Consensus 156 ~a~~~s~~~~ 165 (244)
++.+.+...-
T Consensus 383 ~m~~~ar~~~ 392 (407)
T cd04946 383 TMREKAREKW 392 (407)
T ss_pred HHHHHHHHHH
Confidence 7776665544
No 66
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=98.24 E-value=4e-05 Score=70.41 Aligned_cols=138 Identities=17% Similarity=0.207 Sum_probs=93.5
Q ss_pred CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCC-eEEEEecCCC---CC--CCCCCEEEeccCChhh---hhCCCCeeE
Q psy16503 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQ-RVIWKWEGEN---MS--GKIDKILLKSWAPQRD---ILDHPNVKV 85 (244)
Q Consensus 15 ~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~-~viw~~~~~~---~~--~~~~nv~~~~~~pq~~---lL~h~~~~l 85 (244)
++.+++..|+.. +.+....+++++...+. ++++.-++.. +. ....++.+.+++|..+ ++ ..+|+
T Consensus 262 ~~~~i~~vGrl~-----~~K~~~~li~a~~~~~~~~l~ivG~G~~~~~l~~~~~~~~V~f~G~v~~~ev~~~~--~~aDv 334 (465)
T PLN02871 262 EKPLIVYVGRLG-----AEKNLDFLKRVMERLPGARLAFVGDGPYREELEKMFAGTPTVFTGMLQGDELSQAY--ASGDV 334 (465)
T ss_pred CCeEEEEeCCCc-----hhhhHHHHHHHHHhCCCcEEEEEeCChHHHHHHHHhccCCeEEeccCCHHHHHHHH--HHCCE
Confidence 345667778773 34556777888877764 5554333211 11 1235799999997654 56 67888
Q ss_pred EEec----CChhhHHHHHHhCCcEEecCCCcchhhHHHHHHH---cCceeecCCCCCCHHHHHHHHHHHhCChhHHHHHH
Q psy16503 86 FISH----GGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEK---AGFGVTLPYDQITEETVLVALRTVLGNPSYKKRAE 158 (244)
Q Consensus 86 ~Ith----gG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~---~G~g~~l~~~~~~~~~l~~ai~~ll~~~~y~~~a~ 158 (244)
||.- |-..++.||+++|+|+|+....+ ....+.+ .+.|..++.+ +.+++.++|.++++|++.++++.
T Consensus 335 ~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg----~~eiv~~~~~~~~G~lv~~~--d~~~la~~i~~ll~~~~~~~~~~ 408 (465)
T PLN02871 335 FVMPSESETLGFVVLEAMASGVPVVAARAGG----IPDIIPPDQEGKTGFLYTPG--DVDDCVEKLETLLADPELRERMG 408 (465)
T ss_pred EEECCcccccCcHHHHHHHcCCCEEEcCCCC----cHhhhhcCCCCCceEEeCCC--CHHHHHHHHHHHHhCHHHHHHHH
Confidence 8853 33467999999999999876532 2334444 6788888765 57999999999999988777766
Q ss_pred HHHHHHh
Q psy16503 159 KVARLFQ 165 (244)
Q Consensus 159 ~~s~~~~ 165 (244)
+.++...
T Consensus 409 ~~a~~~~ 415 (465)
T PLN02871 409 AAAREEV 415 (465)
T ss_pred HHHHHHH
Confidence 6665443
No 67
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.23 E-value=0.0001 Score=64.00 Aligned_cols=107 Identities=19% Similarity=0.250 Sum_probs=75.8
Q ss_pred CCCCEEEecc-CChh---hhhCCCCeeEEEe----c--CChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecC
Q psy16503 62 KIDKILLKSW-APQR---DILDHPNVKVFIS----H--GGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLP 131 (244)
Q Consensus 62 ~~~nv~~~~~-~pq~---~lL~h~~~~l~It----h--gG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~ 131 (244)
..+++.+.+. +|+. +++ ..+++++. - |..+++.||+++|+|+|+.+..+ ...+...+.|..++
T Consensus 245 ~~~~v~~~~~~~~~~~~~~~~--~~ad~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~~~~g~~~~ 317 (366)
T cd03822 245 LADRVIFINRYLPDEELPELF--SAADVVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLDGGTGLLVP 317 (366)
T ss_pred CCCcEEEecCcCCHHHHHHHH--hhcCEEEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeeeCCCcEEEc
Confidence 3568888764 8764 456 67888874 2 44568999999999999987644 34455567788876
Q ss_pred CCCCCHHHHHHHHHHHhCChhHHHHHHHHHHHHhCCCCChHHHHHHH
Q psy16503 132 YDQITEETVLVALRTVLGNPSYKKRAEKVARLFQDRPMPPLDTAIYW 178 (244)
Q Consensus 132 ~~~~~~~~l~~ai~~ll~~~~y~~~a~~~s~~~~~~~~~~~~~a~~~ 178 (244)
.. +.+++.+++.++++|++.+.++.+.+.....+ .+....+..+
T Consensus 318 ~~--d~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-~s~~~~~~~~ 361 (366)
T cd03822 318 PG--DPAALAEAIRRLLADPELAQALRARAREYARA-MSWERVAERY 361 (366)
T ss_pred CC--CHHHHHHHHHHHHcChHHHHHHHHHHHHHHhh-CCHHHHHHHH
Confidence 55 47999999999999977777777766666554 5544444333
No 68
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.23 E-value=6.6e-05 Score=64.66 Aligned_cols=84 Identities=20% Similarity=0.307 Sum_probs=64.7
Q ss_pred CCCCEEEeccCChh---hhhCCCCeeEEEe----cCChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCC
Q psy16503 62 KIDKILLKSWAPQR---DILDHPNVKVFIS----HGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQ 134 (244)
Q Consensus 62 ~~~nv~~~~~~pq~---~lL~h~~~~l~It----hgG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~ 134 (244)
.++|+.+.+++|+. +++ .++++++. -|..+++.||+++|+|+|+-+..+ ....+.+.+.|...+..
T Consensus 257 ~~~~v~~~g~~~~~~~~~~~--~~ad~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~~~----~~~~~~~~~~g~~~~~~- 329 (377)
T cd03798 257 LEDRVTFLGAVPHEEVPAYY--AAADVFVLPSLREGFGLVLLEAMACGLPVVATDVGG----IPEIITDGENGLLVPPG- 329 (377)
T ss_pred CcceEEEeCCCCHHHHHHHH--HhcCeeecchhhccCChHHHHHHhcCCCEEEecCCC----hHHHhcCCcceeEECCC-
Confidence 46789999999865 455 56788773 356789999999999999876533 44556666778887654
Q ss_pred CCHHHHHHHHHHHhCChhH
Q psy16503 135 ITEETVLVALRTVLGNPSY 153 (244)
Q Consensus 135 ~~~~~l~~ai~~ll~~~~y 153 (244)
+.+++.++|.++++++..
T Consensus 330 -~~~~l~~~i~~~~~~~~~ 347 (377)
T cd03798 330 -DPEALAEAILRLLADPWL 347 (377)
T ss_pred -CHHHHHHHHHHHhcCcHH
Confidence 589999999999988774
No 69
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.21 E-value=4.8e-05 Score=65.55 Aligned_cols=135 Identities=20% Similarity=0.279 Sum_probs=82.5
Q ss_pred CceEEEEcCCCCCCCCCCHHHHHHHHHHHhc----CC-CeEEEEecCCC----------CCCCCCCEEEeccCChh-hhh
Q psy16503 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQ----IP-QRVIWKWEGEN----------MSGKIDKILLKSWAPQR-DIL 78 (244)
Q Consensus 15 ~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~----~~-~~viw~~~~~~----------~~~~~~nv~~~~~~pq~-~lL 78 (244)
++.+++..|+.... +-...+++++.. .+ .++++.-.+.. ..+.++++.+.+..++. +++
T Consensus 192 ~~~~i~~~G~~~~~-----K~~~~li~a~~~l~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~ 266 (365)
T cd03807 192 DTFLIGIVARLHPQ-----KDHATLLRAAALLLKKFPNARLLLVGDGPDRANLELLALKELGLEDKVILLGERSDVPALL 266 (365)
T ss_pred CCeEEEEecccchh-----cCHHHHHHHHHHHHHhCCCeEEEEecCCcchhHHHHHHHHhcCCCceEEEccccccHHHHH
Confidence 45677788887432 223334444432 22 35555422211 11245677777765433 566
Q ss_pred CCCCeeEEEecC----ChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCChhHH
Q psy16503 79 DHPNVKVFISHG----GFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSYK 154 (244)
Q Consensus 79 ~h~~~~l~Ithg----G~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~~y~ 154 (244)
..+++++... ..+++.||+++|+|+|+.+.. .+...+.+ .|..++.+ +.+++.++|.++++|++.+
T Consensus 267 --~~adi~v~ps~~e~~~~~~~Ea~a~g~PvI~~~~~----~~~e~~~~--~g~~~~~~--~~~~l~~~i~~l~~~~~~~ 336 (365)
T cd03807 267 --NALDVFVLSSLSEGFPNVLLEAMACGLPVVATDVG----DNAELVGD--TGFLVPPG--DPEALAEAIEALLADPALR 336 (365)
T ss_pred --HhCCEEEeCCccccCCcHHHHHHhcCCCEEEcCCC----ChHHHhhc--CCEEeCCC--CHHHHHHHHHHHHhChHHH
Confidence 6788888653 358999999999999986543 33444444 56666544 5899999999999987666
Q ss_pred HHHHHHHHHH
Q psy16503 155 KRAEKVARLF 164 (244)
Q Consensus 155 ~~a~~~s~~~ 164 (244)
..+.+.+...
T Consensus 337 ~~~~~~~~~~ 346 (365)
T cd03807 337 QALGEAARER 346 (365)
T ss_pred HHHHHHHHHH
Confidence 5555544443
No 70
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.20 E-value=0.00026 Score=63.36 Aligned_cols=96 Identities=18% Similarity=0.134 Sum_probs=71.5
Q ss_pred CCCCEEEeccCChh---hhhCCCCeeEEEec----CChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCC
Q psy16503 62 KIDKILLKSWAPQR---DILDHPNVKVFISH----GGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQ 134 (244)
Q Consensus 62 ~~~nv~~~~~~pq~---~lL~h~~~~l~Ith----gG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~ 134 (244)
..+++.+.+++|.. +++ ..+|+++.- |...++.||+++|+|+|+....+ ....+.+.+.|..++..
T Consensus 281 l~~~v~~~g~~~~~~~~~~l--~~ad~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~~~----~~e~i~~~~~g~~~~~~- 353 (405)
T TIGR03449 281 IADRVRFLPPRPPEELVHVY--RAADVVAVPSYNESFGLVAMEAQACGTPVVAARVGG----LPVAVADGETGLLVDGH- 353 (405)
T ss_pred CCceEEECCCCCHHHHHHHH--HhCCEEEECCCCCCcChHHHHHHHcCCCEEEecCCC----cHhhhccCCceEECCCC-
Confidence 35689999998865 456 678887742 33468999999999999976533 33455566778888654
Q ss_pred CCHHHHHHHHHHHhCChhHHHHHHHHHHHHh
Q psy16503 135 ITEETVLVALRTVLGNPSYKKRAEKVARLFQ 165 (244)
Q Consensus 135 ~~~~~l~~ai~~ll~~~~y~~~a~~~s~~~~ 165 (244)
+.+++.++|.++++|+..++++.+.+....
T Consensus 354 -d~~~la~~i~~~l~~~~~~~~~~~~~~~~~ 383 (405)
T TIGR03449 354 -DPADWADALARLLDDPRTRIRMGAAAVEHA 383 (405)
T ss_pred -CHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 579999999999999887777766665544
No 71
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=98.19 E-value=7.8e-05 Score=64.56 Aligned_cols=96 Identities=21% Similarity=0.350 Sum_probs=70.3
Q ss_pred CCCCCEEEeccCChhh---hhCCCCeeEEEec----CChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCC
Q psy16503 61 GKIDKILLKSWAPQRD---ILDHPNVKVFISH----GGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYD 133 (244)
Q Consensus 61 ~~~~nv~~~~~~pq~~---lL~h~~~~l~Ith----gG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~ 133 (244)
+..+|+.+.+++|+.+ ++ ..+++++.. |+..++.||+++|+|+|+.+.. ..+..+.+.+.|..++.+
T Consensus 256 ~~~~~v~~~g~~~~~~~~~~~--~~ad~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~~~----~~~~~i~~~~~g~~~~~~ 329 (374)
T cd03817 256 GLADRVIFTGFVPREELPDYY--KAADLFVFASTTETQGLVLLEAMAAGLPVVAVDAP----GLPDLVADGENGFLFPPG 329 (374)
T ss_pred CCCCcEEEeccCChHHHHHHH--HHcCEEEecccccCcChHHHHHHHcCCcEEEeCCC----ChhhheecCceeEEeCCC
Confidence 3467999999998764 45 567888843 4457899999999999997643 344556666788888754
Q ss_pred CCCHHHHHHHHHHHhCChhHHHHHHHHHHHHh
Q psy16503 134 QITEETVLVALRTVLGNPSYKKRAEKVARLFQ 165 (244)
Q Consensus 134 ~~~~~~l~~ai~~ll~~~~y~~~a~~~s~~~~ 165 (244)
+ . ++.+++.+++++++.++.+.+.++...
T Consensus 330 ~--~-~~~~~i~~l~~~~~~~~~~~~~~~~~~ 358 (374)
T cd03817 330 D--E-ALAEALLRLLQDPELRRRLSKNAEESA 358 (374)
T ss_pred C--H-HHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 4 2 899999999999876655555554443
No 72
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.17 E-value=0.00015 Score=65.55 Aligned_cols=102 Identities=19% Similarity=0.250 Sum_probs=73.8
Q ss_pred CCCCEEEeccCChhh---hhCCCCeeEEEec---------CC-hhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCcee
Q psy16503 62 KIDKILLKSWAPQRD---ILDHPNVKVFISH---------GG-FLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGV 128 (244)
Q Consensus 62 ~~~nv~~~~~~pq~~---lL~h~~~~l~Ith---------gG-~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~ 128 (244)
..+++.+.+|+|+.+ ++ ..+|+|+.- -| .+++.||+++|+|+|+....+ ....+.+...|.
T Consensus 277 l~~~V~~~G~~~~~el~~~l--~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g----~~E~v~~~~~G~ 350 (406)
T PRK15427 277 LEDVVEMPGFKPSHEVKAML--DDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSG----IPELVEADKSGW 350 (406)
T ss_pred CCCeEEEeCCCCHHHHHHHH--HhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCC----chhhhcCCCceE
Confidence 467899999999764 55 678888752 23 467999999999999975533 334455556788
Q ss_pred ecCCCCCCHHHHHHHHHHHhC-ChhHHHHHHHHHHHHhCCCCCh
Q psy16503 129 TLPYDQITEETVLVALRTVLG-NPSYKKRAEKVARLFQDRPMPP 171 (244)
Q Consensus 129 ~l~~~~~~~~~l~~ai~~ll~-~~~y~~~a~~~s~~~~~~~~~~ 171 (244)
.++.. +.+++.++|.++++ |++.++++.+.++....+..+.
T Consensus 351 lv~~~--d~~~la~ai~~l~~~d~~~~~~~~~~ar~~v~~~f~~ 392 (406)
T PRK15427 351 LVPEN--DAQALAQRLAAFSQLDTDELAPVVKRAREKVETDFNQ 392 (406)
T ss_pred EeCCC--CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCH
Confidence 88654 58999999999999 8887777766665544333443
No 73
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.15 E-value=0.00018 Score=62.73 Aligned_cols=96 Identities=17% Similarity=0.145 Sum_probs=68.8
Q ss_pred CCCCEEEeccCC-hh---hhhCCCCeeEEEec----CChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCC
Q psy16503 62 KIDKILLKSWAP-QR---DILDHPNVKVFISH----GGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYD 133 (244)
Q Consensus 62 ~~~nv~~~~~~p-q~---~lL~h~~~~l~Ith----gG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~ 133 (244)
...++.+.+|++ +. .++ ..+++++.- |..+++.||+++|+|+|+....+ ....+.+.+.|..++..
T Consensus 242 ~~~~v~~~g~~~~~~~~~~~~--~~ad~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~~~----~~e~~~~~~~g~~~~~~ 315 (365)
T cd03825 242 LPFPVHYLGSLNDDESLALIY--SAADVFVVPSLQENFPNTAIEALACGTPVVAFDVGG----IPDIVDHGVTGYLAKPG 315 (365)
T ss_pred CCCceEecCCcCCHHHHHHHH--HhCCEEEeccccccccHHHHHHHhcCCCEEEecCCC----ChhheeCCCceEEeCCC
Confidence 466899999988 43 356 678888884 44689999999999999875432 22233344577777643
Q ss_pred CCCHHHHHHHHHHHhCChhHHHHHHHHHHHHh
Q psy16503 134 QITEETVLVALRTVLGNPSYKKRAEKVARLFQ 165 (244)
Q Consensus 134 ~~~~~~l~~ai~~ll~~~~y~~~a~~~s~~~~ 165 (244)
+.+++.+++.++++|++...++.+.+....
T Consensus 316 --~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 345 (365)
T cd03825 316 --DPEDLAEGIEWLLADPDEREELGEAARELA 345 (365)
T ss_pred --CHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 578999999999998876666665555443
No 74
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.11 E-value=0.00013 Score=64.50 Aligned_cols=152 Identities=18% Similarity=0.251 Sum_probs=92.7
Q ss_pred CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCC-----CeEEEEecCCC---------CCCCCCCEEEeccCCh-hhhhC
Q psy16503 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIP-----QRVIWKWEGEN---------MSGKIDKILLKSWAPQ-RDILD 79 (244)
Q Consensus 15 ~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~-----~~viw~~~~~~---------~~~~~~nv~~~~~~pq-~~lL~ 79 (244)
++.++++.|.....+ ....+++.+.....+.+ .++++.-++.. ..+...++.+.++.++ .+++
T Consensus 193 ~~~~i~~vGrl~~~K-g~~~li~a~~~l~~~~~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~- 270 (374)
T TIGR03088 193 ESVVVGTVGRLQAVK-DQPTLVRAFALLVRQLPEGAERLRLVIVGDGPARGACEQMVRAAGLAHLVWLPGERDDVPALM- 270 (374)
T ss_pred CCeEEEEEecCCccc-CHHHHHHHHHHHHHhCcccccceEEEEecCCchHHHHHHHHHHcCCcceEEEcCCcCCHHHHH-
Confidence 467888888885422 23344444444443332 25555432211 0123456777665443 3566
Q ss_pred CCCeeEEEe--c--CChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCChhHHH
Q psy16503 80 HPNVKVFIS--H--GGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSYKK 155 (244)
Q Consensus 80 h~~~~l~It--h--gG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~~y~~ 155 (244)
..+|+++. + |-..++.||+++|+|+|+.+..+ +...+.+...|..++.+ +.+++.++|.++++|+..++
T Consensus 271 -~~adi~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~~g----~~e~i~~~~~g~~~~~~--d~~~la~~i~~l~~~~~~~~ 343 (374)
T TIGR03088 271 -QALDLFVLPSLAEGISNTILEAMASGLPVIATAVGG----NPELVQHGVTGALVPPG--DAVALARALQPYVSDPAARR 343 (374)
T ss_pred -HhcCEEEeccccccCchHHHHHHHcCCCEEEcCCCC----cHHHhcCCCceEEeCCC--CHHHHHHHHHHHHhCHHHHH
Confidence 67888884 2 44679999999999999976533 44455555678888654 57899999999999887666
Q ss_pred HHHHHHHHHhCCCCChHHHH
Q psy16503 156 RAEKVARLFQDRPMPPLDTA 175 (244)
Q Consensus 156 ~a~~~s~~~~~~~~~~~~~a 175 (244)
.+.+.++....+..+....+
T Consensus 344 ~~~~~a~~~~~~~fs~~~~~ 363 (374)
T TIGR03088 344 AHGAAGRARAEQQFSINAMV 363 (374)
T ss_pred HHHHHHHHHHHHhCCHHHHH
Confidence 66555544332224433333
No 75
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.11 E-value=8.8e-05 Score=66.09 Aligned_cols=154 Identities=13% Similarity=0.105 Sum_probs=104.8
Q ss_pred ceEEEEcCCCCCCCCCCHHHHHHHHHHHhcC-CC-eEEEEecCCC-----------------------CCCCCCCEEEec
Q psy16503 16 GVIYFSMGSIIQGKSFPSDKRKAFLRAFEQI-PQ-RVIWKWEGEN-----------------------MSGKIDKILLKS 70 (244)
Q Consensus 16 ~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~-~~-~viw~~~~~~-----------------------~~~~~~nv~~~~ 70 (244)
..+.|..+|... .++..-....++.+. |. ..||.-...+ .+....+|.+.+
T Consensus 231 r~v~iaaSTH~G----Eeei~l~~~~~l~~~~~~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~~~~~~~tdV~l~D 306 (419)
T COG1519 231 RPVWVAASTHEG----EEEIILDAHQALKKQFPNLLLILVPRHPERFKAVENLLKRKGLSVTRRSQGDPPFSDTDVLLGD 306 (419)
T ss_pred CceEEEecCCCc----hHHHHHHHHHHHHhhCCCceEEEecCChhhHHHHHHHHHHcCCeEEeecCCCCCCCCCcEEEEe
Confidence 467777777632 345455555555443 33 5666533210 112234677777
Q ss_pred cCChhhhhCCCCeeE------EEecCChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHH
Q psy16503 71 WAPQRDILDHPNVKV------FISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVAL 144 (244)
Q Consensus 71 ~~pq~~lL~h~~~~l------~IthgG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai 144 (244)
-+=..-++. .-+|+ ++.+||.| ..|++++|+|+|.=|....|.+-++++.+.|+|+.++ +++.+.+++
T Consensus 307 tmGEL~l~y-~~adiAFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~~ga~~~v~----~~~~l~~~v 380 (419)
T COG1519 307 TMGELGLLY-GIADIAFVGGSLVPIGGHN-PLEPAAFGTPVIFGPYTFNFSDIAERLLQAGAGLQVE----DADLLAKAV 380 (419)
T ss_pred cHhHHHHHH-hhccEEEECCcccCCCCCC-hhhHHHcCCCEEeCCccccHHHHHHHHHhcCCeEEEC----CHHHHHHHH
Confidence 654333332 34444 34589987 8899999999999999999999999999999999997 378899999
Q ss_pred HHHhCChhHHHHHHHHHHHHhCCCCChHHHHHHHH
Q psy16503 145 RTVLGNPSYKKRAEKVARLFQDRPMPPLDTAIYWI 179 (244)
Q Consensus 145 ~~ll~~~~y~~~a~~~s~~~~~~~~~~~~~a~~~i 179 (244)
..+++|+..++++.+-...+-.+...+.++....+
T Consensus 381 ~~l~~~~~~r~~~~~~~~~~v~~~~gal~r~l~~l 415 (419)
T COG1519 381 ELLLADEDKREAYGRAGLEFLAQNRGALARTLEAL 415 (419)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 99998888888887776666554445555554443
No 76
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.09 E-value=7.1e-05 Score=65.19 Aligned_cols=136 Identities=14% Similarity=0.194 Sum_probs=81.4
Q ss_pred CCceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCC-CeEEEEecCCC---------CCCCCCCEEEeccCCh-hhhhCCCC
Q psy16503 14 VNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIP-QRVIWKWEGEN---------MSGKIDKILLKSWAPQ-RDILDHPN 82 (244)
Q Consensus 14 ~~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~-~~viw~~~~~~---------~~~~~~nv~~~~~~pq-~~lL~h~~ 82 (244)
+++.+++..|+.... ......++.+.....+.+ .++++.-++.. ..+..+|+.+.++..+ .+++ ..
T Consensus 186 ~~~~~~l~~g~~~~~-kg~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~--~~ 262 (360)
T cd04951 186 NDTFVILAVGRLVEA-KDYPNLLKAFAKLLSDYLDIKLLIAGDGPLRATLERLIKALGLSNRVKLLGLRDDIAAYY--NA 262 (360)
T ss_pred CCCEEEEEEeeCchh-cCcHHHHHHHHHHHhhCCCeEEEEEcCCCcHHHHHHHHHhcCCCCcEEEecccccHHHHH--Hh
Confidence 346777888876432 222333333332222222 35665433321 1134568999887654 3566 66
Q ss_pred eeEEEec----CChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHh-CChhHHHHH
Q psy16503 83 VKVFISH----GGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVL-GNPSYKKRA 157 (244)
Q Consensus 83 ~~l~Ith----gG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll-~~~~y~~~a 157 (244)
+++++.- |..+++.||+++|+|+|+... ..+...+.+ .|..+..+ +.+++.++|.+++ .++.+++.+
T Consensus 263 ad~~v~~s~~e~~~~~~~Ea~a~G~PvI~~~~----~~~~e~i~~--~g~~~~~~--~~~~~~~~i~~ll~~~~~~~~~~ 334 (360)
T cd04951 263 ADLFVLSSAWEGFGLVVAEAMACELPVVATDA----GGVREVVGD--SGLIVPIS--DPEALANKIDEILKMSGEERDII 334 (360)
T ss_pred hceEEecccccCCChHHHHHHHcCCCEEEecC----CChhhEecC--CceEeCCC--CHHHHHHHHHHHHhCCHHHHHHH
Confidence 7777764 225789999999999998643 334444444 34444433 6889999999998 456666666
Q ss_pred HHH
Q psy16503 158 EKV 160 (244)
Q Consensus 158 ~~~ 160 (244)
.+.
T Consensus 335 ~~~ 337 (360)
T cd04951 335 GAR 337 (360)
T ss_pred HHH
Confidence 554
No 77
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=98.09 E-value=0.00011 Score=65.78 Aligned_cols=95 Identities=16% Similarity=0.223 Sum_probs=69.0
Q ss_pred CCCEEEeccCChhh---hhCCCCeeEEEe--c-CC-hhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCC
Q psy16503 63 IDKILLKSWAPQRD---ILDHPNVKVFIS--H-GG-FLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQI 135 (244)
Q Consensus 63 ~~nv~~~~~~pq~~---lL~h~~~~l~It--h-gG-~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~ 135 (244)
.++|.+.+++|+.+ ++ ..+++++. . .| ..++.||+++|+|+|+.... .....+.+...|..++..
T Consensus 280 ~~~V~f~G~v~~~~~~~~l--~~adv~v~~s~~e~~~~~llEAmA~G~PVIas~~~----g~~e~i~~~~~G~lv~~~-- 351 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALL--QVSDVHVYLTYPFVLSWSLLEAMACGCLVVGSDTA----PVREVITDGENGLLVDFF-- 351 (396)
T ss_pred cceEEEeCCCCHHHHHHHH--HhCcEEEEcCcccccchHHHHHHHCCCCEEEcCCC----CchhhcccCCceEEcCCC--
Confidence 46899999998765 45 45677664 2 22 35899999999999997542 344555555678888655
Q ss_pred CHHHHHHHHHHHhCChhHHHHHHHHHHHHh
Q psy16503 136 TEETVLVALRTVLGNPSYKKRAEKVARLFQ 165 (244)
Q Consensus 136 ~~~~l~~ai~~ll~~~~y~~~a~~~s~~~~ 165 (244)
+.+++.++|.++++|++.+.++.+.+....
T Consensus 352 d~~~la~~i~~ll~~~~~~~~l~~~ar~~~ 381 (396)
T cd03818 352 DPDALAAAVIELLDDPARRARLRRAARRTA 381 (396)
T ss_pred CHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 589999999999999887777666665443
No 78
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.08 E-value=0.00014 Score=63.29 Aligned_cols=95 Identities=22% Similarity=0.343 Sum_probs=69.3
Q ss_pred CCCCEEEeccCChh---hhhCCCCeeEEEe----------cCChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCcee
Q psy16503 62 KIDKILLKSWAPQR---DILDHPNVKVFIS----------HGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGV 128 (244)
Q Consensus 62 ~~~nv~~~~~~pq~---~lL~h~~~~l~It----------hgG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~ 128 (244)
.++|+.+.+++|+. +++ .++++++. -|..+++.||+++|+|+|+.+..+ ....+.+...|.
T Consensus 234 ~~~~v~~~g~~~~~~l~~~~--~~adi~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~----~~~~i~~~~~g~ 307 (355)
T cd03799 234 LEDRVTLLGAKSQEEVRELL--RAADLFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVSG----IPELVEDGETGL 307 (355)
T ss_pred CCCeEEECCcCChHHHHHHH--HhCCEEEecceecCCCCccCccHHHHHHHHcCCCEEecCCCC----cchhhhCCCceE
Confidence 46789999999755 355 56777777 344689999999999999976532 223444444888
Q ss_pred ecCCCCCCHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy16503 129 TLPYDQITEETVLVALRTVLGNPSYKKRAEKVARLF 164 (244)
Q Consensus 129 ~l~~~~~~~~~l~~ai~~ll~~~~y~~~a~~~s~~~ 164 (244)
.++.+ +.+++.++|.++++|+....++.+.++..
T Consensus 308 ~~~~~--~~~~l~~~i~~~~~~~~~~~~~~~~a~~~ 341 (355)
T cd03799 308 LVPPG--DPEALADAIERLLDDPELRREMGEAGRAR 341 (355)
T ss_pred EeCCC--CHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 88654 68999999999999987666666555443
No 79
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.05 E-value=0.00041 Score=61.52 Aligned_cols=153 Identities=18% Similarity=0.207 Sum_probs=93.1
Q ss_pred CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCC--CeEEEEecCCCC--------------CCCCCCEEEe-ccCChh--
Q psy16503 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIP--QRVIWKWEGENM--------------SGKIDKILLK-SWAPQR-- 75 (244)
Q Consensus 15 ~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~--~~viw~~~~~~~--------------~~~~~nv~~~-~~~pq~-- 75 (244)
++.+++..|.... .+-...+++++..++ .++++..++... .....++.+. .++|..
T Consensus 200 ~~~~i~~~Grl~~-----~Kg~~~li~a~~~l~~~~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 274 (388)
T TIGR02149 200 SRPYILFVGRITR-----QKGVPHLLDAVHYIPKDVQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEEL 274 (388)
T ss_pred CceEEEEEccccc-----ccCHHHHHHHHHHHhhcCcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHH
Confidence 3456667777743 233555666666653 355544333110 1112346554 567654
Q ss_pred -hhhCCCCeeEEEec----CChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCC----HHHHHHHHHH
Q psy16503 76 -DILDHPNVKVFISH----GGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQIT----EETVLVALRT 146 (244)
Q Consensus 76 -~lL~h~~~~l~Ith----gG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~----~~~l~~ai~~ 146 (244)
+++ ..+|+++.- |...++.||+++|+|+|+.... .....+.+.+.|..++.++.+ .+++.++|.+
T Consensus 275 ~~~~--~~aDv~v~ps~~e~~g~~~lEA~a~G~PvI~s~~~----~~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~ 348 (388)
T TIGR02149 275 VELL--SNAEVFVCPSIYEPLGIVNLEAMACGTPVVASATG----GIPEVVVDGETGFLVPPDNSDADGFQAELAKAINI 348 (388)
T ss_pred HHHH--HhCCEEEeCCccCCCChHHHHHHHcCCCEEEeCCC----CHHHHhhCCCceEEcCCCCCcccchHHHHHHHHHH
Confidence 456 678888863 3346789999999999997653 344556666779998765432 2889999999
Q ss_pred HhCChhHHHHHHHHHHHHhCCCCChHHHHHHH
Q psy16503 147 VLGNPSYKKRAEKVARLFQDRPMPPLDTAIYW 178 (244)
Q Consensus 147 ll~~~~y~~~a~~~s~~~~~~~~~~~~~a~~~ 178 (244)
+++|+.-++++.+.+.....+..+....+..+
T Consensus 349 l~~~~~~~~~~~~~a~~~~~~~~s~~~~~~~~ 380 (388)
T TIGR02149 349 LLADPELAKKMGIAGRKRAEEEFSWGSIAKKT 380 (388)
T ss_pred HHhCHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 99998877776666554433224433333333
No 80
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=97.99 E-value=0.00015 Score=62.91 Aligned_cols=94 Identities=15% Similarity=0.221 Sum_probs=67.5
Q ss_pred CCCCCEEEeccCChh---hhhCCCCeeEEEec----CChhhHHHHHHhCCcEEecCCC--cchhhHHHHHHHcCceeecC
Q psy16503 61 GKIDKILLKSWAPQR---DILDHPNVKVFISH----GGFLGTTEALYSGVPIIGIPMF--GDQKANIRVVEKAGFGVTLP 131 (244)
Q Consensus 61 ~~~~nv~~~~~~pq~---~lL~h~~~~l~Ith----gG~~s~~Eal~~gvP~i~vP~~--~dQ~~na~~~~~~G~g~~l~ 131 (244)
..++++.+.+++|+. +++ ..+|+++.- |..+++.||+++|+|+|+.... .|.. . ..|..+.
T Consensus 250 ~~~~~v~~~g~~~~~~~~~~~--~~~d~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~~~e~~------~--~~~~~~~ 319 (365)
T cd03809 250 GLGDRVRFLGYVSDEELAALY--RGARAFVFPSLYEGFGLPVLEAMACGTPVIASNISSLPEVA------G--DAALYFD 319 (365)
T ss_pred CCCCeEEECCCCChhHHHHHH--hhhhhhcccchhccCCCCHHHHhcCCCcEEecCCCCcccee------c--CceeeeC
Confidence 356799999999876 455 567776643 3456899999999999996542 2322 1 2355554
Q ss_pred CCCCCHHHHHHHHHHHhCChhHHHHHHHHHHHHhC
Q psy16503 132 YDQITEETVLVALRTVLGNPSYKKRAEKVARLFQD 166 (244)
Q Consensus 132 ~~~~~~~~l~~ai~~ll~~~~y~~~a~~~s~~~~~ 166 (244)
.+ +.+++.++|.++++|+..+..+.+.+.....
T Consensus 320 ~~--~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~ 352 (365)
T cd03809 320 PL--DPEALAAAIERLLEDPALREELRERGLARAK 352 (365)
T ss_pred CC--CHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 43 6899999999999999988888777765443
No 81
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=97.97 E-value=2.4e-05 Score=69.17 Aligned_cols=154 Identities=12% Similarity=0.103 Sum_probs=98.5
Q ss_pred CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCC---eEEEEecCCC--CCC---CCCCEEEeccCChhhhhCCCCeeEE
Q psy16503 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQ---RVIWKWEGEN--MSG---KIDKILLKSWAPQRDILDHPNVKVF 86 (244)
Q Consensus 15 ~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~---~viw~~~~~~--~~~---~~~nv~~~~~~pq~~lL~h~~~~l~ 86 (244)
+++|.+--||... --...+..++++...+.. .+++...... ... ....+.+.+ +..+++ ..+|+.
T Consensus 167 ~~~I~llPGSR~~---Ei~~llP~~~~aa~~L~~~~~~~~i~~a~~~~~i~~~~~~~~~~~~~~--~~~~~m--~~aDla 239 (347)
T PRK14089 167 EGTIAFMPGSRKS---EIKRLMPIFKELAKKLEGKEKILVVPSFFKGKDLKEIYGDISEFEISY--DTHKAL--LEAEFA 239 (347)
T ss_pred CCEEEEECCCCHH---HHHHHHHHHHHHHHHHhhcCcEEEEeCCCcHHHHHHHHhcCCCcEEec--cHHHHH--HhhhHH
Confidence 4688888888843 112445544566554432 2333222110 000 111233332 345677 789999
Q ss_pred EecCChhhHHHHHHhCCcEEec-CCCcchhhHHHHHH---HcCceeec-------------CCCCCCHHHHHHHHHHHhC
Q psy16503 87 ISHGGFLGTTEALYSGVPIIGI-PMFGDQKANIRVVE---KAGFGVTL-------------PYDQITEETVLVALRTVLG 149 (244)
Q Consensus 87 IthgG~~s~~Eal~~gvP~i~v-P~~~dQ~~na~~~~---~~G~g~~l-------------~~~~~~~~~l~~ai~~ll~ 149 (244)
|+..|..|+ |++..|+|+++. ..-.-|..||+++. ..|++-.+ ..+++|++.|.+++.+. .
T Consensus 240 l~~SGT~TL-E~al~g~P~Vv~Yk~~~lty~iak~lv~~~~igL~Nii~~~~~~~~vvPEllQ~~~t~~~la~~i~~~-~ 317 (347)
T PRK14089 240 FICSGTATL-EAALIGTPFVLAYKAKAIDYFIAKMFVKLKHIGLANIFFDFLGKEPLHPELLQEFVTVENLLKAYKEM-D 317 (347)
T ss_pred HhcCcHHHH-HHHHhCCCEEEEEeCCHHHHHHHHHHHcCCeeehHHHhcCCCcccccCchhhcccCCHHHHHHHHHHH-H
Confidence 999999988 999999999884 34568999999999 56776665 34678999999999883 3
Q ss_pred ChhHHHHHHHHHHHHhCCCCChHHHHHHHHH
Q psy16503 150 NPSYKKRAEKVARLFQDRPMPPLDTAIYWIE 180 (244)
Q Consensus 150 ~~~y~~~a~~~s~~~~~~~~~~~~~a~~~ie 180 (244)
..+.++...++.+.+. .++.++++.++.
T Consensus 318 ~~~~~~~~~~l~~~l~---~~a~~~~A~~i~ 345 (347)
T PRK14089 318 REKFFKKSKELREYLK---HGSAKNVAKILK 345 (347)
T ss_pred HHHHHHHHHHHHHHhc---CCHHHHHHHHHh
Confidence 3456666666666663 266777776654
No 82
>PRK10307 putative glycosyl transferase; Provisional
Probab=97.96 E-value=0.00076 Score=60.75 Aligned_cols=142 Identities=17% Similarity=0.249 Sum_probs=87.3
Q ss_pred CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcC---C-CeEEEEecCCC----CC-----CCCCCEEEeccCChhh---hh
Q psy16503 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQI---P-QRVIWKWEGEN----MS-----GKIDKILLKSWAPQRD---IL 78 (244)
Q Consensus 15 ~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~---~-~~viw~~~~~~----~~-----~~~~nv~~~~~~pq~~---lL 78 (244)
++.+++..|+... .+-.+.+++++..+ + .+++. +|+.. +. ...+|+.+.+++|..+ ++
T Consensus 228 ~~~~i~~~G~l~~-----~kg~~~li~a~~~l~~~~~~~l~i-vG~g~~~~~l~~~~~~~~l~~v~f~G~~~~~~~~~~~ 301 (412)
T PRK10307 228 GKKIVLYSGNIGE-----KQGLELVIDAARRLRDRPDLIFVI-CGQGGGKARLEKMAQCRGLPNVHFLPLQPYDRLPALL 301 (412)
T ss_pred CCEEEEEcCcccc-----ccCHHHHHHHHHHhccCCCeEEEE-ECCChhHHHHHHHHHHcCCCceEEeCCCCHHHHHHHH
Confidence 4567777888743 23344455555543 3 24443 44311 10 1124799999998654 56
Q ss_pred CCCCeeEEEe--c-CC-----hhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCC
Q psy16503 79 DHPNVKVFIS--H-GG-----FLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGN 150 (244)
Q Consensus 79 ~h~~~~l~It--h-gG-----~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~ 150 (244)
..+|+++. . ++ .+.+.|++++|+|+|+.+.-+.. ....+. +.|+.++.+ +.+++.++|.++++|
T Consensus 302 --~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i~--~~G~~~~~~--d~~~la~~i~~l~~~ 373 (412)
T PRK10307 302 --KMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLVE--GIGVCVEPE--SVEALVAAIAALARQ 373 (412)
T ss_pred --HhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHHh--CCcEEeCCC--CHHHHHHHHHHHHhC
Confidence 55666543 3 22 23478999999999998654321 112222 678888755 579999999999999
Q ss_pred hhHHHHHHHHHHHHhCCCCC
Q psy16503 151 PSYKKRAEKVARLFQDRPMP 170 (244)
Q Consensus 151 ~~y~~~a~~~s~~~~~~~~~ 170 (244)
+..++++.+.+.....+..+
T Consensus 374 ~~~~~~~~~~a~~~~~~~fs 393 (412)
T PRK10307 374 ALLRPKLGTVAREYAERTLD 393 (412)
T ss_pred HHHHHHHHHHHHHHHHHHcC
Confidence 88777777766654433344
No 83
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.95 E-value=0.00019 Score=63.42 Aligned_cols=142 Identities=18% Similarity=0.233 Sum_probs=87.3
Q ss_pred CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCC-eEEEEecCCC---------CCCCCCCEEEeccCChh-hhhCCCCe
Q psy16503 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQ-RVIWKWEGEN---------MSGKIDKILLKSWAPQR-DILDHPNV 83 (244)
Q Consensus 15 ~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~-~viw~~~~~~---------~~~~~~nv~~~~~~pq~-~lL~h~~~ 83 (244)
++..++..|..... ......++.+.....+.+. ++.+.-.+.. ..+.+.++.+.++.++. +++ ..+
T Consensus 203 ~~~~i~~vgrl~~~-K~~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~--~~a 279 (372)
T cd04949 203 KPHKIITVARLAPE-KQLDQLIKAFAKVVKQVPDATLDIYGYGDEEEKLKELIEELGLEDYVFLKGYTRDLDEVY--QKA 279 (372)
T ss_pred CCCeEEEEEccCcc-cCHHHHHHHHHHHHHhCCCcEEEEEEeCchHHHHHHHHHHcCCcceEEEcCCCCCHHHHH--hhh
Confidence 34566777776432 2223334333333333343 5544322211 12346688888876655 456 556
Q ss_pred eEEEe--c--CChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCChhHHHHHHH
Q psy16503 84 KVFIS--H--GGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSYKKRAEK 159 (244)
Q Consensus 84 ~l~It--h--gG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~~y~~~a~~ 159 (244)
+++|. + |...++.||+++|+|+|+...-. .....+.+...|..++.. +.+++.++|.++++|++..+.+.+
T Consensus 280 d~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~~~~G~lv~~~--d~~~la~~i~~ll~~~~~~~~~~~ 354 (372)
T cd04949 280 QLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIEDGENGYLVPKG--DIEALAEAIIELLNDPKLLQKFSE 354 (372)
T ss_pred hEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHcccCCCceEeCCC--cHHHHHHHHHHHHcCHHHHHHHHH
Confidence 66664 3 44679999999999999975421 133455566788888654 589999999999999876666665
Q ss_pred HHHHH
Q psy16503 160 VARLF 164 (244)
Q Consensus 160 ~s~~~ 164 (244)
.+...
T Consensus 355 ~a~~~ 359 (372)
T cd04949 355 AAYEN 359 (372)
T ss_pred HHHHH
Confidence 55444
No 84
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=97.93 E-value=0.0013 Score=58.26 Aligned_cols=155 Identities=18% Similarity=0.192 Sum_probs=92.3
Q ss_pred CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCC-eEEEEecCCC--------------CCCCCCCEEEeccC--Chh--
Q psy16503 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQ-RVIWKWEGEN--------------MSGKIDKILLKSWA--PQR-- 75 (244)
Q Consensus 15 ~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~-~viw~~~~~~--------------~~~~~~nv~~~~~~--pq~-- 75 (244)
+..+++..|.....+. ...+++.+.......+. ++++.-++.. ..+..+++.+..+. +..
T Consensus 189 ~~~~i~~vgrl~~~Kg-~~~ll~a~~~l~~~~~~~~l~i~G~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 267 (372)
T cd03792 189 ERPYITQVSRFDPWKD-PFGVIDAYRKVKERVPDPQLVLVGSGATDDPEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEV 267 (372)
T ss_pred CCcEEEEEeccccccC-cHHHHHHHHHHHhhCCCCEEEEEeCCCCCCchhHHHHHHHHHHhCCCCCeEEEecCCCCHHHH
Confidence 4567777888754222 23333333332222233 5554333211 11234578888776 433
Q ss_pred -hhhCCCCeeEEEec----CChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCC
Q psy16503 76 -DILDHPNVKVFISH----GGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGN 150 (244)
Q Consensus 76 -~lL~h~~~~l~Ith----gG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~ 150 (244)
+++ ..+|+|+.- |-..++.||+++|+|+|+.+..+ ....+.+.+.|...+ +.+.+..+|.+++.|
T Consensus 268 ~~~~--~~ad~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~~----~~~~i~~~~~g~~~~----~~~~~a~~i~~ll~~ 337 (372)
T cd03792 268 NALQ--RASTVVLQKSIREGFGLTVTEALWKGKPVIAGPVGG----IPLQIEDGETGFLVD----TVEEAAVRILYLLRD 337 (372)
T ss_pred HHHH--HhCeEEEeCCCccCCCHHHHHHHHcCCCEEEcCCCC----chhhcccCCceEEeC----CcHHHHHHHHHHHcC
Confidence 455 678898864 32469999999999999976432 223455556677664 356788899999999
Q ss_pred hhHHHHHHHHHHHHhCCCCChHHHHHHHHH
Q psy16503 151 PSYKKRAEKVARLFQDRPMPPLDTAIYWIE 180 (244)
Q Consensus 151 ~~y~~~a~~~s~~~~~~~~~~~~~a~~~ie 180 (244)
++.++.+.+.+.....+..+-...+..|++
T Consensus 338 ~~~~~~~~~~a~~~~~~~~s~~~~~~~~~~ 367 (372)
T cd03792 338 PELRRKMGANAREHVRENFLITRHLKDYLY 367 (372)
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHHHHHHH
Confidence 888887777766643323454444444443
No 85
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=97.92 E-value=0.00022 Score=60.91 Aligned_cols=131 Identities=18% Similarity=0.313 Sum_probs=84.3
Q ss_pred CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCC-----CeEEEEecCCC----------CCCCCCCEEEeccCChh-hhh
Q psy16503 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIP-----QRVIWKWEGEN----------MSGKIDKILLKSWAPQR-DIL 78 (244)
Q Consensus 15 ~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~-----~~viw~~~~~~----------~~~~~~nv~~~~~~pq~-~lL 78 (244)
++.+++..|+... .+-...+++++..+. .++++ +|... ..+..+++.+.++.+.. +++
T Consensus 188 ~~~~i~~~g~~~~-----~k~~~~~i~~~~~l~~~~~~~~l~i-~G~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~ 261 (353)
T cd03811 188 DGPVILAVGRLSP-----QKGFDTLIRAFALLRKEGPDARLVI-LGDGPLREELEALAKELGLADRVHFLGFQSNPYPYL 261 (353)
T ss_pred CceEEEEEecchh-----hcChHHHHHHHHHhhhcCCCceEEE-EcCCccHHHHHHHHHhcCCCccEEEecccCCHHHHH
Confidence 4677888888743 222334444444432 24444 34311 11346789999987654 566
Q ss_pred CCCCeeEEEec----CChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHH---HHHHHHHhCCh
Q psy16503 79 DHPNVKVFISH----GGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETV---LVALRTVLGNP 151 (244)
Q Consensus 79 ~h~~~~l~Ith----gG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l---~~ai~~ll~~~ 151 (244)
..++++|.- |..+++.||+++|+|+|+.... .....+.+.+.|...+.+ +.+.+ .+++.++..++
T Consensus 262 --~~~d~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~~----~~~e~i~~~~~g~~~~~~--~~~~~~~~~~~i~~~~~~~ 333 (353)
T cd03811 262 --KAADLFVLSSRYEGFPNVLLEAMALGTPVVATDCP----GPREILEDGENGLLVPVG--DEAALAAAALALLDLLLDP 333 (353)
T ss_pred --HhCCEEEeCcccCCCCcHHHHHHHhCCCEEEcCCC----ChHHHhcCCCceEEECCC--CHHHHHHHHHHHHhccCCh
Confidence 567887742 4467899999999999986543 445677777889988765 45666 67777777777
Q ss_pred hHHHHHHH
Q psy16503 152 SYKKRAEK 159 (244)
Q Consensus 152 ~y~~~a~~ 159 (244)
+.++++.+
T Consensus 334 ~~~~~~~~ 341 (353)
T cd03811 334 ELRERLAA 341 (353)
T ss_pred HHHHHHHH
Confidence 66666655
No 86
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=97.92 E-value=0.00052 Score=60.96 Aligned_cols=94 Identities=18% Similarity=0.209 Sum_probs=68.6
Q ss_pred CCCCEEEeccCChh---hhhCCCCeeEEEec----CChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCC
Q psy16503 62 KIDKILLKSWAPQR---DILDHPNVKVFISH----GGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQ 134 (244)
Q Consensus 62 ~~~nv~~~~~~pq~---~lL~h~~~~l~Ith----gG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~ 134 (244)
..++|.+.+++|.. +++ ..+++++.. |-..++.||+++|+|+|+.-..+ ....+.+.+.|...+.
T Consensus 278 l~~~V~f~g~~~~~~~~~~l--~~ad~~l~~s~~E~~g~~~lEAma~G~PvI~s~~~~----~~e~i~~~~~g~~~~~-- 349 (392)
T cd03805 278 LEDQVIFLPSISDSQKELLL--SSARALLYTPSNEHFGIVPLEAMYAGKPVIACNSGG----PLETVVDGETGFLCEP-- 349 (392)
T ss_pred CCceEEEeCCCChHHHHHHH--hhCeEEEECCCcCCCCchHHHHHHcCCCEEEECCCC----cHHHhccCCceEEeCC--
Confidence 45789999999876 456 677887742 22468899999999999974432 3344555567887753
Q ss_pred CCHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy16503 135 ITEETVLVALRTVLGNPSYKKRAEKVARLF 164 (244)
Q Consensus 135 ~~~~~l~~ai~~ll~~~~y~~~a~~~s~~~ 164 (244)
+.+++.++|.++++|++.++++.+.+...
T Consensus 350 -~~~~~a~~i~~l~~~~~~~~~~~~~a~~~ 378 (392)
T cd03805 350 -TPEEFAEAMLKLANDPDLADRMGAAGRKR 378 (392)
T ss_pred -CHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence 68999999999999987776666655443
No 87
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=97.89 E-value=0.00056 Score=62.41 Aligned_cols=97 Identities=16% Similarity=0.105 Sum_probs=68.7
Q ss_pred CCCCEEEeccCChhhh---hCCC--CeeEEEec----CChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCC
Q psy16503 62 KIDKILLKSWAPQRDI---LDHP--NVKVFISH----GGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPY 132 (244)
Q Consensus 62 ~~~nv~~~~~~pq~~l---L~h~--~~~l~Ith----gG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~ 132 (244)
..++|.+.+++++.++ +... .+|+|+.. |-..++.||+++|+|+|+...-+ ....+.+...|..++.
T Consensus 315 l~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~~E~fg~~~lEAma~G~PvV~s~~gg----~~eiv~~~~~G~lv~~ 390 (439)
T TIGR02472 315 LYGKVAYPKHHRPDDVPELYRLAARSRGIFVNPALTEPFGLTLLEAAACGLPIVATDDGG----PRDIIANCRNGLLVDV 390 (439)
T ss_pred CCceEEecCCCCHHHHHHHHHHHhhcCCEEecccccCCcccHHHHHHHhCCCEEEeCCCC----cHHHhcCCCcEEEeCC
Confidence 3567888888776654 4211 23788763 33469999999999999986533 3444555567888876
Q ss_pred CCCCHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy16503 133 DQITEETVLVALRTVLGNPSYKKRAEKVARLF 164 (244)
Q Consensus 133 ~~~~~~~l~~ai~~ll~~~~y~~~a~~~s~~~ 164 (244)
. +.+++.++|.++++|+..++++.+.+...
T Consensus 391 ~--d~~~la~~i~~ll~~~~~~~~~~~~a~~~ 420 (439)
T TIGR02472 391 L--DLEAIASALEDALSDSSQWQLWSRNGIEG 420 (439)
T ss_pred C--CHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 5 57899999999999988777766665543
No 88
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.88 E-value=0.00082 Score=61.98 Aligned_cols=141 Identities=18% Similarity=0.260 Sum_probs=88.4
Q ss_pred CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCC-CC-------------CCCCCCEEEeccCChhhhhCC
Q psy16503 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGE-NM-------------SGKIDKILLKSWAPQRDILDH 80 (244)
Q Consensus 15 ~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~-~~-------------~~~~~nv~~~~~~pq~~lL~h 80 (244)
++.+++..|.....+. ...+++.+....+..+.--++.+|+. +. .+..+||.+.+...-.+++
T Consensus 292 ~~~~i~~vGrl~~~Kg-~~~li~a~~~l~~~~p~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G~~~v~~~l-- 368 (475)
T cd03813 292 EPPVVGLIGRVVPIKD-IKTFIRAAAIVRKKIPDAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTGFQNVKEYL-- 368 (475)
T ss_pred CCcEEEEEeccccccC-HHHHHHHHHHHHHhCCCeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcCCccHHHHH--
Confidence 4567777788754221 22333333222233343224445532 10 1245789998865566777
Q ss_pred CCeeEEEec----CChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHc------CceeecCCCCCCHHHHHHHHHHHhCC
Q psy16503 81 PNVKVFISH----GGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKA------GFGVTLPYDQITEETVLVALRTVLGN 150 (244)
Q Consensus 81 ~~~~l~Ith----gG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~------G~g~~l~~~~~~~~~l~~ai~~ll~~ 150 (244)
+.+++++.- |-.+++.||+++|+|+|+-... .....+.+. ..|..++.. +.+++.++|.++++|
T Consensus 369 ~~aDv~vlpS~~Eg~p~~vlEAma~G~PVVatd~g----~~~elv~~~~~~~~g~~G~lv~~~--d~~~la~ai~~ll~~ 442 (475)
T cd03813 369 PKLDVLVLTSISEGQPLVILEAMAAGIPVVATDVG----SCRELIEGADDEALGPAGEVVPPA--DPEALARAILRLLKD 442 (475)
T ss_pred HhCCEEEeCchhhcCChHHHHHHHcCCCEEECCCC----ChHHHhcCCcccccCCceEEECCC--CHHHHHHHHHHHhcC
Confidence 678887753 4457999999999999996442 233344442 268887654 589999999999999
Q ss_pred hhHHHHHHHHHHHH
Q psy16503 151 PSYKKRAEKVARLF 164 (244)
Q Consensus 151 ~~y~~~a~~~s~~~ 164 (244)
+..++++.+.+...
T Consensus 443 ~~~~~~~~~~a~~~ 456 (475)
T cd03813 443 PELRRAMGEAGRKR 456 (475)
T ss_pred HHHHHHHHHHHHHH
Confidence 88777776666543
No 89
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=97.86 E-value=0.00027 Score=61.66 Aligned_cols=139 Identities=15% Similarity=0.138 Sum_probs=85.3
Q ss_pred CCceEEEEcCCCCCCCCCCHHHHHHHHHHHhc-CCC-eEEEEecCCC---------CCCCCCCEEEeccCCh-hhhhCCC
Q psy16503 14 VNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQ-IPQ-RVIWKWEGEN---------MSGKIDKILLKSWAPQ-RDILDHP 81 (244)
Q Consensus 14 ~~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~-~~~-~viw~~~~~~---------~~~~~~nv~~~~~~pq-~~lL~h~ 81 (244)
+++.+++..|+...... .+.+-..+..+.+ .+. ++++.-++.. ..+.++++.+.++..+ .+++ .
T Consensus 190 ~~~~~i~~vGr~~~~Kg--~~~li~a~~~l~~~~~~~~l~ivG~g~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~--~ 265 (358)
T cd03812 190 EDKFVIGHVGRFSEQKN--HEFLIEIFAELLKKNPNAKLLLVGDGELEEEIKKKVKELGLEDKVIFLGVRNDVPELL--Q 265 (358)
T ss_pred CCCEEEEEEeccccccC--hHHHHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhcCCCCcEEEecccCCHHHHH--H
Confidence 35677888888743221 2222222222222 222 4444322221 1235678999988544 3566 6
Q ss_pred CeeEEEec----CChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCChhHHHHH
Q psy16503 82 NVKVFISH----GGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSYKKRA 157 (244)
Q Consensus 82 ~~~l~Ith----gG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~~y~~~a 157 (244)
.+++++.- |-.+++.||+++|+|+|+....+. ...+.+ +.|.....+ +.+++.++|.++++|+..++++
T Consensus 266 ~adi~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~~----~~~i~~-~~~~~~~~~--~~~~~a~~i~~l~~~~~~~~~~ 338 (358)
T cd03812 266 AMDVFLFPSLYEGLPLVLIEAQASGLPCILSDTITK----EVDLTD-LVKFLSLDE--SPEIWAEEILKLKSEDRRERSS 338 (358)
T ss_pred hcCEEEecccccCCCHHHHHHHHhCCCEEEEcCCch----hhhhcc-CccEEeCCC--CHHHHHHHHHHHHhCcchhhhh
Confidence 78888763 456899999999999999765442 223334 555555433 4799999999999999888777
Q ss_pred HHHHHH
Q psy16503 158 EKVARL 163 (244)
Q Consensus 158 ~~~s~~ 163 (244)
...+..
T Consensus 339 ~~~~~~ 344 (358)
T cd03812 339 ESIKKK 344 (358)
T ss_pred hhhhhc
Confidence 665443
No 90
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=97.85 E-value=0.0014 Score=57.10 Aligned_cols=96 Identities=19% Similarity=0.161 Sum_probs=66.5
Q ss_pred CCCCEEEeccCChh-hhhCCCCeeEEEecC-----ChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCC
Q psy16503 62 KIDKILLKSWAPQR-DILDHPNVKVFISHG-----GFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQI 135 (244)
Q Consensus 62 ~~~nv~~~~~~pq~-~lL~h~~~~l~Ithg-----G~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~ 135 (244)
..+++.+.++.+.. +++ ..+++++.-. ..+++.||+++|+|+|+....+ ....+.+.+.|..++.+
T Consensus 244 ~~~~v~~~g~~~~~~~~l--~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~~~~----~~e~i~~~~~g~~~~~~-- 315 (355)
T cd03819 244 LQDRVTFVGHCSDMPAAY--ALADIVVSASTEPEAFGRTAVEAQAMGRPVIASDHGG----ARETVRPGETGLLVPPG-- 315 (355)
T ss_pred CcceEEEcCCcccHHHHH--HhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcCCCC----cHHHHhCCCceEEeCCC--
Confidence 45689999986543 566 6678777532 3469999999999999875432 34455555678888654
Q ss_pred CHHHHHHHHHHHh-CChhHHHHHHHHHHHHh
Q psy16503 136 TEETVLVALRTVL-GNPSYKKRAEKVARLFQ 165 (244)
Q Consensus 136 ~~~~l~~ai~~ll-~~~~y~~~a~~~s~~~~ 165 (244)
+.+++.++|..++ .++..+.++.+.+....
T Consensus 316 ~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~ 346 (355)
T cd03819 316 DAEALAQALDQILSLLPEGRAKMFAKARMCV 346 (355)
T ss_pred CHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 6889999996555 46666666666555443
No 91
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=97.84 E-value=0.00046 Score=62.51 Aligned_cols=93 Identities=17% Similarity=0.271 Sum_probs=67.8
Q ss_pred CCEEEe-ccCChhh---hhCCCCeeEEEe-c------CChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCC
Q psy16503 64 DKILLK-SWAPQRD---ILDHPNVKVFIS-H------GGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPY 132 (244)
Q Consensus 64 ~nv~~~-~~~pq~~---lL~h~~~~l~It-h------gG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~ 132 (244)
+|+.+. +|+|..+ ++ ..+|+++. + |-.+++.||+++|+|+|+.... .....+++.+.|..++
T Consensus 294 ~~~~~~~g~~~~~~~~~~l--~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~----~~~eiv~~~~~G~lv~- 366 (415)
T cd03816 294 KKVTIRTPWLSAEDYPKLL--ASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFK----CIDELVKHGENGLVFG- 366 (415)
T ss_pred CcEEEEcCcCCHHHHHHHH--HhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCC----CHHHHhcCCCCEEEEC-
Confidence 466655 5887554 46 67888874 1 1245799999999999996542 4456666777898873
Q ss_pred CCCCHHHHHHHHHHHhCC---hhHHHHHHHHHHHHhC
Q psy16503 133 DQITEETVLVALRTVLGN---PSYKKRAEKVARLFQD 166 (244)
Q Consensus 133 ~~~~~~~l~~ai~~ll~~---~~y~~~a~~~s~~~~~ 166 (244)
+.+++.++|.++++| +..++++.+.++....
T Consensus 367 ---d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~~ 400 (415)
T cd03816 367 ---DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEESE 400 (415)
T ss_pred ---CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhh
Confidence 689999999999998 7777777776666553
No 92
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=97.83 E-value=4e-05 Score=67.87 Aligned_cols=158 Identities=15% Similarity=0.234 Sum_probs=88.0
Q ss_pred HHHhcCCCceEEEEcCCCCCCC-CCCHHHHHHHHHHHhcC-CCeEEEEecCC---------CCCCCCCCEEEeccCChh-
Q psy16503 8 KFLDESVNGVIYFSMGSIIQGK-SFPSDKRKAFLRAFEQI-PQRVIWKWEGE---------NMSGKIDKILLKSWAPQR- 75 (244)
Q Consensus 8 ~~l~~~~~~vI~vs~Gs~~~~~-~~~~~~~~~i~~al~~~-~~~viw~~~~~---------~~~~~~~nv~~~~~~pq~- 75 (244)
.++...+++.+++++=...... ....+.+..+++++.+. +..++|.+.+. .+... +|+.+.+.++..
T Consensus 173 ~i~~~~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~~~~~i~~~l~~~-~~v~~~~~l~~~~ 251 (346)
T PF02350_consen 173 GILQDAPKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPRGSDIIIEKLKKY-DNVRLIEPLGYEE 251 (346)
T ss_dssp HHHHCTTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HHHHHHHHHHHTT--TTEEEE----HHH
T ss_pred HHHhccCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCchHHHHHHHHhccc-CCEEEECCCCHHH
Confidence 3333456789999993332211 11134455556666555 45899998842 12334 499999877654
Q ss_pred --hhhCCCCeeEEEecCChhhHH-HHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCChh
Q psy16503 76 --DILDHPNVKVFISHGGFLGTT-EALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPS 152 (244)
Q Consensus 76 --~lL~h~~~~l~IthgG~~s~~-Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~~ 152 (244)
.+| .+++++||..| ++. ||.+.|+|+|.+=-.++.+ .....|..+.+. .+.+++.++++++++++.
T Consensus 252 ~l~ll--~~a~~vvgdSs--GI~eEa~~lg~P~v~iR~~geRq----e~r~~~~nvlv~---~~~~~I~~ai~~~l~~~~ 320 (346)
T PF02350_consen 252 YLSLL--KNADLVVGDSS--GIQEEAPSLGKPVVNIRDSGERQ----EGRERGSNVLVG---TDPEAIIQAIEKALSDKD 320 (346)
T ss_dssp HHHHH--HHESEEEESSH--HHHHHGGGGT--EEECSSS-S-H----HHHHTTSEEEET---SSHHHHHHHHHHHHH-HH
T ss_pred HHHHH--hcceEEEEcCc--cHHHHHHHhCCeEEEecCCCCCH----HHHhhcceEEeC---CCHHHHHHHHHHHHhChH
Confidence 566 67999999998 566 9999999999992222221 223456666654 478999999999998755
Q ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHH
Q psy16503 153 YKKRAEKVARLFQDRPMPPLDTAIYWI 179 (244)
Q Consensus 153 y~~~a~~~s~~~~~~~~~~~~~a~~~i 179 (244)
+..++.....-+.+ ..+.+++++.+
T Consensus 321 ~~~~~~~~~npYgd--G~as~rI~~~L 345 (346)
T PF02350_consen 321 FYRKLKNRPNPYGD--GNASERIVEIL 345 (346)
T ss_dssp HHHHHHCS--TT-S--S-HHHHHHHHH
T ss_pred HHHhhccCCCCCCC--CcHHHHHHHhh
Confidence 55555543334444 34555555543
No 93
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=97.82 E-value=0.0006 Score=61.17 Aligned_cols=110 Identities=13% Similarity=0.164 Sum_probs=74.0
Q ss_pred CCCEEEeccCChh-hhhCCCCeeEEE--ec--CCh-hhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCC
Q psy16503 63 IDKILLKSWAPQR-DILDHPNVKVFI--SH--GGF-LGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQIT 136 (244)
Q Consensus 63 ~~nv~~~~~~pq~-~lL~h~~~~l~I--th--gG~-~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~ 136 (244)
.++|.+.+++++. ..+ ..++++| ++ .|. +.+.||+++|+|+|+.+...+.. ....|.|..+. + +
T Consensus 279 ~~~V~~~G~v~~~~~~~--~~adv~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~i-----~~~~~~g~lv~-~--~ 348 (397)
T TIGR03087 279 LPGVTVTGSVADVRPYL--AHAAVAVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEGI-----DALPGAELLVA-A--D 348 (397)
T ss_pred CCCeEEeeecCCHHHHH--HhCCEEEecccccCCcccHHHHHHHcCCCEEecCcccccc-----cccCCcceEeC-C--C
Confidence 4689999998865 455 6788877 32 343 57999999999999987533221 12346677764 2 6
Q ss_pred HHHHHHHHHHHhCChhHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q psy16503 137 EETVLVALRTVLGNPSYKKRAEKVARLFQDRPMPPLDTAIYWIEHVI 183 (244)
Q Consensus 137 ~~~l~~ai~~ll~~~~y~~~a~~~s~~~~~~~~~~~~~a~~~ie~~~ 183 (244)
.+++.++|.++++|+..++++.+.+.....+..+ .+..+.-++.++
T Consensus 349 ~~~la~ai~~ll~~~~~~~~~~~~ar~~v~~~fs-w~~~~~~~~~~l 394 (397)
T TIGR03087 349 PADFAAAILALLANPAEREELGQAARRRVLQHYH-WPRNLARLDALL 394 (397)
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHh
Confidence 8999999999999988777776666554322233 444444444444
No 94
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=97.82 E-value=0.00059 Score=60.39 Aligned_cols=138 Identities=16% Similarity=0.231 Sum_probs=84.9
Q ss_pred ceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCC--CeEEEEecCCC---------CCCCCCCEEEeccCCh--h---hhhC
Q psy16503 16 GVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIP--QRVIWKWEGEN---------MSGKIDKILLKSWAPQ--R---DILD 79 (244)
Q Consensus 16 ~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~--~~viw~~~~~~---------~~~~~~nv~~~~~~pq--~---~lL~ 79 (244)
+.+++..|..... +.+-...+++++.... .+++..-++.. ..+.+++|.+.+|.++ . +.+
T Consensus 180 ~~~i~~~Grl~~~---~~k~~~~l~~a~~~~~~~~~l~ivG~g~~~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~- 255 (359)
T PRK09922 180 PAVFLYVGRLKFE---GQKNVKELFDGLSQTTGEWQLHIIGDGSDFEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKI- 255 (359)
T ss_pred CcEEEEEEEEecc---cCcCHHHHHHHHHhhCCCeEEEEEeCCccHHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHH-
Confidence 5667777776321 1122445666665553 34444322321 1135678999999753 2 233
Q ss_pred CCCeeEEEec----CChhhHHHHHHhCCcEEecC-CCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCChhH-
Q psy16503 80 HPNVKVFISH----GGFLGTTEALYSGVPIIGIP-MFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSY- 153 (244)
Q Consensus 80 h~~~~l~Ith----gG~~s~~Eal~~gvP~i~vP-~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~~y- 153 (244)
..+++++.. |-..++.||+++|+|+|+.. ..+ ....+.+...|..++.. +.+++.++|.++++|++.
T Consensus 256 -~~~d~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~~~g----~~eiv~~~~~G~lv~~~--d~~~la~~i~~l~~~~~~~ 328 (359)
T PRK09922 256 -KNVSALLLTSKFEGFPMTLLEAMSYGIPCISSDCMSG----PRDIIKPGLNGELYTPG--NIDEFVGKLNKVISGEVKY 328 (359)
T ss_pred -hcCcEEEECCcccCcChHHHHHHHcCCCEEEeCCCCC----hHHHccCCCceEEECCC--CHHHHHHHHHHHHhCcccC
Confidence 457777753 43689999999999999985 432 22344455568887654 689999999999998863
Q ss_pred -HHHHHHHHHHH
Q psy16503 154 -KKRAEKVARLF 164 (244)
Q Consensus 154 -~~~a~~~s~~~ 164 (244)
...+.+..+.+
T Consensus 329 ~~~~~~~~~~~~ 340 (359)
T PRK09922 329 QHDAIPNSIERF 340 (359)
T ss_pred CHHHHHHHHHHh
Confidence 33334433333
No 95
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=97.66 E-value=0.0038 Score=58.05 Aligned_cols=158 Identities=15% Similarity=0.150 Sum_probs=92.7
Q ss_pred ceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCC----C------CCCCCCEEEeccCChhhhhCCCCeeE
Q psy16503 16 GVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGEN----M------SGKIDKILLKSWAPQRDILDHPNVKV 85 (244)
Q Consensus 16 ~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~----~------~~~~~nv~~~~~~pq~~lL~h~~~~l 85 (244)
+..++..|..... .-...+++++....++.|.--+..+|... + .+..++|.+.++.+..+++ ..+++
T Consensus 319 ~~~il~vGrl~~~-Kg~~~li~A~~~l~~~~p~~~l~i~G~G~~~~~l~~~i~~~~l~~~V~f~G~~~~~~~~--~~adv 395 (500)
T TIGR02918 319 PFSIITASRLAKE-KHIDWLVKAVVKAKKSVPELTFDIYGEGGEKQKLQKIINENQAQDYIHLKGHRNLSEVY--KDYEL 395 (500)
T ss_pred CeEEEEEeccccc-cCHHHHHHHHHHHHhhCCCeEEEEEECchhHHHHHHHHHHcCCCCeEEEcCCCCHHHHH--HhCCE
Confidence 4567777877432 22233334333333344432233344311 1 1235678999988877888 56777
Q ss_pred EEec----CChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCC--CCC----HHHHHHHHHHHhCChhHHH
Q psy16503 86 FISH----GGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYD--QIT----EETVLVALRTVLGNPSYKK 155 (244)
Q Consensus 86 ~Ith----gG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~--~~~----~~~l~~ai~~ll~~~~y~~ 155 (244)
++.- |-..++.||+++|+|+|+....+ .+...+++...|..++.. .-+ .+.+.++|.+++++ ..++
T Consensus 396 ~v~pS~~Egfgl~~lEAma~G~PVI~~dv~~---G~~eiI~~g~nG~lv~~~~~~~d~~~~~~~la~~I~~ll~~-~~~~ 471 (500)
T TIGR02918 396 YLSASTSEGFGLTLMEAVGSGLGMIGFDVNY---GNPTFIEDNKNGYLIPIDEEEDDEDQIITALAEKIVEYFNS-NDID 471 (500)
T ss_pred EEEcCccccccHHHHHHHHhCCCEEEecCCC---CCHHHccCCCCEEEEeCCccccchhHHHHHHHHHHHHHhCh-HHHH
Confidence 7752 33579999999999999976421 133445555568877632 112 67899999999954 4455
Q ss_pred HHHHHHHHHhCCCCChHHHHHHHHHH
Q psy16503 156 RAEKVARLFQDRPMPPLDTAIYWIEH 181 (244)
Q Consensus 156 ~a~~~s~~~~~~~~~~~~~a~~~ie~ 181 (244)
++.+.+..... ..+....+..|.+.
T Consensus 472 ~~~~~a~~~a~-~fs~~~v~~~w~~l 496 (500)
T TIGR02918 472 AFHEYSYQIAE-GFLTANIIEKWKKL 496 (500)
T ss_pred HHHHHHHHHHH-hcCHHHHHHHHHHH
Confidence 55555554433 24545555556553
No 96
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.60 E-value=0.0012 Score=57.65 Aligned_cols=130 Identities=15% Similarity=0.219 Sum_probs=79.0
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHhcCC--CeEEEEecCC-C----------CCCCCCCEEEeccCChhh---hhCCC
Q psy16503 18 IYFSMGSIIQGKSFPSDKRKAFLRAFEQIP--QRVIWKWEGE-N----------MSGKIDKILLKSWAPQRD---ILDHP 81 (244)
Q Consensus 18 I~vs~Gs~~~~~~~~~~~~~~i~~al~~~~--~~viw~~~~~-~----------~~~~~~nv~~~~~~pq~~---lL~h~ 81 (244)
.++..|+... .+-...+++++..++ .++++ +|+. . .....++|.+.+++|+.+ .+ .
T Consensus 195 ~i~~~G~~~~-----~Kg~~~li~a~~~l~~~~~l~i-vG~~~~~~~~~~~~~~~~~~~~~V~~~g~~~~~~~~~~~--~ 266 (363)
T cd04955 195 YYLLVGRIVP-----ENNIDDLIEAFSKSNSGKKLVI-VGNADHNTPYGKLLKEKAAADPRIIFVGPIYDQELLELL--R 266 (363)
T ss_pred EEEEEecccc-----cCCHHHHHHHHHhhccCceEEE-EcCCCCcchHHHHHHHHhCCCCcEEEccccChHHHHHHH--H
Confidence 4556788743 223445666666554 35444 3431 1 123467899999998764 44 4
Q ss_pred CeeEEEecCC-----hhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCChhHHHH
Q psy16503 82 NVKVFISHGG-----FLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSYKKR 156 (244)
Q Consensus 82 ~~~l~IthgG-----~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~~y~~~ 156 (244)
.+++++.+.- .+++.||+++|+|+|+....+. ...+.. .|...+.. +.+.++|.++++|++.+.+
T Consensus 267 ~ad~~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~----~e~~~~--~g~~~~~~----~~l~~~i~~l~~~~~~~~~ 336 (363)
T cd04955 267 YAALFYLHGHSVGGTNPSLLEAMAYGCPVLASDNPFN----REVLGD--KAIYFKVG----DDLASLLEELEADPEEVSA 336 (363)
T ss_pred hCCEEEeCCccCCCCChHHHHHHHcCCCEEEecCCcc----ceeecC--CeeEecCc----hHHHHHHHHHHhCHHHHHH
Confidence 5667666432 3679999999999999754321 111122 34444432 2299999999999876666
Q ss_pred HHHHHHHHh
Q psy16503 157 AEKVARLFQ 165 (244)
Q Consensus 157 a~~~s~~~~ 165 (244)
+.+.+....
T Consensus 337 ~~~~~~~~~ 345 (363)
T cd04955 337 MAKAARERI 345 (363)
T ss_pred HHHHHHHHH
Confidence 666555443
No 97
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=97.53 E-value=0.0023 Score=57.08 Aligned_cols=128 Identities=19% Similarity=0.258 Sum_probs=81.2
Q ss_pred CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCCC---------C---CCCCCEEEeccCChh---hhhC
Q psy16503 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENM---------S---GKIDKILLKSWAPQR---DILD 79 (244)
Q Consensus 15 ~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~~---------~---~~~~nv~~~~~~pq~---~lL~ 79 (244)
++.++|++-........+.+.+..+++++......+++.++.... . ...+|+.+.+.++.. .++
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p~~~~i~~~i~~~~~~~~~v~l~~~l~~~~~l~Ll- 279 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADAGSRIINEAIEEYVNEHPNFRLFKSLGQERYLSLL- 279 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCCCchHHHHHHHHHhcCCCCEEEECCCChHHHHHHH-
Confidence 478888885432122344677899999998776555555432110 0 014689998876644 466
Q ss_pred CCCeeEEEecCChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceee-cCCCCCCHHHHHHHHHHHhCChhHHHH
Q psy16503 80 HPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVT-LPYDQITEETVLVALRTVLGNPSYKKR 156 (244)
Q Consensus 80 h~~~~l~IthgG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~-l~~~~~~~~~l~~ai~~ll~~~~y~~~ 156 (244)
..++++||..+.+. .||.+.|+|+|.+- +-+ ...+.|..+. +. .+.++|.+++++++ +++++++
T Consensus 280 -~~a~~vitdSSggi-~EA~~lg~Pvv~l~---~R~----e~~~~g~nvl~vg---~~~~~I~~a~~~~~-~~~~~~~ 344 (365)
T TIGR03568 280 -KNADAVIGNSSSGI-IEAPSFGVPTINIG---TRQ----KGRLRADSVIDVD---PDKEEIVKAIEKLL-DPAFKKS 344 (365)
T ss_pred -HhCCEEEEcChhHH-HhhhhcCCCEEeec---CCc----hhhhhcCeEEEeC---CCHHHHHHHHHHHh-ChHHHHH
Confidence 67999999875544 99999999999773 211 1123344433 43 36899999999965 5444443
No 98
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.52 E-value=0.0029 Score=61.01 Aligned_cols=139 Identities=23% Similarity=0.221 Sum_probs=86.1
Q ss_pred ceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCC----C------CCCCCCEEEeccCChh-hhhCCCCee
Q psy16503 16 GVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGEN----M------SGKIDKILLKSWAPQR-DILDHPNVK 84 (244)
Q Consensus 16 ~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~----~------~~~~~nv~~~~~~pq~-~lL~h~~~~ 84 (244)
..++...|.....+ -...+++.+.....+.+.--++.+|+.. + .+..++|.+.+|.++. .++ ..++
T Consensus 517 ~~vIg~VGRL~~~K-G~~~LI~A~a~l~~~~p~~~LvIvG~G~~~~~L~~l~~~lgL~~~V~flG~~~dv~~ll--~aaD 593 (694)
T PRK15179 517 RFTVGTVMRVDDNK-RPFLWVEAAQRFAASHPKVRFIMVGGGPLLESVREFAQRLGMGERILFTGLSRRVGYWL--TQFN 593 (694)
T ss_pred CeEEEEEEeCCccC-CHHHHHHHHHHHHHHCcCeEEEEEccCcchHHHHHHHHHcCCCCcEEEcCCcchHHHHH--HhcC
Confidence 45666677764322 2234444444444444542344455421 1 1345789999997754 455 6778
Q ss_pred EEEe---cCC-hhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHh----CChhHHHH
Q psy16503 85 VFIS---HGG-FLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVL----GNPSYKKR 156 (244)
Q Consensus 85 l~It---hgG-~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll----~~~~y~~~ 156 (244)
+|+. +.| .+++.||+++|+|+|+...-+ ....+.+...|..++.++.+.+++.+++.+++ .++..+++
T Consensus 594 v~VlpS~~Egfp~vlLEAMA~G~PVVat~~gG----~~EiV~dg~~GlLv~~~d~~~~~La~aL~~ll~~l~~~~~l~~~ 669 (694)
T PRK15179 594 AFLLLSRFEGLPNVLIEAQFSGVPVVTTLAGG----AGEAVQEGVTGLTLPADTVTAPDVAEALARIHDMCAADPGIARK 669 (694)
T ss_pred EEEeccccccchHHHHHHHHcCCeEEEECCCC----hHHHccCCCCEEEeCCCCCChHHHHHHHHHHHhChhccHHHHHH
Confidence 8775 444 589999999999999986532 34455555679999877766666666666655 45666666
Q ss_pred HHHHH
Q psy16503 157 AEKVA 161 (244)
Q Consensus 157 a~~~s 161 (244)
+++..
T Consensus 670 ar~~a 674 (694)
T PRK15179 670 AADWA 674 (694)
T ss_pred HHHHH
Confidence 65544
No 99
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=97.46 E-value=0.0048 Score=61.51 Aligned_cols=166 Identities=12% Similarity=0.142 Sum_probs=100.1
Q ss_pred HHHHHHhcCCCceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCC-----CeEEEEecC-CC---C----------------
Q psy16503 5 DIKKFLDESVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIP-----QRVIWKWEG-EN---M---------------- 59 (244)
Q Consensus 5 ~l~~~l~~~~~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~-----~~viw~~~~-~~---~---------------- 59 (244)
++..|+...+ +.++++.|.... .+-...+++|+..++ ..+.+..++ +. +
T Consensus 469 ~l~r~~~~pd-kpvIL~VGRL~p-----~KGi~~LIeAf~~L~~l~~~~nL~LIiG~gdd~d~l~~~~~~~l~~L~~li~ 542 (1050)
T TIGR02468 469 EIMRFFTNPR-KPMILALARPDP-----KKNITTLVKAFGECRPLRELANLTLIMGNRDDIDEMSSGSSSVLTSVLKLID 542 (1050)
T ss_pred HHHhhcccCC-CcEEEEEcCCcc-----ccCHHHHHHHHHHhHhhccCCCEEEEEecCchhhhhhccchHHHHHHHHHHH
Confidence 4555665433 456677788743 333555666665442 133333443 11 1
Q ss_pred -CCCCCCEEEeccCChhh---hhCC--CCeeEEEec----CChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceee
Q psy16503 60 -SGKIDKILLKSWAPQRD---ILDH--PNVKVFISH----GGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVT 129 (244)
Q Consensus 60 -~~~~~nv~~~~~~pq~~---lL~h--~~~~l~Ith----gG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~ 129 (244)
.+..++|.+.+++|+.+ ++.. ...++|+.- |=..++.||+++|+|+|+-...+ ....+.....|+.
T Consensus 543 ~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvGG----~~EII~~g~nGlL 618 (1050)
T TIGR02468 543 KYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNGG----PVDIHRVLDNGLL 618 (1050)
T ss_pred HhCCCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCCC----cHHHhccCCcEEE
Confidence 12356788888887664 3421 123577764 33479999999999999986543 2233334456888
Q ss_pred cCCCCCCHHHHHHHHHHHhCChhHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q psy16503 130 LPYDQITEETVLVALRTVLGNPSYKKRAEKVARLFQDRPMPPLDTAIYWIEHVI 183 (244)
Q Consensus 130 l~~~~~~~~~l~~ai~~ll~~~~y~~~a~~~s~~~~~~~~~~~~~a~~~ie~~~ 183 (244)
+++. +.+.|.++|.++++|+..++++.+.+.....+ ++-...+..+.+.+.
T Consensus 619 VdP~--D~eaLA~AL~~LL~Dpelr~~m~~~gr~~v~~-FSWe~ia~~yl~~i~ 669 (1050)
T TIGR02468 619 VDPH--DQQAIADALLKLVADKQLWAECRQNGLKNIHL-FSWPEHCKTYLSRIA 669 (1050)
T ss_pred ECCC--CHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHH
Confidence 8765 58899999999999988777777665544332 444444444444443
No 100
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=97.44 E-value=0.008 Score=53.92 Aligned_cols=126 Identities=14% Similarity=0.178 Sum_probs=73.9
Q ss_pred CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCC-eEEEEecCCC---------CCCCCCCEEEeccCChh---hhhCCC
Q psy16503 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQ-RVIWKWEGEN---------MSGKIDKILLKSWAPQR---DILDHP 81 (244)
Q Consensus 15 ~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~-~viw~~~~~~---------~~~~~~nv~~~~~~pq~---~lL~h~ 81 (244)
++.+++..|.....+. ...+++.+....+..+. ++++.-++.. ..+..+++.+.+|+|+. +++ +
T Consensus 192 ~~~~i~~~grl~~~Kg-~~~li~a~~~l~~~~~~~~l~i~G~g~~~~~l~~~~~~~~l~~~v~~~G~~~~~~~~~~l--~ 268 (398)
T cd03796 192 DKITIVVISRLVYRKG-IDLLVGIIPEICKKHPNVRFIIGGDGPKRILLEEMREKYNLQDRVELLGAVPHERVRDVL--V 268 (398)
T ss_pred CceEEEEEeccchhcC-HHHHHHHHHHHHhhCCCEEEEEEeCCchHHHHHHHHHHhCCCCeEEEeCCCCHHHHHHHH--H
Confidence 4567778887743211 22222222221223343 4444332211 11245679999999865 356 6
Q ss_pred CeeEEEec---CC-hhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCCh
Q psy16503 82 NVKVFISH---GG-FLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNP 151 (244)
Q Consensus 82 ~~~l~Ith---gG-~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~ 151 (244)
.+|+++.- -| ..++.||+++|+|+|+-+..+- ...+. .|.+..... +.+++.+++.++++++
T Consensus 269 ~ad~~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg~----~e~i~-~~~~~~~~~---~~~~l~~~l~~~l~~~ 334 (398)
T cd03796 269 QGHIFLNTSLTEAFCIAIVEAASCGLLVVSTRVGGI----PEVLP-PDMILLAEP---DVESIVRKLEEAISIL 334 (398)
T ss_pred hCCEEEeCChhhccCHHHHHHHHcCCCEEECCCCCc----hhhee-CCceeecCC---CHHHHHHHHHHHHhCh
Confidence 78888753 23 2599999999999999876431 22332 344444332 6799999999999764
No 101
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=97.27 E-value=0.0059 Score=52.62 Aligned_cols=122 Identities=16% Similarity=0.086 Sum_probs=77.9
Q ss_pred CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCC-------CCC---CCCCEEEeccCChhh---hhCCC
Q psy16503 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGEN-------MSG---KIDKILLKSWAPQRD---ILDHP 81 (244)
Q Consensus 15 ~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~-------~~~---~~~nv~~~~~~pq~~---lL~h~ 81 (244)
++..++..|..... +-...+++++++.+.++++.-++.. ... ..+++.+.+++++.+ ++ .
T Consensus 170 ~~~~i~~~Gr~~~~-----Kg~~~li~~~~~~~~~l~i~G~~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~~~~~~~--~ 242 (335)
T cd03802 170 KGDYLLFLGRISPE-----KGPHLAIRAARRAGIPLKLAGPVSDPDYFYREIAPELLDGPDIEYLGEVGGAEKAELL--G 242 (335)
T ss_pred CCCEEEEEEeeccc-----cCHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHhcccCCcEEEeCCCCHHHHHHHH--H
Confidence 34556667777432 2244566777776666665433321 011 257899999998754 46 5
Q ss_pred CeeEEEe----cCC-hhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCCh
Q psy16503 82 NVKVFIS----HGG-FLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNP 151 (244)
Q Consensus 82 ~~~l~It----hgG-~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~ 151 (244)
.+++++. +-| ..++.||+++|+|+|+....+ ....+.+...|...+. .+++.++|.++...+
T Consensus 243 ~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~~~----~~e~i~~~~~g~l~~~----~~~l~~~l~~l~~~~ 309 (335)
T cd03802 243 NARALLFPILWEEPFGLVMIEAMACGTPVIAFRRGA----VPEVVEDGVTGFLVDS----VEELAAAVARADRLD 309 (335)
T ss_pred hCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCCCC----chhheeCCCcEEEeCC----HHHHHHHHHHHhccH
Confidence 6677663 223 468999999999999886532 2233333346887753 899999999987543
No 102
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=97.26 E-value=0.0034 Score=55.19 Aligned_cols=98 Identities=14% Similarity=0.266 Sum_probs=69.4
Q ss_pred CCCCCEEEeccCChhhhhCC--CCeeEEEec-------CC------hhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcC
Q psy16503 61 GKIDKILLKSWAPQRDILDH--PNVKVFISH-------GG------FLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAG 125 (244)
Q Consensus 61 ~~~~nv~~~~~~pq~~lL~h--~~~~l~Ith-------gG------~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G 125 (244)
...+||.+.+|+|..++..+ ...-++... +. .+-+.|++++|+|+|+.+ ....+..+++.+
T Consensus 204 ~~~~~V~f~G~~~~eel~~~l~~~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~----~~~~~~~V~~~~ 279 (333)
T PRK09814 204 ENSANISYKGWFDPEELPNELSKGFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWS----KAAIADFIVENG 279 (333)
T ss_pred ccCCCeEEecCCCHHHHHHHHhcCcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECC----CccHHHHHHhCC
Confidence 45679999999998765321 111122111 11 123778899999999854 456788899999
Q ss_pred ceeecCCCCCCHHHHHHHHHHHhCC--hhHHHHHHHHHHHHhC
Q psy16503 126 FGVTLPYDQITEETVLVALRTVLGN--PSYKKRAEKVARLFQD 166 (244)
Q Consensus 126 ~g~~l~~~~~~~~~l~~ai~~ll~~--~~y~~~a~~~s~~~~~ 166 (244)
+|+.++ +.+++.+++.++..+ ..++++++++++.++.
T Consensus 280 ~G~~v~----~~~el~~~l~~~~~~~~~~m~~n~~~~~~~~~~ 318 (333)
T PRK09814 280 LGFVVD----SLEELPEIIDNITEEEYQEMVENVKKISKLLRN 318 (333)
T ss_pred ceEEeC----CHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhc
Confidence 999997 567899999886432 2467888999988886
No 103
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=97.19 E-value=0.012 Score=51.79 Aligned_cols=161 Identities=17% Similarity=0.120 Sum_probs=93.2
Q ss_pred HHHHHhcCCCceEEEEcCCCCCCC-CCCHHHHHHHHHHHhcCCCeEEEEecCCCCCCC--CCCEEEe-ccCChhhhhCCC
Q psy16503 6 IKKFLDESVNGVIYFSMGSIIQGK-SFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGK--IDKILLK-SWAPQRDILDHP 81 (244)
Q Consensus 6 l~~~l~~~~~~vI~vs~Gs~~~~~-~~~~~~~~~i~~al~~~~~~viw~~~~~~~~~~--~~nv~~~-~~~pq~~lL~h~ 81 (244)
+.+-+...+++.|++=+.+....- ......+..+++.+++.+..++......+.... .-++.+. .-++-.++| .
T Consensus 170 vl~~lg~~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~vV~ipr~~~~~~~~~~~~~~i~~~~vd~~~Ll--~ 247 (335)
T PF04007_consen 170 VLKELGLDDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRNVVIIPRYEDQRELFEKYGVIIPPEPVDGLDLL--Y 247 (335)
T ss_pred HHHHcCCCCCCEEEEEeccccCeeecCccchHHHHHHHHHhhCceEEEecCCcchhhHHhccCccccCCCCCHHHHH--H
Confidence 333444334688888776643211 123466778888888877654443322221111 1123332 234555888 6
Q ss_pred CeeEEEecCChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCChhHHHHHHHHH
Q psy16503 82 NVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSYKKRAEKVA 161 (244)
Q Consensus 82 ~~~l~IthgG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~~y~~~a~~~s 161 (244)
.++++|+-|| ....||...|+|.|-+ +.++-...-+.+.+.|+-.... +.+++.+.+.+.+ ..+++....
T Consensus 248 ~a~l~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~~Gll~~~~----~~~ei~~~v~~~~---~~~~~~~~~- 317 (335)
T PF04007_consen 248 YADLVIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIEKGLLYHST----DPDEIVEYVRKNL---GKRKKIREK- 317 (335)
T ss_pred hcCEEEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHHCCCeEecC----CHHHHHHHHHHhh---hcccchhhh-
Confidence 7999999988 5789999999999986 2233333446678888733332 5677777555544 333333321
Q ss_pred HHHhCCCCChHHHHHHHHHHHH
Q psy16503 162 RLFQDRPMPPLDTAIYWIEHVI 183 (244)
Q Consensus 162 ~~~~~~~~~~~~~a~~~ie~~~ 183 (244)
.. .++.+..++-||.++
T Consensus 318 ---~~--~d~~~~i~~~i~~~~ 334 (335)
T PF04007_consen 318 ---KS--EDPTDLIIEEIEEYI 334 (335)
T ss_pred ---hc--cCHHHHHHHHHHHhh
Confidence 11 466777777777553
No 104
>PHA01633 putative glycosyl transferase group 1
Probab=97.14 E-value=0.0098 Score=52.46 Aligned_cols=86 Identities=13% Similarity=0.077 Sum_probs=58.0
Q ss_pred CCCCCEEEec---cCChh---hhhCCCCeeEEEec----CChhhHHHHHHhCCcEEecCC------Ccch------hhHH
Q psy16503 61 GKIDKILLKS---WAPQR---DILDHPNVKVFISH----GGFLGTTEALYSGVPIIGIPM------FGDQ------KANI 118 (244)
Q Consensus 61 ~~~~nv~~~~---~~pq~---~lL~h~~~~l~Ith----gG~~s~~Eal~~gvP~i~vP~------~~dQ------~~na 118 (244)
..++++.+.. +.+.. +++ ..+|+|+.- |-..++.||+++|+|+|+--. .+++ ..++
T Consensus 198 ~l~~~V~f~g~~G~~~~~dl~~~y--~~aDifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v 275 (335)
T PHA01633 198 EVPANVHFVAEFGHNSREYIFAFY--GAMDFTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKV 275 (335)
T ss_pred CCCCcEEEEecCCCCCHHHHHHHH--HhCCEEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCH
Confidence 3567888874 44543 456 678888863 335689999999999998622 2332 3334
Q ss_pred HHHH--HcCceeecCCCCCCHHHHHHHHHHHhCC
Q psy16503 119 RVVE--KAGFGVTLPYDQITEETVLVALRTVLGN 150 (244)
Q Consensus 119 ~~~~--~~G~g~~l~~~~~~~~~l~~ai~~ll~~ 150 (244)
.... +.|.|..++ ..+++++.++|.+++..
T Consensus 276 ~~~~~~~~g~g~~~~--~~d~~~la~ai~~~~~~ 307 (335)
T PHA01633 276 EEYYDKEHGQKWKIH--KFQIEDMANAIILAFEL 307 (335)
T ss_pred HHhcCcccCceeeec--CCCHHHHHHHHHHHHhc
Confidence 3333 356777765 45799999999999543
No 105
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.027 Score=52.27 Aligned_cols=127 Identities=18% Similarity=0.315 Sum_probs=89.9
Q ss_pred cCCCceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecC--CC-----------CCC-CCCCEEEeccCChhhh
Q psy16503 12 ESVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEG--EN-----------MSG-KIDKILLKSWAPQRDI 77 (244)
Q Consensus 12 ~~~~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~--~~-----------~~~-~~~nv~~~~~~pq~~l 77 (244)
-.++.+||+||+...+ ...+.+....+.++..|..++|..++ +. ..+ .+..+++.+-.|..+.
T Consensus 426 lp~~avVf~c~~n~~K---~~pev~~~wmqIL~~vP~Svl~L~~~~~~~~~~~~l~~la~~~Gv~~eRL~f~p~~~~~~h 502 (620)
T COG3914 426 LPEDAVVFCCFNNYFK---ITPEVFALWMQILSAVPNSVLLLKAGGDDAEINARLRDLAEREGVDSERLRFLPPAPNEDH 502 (620)
T ss_pred CCCCeEEEEecCCccc---CCHHHHHHHHHHHHhCCCcEEEEecCCCcHHHHHHHHHHHHHcCCChhheeecCCCCCHHH
Confidence 3457899999999865 67899999999999999999998876 21 011 3557788777765543
Q ss_pred h-CCCCeeEEEe---cCChhhHHHHHHhCCcEEecCCCcchhh--HHHHH-HHcCceeecCCCCCCHHHHHHHHH
Q psy16503 78 L-DHPNVKVFIS---HGGFLGTTEALYSGVPIIGIPMFGDQKA--NIRVV-EKAGFGVTLPYDQITEETVLVALR 145 (244)
Q Consensus 78 L-~h~~~~l~It---hgG~~s~~Eal~~gvP~i~vP~~~dQ~~--na~~~-~~~G~g~~l~~~~~~~~~l~~ai~ 145 (244)
+ .+.-+|+|+. -||..|..|++..||||+.. .|+|+. |+..+ ...|+-..+-.+ ..+-+..++.
T Consensus 503 ~a~~~iADlvLDTyPY~g~TTa~daLwm~vPVlT~--~G~~FasR~~~si~~~agi~e~vA~s--~~dYV~~av~ 573 (620)
T COG3914 503 RARYGIADLVLDTYPYGGHTTASDALWMGVPVLTR--VGEQFASRNGASIATNAGIPELVADS--RADYVEKAVA 573 (620)
T ss_pred HHhhchhheeeecccCCCccchHHHHHhcCceeee--ccHHHHHhhhHHHHHhcCCchhhcCC--HHHHHHHHHH
Confidence 3 2467889887 59999999999999999998 677775 33333 344665554322 2344555553
No 106
>PHA01630 putative group 1 glycosyl transferase
Probab=97.08 E-value=0.034 Score=48.99 Aligned_cols=105 Identities=16% Similarity=0.181 Sum_probs=61.4
Q ss_pred CChhh---hhCCCCeeEEEe--c--CChhhHHHHHHhCCcEEecCCCc--chhhH---HHHHH-----------HcCcee
Q psy16503 72 APQRD---ILDHPNVKVFIS--H--GGFLGTTEALYSGVPIIGIPMFG--DQKAN---IRVVE-----------KAGFGV 128 (244)
Q Consensus 72 ~pq~~---lL~h~~~~l~It--h--gG~~s~~Eal~~gvP~i~vP~~~--dQ~~n---a~~~~-----------~~G~g~ 128 (244)
+|..+ ++ ..+|+|+. + |...++.||+++|+|+|+....+ |...+ ...+. -.++|.
T Consensus 198 v~~~~l~~~y--~~aDv~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg~~E~i~~~~ng~lv~~~~~~~~~~~~~~~~G~ 275 (331)
T PHA01630 198 LPDDDIYSLF--AGCDILFYPVRGGAFEIPVIEALALGLDVVVTEKGAWSEWVLSNLDVYWIKSGRKPKLWYTNPIHVGY 275 (331)
T ss_pred CCHHHHHHHH--HhCCEEEECCccccCChHHHHHHHcCCCEEEeCCCCchhhccCCCceEEeeecccccccccCCccccc
Confidence 66543 46 67888874 2 32578999999999999976432 32211 11010 023566
Q ss_pred ecCCCCCCHHHHHHHHHHHhCC---hhHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q psy16503 129 TLPYDQITEETVLVALRTVLGN---PSYKKRAEKVARLFQDRPMPPLDTAIYWIEHVI 183 (244)
Q Consensus 129 ~l~~~~~~~~~l~~ai~~ll~~---~~y~~~a~~~s~~~~~~~~~~~~~a~~~ie~~~ 183 (244)
.++. +.+++.+++.+++.| +.+++.+.+.++...++ .+ .+..++-.+.++
T Consensus 276 ~v~~---~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~~~-fs-~~~ia~k~~~l~ 328 (331)
T PHA01630 276 FLDP---DIEDAYQKLLEALANWTPEKKKENLEGRAILYREN-YS-YNAIAKMWEKIL 328 (331)
T ss_pred ccCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh-CC-HHHHHHHHHHHH
Confidence 5544 467788888888876 45666666655555432 33 444444444443
No 107
>PLN02275 transferase, transferring glycosyl groups
Probab=97.07 E-value=0.007 Score=53.93 Aligned_cols=75 Identities=15% Similarity=0.280 Sum_probs=54.8
Q ss_pred CCEEEec-cCChhhh---hCCCCeeEEEe-c-----CC-hhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCC
Q psy16503 64 DKILLKS-WAPQRDI---LDHPNVKVFIS-H-----GG-FLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPY 132 (244)
Q Consensus 64 ~nv~~~~-~~pq~~l---L~h~~~~l~It-h-----gG-~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~ 132 (244)
+|+.+.. |+|..++ + ..+|+++. + -| .+++.||+++|+|+|+...- .+.+.+.+.+.|..++
T Consensus 286 ~~v~~~~~~~~~~~~~~~l--~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~g----g~~eiv~~g~~G~lv~- 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLL--GSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYS----CIGELVKDGKNGLLFS- 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHH--HhCCEEEEeccccccccccHHHHHHHHCCCCEEEecCC----ChHHHccCCCCeEEEC-
Confidence 4577665 6887654 6 78899884 1 12 46899999999999997542 2556666677899885
Q ss_pred CCCCHHHHHHHHHHHh
Q psy16503 133 DQITEETVLVALRTVL 148 (244)
Q Consensus 133 ~~~~~~~l~~ai~~ll 148 (244)
+.+++.++|.+++
T Consensus 359 ---~~~~la~~i~~l~ 371 (371)
T PLN02275 359 ---SSSELADQLLELL 371 (371)
T ss_pred ---CHHHHHHHHHHhC
Confidence 4788999998874
No 108
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=96.95 E-value=0.0074 Score=42.42 Aligned_cols=82 Identities=21% Similarity=0.164 Sum_probs=56.4
Q ss_pred cCChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcC-ceeecCCCCCCHHHHHHHHHHHhCChhHHHHHHHHHHHHhCC
Q psy16503 89 HGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAG-FGVTLPYDQITEETVLVALRTVLGNPSYKKRAEKVARLFQDR 167 (244)
Q Consensus 89 hgG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G-~g~~l~~~~~~~~~l~~ai~~ll~~~~y~~~a~~~s~~~~~~ 167 (244)
+|-..-+.|++++|+|+|.-+- ..... +-..| -++..+ +.+++.+++..+++|+..++++.+-+...-.+
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~-~~~~~~~~~~~~----~~~el~~~i~~ll~~~~~~~~ia~~a~~~v~~ 79 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLRE-IFEDGEHIITYN----DPEELAEKIEYLLENPEERRRIAKNARERVLK 79 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHH-HcCCCCeEEEEC----CHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 4556789999999999999854 22222 23334 445543 78999999999999998887777776555443
Q ss_pred CCChHHHHHHHH
Q psy16503 168 PMPPLDTAIYWI 179 (244)
Q Consensus 168 ~~~~~~~a~~~i 179 (244)
..+-..++..++
T Consensus 80 ~~t~~~~~~~il 91 (92)
T PF13524_consen 80 RHTWEHRAEQIL 91 (92)
T ss_pred hCCHHHHHHHHH
Confidence 355555555443
No 109
>KOG4626|consensus
Probab=96.94 E-value=0.0092 Score=55.83 Aligned_cols=139 Identities=14% Similarity=0.324 Sum_probs=93.2
Q ss_pred CCceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCC------------CCCCCCCCEEEeccCChhh-----
Q psy16503 14 VNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGE------------NMSGKIDKILLKSWAPQRD----- 76 (244)
Q Consensus 14 ~~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~------------~~~~~~~nv~~~~~~pq~~----- 76 (244)
++.+||.+|--... +.++.++...+.|++.|..++|..... .+.-.|+.|.+.+-.+-.+
T Consensus 757 ~d~vvf~~FNqLyK---idP~~l~~W~~ILk~VPnS~LwllrfPa~ge~rf~ty~~~~Gl~p~riifs~va~k~eHvrr~ 833 (966)
T KOG4626|consen 757 EDAVVFCNFNQLYK---IDPSTLQMWANILKRVPNSVLWLLRFPAVGEQRFRTYAEQLGLEPDRIIFSPVAAKEEHVRRG 833 (966)
T ss_pred CCeEEEeechhhhc---CCHHHHHHHHHHHHhCCcceeEEEeccccchHHHHHHHHHhCCCccceeeccccchHHHHHhh
Confidence 35688888877755 788999999999999999999986531 1222466777776554332
Q ss_pred hhCCCCeeEEEecCChhhHHHHHHhCCcEEecCCCc-chhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCChhHHH
Q psy16503 77 ILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFG-DQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSYKK 155 (244)
Q Consensus 77 lL~h~~~~l~IthgG~~s~~Eal~~gvP~i~vP~~~-dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~~y~~ 155 (244)
.|++-..|-+.+. |..|-+|.++.||||+.+|.-. -...-+..+...|+|..+-+ +.++-.+.--++-.|..|.+
T Consensus 834 ~LaDv~LDTplcn-GhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~~Gl~hliak---~~eEY~~iaV~Latd~~~L~ 909 (966)
T KOG4626|consen 834 QLADVCLDTPLCN-GHTTGMDVLWAGVPMVTMPGETLASRVAASLLTALGLGHLIAK---NREEYVQIAVRLATDKEYLK 909 (966)
T ss_pred hhhhhcccCcCcC-CcccchhhhccCCceeecccHHHHHHHHHHHHHHcccHHHHhh---hHHHHHHHHHHhhcCHHHHH
Confidence 3333334455565 5678899999999999999843 23344556677899987754 34444444444545766665
Q ss_pred HHHH
Q psy16503 156 RAEK 159 (244)
Q Consensus 156 ~a~~ 159 (244)
+++.
T Consensus 910 ~lr~ 913 (966)
T KOG4626|consen 910 KLRA 913 (966)
T ss_pred HHHH
Confidence 5554
No 110
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=96.93 E-value=0.017 Score=53.06 Aligned_cols=129 Identities=16% Similarity=0.119 Sum_probs=73.0
Q ss_pred CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCC--------C-CCCCCCEEEeccCChh---hhhCCCC
Q psy16503 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGEN--------M-SGKIDKILLKSWAPQR---DILDHPN 82 (244)
Q Consensus 15 ~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~--------~-~~~~~nv~~~~~~pq~---~lL~h~~ 82 (244)
+..+++..|.....+ ..+.+-..++.+.+.+.++++.-+++. + ...+.|+.+..-.++. .++ ..
T Consensus 295 ~~~~i~~vGrl~~~K--g~~~li~a~~~l~~~~~~lvi~G~g~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~--~~ 370 (476)
T cd03791 295 DAPLFGFVGRLTEQK--GIDLLLEALPELLELGGQLVILGSGDPEYEEALRELAARYPGRVAVLIGYDEALAHLIY--AG 370 (476)
T ss_pred CCCEEEEEeeccccc--cHHHHHHHHHHHHHcCcEEEEEecCCHHHHHHHHHHHHhCCCcEEEEEeCCHHHHHHHH--Hh
Confidence 456777778775321 222222222333333345555433321 0 1125677765544433 345 67
Q ss_pred eeEEEec----CChhhHHHHHHhCCcEEecCCCc--chhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhC
Q psy16503 83 VKVFISH----GGFLGTTEALYSGVPIIGIPMFG--DQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLG 149 (244)
Q Consensus 83 ~~l~Ith----gG~~s~~Eal~~gvP~i~vP~~~--dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~ 149 (244)
+|+++.- |-..+.+||+++|+|+|+....+ |...+.....+.|.|..++.. +.+++.++|.+++.
T Consensus 371 aDv~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~~~~G~~~~~~--~~~~l~~~i~~~l~ 441 (476)
T cd03791 371 ADFFLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTGEGTGFVFEGY--NADALLAALRRALA 441 (476)
T ss_pred CCEEECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCCCCCeEEeCCC--CHHHHHHHHHHHHH
Confidence 8888853 22357899999999999865422 221111111134589988765 58899999999875
No 111
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=96.86 E-value=0.0031 Score=47.28 Aligned_cols=78 Identities=22% Similarity=0.295 Sum_probs=47.8
Q ss_pred CCCEEEeccCChh-hhhCCCCeeEEEe--c---CChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCC
Q psy16503 63 IDKILLKSWAPQR-DILDHPNVKVFIS--H---GGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQIT 136 (244)
Q Consensus 63 ~~nv~~~~~~pq~-~lL~h~~~~l~It--h---gG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~ 136 (244)
.+|+.+.+|++.. +++ .++++.+. . |-.+++.|++++|+|+|+.+. ......+..+.|..+ .+ +
T Consensus 52 ~~~v~~~g~~~e~~~~l--~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-----~~~~~~~~~~~~~~~-~~--~ 121 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEIL--AAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-----GAEGIVEEDGCGVLV-AN--D 121 (135)
T ss_dssp HCTEEEE-S-HHHHHHH--HC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-----HCHCHS---SEEEE--TT---
T ss_pred CCCEEEcCCHHHHHHHH--HhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-----chhhheeecCCeEEE-CC--C
Confidence 5699999998643 456 45666655 1 235899999999999999765 122333446788777 22 7
Q ss_pred HHHHHHHHHHHhCC
Q psy16503 137 EETVLVALRTVLGN 150 (244)
Q Consensus 137 ~~~l~~ai~~ll~~ 150 (244)
.+++.++|.++++|
T Consensus 122 ~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 122 PEELAEAIERLLND 135 (135)
T ss_dssp HHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhcC
Confidence 89999999999865
No 112
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=96.84 E-value=0.034 Score=49.41 Aligned_cols=159 Identities=14% Similarity=0.162 Sum_probs=102.2
Q ss_pred HhcCCCceEEEEcCCCCCCCCCCHHHHHHHHH----HHhcCC-CeEEEEecCCC--------CCCCCCCEEEecc---CC
Q psy16503 10 LDESVNGVIYFSMGSIIQGKSFPSDKRKAFLR----AFEQIP-QRVIWKWEGEN--------MSGKIDKILLKSW---AP 73 (244)
Q Consensus 10 l~~~~~~vI~vs~Gs~~~~~~~~~~~~~~i~~----al~~~~-~~viw~~~~~~--------~~~~~~nv~~~~~---~p 73 (244)
+...+++.+++++=-... .. +.++.+.+ ..+..+ ..|+.-..... .-+..+++++.+- .+
T Consensus 199 ~~~~~~~~iLvT~HRreN---~~-~~~~~i~~al~~i~~~~~~~~viyp~H~~~~v~e~~~~~L~~~~~v~li~pl~~~~ 274 (383)
T COG0381 199 LDDKDKKYILVTAHRREN---VG-EPLEEICEALREIAEEYPDVIVIYPVHPRPRVRELVLKRLKNVERVKLIDPLGYLD 274 (383)
T ss_pred hccccCcEEEEEcchhhc---cc-ccHHHHHHHHHHHHHhCCCceEEEeCCCChhhhHHHHHHhCCCCcEEEeCCcchHH
Confidence 333445789998744422 22 33444444 444442 24444333221 0112346777664 45
Q ss_pred hhhhhCCCCeeEEEecCChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCChhH
Q psy16503 74 QRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSY 153 (244)
Q Consensus 74 q~~lL~h~~~~l~IthgG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~~y 153 (244)
...++ .++.+++|-.|. -.-||...|+|++.+=..-+++. ..+.|.-+.+.. +.+.+.+++.+++++++.
T Consensus 275 f~~L~--~~a~~iltDSGg-iqEEAp~lg~Pvl~lR~~TERPE----~v~agt~~lvg~---~~~~i~~~~~~ll~~~~~ 344 (383)
T COG0381 275 FHNLM--KNAFLILTDSGG-IQEEAPSLGKPVLVLRDTTERPE----GVEAGTNILVGT---DEENILDAATELLEDEEF 344 (383)
T ss_pred HHHHH--HhceEEEecCCc-hhhhHHhcCCcEEeeccCCCCcc----ceecCceEEeCc---cHHHHHHHHHHHhhChHH
Confidence 66777 568899997664 47899999999999977777776 345566666654 579999999999999999
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q psy16503 154 KKRAEKVARLFQDRPMPPLDTAIYWIEHVIR 184 (244)
Q Consensus 154 ~~~a~~~s~~~~~~~~~~~~~a~~~ie~~~~ 184 (244)
.++|.+...-+.+ ..+.++.++.+.+-..
T Consensus 345 ~~~m~~~~npYgd--g~as~rIv~~l~~~~~ 373 (383)
T COG0381 345 YERMSNAKNPYGD--GNASERIVEILLNYFD 373 (383)
T ss_pred HHHHhcccCCCcC--cchHHHHHHHHHHHhh
Confidence 9988887766665 3456666665554443
No 113
>PRK10125 putative glycosyl transferase; Provisional
Probab=96.75 E-value=0.05 Score=49.23 Aligned_cols=99 Identities=14% Similarity=0.126 Sum_probs=63.8
Q ss_pred HHHHHHHHhcCCCe-EEEEecCCCCCCCCCCEEEeccCC-h---hhhhCCCCeeEEEec----CChhhHHHHHHhCCcEE
Q psy16503 36 RKAFLRAFEQIPQR-VIWKWEGENMSGKIDKILLKSWAP-Q---RDILDHPNVKVFISH----GGFLGTTEALYSGVPII 106 (244)
Q Consensus 36 ~~~i~~al~~~~~~-viw~~~~~~~~~~~~nv~~~~~~p-q---~~lL~h~~~~l~Ith----gG~~s~~Eal~~gvP~i 106 (244)
...+++++..++.. -++..|+.. +..++++....+.+ + .+++ ..+|+||.- |-.+++.||+++|+|+|
T Consensus 258 ~~~li~A~~~l~~~~~L~ivG~g~-~~~~~~v~~~g~~~~~~~l~~~y--~~aDvfV~pS~~Egfp~vilEAmA~G~PVV 334 (405)
T PRK10125 258 DQQLVREMMALGDKIELHTFGKFS-PFTAGNVVNHGFETDKRKLMSAL--NQMDALVFSSRVDNYPLILCEALSIGVPVI 334 (405)
T ss_pred HHHHHHHHHhCCCCeEEEEEcCCC-cccccceEEecCcCCHHHHHHHH--HhCCEEEECCccccCcCHHHHHHHcCCCEE
Confidence 45677887776543 244455422 22345677777753 3 2345 568888863 55689999999999999
Q ss_pred ecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHH
Q psy16503 107 GIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVAL 144 (244)
Q Consensus 107 ~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai 144 (244)
+....+ . ..+...+.|..+++. +.+.|.+++
T Consensus 335 at~~gG----~-~Eiv~~~~G~lv~~~--d~~~La~~~ 365 (405)
T PRK10125 335 ATHSDA----A-REVLQKSGGKTVSEE--EVLQLAQLS 365 (405)
T ss_pred EeCCCC----h-HHhEeCCcEEEECCC--CHHHHHhcc
Confidence 998765 1 223334579988766 467777654
No 114
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=96.69 E-value=0.056 Score=50.72 Aligned_cols=119 Identities=19% Similarity=0.148 Sum_probs=73.9
Q ss_pred ceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCC-eEEEEecCCC----C------CCCCCCEEEeccCChh-hhhCCCCe
Q psy16503 16 GVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQ-RVIWKWEGEN----M------SGKIDKILLKSWAPQR-DILDHPNV 83 (244)
Q Consensus 16 ~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~-~viw~~~~~~----~------~~~~~nv~~~~~~pq~-~lL~h~~~ 83 (244)
..++.+.|-.... ..+...++.+...++..+. ++++ +|+.. + .+..++|.+.++.++. +++ ..+
T Consensus 398 ~~vIg~VgRl~~~-Kg~~~LI~A~a~llk~~pdirLvI-VGdG~~~eeLk~la~elgL~d~V~FlG~~~Dv~~~L--aaA 473 (578)
T PRK15490 398 DTTIGGVFRFVGD-KNPFAWIDFAARYLQHHPATRFVL-VGDGDLRAEAQKRAEQLGILERILFVGASRDVGYWL--QKM 473 (578)
T ss_pred CcEEEEEEEEehh-cCHHHHHHHHHHHHhHCCCeEEEE-EeCchhHHHHHHHHHHcCCCCcEEECCChhhHHHHH--HhC
Confidence 3455566655432 2245556666665555554 5444 44321 1 1245789999986544 456 778
Q ss_pred eEEEec---CC-hhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHH
Q psy16503 84 KVFISH---GG-FLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVAL 144 (244)
Q Consensus 84 ~l~Ith---gG-~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai 144 (244)
|+|+.. -| .+++.||+++|+|+|+...- .+...+.+...|..++..+ .+.+.+++
T Consensus 474 DVfVlPS~~EGfp~vlLEAMA~GlPVVATdvG----G~~EiV~dG~nG~LVp~~D--~~aLa~ai 532 (578)
T PRK15490 474 NVFILFSRYEGLPNVLIEAQMVGVPVISTPAG----GSAECFIEGVSGFILDDAQ--TVNLDQAC 532 (578)
T ss_pred CEEEEcccccCccHHHHHHHHhCCCEEEeCCC----CcHHHcccCCcEEEECCCC--hhhHHHHH
Confidence 999863 33 67999999999999988653 3456666677898887654 34444444
No 115
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=96.64 E-value=0.13 Score=45.80 Aligned_cols=119 Identities=18% Similarity=0.159 Sum_probs=70.5
Q ss_pred ceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCC-eEEEEecC-CC--CC--CCCCCEEEeccCChhh---hhCCCCeeEE
Q psy16503 16 GVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQ-RVIWKWEG-EN--MS--GKIDKILLKSWAPQRD---ILDHPNVKVF 86 (244)
Q Consensus 16 ~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~-~viw~~~~-~~--~~--~~~~nv~~~~~~pq~~---lL~h~~~~l~ 86 (244)
+.+++..|+... ....+.+..+++ ..+. ++++.-++ .. .. ...+||++.+++|..+ .+ ..+|++
T Consensus 205 ~~~i~y~G~l~~--~~d~~ll~~la~---~~p~~~~vliG~~~~~~~~~~~~~~~nV~~~G~~~~~~l~~~l--~~~Dv~ 277 (373)
T cd04950 205 RPVIGYYGAIAE--WLDLELLEALAK---ARPDWSFVLIGPVDVSIDPSALLRLPNVHYLGPKPYKELPAYL--AGFDVA 277 (373)
T ss_pred CCEEEEEecccc--ccCHHHHHHHHH---HCCCCEEEEECCCcCccChhHhccCCCEEEeCCCCHHHHHHHH--HhCCEE
Confidence 556777788854 233444444443 3343 55543222 11 11 1247999999998664 45 456666
Q ss_pred Ee--------cCC-hhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCCh
Q psy16503 87 IS--------HGG-FLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNP 151 (244)
Q Consensus 87 It--------hgG-~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~ 151 (244)
+. .++ .+.+.|++++|+|+|..++- ......+.+.... + +.+++.++|++++.++
T Consensus 278 l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~~-------~~~~~~~~~~~~~-~--d~~~~~~ai~~~l~~~ 341 (373)
T cd04950 278 ILPFRLNELTRATSPLKLFEYLAAGKPVVATPLP-------EVRRYEDEVVLIA-D--DPEEFVAAIEKALLED 341 (373)
T ss_pred ecCCccchhhhcCCcchHHHHhccCCCEEecCcH-------HHHhhcCcEEEeC-C--CHHHHHHHHHHHHhcC
Confidence 53 223 35699999999999988641 2222223233332 2 6899999999976543
No 116
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=96.62 E-value=0.063 Score=48.77 Aligned_cols=88 Identities=18% Similarity=0.125 Sum_probs=58.9
Q ss_pred CCCCEEEeccCChhh---hhCCCCeeEEEec----CChhhHHHHHHhCCcEEecCCCcchhhHHHHHH---HcCceeecC
Q psy16503 62 KIDKILLKSWAPQRD---ILDHPNVKVFISH----GGFLGTTEALYSGVPIIGIPMFGDQKANIRVVE---KAGFGVTLP 131 (244)
Q Consensus 62 ~~~nv~~~~~~pq~~---lL~h~~~~l~Ith----gG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~---~~G~g~~l~ 131 (244)
..++|.+.+++|+.+ +| ..+++++.- |=..++.||+++|+|+|+....+.-. ..+. +...|...+
T Consensus 303 l~~~V~f~g~v~~~~l~~~l--~~adv~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~~---~iv~~~~~g~~G~l~~ 377 (419)
T cd03806 303 LEDKVEFVVNAPFEELLEEL--STASIGLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPLL---DIVVPWDGGPTGFLAS 377 (419)
T ss_pred CCCeEEEecCCCHHHHHHHH--HhCeEEEECCccCCcccHHHHHHHcCCcEEEEcCCCCch---heeeccCCCCceEEeC
Confidence 457899999988664 56 567776642 22358999999999999875433111 1122 345677652
Q ss_pred CCCCCHHHHHHHHHHHhCChh-HHHHHH
Q psy16503 132 YDQITEETVLVALRTVLGNPS-YKKRAE 158 (244)
Q Consensus 132 ~~~~~~~~l~~ai~~ll~~~~-y~~~a~ 158 (244)
+.+++.++|.++++++. .++.+.
T Consensus 378 ----d~~~la~ai~~ll~~~~~~~~~~~ 401 (419)
T cd03806 378 ----TAEEYAEAIEKILSLSEEERLRIR 401 (419)
T ss_pred ----CHHHHHHHHHHHHhCCHHHHHHHH
Confidence 68999999999998654 343333
No 117
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=96.58 E-value=0.16 Score=49.73 Aligned_cols=95 Identities=14% Similarity=0.165 Sum_probs=64.0
Q ss_pred CCCEEEeccC-Chh---hhhCC--CCeeEEEec----CChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCC
Q psy16503 63 IDKILLKSWA-PQR---DILDH--PNVKVFISH----GGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPY 132 (244)
Q Consensus 63 ~~nv~~~~~~-pq~---~lL~h--~~~~l~Ith----gG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~ 132 (244)
.++|.+.++. |.. +++.+ ..+++|+.- |-..++.||+++|+|+|+-...+ ....+.+-.-|..+++
T Consensus 618 ~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT~~GG----~~EiV~dg~tGfLVdp 693 (784)
T TIGR02470 618 HGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFATRFGG----PLEIIQDGVSGFHIDP 693 (784)
T ss_pred CCeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEcCCCC----HHHHhcCCCcEEEeCC
Confidence 4678887764 322 23321 234677753 33468999999999999975543 4455555667999876
Q ss_pred CCCCHHHHHHHHHHHh----CChhHHHHHHHHHHH
Q psy16503 133 DQITEETVLVALRTVL----GNPSYKKRAEKVARL 163 (244)
Q Consensus 133 ~~~~~~~l~~ai~~ll----~~~~y~~~a~~~s~~ 163 (244)
. +.+++.++|.+++ .|+..++++.+.+..
T Consensus 694 ~--D~eaLA~aL~~ll~kll~dp~~~~~ms~~a~~ 726 (784)
T TIGR02470 694 Y--HGEEAAEKIVDFFEKCDEDPSYWQKISQGGLQ 726 (784)
T ss_pred C--CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5 4788888888775 688887777766544
No 118
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=96.57 E-value=0.11 Score=47.82 Aligned_cols=138 Identities=15% Similarity=0.100 Sum_probs=80.3
Q ss_pred CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcC---CCeEEEEecCC-CC--------CCCCCCEEEeccCChh---hhhC
Q psy16503 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQI---PQRVIWKWEGE-NM--------SGKIDKILLKSWAPQR---DILD 79 (244)
Q Consensus 15 ~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~---~~~viw~~~~~-~~--------~~~~~nv~~~~~~pq~---~lL~ 79 (244)
++.+++..|..... +-...+++++..+ +.++++.-+++ .. ...+.++.+....+.. .++
T Consensus 290 ~~~~i~~vGrl~~~-----Kg~~~li~a~~~l~~~~~~lvi~G~g~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~- 363 (473)
T TIGR02095 290 DVPLFGVISRLTQQ-----KGVDLLLAALPELLELGGQLVVLGTGDPELEEALRELAERYPGNVRVIIGYDEALAHLIY- 363 (473)
T ss_pred CCCEEEEEecCccc-----cChHHHHHHHHHHHHcCcEEEEECCCCHHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHH-
Confidence 45677777887542 2233344444332 34666543331 11 1245677776655554 355
Q ss_pred CCCeeEEEec---CC-hhhHHHHHHhCCcEEecCCCc--chhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhC----
Q psy16503 80 HPNVKVFISH---GG-FLGTTEALYSGVPIIGIPMFG--DQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLG---- 149 (244)
Q Consensus 80 h~~~~l~Ith---gG-~~s~~Eal~~gvP~i~vP~~~--dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~---- 149 (244)
..+|+++.- -| ..+..||+++|+|+|+-...+ |...+...-...+.|..++.. +.+++.++|.+++.
T Consensus 364 -~~aDv~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg~~e~v~~~~~~~~~~~G~l~~~~--d~~~la~~i~~~l~~~~~ 440 (473)
T TIGR02095 364 -AGADFILMPSRFEPCGLTQLYAMRYGTVPIVRRTGGLADTVVDGDPEAESGTGFLFEEY--DPGALLAALSRALRLYRQ 440 (473)
T ss_pred -HhCCEEEeCCCcCCcHHHHHHHHHCCCCeEEccCCCccceEecCCCCCCCCceEEeCCC--CHHHHHHHHHHHHHHHhc
Confidence 778888853 23 348899999999999875432 211110000122778888654 57899999999887
Q ss_pred ChhHHHHHHHHH
Q psy16503 150 NPSYKKRAEKVA 161 (244)
Q Consensus 150 ~~~y~~~a~~~s 161 (244)
|+..++++.+.+
T Consensus 441 ~~~~~~~~~~~~ 452 (473)
T TIGR02095 441 DPSLWEALQKNA 452 (473)
T ss_pred CHHHHHHHHHHH
Confidence 666555555433
No 119
>PLN00142 sucrose synthase
Probab=96.39 E-value=0.22 Score=48.88 Aligned_cols=96 Identities=11% Similarity=0.112 Sum_probs=61.1
Q ss_pred CCCEEEecc----CChhhhhC--CCCeeEEEec---CC-hhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCC
Q psy16503 63 IDKILLKSW----APQRDILD--HPNVKVFISH---GG-FLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPY 132 (244)
Q Consensus 63 ~~nv~~~~~----~pq~~lL~--h~~~~l~Ith---gG-~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~ 132 (244)
.++|.+.+. .+..++.. ...+++|+.- -| ..++.||+++|+|+|+....+ ....+.+-..|..+++
T Consensus 641 ~~~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~~EgFGLvvLEAMA~GlPVVATdvGG----~~EIV~dG~tG~LV~P 716 (815)
T PLN00142 641 KGQFRWIAAQTNRVRNGELYRYIADTKGAFVQPALYEAFGLTVVEAMTCGLPTFATCQGG----PAEIIVDGVSGFHIDP 716 (815)
T ss_pred CCcEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCcccCCCHHHHHHHHcCCCEEEcCCCC----HHHHhcCCCcEEEeCC
Confidence 456776553 23333331 0135677753 23 358999999999999976543 3444555557999886
Q ss_pred CCCCHHHHHHHHHH----HhCChhHHHHHHHHHHHH
Q psy16503 133 DQITEETVLVALRT----VLGNPSYKKRAEKVARLF 164 (244)
Q Consensus 133 ~~~~~~~l~~ai~~----ll~~~~y~~~a~~~s~~~ 164 (244)
. +.+++.++|.+ ++.|+..++++.+.+...
T Consensus 717 ~--D~eaLA~aI~~lLekLl~Dp~lr~~mg~~Ar~r 750 (815)
T PLN00142 717 Y--HGDEAANKIADFFEKCKEDPSYWNKISDAGLQR 750 (815)
T ss_pred C--CHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 5 46777777655 457888888777765443
No 120
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=96.31 E-value=0.082 Score=49.48 Aligned_cols=101 Identities=16% Similarity=0.178 Sum_probs=70.8
Q ss_pred CCEEEeccCCh---hhhhCCCCeeEEEec---CChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCH
Q psy16503 64 DKILLKSWAPQ---RDILDHPNVKVFISH---GGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITE 137 (244)
Q Consensus 64 ~nv~~~~~~pq---~~lL~h~~~~l~Ith---gG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~ 137 (244)
..|.+.++.+. ...+ ..++++|.- -|.++..||+.+|+|+| .......+....-|..++ +.
T Consensus 409 ~~v~f~gy~~e~dl~~~~--~~arl~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d~~NG~li~----d~ 475 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISAL--DKLRLIIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEHNKNGYIID----DI 475 (519)
T ss_pred cEEEEEecCCHHHHHHHH--hhheEEEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEcCCCcEEeC----CH
Confidence 57788887763 2466 678888875 47779999999999999 233445666666788773 67
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHHhCCCCChHHHHHHH
Q psy16503 138 ETVLVALRTVLGNPSYKKRAEKVARLFQDRPMPPLDTAIYW 178 (244)
Q Consensus 138 ~~l~~ai~~ll~~~~y~~~a~~~s~~~~~~~~~~~~~a~~~ 178 (244)
++|.+++..+|.+++-.+.+..-|-...++ .+....+..|
T Consensus 476 ~~l~~al~~~L~~~~~wn~~~~~sy~~~~~-yS~~~i~~kW 515 (519)
T TIGR03713 476 SELLKALDYYLDNLKNWNYSLAYSIKLIDD-YSSENIIERL 515 (519)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-hhHHHHHHHH
Confidence 999999999999987666666655544432 3434444444
No 121
>PLN02949 transferase, transferring glycosyl groups
Probab=96.22 E-value=0.039 Score=50.86 Aligned_cols=108 Identities=16% Similarity=0.063 Sum_probs=65.6
Q ss_pred CCCCEEEeccCChhh---hhCCCCeeEEEe---cCC-hhhHHHHHHhCCcEEecCCCc---chhhHHHHHHHcC-ceeec
Q psy16503 62 KIDKILLKSWAPQRD---ILDHPNVKVFIS---HGG-FLGTTEALYSGVPIIGIPMFG---DQKANIRVVEKAG-FGVTL 130 (244)
Q Consensus 62 ~~~nv~~~~~~pq~~---lL~h~~~~l~It---hgG-~~s~~Eal~~gvP~i~vP~~~---dQ~~na~~~~~~G-~g~~l 130 (244)
.+++|.+.+++|+.+ +| .++++++. +-| ..++.||+++|+|+|+....+ |-..+. ..| .|...
T Consensus 333 L~~~V~f~g~v~~~el~~ll--~~a~~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~~eIV~~~----~~g~tG~l~ 406 (463)
T PLN02949 333 LDGDVEFHKNVSYRDLVRLL--GGAVAGLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPKMDIVLDE----DGQQTGFLA 406 (463)
T ss_pred CCCcEEEeCCCCHHHHHHHH--HhCcEEEeCCccCCCChHHHHHHHcCCcEEEeCCCCCcceeeecC----CCCcccccC
Confidence 467899999998664 55 56777773 122 348999999999999986533 111100 002 34443
Q ss_pred CCCCCCHHHHHHHHHHHhCC-hhHHHHHHHHHHHHhCCCCChHHHHHHHHH
Q psy16503 131 PYDQITEETVLVALRTVLGN-PSYKKRAEKVARLFQDRPMPPLDTAIYWIE 180 (244)
Q Consensus 131 ~~~~~~~~~l~~ai~~ll~~-~~y~~~a~~~s~~~~~~~~~~~~~a~~~ie 180 (244)
+ +.+++.++|.+++++ +..++++.+.++....+ .+...-+..|.+
T Consensus 407 ~----~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~~-FS~e~~~~~~~~ 452 (463)
T PLN02949 407 T----TVEEYADAILEVLRMRETERLEIAAAARKRANR-FSEQRFNEDFKD 452 (463)
T ss_pred C----CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-cCHHHHHHHHHH
Confidence 2 689999999999984 55555555544433322 444444444433
No 122
>PRK00654 glgA glycogen synthase; Provisional
Probab=96.02 E-value=0.23 Score=45.66 Aligned_cols=125 Identities=16% Similarity=0.159 Sum_probs=71.8
Q ss_pred CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcC---CCeEEEEecCCC-----C----CCCCCCEEE-eccCChh---hhh
Q psy16503 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQI---PQRVIWKWEGEN-----M----SGKIDKILL-KSWAPQR---DIL 78 (244)
Q Consensus 15 ~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~---~~~viw~~~~~~-----~----~~~~~nv~~-~~~~pq~---~lL 78 (244)
+..+++..|..... +-...+++++.++ +.++++.-+++. + ...+.++.+ ..+ +.. .++
T Consensus 281 ~~~~i~~vGRl~~~-----KG~~~li~a~~~l~~~~~~lvivG~g~~~~~~~l~~l~~~~~~~v~~~~g~-~~~~~~~~~ 354 (466)
T PRK00654 281 DAPLFAMVSRLTEQ-----KGLDLVLEALPELLEQGGQLVLLGTGDPELEEAFRALAARYPGKVGVQIGY-DEALAHRIY 354 (466)
T ss_pred CCcEEEEeeccccc-----cChHHHHHHHHHHHhcCCEEEEEecCcHHHHHHHHHHHHHCCCcEEEEEeC-CHHHHHHHH
Confidence 35677777887432 2233344444332 456665433221 1 123456554 445 432 455
Q ss_pred CCCCeeEEEec---CC-hhhHHHHHHhCCcEEecCCCc--chhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhC
Q psy16503 79 DHPNVKVFISH---GG-FLGTTEALYSGVPIIGIPMFG--DQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLG 149 (244)
Q Consensus 79 ~h~~~~l~Ith---gG-~~s~~Eal~~gvP~i~vP~~~--dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~ 149 (244)
..+|+++.- -| ..+..||+++|+|+|+....+ |...+...-.+.+.|..++.. +.+++.++|.+++.
T Consensus 355 --~~aDv~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG~~e~v~~~~~~~~~~~G~lv~~~--d~~~la~~i~~~l~ 427 (466)
T PRK00654 355 --AGADMFLMPSRFEPCGLTQLYALRYGTLPIVRRTGGLADTVIDYNPEDGEATGFVFDDF--NAEDLLRALRRALE 427 (466)
T ss_pred --hhCCEEEeCCCCCCchHHHHHHHHCCCCEEEeCCCCccceeecCCCCCCCCceEEeCCC--CHHHHHHHHHHHHH
Confidence 788888863 23 358999999999999875422 211111001233778888765 57899999999875
No 123
>PRK14098 glycogen synthase; Provisional
Probab=96.01 E-value=0.22 Score=46.23 Aligned_cols=135 Identities=10% Similarity=0.065 Sum_probs=76.4
Q ss_pred CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCC-----C----CCCCCCEEEeccCChh---hhhCCCC
Q psy16503 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGEN-----M----SGKIDKILLKSWAPQR---DILDHPN 82 (244)
Q Consensus 15 ~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~-----~----~~~~~nv~~~~~~pq~---~lL~h~~ 82 (244)
+..++...|.....+ ..+.+-..+..+.+.+.+++..-+++. + ...+.++.+...++.. .++ +.
T Consensus 306 ~~~~i~~vgRl~~~K--G~d~li~a~~~l~~~~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~--a~ 381 (489)
T PRK14098 306 ETPLVGVIINFDDFQ--GAELLAESLEKLVELDIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAI--AG 381 (489)
T ss_pred CCCEEEEeccccccC--cHHHHHHHHHHHHhcCcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHH--Hh
Confidence 345677777774322 222222222223223445554332221 1 1246789888888764 466 78
Q ss_pred eeEEEecC----ChhhHHHHHHhCCcEEecCCCc--chhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHh---CChhH
Q psy16503 83 VKVFISHG----GFLGTTEALYSGVPIIGIPMFG--DQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVL---GNPSY 153 (244)
Q Consensus 83 ~~l~Ithg----G~~s~~Eal~~gvP~i~vP~~~--dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll---~~~~y 153 (244)
+|+|+.-. -..+..||+++|+|.|+....+ |...+ ...+.+.|..++.. +.+.+.++|.+++ +|+..
T Consensus 382 aDi~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~--~~~~~~~G~l~~~~--d~~~la~ai~~~l~~~~~~~~ 457 (489)
T PRK14098 382 LDMLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEE--VSEDKGSGFIFHDY--TPEALVAKLGEALALYHDEER 457 (489)
T ss_pred CCEEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeec--CCCCCCceeEeCCC--CHHHHHHHHHHHHHHHcCHHH
Confidence 89988632 1247899999999988875422 22111 01124678887654 5889999999865 45543
Q ss_pred HHHH
Q psy16503 154 KKRA 157 (244)
Q Consensus 154 ~~~a 157 (244)
..++
T Consensus 458 ~~~~ 461 (489)
T PRK14098 458 WEEL 461 (489)
T ss_pred HHHH
Confidence 3333
No 124
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=95.89 E-value=0.069 Score=46.40 Aligned_cols=133 Identities=13% Similarity=0.155 Sum_probs=81.5
Q ss_pred HHHHhcC-CCceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCC-C------CCCCCCCEEEecc--CChh-
Q psy16503 7 KKFLDES-VNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGE-N------MSGKIDKILLKSW--APQR- 75 (244)
Q Consensus 7 ~~~l~~~-~~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~-~------~~~~~~nv~~~~~--~pq~- 75 (244)
.+++... +++.|.+..|+.......|.+...++++.+.+.+.++++..++. + +...-++..+.+- +++.
T Consensus 170 ~~~~~~~~~~~~i~i~~gas~~~K~wp~e~~~~l~~~l~~~~~~~vl~~g~~~e~~~~~~i~~~~~~~~l~g~~sL~el~ 249 (319)
T TIGR02193 170 VAFLGHALPAPYAVLLHATSRDDKTWPEERWRELARLLLARGLQIVLPWGNDAEKQRAERIAEALPGAVVLPKMSLAEVA 249 (319)
T ss_pred hhhhhccCCCCEEEEEeCCCcccCCCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHhhCCCCeecCCCCHHHHH
Confidence 3444432 35788888887777788999999999998876566776654532 1 1111112223332 3333
Q ss_pred hhhCCCCeeEEEecCChhhHHHHHHhCCcEEec--CCCcchh----hHHHHHHHcCceeecCCCCCCHHHHHHHHHHHh
Q psy16503 76 DILDHPNVKVFISHGGFLGTTEALYSGVPIIGI--PMFGDQK----ANIRVVEKAGFGVTLPYDQITEETVLVALRTVL 148 (244)
Q Consensus 76 ~lL~h~~~~l~IthgG~~s~~Eal~~gvP~i~v--P~~~dQ~----~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll 148 (244)
.++ .+|+++|+. ..|-++=|.+.|+|++++ |-...+. .+...+. + -..++++++++.++++++|
T Consensus 250 ali--~~a~l~I~~-DSgp~HlAaa~g~P~i~lfg~t~p~~~~P~~~~~~~~~----~--~~~~~I~~~~V~~ai~~~~ 319 (319)
T TIGR02193 250 ALL--AGADAVVGV-DTGLTHLAAALDKPTVTLYGATDPGRTGGYGKPNVALL----G--ESGANPTPDEVLAALEELL 319 (319)
T ss_pred HHH--HcCCEEEeC-CChHHHHHHHcCCCEEEEECCCCHhhcccCCCCceEEc----c--CccCCCCHHHHHHHHHhhC
Confidence 566 789999997 345678888999999987 3211110 0111111 0 0246789999999998875
No 125
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=95.19 E-value=0.2 Score=44.84 Aligned_cols=146 Identities=17% Similarity=0.175 Sum_probs=87.5
Q ss_pred CCceEEEEcCCCCCCCCCCHHHHHHHHHHHhcC----CC-eEEEEecCCC--------CCCCCCCEEEecc-CChhhhhC
Q psy16503 14 VNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQI----PQ-RVIWKWEGEN--------MSGKIDKILLKSW-APQRDILD 79 (244)
Q Consensus 14 ~~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~----~~-~viw~~~~~~--------~~~~~~nv~~~~~-~pq~~lL~ 79 (244)
++++|.+--||-.. --...+..++++.+.+ |. ++++...... ....+.++.+... -...+++
T Consensus 183 ~~~iIaLLPGSR~~---EI~rllP~~l~aa~~l~~~~p~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~m- 258 (373)
T PF02684_consen 183 DKPIIALLPGSRKS---EIKRLLPIFLEAAKLLKKQRPDLQFVVPVAPEVHEELIEEILAEYPPDVSIVIIEGESYDAM- 258 (373)
T ss_pred CCcEEEEeCCCCHH---HHHHHHHHHHHHHHHHHHhCCCeEEEEecCCHHHHHHHHHHHHhhCCCCeEEEcCCchHHHH-
Confidence 46889999999842 1134444455554432 32 5665543311 0112223332222 2455677
Q ss_pred CCCeeEEEecCChhhHHHHHHhCCcEEec-CCCcchhhHHHHHHHcCc-eee---cC--------CCCCCHHHHHHHHHH
Q psy16503 80 HPNVKVFISHGGFLGTTEALYSGVPIIGI-PMFGDQKANIRVVEKAGF-GVT---LP--------YDQITEETVLVALRT 146 (244)
Q Consensus 80 h~~~~l~IthgG~~s~~Eal~~gvP~i~v-P~~~dQ~~na~~~~~~G~-g~~---l~--------~~~~~~~~l~~ai~~ 146 (244)
..+|+.+.-.|. .+.|+...|+|++++ -...=...-++++.+... |+. .+ .++++++.+.+++.+
T Consensus 259 -~~ad~al~~SGT-aTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk~~~isL~Niia~~~v~PEliQ~~~~~~~i~~~~~~ 336 (373)
T PF02684_consen 259 -AAADAALAASGT-ATLEAALLGVPMVVAYKVSPLTYFIAKRLVKVKYISLPNIIAGREVVPELIQEDATPENIAAELLE 336 (373)
T ss_pred -HhCcchhhcCCH-HHHHHHHhCCCEEEEEcCcHHHHHHHHHhhcCCEeechhhhcCCCcchhhhcccCCHHHHHHHHHH
Confidence 678888888886 678999999999887 333334556666655422 211 11 357899999999999
Q ss_pred HhCChhHHHHHHHHHHHHh
Q psy16503 147 VLGNPSYKKRAEKVARLFQ 165 (244)
Q Consensus 147 ll~~~~y~~~a~~~s~~~~ 165 (244)
++.|+..++......+.+.
T Consensus 337 ll~~~~~~~~~~~~~~~~~ 355 (373)
T PF02684_consen 337 LLENPEKRKKQKELFREIR 355 (373)
T ss_pred HhcCHHHHHHHHHHHHHHH
Confidence 9999876555555444443
No 126
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=95.15 E-value=0.25 Score=45.09 Aligned_cols=85 Identities=13% Similarity=0.274 Sum_probs=65.3
Q ss_pred hhhCCCCeeEEEecCChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceee-cCCCCCCHHHHHHHHHHHhCC-hhH
Q psy16503 76 DILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVT-LPYDQITEETVLVALRTVLGN-PSY 153 (244)
Q Consensus 76 ~lL~h~~~~l~IthgG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~-l~~~~~~~~~l~~ai~~ll~~-~~y 153 (244)
.++ .+++++|..= +-++.-|+..|||+++++. .+.....+...|.... ++.++++.++|.+.++++++| +.+
T Consensus 323 ~iI--s~~dl~ig~R-lHa~I~a~~~gvP~i~i~Y---~~K~~~~~~~lg~~~~~~~~~~l~~~~Li~~v~~~~~~r~~~ 396 (426)
T PRK10017 323 KIL--GACELTVGTR-LHSAIISMNFGTPAIAINY---EHKSAGIMQQLGLPEMAIDIRHLLDGSLQAMVADTLGQLPAL 396 (426)
T ss_pred HHH--hhCCEEEEec-chHHHHHHHcCCCEEEeee---hHHHHHHHHHcCCccEEechhhCCHHHHHHHHHHHHhCHHHH
Confidence 567 7899999842 2357778899999999988 2555566688888755 788889999999999999988 456
Q ss_pred HHHHHHHHHHHhC
Q psy16503 154 KKRAEKVARLFQD 166 (244)
Q Consensus 154 ~~~a~~~s~~~~~ 166 (244)
++..++.....+.
T Consensus 397 ~~~l~~~v~~~r~ 409 (426)
T PRK10017 397 NARLAEAVSRERQ 409 (426)
T ss_pred HHHHHHHHHHHHH
Confidence 7776666666554
No 127
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=95.10 E-value=0.57 Score=42.93 Aligned_cols=125 Identities=14% Similarity=0.218 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHhcCCC-eEEEEecCC------CCCCCCCCEEEecc-CC-h-hhhhCCCCeeEEEecCC--hhhHHHHHH
Q psy16503 33 SDKRKAFLRAFEQIPQ-RVIWKWEGE------NMSGKIDKILLKSW-AP-Q-RDILDHPNVKVFISHGG--FLGTTEALY 100 (244)
Q Consensus 33 ~~~~~~i~~al~~~~~-~viw~~~~~------~~~~~~~nv~~~~~-~p-q-~~lL~h~~~~l~IthgG--~~s~~Eal~ 100 (244)
...++.+.....++|. ++-..++.+ .+ ..-+|+.+.+- .+ . .+++....+-+-|+||+ ..++.||+.
T Consensus 291 s~~I~~i~~Lv~~lPd~~f~Iga~te~s~kL~~L-~~y~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~ 369 (438)
T TIGR02919 291 SDQIEHLEEIVQALPDYHFHIAALTEMSSKLMSL-DKYDNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFE 369 (438)
T ss_pred HHHHHHHHHHHHhCCCcEEEEEecCcccHHHHHH-HhcCCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHH
Confidence 5667777777778885 554444432 23 22367666654 55 3 35774444444556755 689999999
Q ss_pred hCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCChhHHHHHHHHHHHHhC
Q psy16503 101 SGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSYKKRAEKVARLFQD 166 (244)
Q Consensus 101 ~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~~y~~~a~~~s~~~~~ 166 (244)
+|+|+++.=..... ...+.. |.....+ +.+++.++|.++|.+++-.+.+....+....
T Consensus 370 ~G~pI~afd~t~~~---~~~i~~---g~l~~~~--~~~~m~~~i~~lL~d~~~~~~~~~~q~~~a~ 427 (438)
T TIGR02919 370 YNLLILGFEETAHN---RDFIAS---ENIFEHN--EVDQLISKLKDLLNDPNQFRELLEQQREHAN 427 (438)
T ss_pred cCCcEEEEecccCC---cccccC---CceecCC--CHHHHHHHHHHHhcCHHHHHHHHHHHHHHhc
Confidence 99999997432111 111111 5555443 5799999999999998655555554544443
No 128
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=95.06 E-value=0.62 Score=44.20 Aligned_cols=140 Identities=12% Similarity=0.059 Sum_probs=82.7
Q ss_pred CCceEEEEcCCCCCCCCCCHHHHHHHHHHHh--cC--CCeEEEEecCCC--------CCCCC-CCEEEeccCChhhhhCC
Q psy16503 14 VNGVIYFSMGSIIQGKSFPSDKRKAFLRAFE--QI--PQRVIWKWEGEN--------MSGKI-DKILLKSWAPQRDILDH 80 (244)
Q Consensus 14 ~~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~--~~--~~~viw~~~~~~--------~~~~~-~nv~~~~~~pq~~lL~h 80 (244)
++++|.+--||-.. --...+..++++.+ .+ +.+++....... ..+.+ .++.+..--...+++
T Consensus 412 ~~~iIaLLPGSR~~---EI~rllPv~l~aa~~~~l~~~l~fvvp~a~~~~~~~i~~~~~~~~~~~~~ii~~~~~~~~m-- 486 (608)
T PRK01021 412 DKPIVAAFPGSRRG---DILRNLTIQVQAFLASSLASTHQLLVSSANPKYDHLILEVLQQEGCLHSHIVPSQFRYELM-- 486 (608)
T ss_pred CCCEEEEECCCCHH---HHHHHHHHHHHHHHHHHhccCeEEEEecCchhhHHHHHHHHhhcCCCCeEEecCcchHHHH--
Confidence 45788898999843 22455666677766 43 235655432211 11111 122332210124677
Q ss_pred CCeeEEEecCChhhHHHHHHhCCcEEec-CCCcchhhHHHHHHHc----------Cceee-----cC-CCCCCHHHHHHH
Q psy16503 81 PNVKVFISHGGFLGTTEALYSGVPIIGI-PMFGDQKANIRVVEKA----------GFGVT-----LP-YDQITEETVLVA 143 (244)
Q Consensus 81 ~~~~l~IthgG~~s~~Eal~~gvP~i~v-P~~~dQ~~na~~~~~~----------G~g~~-----l~-~~~~~~~~l~~a 143 (244)
..||+.+.-.|. .+.|++..|+||+++ -...=-..-++++.+. =+|.. +. .++++++++.++
T Consensus 487 ~aaD~aLaaSGT-aTLEaAL~g~PmVV~YK~s~Lty~Iak~Lvki~i~yIsLpNIIagr~VvPEllqgQ~~~tpe~La~~ 565 (608)
T PRK01021 487 RECDCALAKCGT-IVLETALNQTPTIVTCQLRPFDTFLAKYIFKIILPAYSLPNIILGSTIFPEFIGGKKDFQPEEVAAA 565 (608)
T ss_pred HhcCeeeecCCH-HHHHHHHhCCCEEEEEecCHHHHHHHHHHHhccCCeeehhHHhcCCCcchhhcCCcccCCHHHHHHH
Confidence 789999999887 678999999999986 2222233456666651 11211 21 357899999999
Q ss_pred HHHHhCChhHHHHHHHH
Q psy16503 144 LRTVLGNPSYKKRAEKV 160 (244)
Q Consensus 144 i~~ll~~~~y~~~a~~~ 160 (244)
+ +++.|+.+++++++-
T Consensus 566 l-~lL~d~~~r~~~~~~ 581 (608)
T PRK01021 566 L-DILKTSQSKEKQKDA 581 (608)
T ss_pred H-HHhcCHHHHHHHHHH
Confidence 7 888887666555543
No 129
>PRK14099 glycogen synthase; Provisional
Probab=94.75 E-value=1.1 Score=41.49 Aligned_cols=97 Identities=16% Similarity=0.154 Sum_probs=57.6
Q ss_pred CCCE-EEeccCChhhhhCCCCeeEEEec----CChhhHHHHHHhCCcEEecCCCc--chhhHHHHH-H--HcCceeecCC
Q psy16503 63 IDKI-LLKSWAPQRDILDHPNVKVFISH----GGFLGTTEALYSGVPIIGIPMFG--DQKANIRVV-E--KAGFGVTLPY 132 (244)
Q Consensus 63 ~~nv-~~~~~~pq~~lL~h~~~~l~Ith----gG~~s~~Eal~~gvP~i~vP~~~--dQ~~na~~~-~--~~G~g~~l~~ 132 (244)
+.++ .+.++-....-+..+.+|+|+.- |-..+..||+++|+|.|+....+ |........ + ..+.|..++.
T Consensus 349 ~~~v~~~~G~~~~l~~~~~a~aDifv~PS~~E~fGl~~lEAma~G~ppVvs~~GGl~d~V~~~~~~~~~~~~~~G~l~~~ 428 (485)
T PRK14099 349 PGQIGVVIGYDEALAHLIQAGADALLVPSRFEPCGLTQLCALRYGAVPVVARVGGLADTVVDANEMAIATGVATGVQFSP 428 (485)
T ss_pred CCCEEEEeCCCHHHHHHHHhcCCEEEECCccCCCcHHHHHHHHCCCCcEEeCCCCccceeecccccccccCCCceEEeCC
Confidence 4555 56666333322222568998862 22357899999997766654322 221111000 1 1156888876
Q ss_pred CCCCHHHHHHHHHH---HhCChhHHHHHHHHH
Q psy16503 133 DQITEETVLVALRT---VLGNPSYKKRAEKVA 161 (244)
Q Consensus 133 ~~~~~~~l~~ai~~---ll~~~~y~~~a~~~s 161 (244)
. +.+++.++|.+ +++|+..++++.+.+
T Consensus 429 ~--d~~~La~ai~~a~~l~~d~~~~~~l~~~~ 458 (485)
T PRK14099 429 V--TADALAAALRKTAALFADPVAWRRLQRNG 458 (485)
T ss_pred C--CHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 5 58899999997 667777666666654
No 130
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=94.62 E-value=0.83 Score=39.93 Aligned_cols=122 Identities=11% Similarity=0.111 Sum_probs=73.8
Q ss_pred HHHhcCCCceEEEEcCCCCCCCCCCHHHHHHHHHHHh----cCCCeEEEEecCCC----------CCCCCCCEEEecc--
Q psy16503 8 KFLDESVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFE----QIPQRVIWKWEGEN----------MSGKIDKILLKSW-- 71 (244)
Q Consensus 8 ~~l~~~~~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~----~~~~~viw~~~~~~----------~~~~~~nv~~~~~-- 71 (244)
.-+....++.+.|-.|+......++.+....+++.+. +.+..+....+.-. .....+.+.+.+-
T Consensus 139 ~~~~~l~~p~~avLIGG~s~~~~~~~~~~~~l~~~l~~~~~~~~~~~~vttSRRTp~~~~~~L~~~~~~~~~~~~~~~~~ 218 (311)
T PF06258_consen 139 PRLAALPRPRVAVLIGGDSKHYRWDEEDAERLLDQLAALAAAYGGSLLVTTSRRTPPEAEAALRELLKDNPGVYIWDGTG 218 (311)
T ss_pred hhhccCCCCeEEEEECcCCCCcccCHHHHHHHHHHHHHHHHhCCCeEEEEcCCCCcHHHHHHHHHhhcCCCceEEecCCC
Confidence 3344445677888888776666777775555544443 33445555554311 1112344433332
Q ss_pred -CChhhhhCCCCeeEE-EecCChhhHHHHHHhCCcEEecCCCcchhh----HHHHHHHcCceeecCC
Q psy16503 72 -APQRDILDHPNVKVF-ISHGGFLGTTEALYSGVPIIGIPMFGDQKA----NIRVVEKAGFGVTLPY 132 (244)
Q Consensus 72 -~pq~~lL~h~~~~l~-IthgG~~s~~Eal~~gvP~i~vP~~~dQ~~----na~~~~~~G~g~~l~~ 132 (244)
-|..+.|+ .+|.+ ||--..+.++||+..|+|+.++|+.. +.. -...+.+.|+-..++.
T Consensus 219 ~nPy~~~La--~ad~i~VT~DSvSMvsEA~~tG~pV~v~~l~~-~~~r~~r~~~~L~~~g~~r~~~~ 282 (311)
T PF06258_consen 219 ENPYLGFLA--AADAIVVTEDSVSMVSEAAATGKPVYVLPLPG-RSGRFRRFHQSLEERGAVRPFTG 282 (311)
T ss_pred CCcHHHHHH--hCCEEEEcCccHHHHHHHHHcCCCEEEecCCC-cchHHHHHHHHHHHCCCEEECCC
Confidence 36778884 45554 55555788999999999999998865 222 4455666777777653
No 131
>PLN02501 digalactosyldiacylglycerol synthase
Probab=94.55 E-value=0.42 Score=46.14 Aligned_cols=80 Identities=20% Similarity=0.120 Sum_probs=55.3
Q ss_pred CEEEeccCChh-hhhCCCCeeEEEec----CChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHH
Q psy16503 65 KILLKSWAPQR-DILDHPNVKVFISH----GGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEET 139 (244)
Q Consensus 65 nv~~~~~~pq~-~lL~h~~~~l~Ith----gG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~ 139 (244)
++.+.++.+.. +++ ..+|+|+.- |=.+++.||+++|+|+|+....+... +...+.|... -+.++
T Consensus 602 ~V~FLG~~dd~~~ly--asaDVFVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V~~g~nGll~----~D~Ea 670 (794)
T PLN02501 602 NLNFLKGRDHADDSL--HGYKVFINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----FRSFPNCLTY----KTSED 670 (794)
T ss_pred EEEecCCCCCHHHHH--HhCCEEEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----EeecCCeEec----CCHHH
Confidence 47777777655 477 678888863 33678999999999999986644321 2222333332 25899
Q ss_pred HHHHHHHHhCChhHHH
Q psy16503 140 VLVALRTVLGNPSYKK 155 (244)
Q Consensus 140 l~~ai~~ll~~~~y~~ 155 (244)
+.++|.+++.++.-+.
T Consensus 671 fAeAI~~LLsd~~~rl 686 (794)
T PLN02501 671 FVAKVKEALANEPQPL 686 (794)
T ss_pred HHHHHHHHHhCchhhh
Confidence 9999999998876443
No 132
>PLN02846 digalactosyldiacylglycerol synthase
Probab=94.49 E-value=2.2 Score=39.39 Aligned_cols=73 Identities=16% Similarity=0.082 Sum_probs=52.3
Q ss_pred EeccCChhhhhCCCCeeEEEec----CChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHH
Q psy16503 68 LKSWAPQRDILDHPNVKVFISH----GGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVA 143 (244)
Q Consensus 68 ~~~~~pq~~lL~h~~~~l~Ith----gG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~a 143 (244)
+..+.+..+++ ..+|+|+.- +-.+++.||+++|+|+|+....+ + ..+.+.+.|...+ +.+++.++
T Consensus 288 f~G~~~~~~~~--~~~DvFv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v~~~~ng~~~~----~~~~~a~a 356 (462)
T PLN02846 288 YPGRDHADPLF--HDYKVFLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFFKQFPNCRTYD----DGKGFVRA 356 (462)
T ss_pred ECCCCCHHHHH--HhCCEEEECCCcccchHHHHHHHHcCCcEEEecCCC----c-ceeecCCceEecC----CHHHHHHH
Confidence 44555555677 677999876 44689999999999999985433 1 3344455555552 57899999
Q ss_pred HHHHhCCh
Q psy16503 144 LRTVLGNP 151 (244)
Q Consensus 144 i~~ll~~~ 151 (244)
+.+++.++
T Consensus 357 i~~~l~~~ 364 (462)
T PLN02846 357 TLKALAEE 364 (462)
T ss_pred HHHHHccC
Confidence 99999764
No 133
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=94.30 E-value=0.42 Score=42.40 Aligned_cols=132 Identities=18% Similarity=0.141 Sum_probs=73.9
Q ss_pred HHhcCCCeEEEEecC---CCC---CCCCCCEEEecc-CChhhhhCCCCeeEEEecCChhhHHHHHHhCCcEEecCCCcch
Q psy16503 42 AFEQIPQRVIWKWEG---ENM---SGKIDKILLKSW-APQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQ 114 (244)
Q Consensus 42 al~~~~~~viw~~~~---~~~---~~~~~nv~~~~~-~pq~~lL~h~~~~l~IthgG~~s~~Eal~~gvP~i~vP~~~dQ 114 (244)
.+...+..++++... ... ....+++...+. .+-.++| ..+|+.||--.. .+.|.+..++|+|....-.|+
T Consensus 224 ~~~~~~~~li~k~Hp~~~~~~~~~~~~~~~i~~~~~~~~~~~ll--~~aDiLITDySS-i~fD~~~l~KPiify~~D~~~ 300 (369)
T PF04464_consen 224 FLLKNNYVLIIKPHPNMKKKFKDFKEDNSNIIFVSDNEDIYDLL--AAADILITDYSS-IIFDFLLLNKPIIFYQPDLEE 300 (369)
T ss_dssp HHHTTTEEEEE--SHHHHTT----TT-TTTEEE-TT-S-HHHHH--HT-SEEEESS-T-HHHHHGGGT--EEEE-TTTTT
T ss_pred HHhCCCcEEEEEeCchhhhchhhhhccCCcEEECCCCCCHHHHH--HhcCEEEEechh-HHHHHHHhCCCEEEEeccHHH
Confidence 444555566766543 111 234567776544 4577888 789999998754 799999999999988654444
Q ss_pred hhHHH----HHHHcCceeecCCCCCCHHHHHHHHHHHhCChh-HHHHHHHHHHHHhC-CCCChHHHHHHHHH
Q psy16503 115 KANIR----VVEKAGFGVTLPYDQITEETVLVALRTVLGNPS-YKKRAEKVARLFQD-RPMPPLDTAIYWIE 180 (244)
Q Consensus 115 ~~na~----~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~~-y~~~a~~~s~~~~~-~~~~~~~~a~~~ie 180 (244)
....+ -..+...|..+ -+.++|.++|++++.++. ++++.++..+.+.. ....+.++++++|.
T Consensus 301 Y~~~rg~~~~~~~~~pg~~~----~~~~eL~~~i~~~~~~~~~~~~~~~~~~~~~~~~~Dg~s~eri~~~I~ 368 (369)
T PF04464_consen 301 YEKERGFYFDYEEDLPGPIV----YNFEELIEAIENIIENPDEYKEKREKFRDKFFKYNDGNSSERIVNYIF 368 (369)
T ss_dssp TTTTSSBSS-TTTSSSS-EE----SSHHHHHHHHTTHHHHHHHTHHHHHHHHHHHSTT--S-HHHHHHHHHH
T ss_pred HhhccCCCCchHhhCCCcee----CCHHHHHHHHHhhhhCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHh
Confidence 32210 01122223332 267999999999987654 45666666666643 22466777766653
No 134
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=94.25 E-value=0.27 Score=39.17 Aligned_cols=51 Identities=22% Similarity=0.262 Sum_probs=38.6
Q ss_pred CCCCCEEEeccCChh---hhhCCCCeeEEEecCC----hhhHHHHHHhCCcEEecCCCc
Q psy16503 61 GKIDKILLKSWAPQR---DILDHPNVKVFISHGG----FLGTTEALYSGVPIIGIPMFG 112 (244)
Q Consensus 61 ~~~~nv~~~~~~pq~---~lL~h~~~~l~IthgG----~~s~~Eal~~gvP~i~vP~~~ 112 (244)
...+|+.+.++++.. ..+. ..++++++-.. .+++.||+++|+|+|+.+..+
T Consensus 158 ~~~~~v~~~~~~~~~~~~~~~~-~~~di~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~ 215 (229)
T cd01635 158 LLLDRVIFLGGLDPEELLALLL-AAADVFVLPSLREGFGLVVLEAMACGLPVIATDVGG 215 (229)
T ss_pred CCcccEEEeCCCCcHHHHHHHh-hcCCEEEecccccCcChHHHHHHhCCCCEEEcCCCC
Confidence 346799999986322 3332 45899998775 789999999999999987644
No 135
>PLN02939 transferase, transferring glycosyl groups
Probab=94.06 E-value=4.1 Score=40.86 Aligned_cols=93 Identities=19% Similarity=0.087 Sum_probs=61.4
Q ss_pred CCCEEEeccCChh---hhhCCCCeeEEEec----CChhhHHHHHHhCCcEEecCCCc--chhhH--HHHH-HHcCceeec
Q psy16503 63 IDKILLKSWAPQR---DILDHPNVKVFISH----GGFLGTTEALYSGVPIIGIPMFG--DQKAN--IRVV-EKAGFGVTL 130 (244)
Q Consensus 63 ~~nv~~~~~~pq~---~lL~h~~~~l~Ith----gG~~s~~Eal~~gvP~i~vP~~~--dQ~~n--a~~~-~~~G~g~~l 130 (244)
+++|.+..+.+.. .++ +.+|+|+.- |-..+..||+++|+|.|+....+ |...+ ...+ ...+-|..+
T Consensus 836 ~drV~FlG~~de~lah~IY--AaADIFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~eg~NGfLf 913 (977)
T PLN02939 836 NNNIRLILKYDEALSHSIY--AASDMFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVELRNGFTF 913 (977)
T ss_pred CCeEEEEeccCHHHHHHHH--HhCCEEEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccCCCceEEe
Confidence 5678888888764 466 789999963 22458999999999999876533 22111 1111 123567777
Q ss_pred CCCCCCHHHHHHHHHHHhC----ChhHHHHHHH
Q psy16503 131 PYDQITEETVLVALRTVLG----NPSYKKRAEK 159 (244)
Q Consensus 131 ~~~~~~~~~l~~ai~~ll~----~~~y~~~a~~ 159 (244)
+.. +.+.+.++|.+++. |+..++++.+
T Consensus 914 ~~~--D~eaLa~AL~rAL~~~~~dpe~~~~L~~ 944 (977)
T PLN02939 914 LTP--DEQGLNSALERAFNYYKRKPEVWKQLVQ 944 (977)
T ss_pred cCC--CHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 654 67888888888764 6666666654
No 136
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=93.15 E-value=0.077 Score=38.10 Aligned_cols=62 Identities=13% Similarity=0.166 Sum_probs=45.4
Q ss_pred HHHHHhcC-CCceEEEEcCCCCCCCCCCH--HHHHHHHHHHhcCCCeEEEEecCCC---CCCCCCCEE
Q psy16503 6 IKKFLDES-VNGVIYFSMGSIIQGKSFPS--DKRKAFLRAFEQIPQRVIWKWEGEN---MSGKIDKIL 67 (244)
Q Consensus 6 l~~~l~~~-~~~vI~vs~Gs~~~~~~~~~--~~~~~i~~al~~~~~~viw~~~~~~---~~~~~~nv~ 67 (244)
+..|+... +++.|.+|+|+......... ..+..+++++..++..++...+... +...|+||+
T Consensus 30 ~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~~~~lg~lP~nVR 97 (97)
T PF06722_consen 30 VPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQRAELGELPDNVR 97 (97)
T ss_dssp EEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCCCGGCCS-TTTEE
T ss_pred CCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHHHHhhCCCCCCCC
Confidence 44577665 47899999999965211122 4889999999999999999988743 456788875
No 137
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=93.04 E-value=1 Score=38.24 Aligned_cols=92 Identities=11% Similarity=0.116 Sum_probs=57.2
Q ss_pred CCceEEEEcCCCCC-----CCCCCHHHHHHHHHHHhcCC-CeEEEEecCCC-----------CCCCCCCEEEeccCChhh
Q psy16503 14 VNGVIYFSMGSIIQ-----GKSFPSDKRKAFLRAFEQIP-QRVIWKWEGEN-----------MSGKIDKILLKSWAPQRD 76 (244)
Q Consensus 14 ~~~vI~vs~Gs~~~-----~~~~~~~~~~~i~~al~~~~-~~viw~~~~~~-----------~~~~~~nv~~~~~~pq~~ 76 (244)
+++.|+|-+=...- .+.......+.+.++.+..| .+++++....+ ....+..+.+.+-.+-.+
T Consensus 116 ~~~~vlv~lQ~~~D~~i~~~~~~~~~~~~~l~~~~~~~p~~~lvvK~HP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (269)
T PF05159_consen 116 NKKYVLVPLQVENDSQIRYHSPSQADFLDMLESFAKENPDAKLVVKPHPDERGGNKYSYLEELPNLPNVVIIDDDVNLYE 195 (269)
T ss_pred CCCEEEEEeeCCcCcchhccCCcHhHHHHHHHHHHHHCCCCEEEEEECchhhCCCChhHhhhhhcCCCeEEECCCCCHHH
Confidence 36777777632211 01112334444455555554 47777765411 112233455556678889
Q ss_pred hhCCCCeeEEEecCChhhHHHHHHhCCcEEec
Q psy16503 77 ILDHPNVKVFISHGGFLGTTEALYSGVPIIGI 108 (244)
Q Consensus 77 lL~h~~~~l~IthgG~~s~~Eal~~gvP~i~v 108 (244)
++ .+++.+||-.+. +-.||+.+|+|++++
T Consensus 196 Ll--~~s~~VvtinSt-vGlEAll~gkpVi~~ 224 (269)
T PF05159_consen 196 LL--EQSDAVVTINST-VGLEALLHGKPVIVF 224 (269)
T ss_pred HH--HhCCEEEEECCH-HHHHHHHcCCceEEe
Confidence 99 779999998765 678999999999997
No 138
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=92.98 E-value=6.3 Score=36.29 Aligned_cols=73 Identities=16% Similarity=0.123 Sum_probs=48.6
Q ss_pred EeccCChhh---hhCCCCeeEEEe---cCC-hhhHHHHHHhCCc----EEecCCCcchhhHHHHHHHcCceeecCCCCCC
Q psy16503 68 LKSWAPQRD---ILDHPNVKVFIS---HGG-FLGTTEALYSGVP----IIGIPMFGDQKANIRVVEKAGFGVTLPYDQIT 136 (244)
Q Consensus 68 ~~~~~pq~~---lL~h~~~~l~It---hgG-~~s~~Eal~~gvP----~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~ 136 (244)
+..++++.+ ++ ..+|+|+. +-| ..++.||+++|+| +|+--..+--.. ..-|+.+++. +
T Consensus 345 ~~g~v~~~el~~~y--~~aDv~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~~~-------~~~g~lv~p~--d 413 (460)
T cd03788 345 LYRSLPREELAALY--RAADVALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAGAAEE-------LSGALLVNPY--D 413 (460)
T ss_pred EeCCCCHHHHHHHH--HhccEEEeCccccccCcccceeEEEecCCCceEEEeccccchhh-------cCCCEEECCC--C
Confidence 345677664 45 67888885 334 4678999999999 555433221111 2346777655 5
Q ss_pred HHHHHHHHHHHhCCh
Q psy16503 137 EETVLVALRTVLGNP 151 (244)
Q Consensus 137 ~~~l~~ai~~ll~~~ 151 (244)
.+++.++|.++++++
T Consensus 414 ~~~la~ai~~~l~~~ 428 (460)
T cd03788 414 IDEVADAIHRALTMP 428 (460)
T ss_pred HHHHHHHHHHHHcCC
Confidence 789999999999865
No 139
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=92.98 E-value=0.64 Score=41.45 Aligned_cols=161 Identities=14% Similarity=0.132 Sum_probs=92.5
Q ss_pred CCCceEEEEcCCCCCCCCCCHHHHHHHHHHHhcC----C-CeEEEEecCCC--------C--CCCCCCEEEeccCChhhh
Q psy16503 13 SVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQI----P-QRVIWKWEGEN--------M--SGKIDKILLKSWAPQRDI 77 (244)
Q Consensus 13 ~~~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~----~-~~viw~~~~~~--------~--~~~~~nv~~~~~~pq~~l 77 (244)
.+.+++.+--||-.. --..++..+.++..++ | .+|+.-.-... . .....++.+.+- .-.+.
T Consensus 186 ~~~~~lalLPGSR~s---EI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~a 261 (381)
T COG0763 186 ADEKTLALLPGSRRS---EIRRLLPPFVQAAQELKARYPDLKFVLPLVNAKYRRIIEEALKWEVAGLSLILIDG-EKRKA 261 (381)
T ss_pred CCCCeEEEecCCcHH---HHHHHHHHHHHHHHHHHhhCCCceEEEecCcHHHHHHHHHHhhccccCceEEecCc-hHHHH
Confidence 346899999999843 1233444445544433 3 36666544311 0 011122222221 12235
Q ss_pred hCCCCeeEEEecCChhhHHHHHHhCCcEEecCC-CcchhhHHHHHHHcCce----eecC--------CCCCCHHHHHHHH
Q psy16503 78 LDHPNVKVFISHGGFLGTTEALYSGVPIIGIPM-FGDQKANIRVVEKAGFG----VTLP--------YDQITEETVLVAL 144 (244)
Q Consensus 78 L~h~~~~l~IthgG~~s~~Eal~~gvP~i~vP~-~~dQ~~na~~~~~~G~g----~~l~--------~~~~~~~~l~~ai 144 (244)
+ ..+|+.+...|. .+.|++.+|+||++.=- -.=-+.-++++.+.... +..+ .++++++.|.+++
T Consensus 262 ~--~~aD~al~aSGT-~tLE~aL~g~P~Vv~Yk~~~it~~iak~lvk~~yisLpNIi~~~~ivPEliq~~~~pe~la~~l 338 (381)
T COG0763 262 F--AAADAALAASGT-ATLEAALAGTPMVVAYKVKPITYFIAKRLVKLPYVSLPNILAGREIVPELIQEDCTPENLARAL 338 (381)
T ss_pred H--HHhhHHHHhccH-HHHHHHHhCCCEEEEEeccHHHHHHHHHhccCCcccchHHhcCCccchHHHhhhcCHHHHHHHH
Confidence 5 678888888886 57799999999998621 11122344444443221 1111 2568899999999
Q ss_pred HHHhCCh----hHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q psy16503 145 RTVLGNP----SYKKRAEKVARLFQDRPMPPLDTAIYWIEHV 182 (244)
Q Consensus 145 ~~ll~~~----~y~~~a~~~s~~~~~~~~~~~~~a~~~ie~~ 182 (244)
.+++.|+ ..++...++.+.++. ..+.+.++..+-..
T Consensus 339 ~~ll~~~~~~~~~~~~~~~l~~~l~~--~~~~e~aA~~vl~~ 378 (381)
T COG0763 339 EELLLNGDRREALKEKFRELHQYLRE--DPASEIAAQAVLEL 378 (381)
T ss_pred HHHhcChHhHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHH
Confidence 9999987 455666666777765 24677777655433
No 140
>PLN02316 synthase/transferase
Probab=92.66 E-value=8 Score=39.32 Aligned_cols=97 Identities=12% Similarity=-0.018 Sum_probs=59.0
Q ss_pred CCCEEEeccCChh---hhhCCCCeeEEEec----CChhhHHHHHHhCCcEEecCCCc--chhhH-------HHHHHHcCc
Q psy16503 63 IDKILLKSWAPQR---DILDHPNVKVFISH----GGFLGTTEALYSGVPIIGIPMFG--DQKAN-------IRVVEKAGF 126 (244)
Q Consensus 63 ~~nv~~~~~~pq~---~lL~h~~~~l~Ith----gG~~s~~Eal~~gvP~i~vP~~~--dQ~~n-------a~~~~~~G~ 126 (244)
+.++.+....+.. .++ +.+|+|+.- |=..+.+||+++|+|.|+-...+ |.... +......+-
T Consensus 899 ~~rV~f~g~~de~lah~iy--aaADiflmPS~~EP~GLvqLEAMa~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~t 976 (1036)
T PLN02316 899 HDRARLCLTYDEPLSHLIY--AGADFILVPSIFEPCGLTQLTAMRYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPN 976 (1036)
T ss_pred CCeEEEEecCCHHHHHHHH--HhCcEEEeCCcccCccHHHHHHHHcCCCeEEEcCCCcHhhccccccccccccccccCCc
Confidence 5577776555543 455 789999953 22358999999999988764422 22211 110011246
Q ss_pred eeecCCCCCCHHHHHHHHHHHhCC-hhHHHHHHHHHHH
Q psy16503 127 GVTLPYDQITEETVLVALRTVLGN-PSYKKRAEKVARL 163 (244)
Q Consensus 127 g~~l~~~~~~~~~l~~ai~~ll~~-~~y~~~a~~~s~~ 163 (244)
|...+.. +++.|..+|.+++.+ ...+..+.++++.
T Consensus 977 Gflf~~~--d~~aLa~AL~raL~~~~~~~~~~~~~~r~ 1012 (1036)
T PLN02316 977 GFSFDGA--DAAGVDYALNRAISAWYDGRDWFNSLCKR 1012 (1036)
T ss_pred eEEeCCC--CHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 8887654 588999999999865 2333443444433
No 141
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=92.47 E-value=1 Score=39.21 Aligned_cols=128 Identities=16% Similarity=0.198 Sum_probs=77.1
Q ss_pred CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCC-C------CCCCCCCEEEecc--CChh-hhhCCCCee
Q psy16503 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGE-N------MSGKIDKILLKSW--APQR-DILDHPNVK 84 (244)
Q Consensus 15 ~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~-~------~~~~~~nv~~~~~--~pq~-~lL~h~~~~ 84 (244)
++.|++..|+.......|.+...++++.+.+.+.++++..|+. + +.+..+++.+.+- +.+. .++ ..++
T Consensus 178 ~~~i~~~~~~s~~~k~Wp~e~~a~li~~l~~~~~~ivl~~G~~~e~~~~~~i~~~~~~~~l~g~~sL~elaali--~~a~ 255 (322)
T PRK10964 178 GPYLVFLHATTRDDKHWPEAHWRELIGLLAPSGLRIKLPWGAEHEEQRAKRLAEGFPYVEVLPKLSLEQVARVL--AGAK 255 (322)
T ss_pred CCeEEEEeCCCcccccCCHHHHHHHHHHHHHCCCeEEEeCCCHHHHHHHHHHHccCCcceecCCCCHHHHHHHH--HhCC
Confidence 4566655565555578999999999999876666776644431 1 1111223444433 3333 455 7899
Q ss_pred EEEecCChhhHHHHHHhCCcEEec--CCCc----chhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhC
Q psy16503 85 VFISHGGFLGTTEALYSGVPIIGI--PMFG----DQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLG 149 (244)
Q Consensus 85 l~IthgG~~s~~Eal~~gvP~i~v--P~~~----dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~ 149 (244)
++|+.- .|.++=|.+.|+|++++ |-.. ....|...+..- +. ...+++.+++.++++++|+
T Consensus 256 l~I~nD-SGp~HlA~A~g~p~valfGpt~p~~~~p~~~~~~~~~~~--~~--cm~~I~~e~V~~~~~~~l~ 321 (322)
T PRK10964 256 AVVSVD-TGLSHLTAALDRPNITLYGPTDPGLIGGYGKNQHACRSP--GK--SMADLSAETVFQKLETLIS 321 (322)
T ss_pred EEEecC-CcHHHHHHHhCCCEEEEECCCCcccccCCCCCceeecCC--Cc--ccccCCHHHHHHHHHHHhh
Confidence 999974 45788899999999998 3321 111111111000 11 1357788999999988763
No 142
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=92.42 E-value=3.4 Score=35.19 Aligned_cols=116 Identities=16% Similarity=0.189 Sum_probs=65.5
Q ss_pred CceEEEEcCCCCCCCCCCHHHHHHHHHH----HhcCCCeEEEEecCCC-----------CCCCCC---CEEEeccCChhh
Q psy16503 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRA----FEQIPQRVIWKWEGEN-----------MSGKID---KILLKSWAPQRD 76 (244)
Q Consensus 15 ~~vI~vs~Gs~~~~~~~~~~~~~~i~~a----l~~~~~~viw~~~~~~-----------~~~~~~---nv~~~~~~pq~~ 76 (244)
++.|-|--|+......+.++....+... +++.+-.|+...+... +...|. |-.=.++-|..+
T Consensus 161 rq~vAVlVGg~nk~f~~~~d~a~q~~~~l~k~l~~~g~~~lisfSRRTp~~~~s~l~~~l~s~~~i~w~~~d~g~NPY~~ 240 (329)
T COG3660 161 RQRVAVLVGGNNKAFVFQEDKAHQFASLLVKILENQGGSFLISFSRRTPDTVKSILKNNLNSSPGIVWNNEDTGYNPYID 240 (329)
T ss_pred CceEEEEecCCCCCCccCHHHHHHHHHHHHHHHHhCCceEEEEeecCCcHHHHHHHHhccccCceeEeCCCCCCCCchHH
Confidence 3555555555544445555555554443 4445567777766421 111110 111124458899
Q ss_pred hhCCCCeeEEEecCC-hhhHHHHHHhCCcEEec--CCC-cch-hhHHHHHHHcCceeecCC
Q psy16503 77 ILDHPNVKVFISHGG-FLGTTEALYSGVPIIGI--PMF-GDQ-KANIRVVEKAGFGVTLPY 132 (244)
Q Consensus 77 lL~h~~~~l~IthgG-~~s~~Eal~~gvP~i~v--P~~-~dQ-~~na~~~~~~G~g~~l~~ 132 (244)
.| ..+|.+|+-.. .+...||++.|+|+.+. |-+ .+- ..--+.+++.++++..+.
T Consensus 241 ~L--a~Adyii~TaDSinM~sEAasTgkPv~~~~~~~~~s~K~r~Fi~~L~eq~~AR~f~~ 299 (329)
T COG3660 241 ML--AAADYIISTADSINMCSEAASTGKPVFILEPPNFNSLKFRIFIEQLVEQKIARPFEG 299 (329)
T ss_pred HH--hhcceEEEecchhhhhHHHhccCCCeEEEecCCcchHHHHHHHHHHHHhhhccccCc
Confidence 99 77888887655 57889999999999776 333 121 123344555666665543
No 143
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.87 E-value=2.2 Score=37.14 Aligned_cols=98 Identities=22% Similarity=0.370 Sum_probs=60.0
Q ss_pred eccCChhhhhCCCCeeEEEecCChh---------------hHHHHHHhCCcEEecCCCcchhh--HHHHHHHc-Cceeec
Q psy16503 69 KSWAPQRDILDHPNVKVFISHGGFL---------------GTTEALYSGVPIIGIPMFGDQKA--NIRVVEKA-GFGVTL 130 (244)
Q Consensus 69 ~~~~pq~~lL~h~~~~l~IthgG~~---------------s~~Eal~~gvP~i~vP~~~dQ~~--na~~~~~~-G~g~~l 130 (244)
..|-|..|.+...+|.+..+.-..+ .+-.++=.|||+|.+|-.+-|+. .|++-.+. |..+.+
T Consensus 282 ~gWq~~ad~~~kdnc~l~lsqqsfadiLH~adaalgmAGTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltl 361 (412)
T COG4370 282 QGWQPLADRFGKDNCSLWLSQQSFADILHAADAALGMAGTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTL 361 (412)
T ss_pred cCcchhhhhhccCceEEEEeHHHHHHHHHHHHHHHHhccchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeee
Confidence 3455555555544555555443222 23335558999999999999876 45544444 777766
Q ss_pred CCCCCCHHHHHHHHHHHhCChhHHHHHHHHHHHHhCCC
Q psy16503 131 PYDQITEETVLVALRTVLGNPSYKKRAEKVARLFQDRP 168 (244)
Q Consensus 131 ~~~~~~~~~l~~ai~~ll~~~~y~~~a~~~s~~~~~~~ 168 (244)
-..+ ...-..+.++++.|+.+.+.++...+.--.+|
T Consensus 362 v~~~--aq~a~~~~q~ll~dp~r~~air~nGqrRiGqa 397 (412)
T COG4370 362 VRPE--AQAAAQAVQELLGDPQRLTAIRHNGQRRIGQA 397 (412)
T ss_pred cCCc--hhhHHHHHHHHhcChHHHHHHHhcchhhccCc
Confidence 5432 33344445559999999988886655444443
No 144
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=91.45 E-value=12 Score=34.64 Aligned_cols=98 Identities=13% Similarity=0.138 Sum_probs=62.8
Q ss_pred eccCChhhh---hCCCCeeEEEe---cCC-hhhHHHHHHhCCc----EEecCCCcchhhHHHHHHHcCceeecCCCCCCH
Q psy16503 69 KSWAPQRDI---LDHPNVKVFIS---HGG-FLGTTEALYSGVP----IIGIPMFGDQKANIRVVEKAGFGVTLPYDQITE 137 (244)
Q Consensus 69 ~~~~pq~~l---L~h~~~~l~It---hgG-~~s~~Eal~~gvP----~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~ 137 (244)
...+|+.++ + ..+|+|+. +-| ..++.||+++|+| +|+--..+-- ..+ +-|+.+++. +.
T Consensus 341 ~~~~~~~el~aly--~aaDv~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~----~~l---~~gllVnP~--d~ 409 (456)
T TIGR02400 341 NRSYDREELMALY--RAADVGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAA----QEL---NGALLVNPY--DI 409 (456)
T ss_pred cCCCCHHHHHHHH--HhCcEEEECccccccCccHHHHHHhcCCCCceEEEeCCCCCh----HHh---CCcEEECCC--CH
Confidence 345666643 5 67888886 335 4688899999999 7766554422 112 247777665 58
Q ss_pred HHHHHHHHHHhCCh--hHHHHHHHHHHHHhCCCCChHHHHHHHHHHHH
Q psy16503 138 ETVLVALRTVLGNP--SYKKRAEKVARLFQDRPMPPLDTAIYWIEHVI 183 (244)
Q Consensus 138 ~~l~~ai~~ll~~~--~y~~~a~~~s~~~~~~~~~~~~~a~~~ie~~~ 183 (244)
+++.++|.++++++ ..+++++++.+.+.. . .+..|.+..+
T Consensus 410 ~~lA~aI~~aL~~~~~er~~r~~~~~~~v~~--~----~~~~W~~~~l 451 (456)
T TIGR02400 410 DGMADAIARALTMPLEEREERHRAMMDKLRK--N----DVQRWREDFL 451 (456)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh--C----CHHHHHHHHH
Confidence 99999999999753 344455555555443 2 3356666544
No 145
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=91.44 E-value=3.7 Score=34.15 Aligned_cols=89 Identities=27% Similarity=0.451 Sum_probs=56.2
Q ss_pred CCCEEEeccCCh---hhhhCCCCeeEEEec---CCh-hhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCC
Q psy16503 63 IDKILLKSWAPQ---RDILDHPNVKVFISH---GGF-LGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQI 135 (244)
Q Consensus 63 ~~nv~~~~~~pq---~~lL~h~~~~l~Ith---gG~-~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~ 135 (244)
.+++.+..++|. ..++ ..+++++.- .|. .++.||+++|+|++..+..+ ....+.+.+.|......
T Consensus 256 ~~~v~~~g~~~~~~~~~~~--~~~~~~v~ps~~e~~~~~~~Ea~a~g~pvi~~~~~~----~~e~~~~~~~g~~~~~~-- 327 (381)
T COG0438 256 EDNVKFLGYVPDEELAELL--ASADVFVLPSLSEGFGLVLLEAMAAGTPVIASDVGG----IPEVVEDGETGLLVPPG-- 327 (381)
T ss_pred CCcEEEecccCHHHHHHHH--HhCCEEEeccccccchHHHHHHHhcCCcEEECCCCC----hHHHhcCCCceEecCCC--
Confidence 467888888882 2345 445666654 243 44699999999998875531 22222333246533322
Q ss_pred CHHHHHHHHHHHhCChhHHHHHHH
Q psy16503 136 TEETVLVALRTVLGNPSYKKRAEK 159 (244)
Q Consensus 136 ~~~~l~~ai~~ll~~~~y~~~a~~ 159 (244)
+.+++.+++..++++++.++...+
T Consensus 328 ~~~~~~~~i~~~~~~~~~~~~~~~ 351 (381)
T COG0438 328 DVEELADALEQLLEDPELREELGE 351 (381)
T ss_pred CHHHHHHHHHHHhcCHHHHHHHHH
Confidence 689999999999988744444443
No 146
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=90.44 E-value=3.7 Score=36.22 Aligned_cols=91 Identities=14% Similarity=0.135 Sum_probs=63.3
Q ss_pred CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCC--C------CC---CCCCEEEecc--CChh-hhhCC
Q psy16503 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGEN--M------SG---KIDKILLKSW--APQR-DILDH 80 (244)
Q Consensus 15 ~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~--~------~~---~~~nv~~~~~--~pq~-~lL~h 80 (244)
++.|.+..|+.......|.+...++++.+.+.+.++++..+.++ . .. .+..+.+.+- +.+. .++
T Consensus 183 ~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali-- 260 (352)
T PRK10422 183 QNYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPELGALI-- 260 (352)
T ss_pred CCeEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHH--
Confidence 57898999998777889999999999998776778777655321 1 11 1122333333 3333 566
Q ss_pred CCeeEEEecCChhhHHHHHHhCCcEEec
Q psy16503 81 PNVKVFISHGGFLGTTEALYSGVPIIGI 108 (244)
Q Consensus 81 ~~~~l~IthgG~~s~~Eal~~gvP~i~v 108 (244)
..++++|+.= .|-++=|.+.|+|++++
T Consensus 261 ~~a~l~v~nD-SGp~HlAaA~g~P~v~l 287 (352)
T PRK10422 261 DHAQLFIGVD-SAPAHIAAAVNTPLICL 287 (352)
T ss_pred HhCCEEEecC-CHHHHHHHHcCCCEEEE
Confidence 7899999973 45678888999999987
No 147
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=90.27 E-value=3 Score=36.07 Aligned_cols=96 Identities=16% Similarity=0.177 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecCCCCCCCCCCEEEeccCChhhhhCCCCeeEEEecCChhhHHHHHH----hCCcEEec
Q psy16503 33 SDKRKAFLRAFEQIPQRVIWKWEGENMSGKIDKILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALY----SGVPIIGI 108 (244)
Q Consensus 33 ~~~~~~i~~al~~~~~~viw~~~~~~~~~~~~nv~~~~~~pq~~lL~h~~~~l~IthgG~~s~~Eal~----~gvP~i~v 108 (244)
.+.++.+.+.+++.+..+.+......... ..+. +..+..++- ..++++|+-||=||+.+++. .++|++++
T Consensus 20 ~e~~~~i~~~L~~~g~~v~v~~~~~~~~~-~~~~---~~~~~~~~~--~~~d~vi~~GGDGt~l~~~~~~~~~~~pilGI 93 (291)
T PRK02155 20 AEPLESLAAFLAKRGFEVVFEADTARNIG-LTGY---PALTPEEIG--ARADLAVVLGGDGTMLGIGRQLAPYGVPLIGI 93 (291)
T ss_pred HHHHHHHHHHHHHCCCEEEEecchhhhcC-cccc---cccChhHhc--cCCCEEEEECCcHHHHHHHHHhcCCCCCEEEE
Confidence 45677788878777777666432111000 0010 001223332 46899999999999999977 37898888
Q ss_pred CCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCC
Q psy16503 109 PMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGN 150 (244)
Q Consensus 109 P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~ 150 (244)
..- .+|.. .+.+.+++.+++++++++
T Consensus 94 n~G-------------~lGFL---~~~~~~~~~~~l~~~~~g 119 (291)
T PRK02155 94 NHG-------------RLGFI---TDIPLDDMQETLPPMLAG 119 (291)
T ss_pred cCC-------------Ccccc---ccCCHHHHHHHHHHHHcC
Confidence 431 12332 245678899999998854
No 148
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=90.11 E-value=1.4 Score=37.50 Aligned_cols=91 Identities=13% Similarity=0.150 Sum_probs=61.9
Q ss_pred CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCCC------CC-C-CCC-EEEecc--CC-hhhhhCCCC
Q psy16503 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENM------SG-K-IDK-ILLKSW--AP-QRDILDHPN 82 (244)
Q Consensus 15 ~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~~------~~-~-~~n-v~~~~~--~p-q~~lL~h~~ 82 (244)
++.|.+..|+.......+.+...++++.+...+.++++..+.++. .. . ..+ +.+.+- +. ...++ .+
T Consensus 121 ~~~i~i~~~~~~~~k~w~~~~~~~l~~~l~~~~~~ivl~g~~~e~~~~~~i~~~~~~~~~~~~~~~~~l~e~~~li--~~ 198 (279)
T cd03789 121 KPVVVLPPGASGPAKRWPAERFAALADRLLARGARVVLTGGPAERELAEEIAAALGGPRVVNLAGKTSLRELAALL--AR 198 (279)
T ss_pred CCEEEECCCCCCccccCCHHHHHHHHHHHHHCCCEEEEEechhhHHHHHHHHHhcCCCccccCcCCCCHHHHHHHH--Hh
Confidence 568888998887777889999999999888767777765443221 11 1 122 222222 22 23566 67
Q ss_pred eeEEEecCChhhHHHHHHhCCcEEec
Q psy16503 83 VKVFISHGGFLGTTEALYSGVPIIGI 108 (244)
Q Consensus 83 ~~l~IthgG~~s~~Eal~~gvP~i~v 108 (244)
++++|+.-. |.++=|.+.|+|++++
T Consensus 199 ~~l~I~~Ds-g~~HlA~a~~~p~i~l 223 (279)
T cd03789 199 ADLVVTNDS-GPMHLAAALGTPTVAL 223 (279)
T ss_pred CCEEEeeCC-HHHHHHHHcCCCEEEE
Confidence 999999843 5677778999999987
No 149
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=89.83 E-value=0.73 Score=38.25 Aligned_cols=92 Identities=16% Similarity=0.206 Sum_probs=57.3
Q ss_pred CCceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCC--------C-CCCC-CCEEEeccCC--h-hhhhCC
Q psy16503 14 VNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGEN--------M-SGKI-DKILLKSWAP--Q-RDILDH 80 (244)
Q Consensus 14 ~~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~--------~-~~~~-~nv~~~~~~p--q-~~lL~h 80 (244)
+++.|.+..|+......+|.+...++++.+.+.+++++...+.++ + ...+ +.+.+.+-.+ + ..++
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~ali-- 181 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEEQEKEIADQIAAGLQNPVINLAGKTSLRELAALI-- 181 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHHHHHHHHHHHHTTHTTTTEEETTTS-HHHHHHHH--
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchHHHHHHHHHHHHhcccceEeecCCCCHHHHHHHH--
Confidence 468899999998877889999999999999888777766555422 1 1122 1344444333 3 2566
Q ss_pred CCeeEEEecCChhhHHHHHHhCCcEEec
Q psy16503 81 PNVKVFISHGGFLGTTEALYSGVPIIGI 108 (244)
Q Consensus 81 ~~~~l~IthgG~~s~~Eal~~gvP~i~v 108 (244)
..++++|+.-+ |.++=|.+.|+|+|++
T Consensus 182 ~~a~~~I~~Dt-g~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 182 SRADLVIGNDT-GPMHLAAALGTPTVAL 208 (247)
T ss_dssp HTSSEEEEESS-HHHHHHHHTT--EEEE
T ss_pred hcCCEEEecCC-hHHHHHHHHhCCEEEE
Confidence 78999999743 5788899999999998
No 150
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=89.34 E-value=6.6 Score=31.36 Aligned_cols=104 Identities=15% Similarity=0.128 Sum_probs=58.4
Q ss_pred CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecC----CCCCC-CCCCEEEeccCC-hhhhhCCCCeeEEEe
Q psy16503 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEG----ENMSG-KIDKILLKSWAP-QRDILDHPNVKVFIS 88 (244)
Q Consensus 15 ~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~----~~~~~-~~~nv~~~~~~p-q~~lL~h~~~~l~It 88 (244)
++..+|+.|+. .-.+..+.++..+.+-.++=..+. .+..+ ..+..+.++.+. ...+|. ..+|+||.
T Consensus 31 ~g~~lV~GGg~-------~GlM~a~a~ga~~~gG~viGi~p~~l~~~~~~~~~~~~~i~~~~~~~Rk~~m~-~~sda~I~ 102 (178)
T TIGR00730 31 QGWGLVYGGGR-------VGLMGAIADAAMENGGTAVGVNPSGLFSGEVVHQNLTELIEVNGMHERKAMMA-ELADAFIA 102 (178)
T ss_pred CCCEEEECCCh-------HhHHHHHHHHHHhcCCeEEEecchhhhhhhccCCCCCceEEECCHHHHHHHHH-HhCCEEEE
Confidence 46788888764 134566666665555444433321 11111 122344445444 445555 56777777
Q ss_pred -cCChhhHHHHHH---------hCCcEEecC---CCcchhhHHHHHHHcCc
Q psy16503 89 -HGGFLGTTEALY---------SGVPIIGIP---MFGDQKANIRVVEKAGF 126 (244)
Q Consensus 89 -hgG~~s~~Eal~---------~gvP~i~vP---~~~dQ~~na~~~~~~G~ 126 (244)
-||.||+-|.+. +.+|++++- ++.+-....+.+.+.|.
T Consensus 103 lPGG~GTL~El~e~~~~~qlg~~~kPiil~n~~g~~~~l~~~l~~~~~~gf 153 (178)
T TIGR00730 103 MPGGFGTLEELFEVLTWAQLGIHQKPIILFNVNGHFDGLVEWLKYSIQEGF 153 (178)
T ss_pred cCCCcchHHHHHHHHHHHHcCCCCCCEEEECCcchHHHHHHHHHHHHHCCC
Confidence 688999999854 499998873 23333333455666664
No 151
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=88.95 E-value=6.5 Score=34.45 Aligned_cols=92 Identities=17% Similarity=0.204 Sum_probs=63.7
Q ss_pred CCceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCC--C------CC-CCC-CC-EEEecc--CChh-hhhC
Q psy16503 14 VNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGE--N------MS-GKI-DK-ILLKSW--APQR-DILD 79 (244)
Q Consensus 14 ~~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~--~------~~-~~~-~n-v~~~~~--~pq~-~lL~ 79 (244)
+++.|.+..|+.......|.+...++++.+...+.++++..+.+ + .. ..+ ++ +.+.+- +++. .++
T Consensus 180 ~~~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~~~~ivl~g~p~~~e~~~~~~i~~~~~~~~~~~l~g~~sL~el~ali- 258 (344)
T TIGR02201 180 GQNYIVIQPTSRWFFKCWDNDRFSALIDALHARGYEVVLTSGPDKDELAMVNEIAQGCQTPRVTSLAGKLTLPQLAALI- 258 (344)
T ss_pred CCCEEEEeCCCCccccCCCHHHHHHHHHHHHhCCCeEEEecCCCHHHHHHHHHHHhhCCCCcccccCCCCCHHHHHHHH-
Confidence 35788899998877788899999999988876667777764422 1 11 111 12 222332 3333 456
Q ss_pred CCCeeEEEecCChhhHHHHHHhCCcEEec
Q psy16503 80 HPNVKVFISHGGFLGTTEALYSGVPIIGI 108 (244)
Q Consensus 80 h~~~~l~IthgG~~s~~Eal~~gvP~i~v 108 (244)
..++++|+. ..|-++=|.+.|+|+|++
T Consensus 259 -~~a~l~Vs~-DSGp~HlAaA~g~p~v~L 285 (344)
T TIGR02201 259 -DHARLFIGV-DSVPMHMAAALGTPLVAL 285 (344)
T ss_pred -HhCCEEEec-CCHHHHHHHHcCCCEEEE
Confidence 789999998 566788899999999987
No 152
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=88.53 E-value=1.7 Score=38.18 Aligned_cols=91 Identities=13% Similarity=0.127 Sum_probs=63.0
Q ss_pred CceEEEEcC-CCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCC------CCC-CCCCEEEecc--CChh-hhhCCCCe
Q psy16503 15 NGVIYFSMG-SIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGEN------MSG-KIDKILLKSW--APQR-DILDHPNV 83 (244)
Q Consensus 15 ~~vI~vs~G-s~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~------~~~-~~~nv~~~~~--~pq~-~lL~h~~~ 83 (244)
++.|++.-| |.......|.+...++++.+.+.+.+|++..+.++ +.. .+..+.+.+- +.+. +++ ..+
T Consensus 175 ~~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~~~~Vvl~g~~~e~e~~~~i~~~~~~~~~l~~k~sL~e~~~li--~~a 252 (334)
T COG0859 175 RPYIVINPGASRGSAKRWPLEHYAELAELLIAKGYQVVLFGGPDEEERAEEIAKGLPNAVILAGKTSLEELAALI--AGA 252 (334)
T ss_pred CCeEEEeccccccccCCCCHHHHHHHHHHHHHCCCEEEEecChHHHHHHHHHHHhcCCccccCCCCCHHHHHHHH--hcC
Confidence 589999999 55567889999999999999888877776555422 111 2222223333 3343 455 689
Q ss_pred eEEEecCChhhHHHHHHhCCcEEec
Q psy16503 84 KVFISHGGFLGTTEALYSGVPIIGI 108 (244)
Q Consensus 84 ~l~IthgG~~s~~Eal~~gvP~i~v 108 (244)
+++|+. ..|-++=|.+.|+|+|++
T Consensus 253 ~l~I~~-DSg~~HlAaA~~~P~I~i 276 (334)
T COG0859 253 DLVIGN-DSGPMHLAAALGTPTIAL 276 (334)
T ss_pred CEEEcc-CChHHHHHHHcCCCEEEE
Confidence 999986 344677788899999998
No 153
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=87.95 E-value=7.9 Score=34.32 Aligned_cols=128 Identities=15% Similarity=0.138 Sum_probs=83.1
Q ss_pred CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEE--ecCCC------C-----CCCC-CCEEE-eccCChh---h
Q psy16503 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWK--WEGEN------M-----SGKI-DKILL-KSWAPQR---D 76 (244)
Q Consensus 15 ~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~--~~~~~------~-----~~~~-~nv~~-~~~~pq~---~ 76 (244)
++.+.|-.|.+.-.++-..+.++.+.+.+. ...+|+.- +++++ . .-.+ +|+.+ .+++|.. +
T Consensus 183 ~~~ltILvGNSgd~sNnHieaL~~L~~~~~-~~~kIivPLsYg~~n~~Yi~~V~~~~~~lF~~~~~~iL~e~mpf~eYl~ 261 (360)
T PF07429_consen 183 KGKLTILVGNSGDPSNNHIEALEALKQQFG-DDVKIIVPLSYGANNQAYIQQVIQAGKELFGAENFQILTEFMPFDEYLA 261 (360)
T ss_pred CCceEEEEcCCCCCCccHHHHHHHHHHhcC-CCeEEEEECCCCCchHHHHHHHHHHHHHhcCccceeEhhhhCCHHHHHH
Confidence 456777777776544444444444443321 12366654 33211 0 0123 47754 5688855 5
Q ss_pred hhCCCCeeEEEe----cCChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhC
Q psy16503 77 ILDHPNVKVFIS----HGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLG 149 (244)
Q Consensus 77 lL~h~~~~l~It----hgG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~ 149 (244)
+| .+|++.|- .=|.|+++-.++.|+|+.+- .+.---+.+.+.|+-+....++++...+.++=+++..
T Consensus 262 lL--~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~----~~np~~~~l~~~~ipVlf~~d~L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 262 LL--SRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS----RDNPFWQDLKEQGIPVLFYGDELDEALVREAQRQLAN 332 (360)
T ss_pred HH--HhCCEEEEeechhhhHhHHHHHHHcCCeEEEe----cCChHHHHHHhCCCeEEeccccCCHHHHHHHHHHHhh
Confidence 77 67877665 36899999999999999875 2222346678889988888899999999998887763
No 154
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=87.90 E-value=4.9 Score=34.73 Aligned_cols=94 Identities=11% Similarity=0.063 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecCCCCCCCCCCEEEeccCChhhhhCCCCeeEEEecCChhhHHHHHH----hCCcEEec
Q psy16503 33 SDKRKAFLRAFEQIPQRVIWKWEGENMSGKIDKILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALY----SGVPIIGI 108 (244)
Q Consensus 33 ~~~~~~i~~al~~~~~~viw~~~~~~~~~~~~nv~~~~~~pq~~lL~h~~~~l~IthgG~~s~~Eal~----~gvP~i~v 108 (244)
.+..+.+.+.+.+.+..+.+.-........+. .+..++. ..+|++|+-||=||+..++. .++|++++
T Consensus 24 ~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~-------~~~~~~~--~~~Dlvi~iGGDGT~L~aa~~~~~~~~PilGI 94 (287)
T PRK14077 24 DKEILKLQKILSIYKVEILLEKESAEILDLPG-------YGLDELF--KISDFLISLGGDGTLISLCRKAAEYDKFVLGI 94 (287)
T ss_pred HHHHHHHHHHHHHCCCEEEEecchhhhhcccc-------cchhhcc--cCCCEEEEECCCHHHHHHHHHhcCCCCcEEEE
Confidence 56667777777666666555321111001110 1222332 46899999999999987765 47899988
Q ss_pred CCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCCh
Q psy16503 109 PMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNP 151 (244)
Q Consensus 109 P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~ 151 (244)
-.- .+|.. .+++.+++.++++++++++
T Consensus 95 N~G-------------~lGFL---t~~~~~~~~~~l~~i~~g~ 121 (287)
T PRK14077 95 HAG-------------HLGFL---TDITVDEAEKFFQAFFQGE 121 (287)
T ss_pred eCC-------------CcccC---CcCCHHHHHHHHHHHHcCC
Confidence 431 12322 3456788999999988653
No 155
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=87.74 E-value=23 Score=33.04 Aligned_cols=154 Identities=11% Similarity=0.069 Sum_probs=91.2
Q ss_pred CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCC---e-EEEEecCCC--------------------C------CCCCC
Q psy16503 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQ---R-VIWKWEGEN--------------------M------SGKID 64 (244)
Q Consensus 15 ~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~---~-viw~~~~~~--------------------~------~~~~~ 64 (244)
+..|+++.|-....+.+ ...+.++-..|++-|. + ++.+++... . .+..+
T Consensus 284 ~~kiIl~VDRLDy~KGI-~~kl~Afe~~L~~~Pe~~gkv~Lvqi~~psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~p 362 (487)
T TIGR02398 284 GVKLILSAERVDYTKGI-LEKLNAYERLLERRPELLGKVTLVTACVPAASGMTIYDELQGQIEQAVGRINGRFARIGWTP 362 (487)
T ss_pred CceEEEEecccccccCH-HHHHHHHHHHHHhCccccCceEEEEEeCCCcccchHHHHHHHHHHHHHHHHhhccCCCCCcc
Confidence 35677777777554332 4556666666666664 1 233332210 0 01123
Q ss_pred CEEEeccCChhhhhC-CCCeeEEEe---cCChhhH-HHHHHhCC----cEEecCCCcchhhHHHHHHHcCceeecCCCCC
Q psy16503 65 KILLKSWAPQRDILD-HPNVKVFIS---HGGFLGT-TEALYSGV----PIIGIPMFGDQKANIRVVEKAGFGVTLPYDQI 135 (244)
Q Consensus 65 nv~~~~~~pq~~lL~-h~~~~l~It---hgG~~s~-~Eal~~gv----P~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~ 135 (244)
-+++...+|..++.+ -..+|+++. .-|+|-+ .|.++++. |+|+--+.+ | .+...-|+.+++.
T Consensus 363 v~~~~~~v~~~el~alYr~ADV~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaG-----a--a~~l~~AllVNP~-- 433 (487)
T TIGR02398 363 LQFFTRSLPYEEVSAWFAMADVMWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAG-----A--AVELKGALLTNPY-- 433 (487)
T ss_pred EEEEcCCCCHHHHHHHHHhCCEEEECccccccCcchhhHHhhhcCCCCCEEEecccc-----c--hhhcCCCEEECCC--
Confidence 356667788775432 156777665 5688755 49999988 555554432 1 1334457888765
Q ss_pred CHHHHHHHHHHHhCChh--HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q psy16503 136 TEETVLVALRTVLGNPS--YKKRAEKVARLFQDRPMPPLDTAIYWIEHVIR 184 (244)
Q Consensus 136 ~~~~l~~ai~~ll~~~~--y~~~a~~~s~~~~~~~~~~~~~a~~~ie~~~~ 184 (244)
+.+++.++|.+.|+.+. -+++++++.+.+.. ..+..|.+..+.
T Consensus 434 d~~~~A~ai~~AL~m~~~Er~~R~~~l~~~v~~------~d~~~W~~~fl~ 478 (487)
T TIGR02398 434 DPVRMDETIYVALAMPKAEQQARMREMFDAVNY------YDVQRWADEFLA 478 (487)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh------CCHHHHHHHHHH
Confidence 58999999999998753 44555555555544 245678887664
No 156
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=87.58 E-value=7.8 Score=30.31 Aligned_cols=94 Identities=19% Similarity=0.195 Sum_probs=51.5
Q ss_pred HHHHHhcCCCceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCC-CCCC-CCCEEEecc-CChhhhhCCCC
Q psy16503 6 IKKFLDESVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGEN-MSGK-IDKILLKSW-APQRDILDHPN 82 (244)
Q Consensus 6 l~~~l~~~~~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~-~~~~-~~nv~~~~~-~pq~~lL~h~~ 82 (244)
+-++|.+ ++..+++ |+.. -......++..+.+-.++=..+... ..+. .......++ .+...++. ..
T Consensus 23 lg~~La~--~g~~lv~-Gg~~-------GlM~a~a~ga~~~gg~viGVlp~~l~~~~~~~~~~i~~~~~~~Rk~~m~-~~ 91 (159)
T TIGR00725 23 LGKELAK--KGHILIN-GGRT-------GVMEAVSKGAREAGGLVVGILPDEDFAGNPYLTIKVKTGMNFARNFILV-RS 91 (159)
T ss_pred HHHHHHH--CCCEEEc-CCch-------hHHHHHHHHHHHCCCeEEEECChhhccCCCCceEEEECCCcchHHHHHH-HH
Confidence 3445543 3577777 4441 3345555555444444443344211 1111 112233444 55666666 56
Q ss_pred eeEEEe-cCChhhHHH---HHHhCCcEEecCC
Q psy16503 83 VKVFIS-HGGFLGTTE---ALYSGVPIIGIPM 110 (244)
Q Consensus 83 ~~l~It-hgG~~s~~E---al~~gvP~i~vP~ 110 (244)
+|+||. -||.||+.| ++.+++|+++++.
T Consensus 92 sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~ 123 (159)
T TIGR00725 92 ADVVVSVGGGYGTAIEILGAYALGGPVVVLRG 123 (159)
T ss_pred CCEEEEcCCchhHHHHHHHHHHcCCCEEEEEC
Confidence 666666 677888766 4779999999875
No 157
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=87.32 E-value=8.3 Score=37.74 Aligned_cols=95 Identities=13% Similarity=0.150 Sum_probs=55.1
Q ss_pred EEEeccCChhhhhC-CCCeeEEEec---CC-hhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHH
Q psy16503 66 ILLKSWAPQRDILD-HPNVKVFISH---GG-FLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETV 140 (244)
Q Consensus 66 v~~~~~~pq~~lL~-h~~~~l~Ith---gG-~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l 140 (244)
+++..++++.++.. -..+|+|+.- -| ..++.||+++|+|-.++|+..+--.-+..+ .-|+.+++. +.+++
T Consensus 344 ~~~~~~~~~~~l~~ly~~aDv~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~~l---~~~llv~P~--d~~~l 418 (726)
T PRK14501 344 HYFYRSLPFEELVALYRAADVALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAAEL---AEALLVNPN--DIEGI 418 (726)
T ss_pred EEEeCCCCHHHHHHHHHhccEEEecccccccCcccceEEEEcCCCCceEEEecccchhHHh---CcCeEECCC--CHHHH
Confidence 34556778775321 1678888864 34 468899999977522222211111111111 127777765 58999
Q ss_pred HHHHHHHhCCh--hHHHHHHHHHHHHh
Q psy16503 141 LVALRTVLGNP--SYKKRAEKVARLFQ 165 (244)
Q Consensus 141 ~~ai~~ll~~~--~y~~~a~~~s~~~~ 165 (244)
.++|.++++++ +.++++.+..+.+.
T Consensus 419 a~ai~~~l~~~~~e~~~r~~~~~~~v~ 445 (726)
T PRK14501 419 AAAIKRALEMPEEEQRERMQAMQERLR 445 (726)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 99999999854 44445555444443
No 158
>KOG0853|consensus
Probab=87.13 E-value=0.49 Score=43.75 Aligned_cols=65 Identities=20% Similarity=0.213 Sum_probs=47.8
Q ss_pred hhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCChhHHHHHHHHH
Q psy16503 93 LGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSYKKRAEKVA 161 (244)
Q Consensus 93 ~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~~y~~~a~~~s 161 (244)
-++.||+++|.|+++.--.+ -+..++..--|..++++.-....+.+++.++..|+.++.++.+-.
T Consensus 380 iv~IEAMa~glPvvAt~~GG----P~EiV~~~~tG~l~dp~~e~~~~~a~~~~kl~~~p~l~~~~~~~G 444 (495)
T KOG0853|consen 380 IVPIEAMACGLPVVATNNGG----PAEIVVHGVTGLLIDPGQEAVAELADALLKLRRDPELWARMGKNG 444 (495)
T ss_pred ceeHHHHhcCCCEEEecCCC----ceEEEEcCCcceeeCCchHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 37899999999999983322 234445555688888743333479999999999999988877644
No 159
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=87.09 E-value=4.6 Score=38.33 Aligned_cols=81 Identities=11% Similarity=0.096 Sum_probs=48.3
Q ss_pred hhhhhCCCCeeEEEe----cCChhhHHHHHHhCCcEEecCCCc-chhhHHHHHHHc-CceeecCCC---C--CCHHHHHH
Q psy16503 74 QRDILDHPNVKVFIS----HGGFLGTTEALYSGVPIIGIPMFG-DQKANIRVVEKA-GFGVTLPYD---Q--ITEETVLV 142 (244)
Q Consensus 74 q~~lL~h~~~~l~It----hgG~~s~~Eal~~gvP~i~vP~~~-dQ~~na~~~~~~-G~g~~l~~~---~--~~~~~l~~ 142 (244)
..+++ ..|++++. =|-..++.||+++|+|+|....-+ ..... ..+... ..|+.+... + -+.++|.+
T Consensus 468 y~E~~--~g~dl~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~-E~v~~~~~~gi~V~~r~~~~~~e~v~~La~ 544 (590)
T cd03793 468 YEEFV--RGCHLGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFME-EHIEDPESYGIYIVDRRFKSPDESVQQLTQ 544 (590)
T ss_pred hHHHh--hhceEEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhH-HHhccCCCceEEEecCCccchHHHHHHHHH
Confidence 44566 78888887 243568999999999999986632 11111 111112 256665421 1 13577888
Q ss_pred HHHHHhCChhHHHHHH
Q psy16503 143 ALRTVLGNPSYKKRAE 158 (244)
Q Consensus 143 ai~~ll~~~~y~~~a~ 158 (244)
+|.++++. +.++++.
T Consensus 545 ~m~~~~~~-~~r~~~~ 559 (590)
T cd03793 545 YMYEFCQL-SRRQRII 559 (590)
T ss_pred HHHHHhCC-cHHHHHH
Confidence 88888844 4444333
No 160
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=86.43 E-value=1.6 Score=37.31 Aligned_cols=53 Identities=19% Similarity=0.126 Sum_probs=39.6
Q ss_pred CeeEEEecCChhhHHHHHH------hCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCC
Q psy16503 82 NVKVFISHGGFLGTTEALY------SGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGN 150 (244)
Q Consensus 82 ~~~l~IthgG~~s~~Eal~------~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~ 150 (244)
.+|++|+-||=||+..|+. .++|++++..- .+|.. .+.+.+++.+++++++++
T Consensus 35 ~~Dlvi~iGGDGT~L~a~~~~~~~~~~iPilGIN~G-------------~lGFL---~~~~~~~~~~~l~~i~~g 93 (265)
T PRK04885 35 NPDIVISVGGDGTLLSAFHRYENQLDKVRFVGVHTG-------------HLGFY---TDWRPFEVDKLVIALAKD 93 (265)
T ss_pred CCCEEEEECCcHHHHHHHHHhcccCCCCeEEEEeCC-------------Cceec---ccCCHHHHHHHHHHHHcC
Confidence 5789999999999999976 48899998531 12332 345678888888888865
No 161
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=86.26 E-value=6.4 Score=34.30 Aligned_cols=91 Identities=12% Similarity=0.138 Sum_probs=61.0
Q ss_pred CceEEEEcCCCC-CCCCCCHHHHHHHHHHHhcCCCeEEEEecCCCCC-------CCCCCEE-Eecc--CChh-hhhCCCC
Q psy16503 15 NGVIYFSMGSII-QGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMS-------GKIDKIL-LKSW--APQR-DILDHPN 82 (244)
Q Consensus 15 ~~vI~vs~Gs~~-~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~~~-------~~~~nv~-~~~~--~pq~-~lL~h~~ 82 (244)
++.|.+.-|+.. .....|.+...++++.+.+.+.+++..-+.++.. ..+.++. +.+- +.+. .++ .+
T Consensus 174 ~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~~~~ivl~G~~~e~~~~~~i~~~~~~~~~~l~g~~sL~el~ali--~~ 251 (334)
T TIGR02195 174 RPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQGYQVVLFGSAKDHPAGNEIEALLPGELRNLAGETSLDEAVDLI--AL 251 (334)
T ss_pred CCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHCCCEEEEEEChhhHHHHHHHHHhCCcccccCCCCCCHHHHHHHH--Hh
Confidence 578999988863 5678999999999998876566766654432211 1222222 2222 2333 466 78
Q ss_pred eeEEEecCChhhHHHHHHhCCcEEec
Q psy16503 83 VKVFISHGGFLGTTEALYSGVPIIGI 108 (244)
Q Consensus 83 ~~l~IthgG~~s~~Eal~~gvP~i~v 108 (244)
++++|+. ..|-++=|.+.|+|+|++
T Consensus 252 a~l~I~~-DSGp~HlAaA~~~P~i~l 276 (334)
T TIGR02195 252 AKAVVTN-DSGLMHVAAALNRPLVAL 276 (334)
T ss_pred CCEEEee-CCHHHHHHHHcCCCEEEE
Confidence 9999997 345688889999999987
No 162
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=86.08 E-value=7.9 Score=34.03 Aligned_cols=92 Identities=12% Similarity=0.070 Sum_probs=60.7
Q ss_pred CCceEEEEcCCCC-CCCCCCHHHHHHHHHHHhcCCCeEEEEecCCCC-------CCCC----CC-EEEeccC--Chh-hh
Q psy16503 14 VNGVIYFSMGSII-QGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENM-------SGKI----DK-ILLKSWA--PQR-DI 77 (244)
Q Consensus 14 ~~~vI~vs~Gs~~-~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~~-------~~~~----~n-v~~~~~~--pq~-~l 77 (244)
+++.|.+..|+.. .....|.+...++++.+.+.+.+++..-+.++. ...+ .+ +.+.+-. .+. .+
T Consensus 179 ~~~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~~~~vvl~Gg~~e~~~~~~i~~~~~~~~~~~~~~l~g~~sL~el~al 258 (348)
T PRK10916 179 ERPIIGFCPGAEFGPAKRWPHYHYAELAQQLIDEGYQVVLFGSAKDHEAGNEILAALNTEQQAWCRNLAGETQLEQAVIL 258 (348)
T ss_pred CCCEEEEeCCCCCccccCCCHHHHHHHHHHHHHCCCeEEEEeCHHhHHHHHHHHHhcccccccceeeccCCCCHHHHHHH
Confidence 3578999999863 567899999999998887556676654332211 0111 11 2233322 233 46
Q ss_pred hCCCCeeEEEecCChhhHHHHHHhCCcEEec
Q psy16503 78 LDHPNVKVFISHGGFLGTTEALYSGVPIIGI 108 (244)
Q Consensus 78 L~h~~~~l~IthgG~~s~~Eal~~gvP~i~v 108 (244)
+ .+++++|+. ..|-++=|.+.|+|++++
T Consensus 259 i--~~a~l~I~n-DTGp~HlAaA~g~P~val 286 (348)
T PRK10916 259 I--AACKAIVTN-DSGLMHVAAALNRPLVAL 286 (348)
T ss_pred H--HhCCEEEec-CChHHHHHHHhCCCEEEE
Confidence 6 789999996 345688899999999987
No 163
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=84.19 E-value=2.4 Score=36.97 Aligned_cols=101 Identities=15% Similarity=0.110 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecCCCCCCCCC--CEEE-ec-c-CChhhhhCCCCeeEEEecCChhhHHHHHHh----CC
Q psy16503 33 SDKRKAFLRAFEQIPQRVIWKWEGENMSGKID--KILL-KS-W-APQRDILDHPNVKVFISHGGFLGTTEALYS----GV 103 (244)
Q Consensus 33 ~~~~~~i~~al~~~~~~viw~~~~~~~~~~~~--nv~~-~~-~-~pq~~lL~h~~~~l~IthgG~~s~~Eal~~----gv 103 (244)
.+..+.+.+.+.+.+..+.+..........+. +... .+ + .+..++. ..++++|+=||=||+..|+.. ++
T Consensus 16 ~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~Dlvi~iGGDGTlL~aar~~~~~~i 93 (305)
T PRK02649 16 VRTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFD--SSMKFAIVLGGDGTVLSAARQLAPCGI 93 (305)
T ss_pred HHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcc--cCcCEEEEEeCcHHHHHHHHHhcCCCC
Confidence 45566777777777766665322111101110 0000 00 0 1112222 468999999999999999774 78
Q ss_pred cEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCCh
Q psy16503 104 PIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNP 151 (244)
Q Consensus 104 P~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~ 151 (244)
|++++-.- .+|.. .+++.+++.++++++++++
T Consensus 94 PilGIN~G-------------~lGFL---t~~~~~~~~~~l~~l~~g~ 125 (305)
T PRK02649 94 PLLTINTG-------------HLGFL---TEAYLNQLDEAIDQVLAGQ 125 (305)
T ss_pred cEEEEeCC-------------CCccc---ccCCHHHHHHHHHHHHcCC
Confidence 99998431 12322 3456788999999998653
No 164
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=83.75 E-value=9.8 Score=33.18 Aligned_cols=101 Identities=11% Similarity=0.067 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecCC-CCCC-CCC---CEEEeccCChhhhhCCCCeeEEEecCChhhHHHHHH----hCC
Q psy16503 33 SDKRKAFLRAFEQIPQRVIWKWEGE-NMSG-KID---KILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALY----SGV 103 (244)
Q Consensus 33 ~~~~~~i~~al~~~~~~viw~~~~~-~~~~-~~~---nv~~~~~~pq~~lL~h~~~~l~IthgG~~s~~Eal~----~gv 103 (244)
.+..+.+.+.+.+.+..+.+.-... .+.. .+. .+- ...++...-+. ..++++|+=||=||+..|+. .++
T Consensus 20 ~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~D~vi~lGGDGT~L~aar~~~~~~~ 97 (306)
T PRK03372 20 TEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRA-MEVVDADPDAA-DGCELVLVLGGDGTILRAAELARAADV 97 (306)
T ss_pred HHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccc-cccccchhhcc-cCCCEEEEEcCCHHHHHHHHHhccCCC
Confidence 4566777777777676666532211 1110 000 000 11112211222 46899999999999999876 488
Q ss_pred cEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCCh
Q psy16503 104 PIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNP 151 (244)
Q Consensus 104 P~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~ 151 (244)
|++++..- .+|... +...+++.+++++++++.
T Consensus 98 PilGIN~G-------------~lGFL~---~~~~~~~~~~l~~i~~g~ 129 (306)
T PRK03372 98 PVLGVNLG-------------HVGFLA---EAEAEDLDEAVERVVDRD 129 (306)
T ss_pred cEEEEecC-------------CCceec---cCCHHHHHHHHHHHHcCC
Confidence 99999641 133333 446788999999998653
No 165
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=83.10 E-value=12 Score=32.51 Aligned_cols=95 Identities=18% Similarity=0.148 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecC-CCCCCCCCCEEEeccCChhhhhCCCCeeEEEecCChhhHHHHHH----hCCcEEe
Q psy16503 33 SDKRKAFLRAFEQIPQRVIWKWEG-ENMSGKIDKILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALY----SGVPIIG 107 (244)
Q Consensus 33 ~~~~~~i~~al~~~~~~viw~~~~-~~~~~~~~nv~~~~~~pq~~lL~h~~~~l~IthgG~~s~~Eal~----~gvP~i~ 107 (244)
.+..+.+.+.+.+.+..+.+.-.. ..++ +.+. ...+..++- ..++++|+=||=||+.+++. .++|+++
T Consensus 19 ~e~~~~i~~~L~~~giev~v~~~~~~~~~--~~~~---~~~~~~~~~--~~~d~vi~~GGDGt~l~~~~~~~~~~~Pvlg 91 (295)
T PRK01231 19 VETLRRLKDFLLDRGLEVILDEETAEVLP--GHGL---QTVSRKLLG--EVCDLVIVVGGDGSLLGAARALARHNVPVLG 91 (295)
T ss_pred HHHHHHHHHHHHHCCCEEEEecchhhhcC--cccc---cccchhhcc--cCCCEEEEEeCcHHHHHHHHHhcCCCCCEEE
Confidence 566777777777666665543211 1111 1111 122222222 46899999999999999975 3779998
Q ss_pred cCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCC
Q psy16503 108 IPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGN 150 (244)
Q Consensus 108 vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~ 150 (244)
+..- .+|.. .+.+.+++.+++++++++
T Consensus 92 in~G-------------~lGFl---~~~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 92 INRG-------------RLGFL---TDIRPDELEFKLAEVLDG 118 (295)
T ss_pred EeCC-------------ccccc---ccCCHHHHHHHHHHHHcC
Confidence 8651 13322 355789999999999864
No 166
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=82.39 E-value=12 Score=32.29 Aligned_cols=96 Identities=16% Similarity=0.115 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecCCCCCCCCCCEEEeccCChhhhhCCCCeeEEEecCChhhHHHHHH----hCCcEEec
Q psy16503 33 SDKRKAFLRAFEQIPQRVIWKWEGENMSGKIDKILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALY----SGVPIIGI 108 (244)
Q Consensus 33 ~~~~~~i~~al~~~~~~viw~~~~~~~~~~~~nv~~~~~~pq~~lL~h~~~~l~IthgG~~s~~Eal~----~gvP~i~v 108 (244)
.+..+.+.+.+.+.+..+.+.-......+ ..+ ....+..++. ..++++|+=||=||+..++. .++|++++
T Consensus 20 ~~~~~~i~~~l~~~g~~v~~~~~~~~~~~-~~~---~~~~~~~~~~--~~~d~vi~lGGDGT~L~aa~~~~~~~~Pilgi 93 (292)
T PRK03378 20 LTTHEMLYHWLTSKGYEVIVEQQIAHELQ-LKN---VKTGTLAEIG--QQADLAIVVGGDGNMLGAARVLARYDIKVIGI 93 (292)
T ss_pred HHHHHHHHHHHHHCCCEEEEecchhhhcC-ccc---ccccchhhcC--CCCCEEEEECCcHHHHHHHHHhcCCCCeEEEE
Confidence 45566676667666666554321110000 011 0011222332 46899999999999999975 37888888
Q ss_pred CCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCC
Q psy16503 109 PMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGN 150 (244)
Q Consensus 109 P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~ 150 (244)
-.-. +|.. .+++.+++.+++++++++
T Consensus 94 n~G~-------------lGFl---~~~~~~~~~~~l~~i~~g 119 (292)
T PRK03378 94 NRGN-------------LGFL---TDLDPDNALQQLSDVLEG 119 (292)
T ss_pred ECCC-------------CCcc---cccCHHHHHHHHHHHHcC
Confidence 4311 2332 244678899999999865
No 167
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=81.14 E-value=17 Score=31.90 Aligned_cols=154 Identities=16% Similarity=0.113 Sum_probs=79.8
Q ss_pred CceEEEEc---CCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCC--CCCCCCCCEEEec-cCChhhhhCCCCeeEEEe
Q psy16503 15 NGVIYFSM---GSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGE--NMSGKIDKILLKS-WAPQRDILDHPNVKVFIS 88 (244)
Q Consensus 15 ~~vI~vs~---Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~--~~~~~~~nv~~~~-~~pq~~lL~h~~~~l~It 88 (244)
.+.|+.=+ |+..-..+-..+.+..+++.|...+ .|+.-..+. +..+.-.|+.+-+ -++..++| -.++++|+
T Consensus 182 ~~yIVmRpe~~~A~y~~g~~~~~~~~~li~~l~k~g-iV~ipr~~~~~eife~~~n~i~pk~~vD~l~Ll--yya~lvig 258 (346)
T COG1817 182 ETYIVMRPEPWGAHYDNGDRGISVLPDLIKELKKYG-IVLIPREKEQAEIFEGYRNIIIPKKAVDTLSLL--YYATLVIG 258 (346)
T ss_pred CceEEEeeccccceeeccccchhhHHHHHHHHHhCc-EEEecCchhHHHHHhhhccccCCcccccHHHHH--hhhheeec
Confidence 35666544 3333222223445677777777666 223222211 1122233333322 34556788 57889999
Q ss_pred cCChhhHHHHHHhCCcEEec-CCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCChhHHHHHHHHHHHHhCC
Q psy16503 89 HGGFLGTTEALYSGVPIIGI-PMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSYKKRAEKVARLFQDR 167 (244)
Q Consensus 89 hgG~~s~~Eal~~gvP~i~v-P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~~y~~~a~~~s~~~~~~ 167 (244)
-||. .--||+..|+|.|.+ |- .--.--+.+.+.|.=..- .++.++.+...+.|.++..++. -..+
T Consensus 259 ~ggT-MarEaAlLGtpaIs~~pG--kll~vdk~lie~G~~~~s----~~~~~~~~~a~~~l~~~~~kK~-------~~~k 324 (346)
T COG1817 259 AGGT-MAREAALLGTPAISCYPG--KLLAVDKYLIEKGLLYHS----TDEIAIVEYAVRNLKYRRLKKT-------GVLK 324 (346)
T ss_pred CCch-HHHHHHHhCCceEEecCC--ccccccHHHHhcCceeec----CCHHHHHHHHHHHhhchhhccc-------cccc
Confidence 8775 567999999999987 32 122223455565554332 2344444444444444332211 1112
Q ss_pred CCChHHHHHHHHHHHHHc
Q psy16503 168 PMPPLDTAIYWIEHVIRH 185 (244)
Q Consensus 168 ~~~~~~~a~~~ie~~~~~ 185 (244)
..++.+..++.+|..++.
T Consensus 325 ~e~~~~~ii~~ve~~~e~ 342 (346)
T COG1817 325 LEDPTRLIIDVVEEMLET 342 (346)
T ss_pred cccHHHHHHHHHHHHhhh
Confidence 245677777777776654
No 168
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=80.76 E-value=3.8 Score=35.47 Aligned_cols=99 Identities=15% Similarity=0.185 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecCC-CCCCC---CCCEEEeccCChhhhhCCCCeeEEEecCChhhHHHHHH----hCCc
Q psy16503 33 SDKRKAFLRAFEQIPQRVIWKWEGE-NMSGK---IDKILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALY----SGVP 104 (244)
Q Consensus 33 ~~~~~~i~~al~~~~~~viw~~~~~-~~~~~---~~nv~~~~~~pq~~lL~h~~~~l~IthgG~~s~~Eal~----~gvP 104 (244)
.+..+.+.+.+.+.+..+++..... .+... .++. ....+..++. ..++++|+=||=||+..++. .++|
T Consensus 15 ~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~dlvi~lGGDGT~L~aa~~~~~~~~P 90 (292)
T PRK01911 15 SPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSY--DTFSDNEELD--GSADMVISIGGDGTFLRTATYVGNSNIP 90 (292)
T ss_pred HHHHHHHHHHHHHCCCEEEEecchhhhhcccccccccc--ccccchhhcc--cCCCEEEEECCcHHHHHHHHHhcCCCCC
Confidence 4556677777776676666532211 11000 0000 0010222332 46899999999999999887 3789
Q ss_pred EEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCCh
Q psy16503 105 IIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNP 151 (244)
Q Consensus 105 ~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~ 151 (244)
++++-.-. +|.. .+++.+++.+++++++++.
T Consensus 91 ilGIN~G~-------------lGFL---t~~~~~~~~~~l~~i~~g~ 121 (292)
T PRK01911 91 ILGINTGR-------------LGFL---ATVSKEEIEETIDELLNGD 121 (292)
T ss_pred EEEEecCC-------------CCcc---cccCHHHHHHHHHHHHcCC
Confidence 99984411 2322 3456788999999998653
No 169
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=78.71 E-value=3.9 Score=35.49 Aligned_cols=98 Identities=19% Similarity=0.134 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecCCC----CCCCCCCEEEeccCChhhhhCCCCeeEEEecCChhhHHHHHH----hCCc
Q psy16503 33 SDKRKAFLRAFEQIPQRVIWKWEGEN----MSGKIDKILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALY----SGVP 104 (244)
Q Consensus 33 ~~~~~~i~~al~~~~~~viw~~~~~~----~~~~~~nv~~~~~~pq~~lL~h~~~~l~IthgG~~s~~Eal~----~gvP 104 (244)
.+..+.+.+.|.+.+..++..-.... ......+. ...+..++. ..+|++|+=||=||+..|+. .++|
T Consensus 20 ~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~D~vi~lGGDGT~L~aa~~~~~~~~P 94 (296)
T PRK04539 20 QDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGC---HIVNKTELG--QYCDLVAVLGGDGTFLSVAREIAPRAVP 94 (296)
T ss_pred HHHHHHHHHHHHHCCCEEEEecccccccchhccccccc---cccchhhcC--cCCCEEEEECCcHHHHHHHHHhcccCCC
Confidence 45666777777776766655311100 00000111 112223332 46899999999999999975 4789
Q ss_pred EEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCCh
Q psy16503 105 IIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNP 151 (244)
Q Consensus 105 ~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~ 151 (244)
++++-.- .+|... +++.+++.++++++++++
T Consensus 95 ilGIN~G-------------~lGFL~---~~~~~~~~~~l~~i~~g~ 125 (296)
T PRK04539 95 IIGINQG-------------HLGFLT---QIPREYMTDKLLPVLEGK 125 (296)
T ss_pred EEEEecC-------------CCeEee---ccCHHHHHHHHHHHHcCC
Confidence 9998431 134443 456788999999998653
No 170
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=77.97 E-value=4.9 Score=34.46 Aligned_cols=57 Identities=19% Similarity=0.246 Sum_probs=40.5
Q ss_pred CCeeEEEecCChhhHHHHHH----hCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCChhH
Q psy16503 81 PNVKVFISHGGFLGTTEALY----SGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSY 153 (244)
Q Consensus 81 ~~~~l~IthgG~~s~~Eal~----~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~~y 153 (244)
..++++|+=||=||+..|+. .++|++++-.- .+|... +++.+++.+++.+++.+.+|
T Consensus 41 ~~~d~vi~iGGDGT~L~aa~~~~~~~~PilgIn~G-------------~lGFL~---~~~~~~~~~~l~~~~~~g~~ 101 (272)
T PRK02231 41 QRAQLAIVIGGDGNMLGRARVLAKYDIPLIGINRG-------------NLGFLT---DIDPKNAYEQLEACLERGEF 101 (272)
T ss_pred cCCCEEEEECCcHHHHHHHHHhccCCCcEEEEeCC-------------CCcccc---cCCHHHHHHHHHHHHhcCCc
Confidence 46899999999999998765 36899988431 134333 34677888888888863344
No 171
>PF15050 SCIMP: SCIMP protein
Probab=77.62 E-value=6.7 Score=29.05 Aligned_cols=28 Identities=18% Similarity=0.544 Sum_probs=15.9
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16503 198 LYWWQYILLDVIIALILLIAAMVWSIQW 225 (244)
Q Consensus 198 ~~~~~~~~lDv~~~~~~~~~~~~~~~~~ 225 (244)
|+||.-+.+=++++-++++.+.+-+|.+
T Consensus 1 M~WWr~nFWiiLAVaII~vS~~lglIly 28 (133)
T PF15050_consen 1 MSWWRDNFWIILAVAIILVSVVLGLILY 28 (133)
T ss_pred CchHHhchHHHHHHHHHHHHHHHHHHHH
Confidence 6788877776666554444444433333
No 172
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=77.62 E-value=5.4 Score=34.16 Aligned_cols=53 Identities=30% Similarity=0.417 Sum_probs=39.9
Q ss_pred CeeEEEecCChhhHHHHHH-hCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCC
Q psy16503 82 NVKVFISHGGFLGTTEALY-SGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGN 150 (244)
Q Consensus 82 ~~~l~IthgG~~s~~Eal~-~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~ 150 (244)
.++++|+=||=||+..++. ...|++++-.- .+|.. .+++.+++.+++++++++
T Consensus 52 ~~D~vi~lGGDGT~L~a~~~~~~PilGIN~G-------------~lGFL---~~~~~~~~~~~l~~i~~g 105 (271)
T PRK01185 52 NADVIITIGGDGTILRTLQRAKGPILGINMG-------------GLGFL---TEIEIDEVGSAIKKLIRG 105 (271)
T ss_pred CCCEEEEEcCcHHHHHHHHHcCCCEEEEECC-------------CCccC---cccCHHHHHHHHHHHHcC
Confidence 5799999999999999987 45688887431 12332 355789999999999965
No 173
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=76.98 E-value=5.8 Score=33.82 Aligned_cols=56 Identities=14% Similarity=0.147 Sum_probs=40.5
Q ss_pred CCeeEEEecCChhhHHHHHHh-----CCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCCh
Q psy16503 81 PNVKVFISHGGFLGTTEALYS-----GVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNP 151 (244)
Q Consensus 81 ~~~~l~IthgG~~s~~Eal~~-----gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~ 151 (244)
..+|++|+=||=||+..|+.. .+|++++..-+ .+|.. .+.+.+++.++++++++++
T Consensus 38 ~~~D~vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~G------------~lGFL---~~~~~~~~~~~l~~i~~g~ 98 (264)
T PRK03501 38 KNANIIVSIGGDGTFLQAVRKTGFREDCLYAGISTKD------------QLGFY---CDFHIDDLDKMIQAITKEE 98 (264)
T ss_pred CCccEEEEECCcHHHHHHHHHhcccCCCeEEeEecCC------------CCeEc---ccCCHHHHHHHHHHHHcCC
Confidence 347899999999999999874 57877775411 23333 3456788889998888653
No 174
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=76.79 E-value=6.7 Score=33.25 Aligned_cols=83 Identities=16% Similarity=0.106 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHhcCCCeEEEEecCCCCCCCCCCEEEeccCChhhhhCCCCeeEEEecCChhhHHHHHH-hCCcEEecCC
Q psy16503 32 PSDKRKAFLRAFEQIPQRVIWKWEGENMSGKIDKILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALY-SGVPIIGIPM 110 (244)
Q Consensus 32 ~~~~~~~i~~al~~~~~~viw~~~~~~~~~~~~nv~~~~~~pq~~lL~h~~~~l~IthgG~~s~~Eal~-~gvP~i~vP~ 110 (244)
..+..+.+.+.+.+.+..+.|..... +. - ..++++|+=||=||+..|+. .++|++++..
T Consensus 11 ~~~~~~~~~~~l~~~~~~~~~~~~~~---------------~~---~--~~~d~vi~iGGDGT~L~a~~~~~~Pilgin~ 70 (256)
T PRK14075 11 KEKEAKFLKEKISKEHEVVEFCEASA---------------SG---K--VTADLIIVVGGDGTVLKAAKKVGTPLVGFKA 70 (256)
T ss_pred HHHHHHHHHHHHHHcCCeeEeecccc---------------cc---c--CCCCEEEEECCcHHHHHHHHHcCCCEEEEeC
Confidence 35666667777766666666642211 11 1 46799999999999999876 5888888843
Q ss_pred CcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCC
Q psy16503 111 FGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGN 150 (244)
Q Consensus 111 ~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~ 150 (244)
-. +|.. .+++.+++.++++++++.
T Consensus 71 G~-------------lGfl---~~~~~~~~~~~l~~~~~g 94 (256)
T PRK14075 71 GR-------------LGFL---SSYTLEEIDRFLEDLKNW 94 (256)
T ss_pred CC-------------Cccc---cccCHHHHHHHHHHHHcC
Confidence 11 3333 245678888888888764
No 175
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=75.36 E-value=25 Score=31.17 Aligned_cols=32 Identities=22% Similarity=0.388 Sum_probs=27.3
Q ss_pred hhCCCCeeEEEecCChhh---HHHHHHhCCcEEec
Q psy16503 77 ILDHPNVKVFISHGGFLG---TTEALYSGVPIIGI 108 (244)
Q Consensus 77 lL~h~~~~l~IthgG~~s---~~Eal~~gvP~i~v 108 (244)
++..-+-|++|++||+-| +..|...|+|+++.
T Consensus 86 i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~ 120 (352)
T PRK12446 86 RIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLH 120 (352)
T ss_pred HHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEE
Confidence 455677889999999986 89999999999875
No 176
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=75.17 E-value=13 Score=36.88 Aligned_cols=87 Identities=10% Similarity=0.077 Sum_probs=54.0
Q ss_pred cCChh---hhhCCCCeeEEEec---CCh-hhHHHHHHhCCc---EEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHH
Q psy16503 71 WAPQR---DILDHPNVKVFISH---GGF-LGTTEALYSGVP---IIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETV 140 (244)
Q Consensus 71 ~~pq~---~lL~h~~~~l~Ith---gG~-~s~~Eal~~gvP---~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l 140 (244)
++|.. +++ ..+|+|+.- -|+ .+..|++++|+| +++++-++ ..+..+ ...|+.+++. +.+++
T Consensus 363 ~v~~~el~aly--~~ADvfvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~---G~~~~l--~~~allVnP~--D~~~l 433 (797)
T PLN03063 363 SVDFNYLCALY--AITDVMLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFA---GAGQSL--GAGALLVNPW--NITEV 433 (797)
T ss_pred CCCHHHHHHHH--HhCCEEEeCccccccCcchhhHheeecCCCCCEEeeCCc---Cchhhh--cCCeEEECCC--CHHHH
Confidence 45544 445 678888864 465 577899999999 44444322 111111 1258888765 57899
Q ss_pred HHHHHHHhC-ChhH-HHHHHHHHHHHhC
Q psy16503 141 LVALRTVLG-NPSY-KKRAEKVARLFQD 166 (244)
Q Consensus 141 ~~ai~~ll~-~~~y-~~~a~~~s~~~~~ 166 (244)
.++|.++|+ ++.. +++.+++.+.+..
T Consensus 434 A~AI~~aL~m~~~er~~r~~~~~~~v~~ 461 (797)
T PLN03063 434 SSAIKEALNMSDEERETRHRHNFQYVKT 461 (797)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhh
Confidence 999999998 4433 4444445555544
No 177
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=74.99 E-value=35 Score=29.91 Aligned_cols=75 Identities=17% Similarity=0.235 Sum_probs=54.2
Q ss_pred CCEEE-eccCChh---hhhCCCCeeEEEec----CChhhHHHHHHhCCcEEec---CCCcchhhHHHHHHHcCceeecCC
Q psy16503 64 DKILL-KSWAPQR---DILDHPNVKVFISH----GGFLGTTEALYSGVPIIGI---PMFGDQKANIRVVEKAGFGVTLPY 132 (244)
Q Consensus 64 ~nv~~-~~~~pq~---~lL~h~~~~l~Ith----gG~~s~~Eal~~gvP~i~v---P~~~dQ~~na~~~~~~G~g~~l~~ 132 (244)
+++.+ .+++|.. ++| ..||+.|-. =|.|+++-.++.|+|+++- |++ ..+.+.|+-+..+.
T Consensus 206 ~~~~~L~e~l~f~eYl~lL--~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~r~n~fw-------qdl~e~gv~Vlf~~ 276 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALL--RQCDLGYFIFARQQGIGTLCLLIQLGKPVVLSRDNPFW-------QDLTEQGLPVLFTG 276 (322)
T ss_pred ccEEehhhhCCHHHHHHHH--HhCCEEEEeechhhHHhHHHHHHHCCCcEEEecCCchH-------HHHHhCCCeEEecC
Confidence 56655 4567744 678 667775542 5899999999999999986 433 34677888888788
Q ss_pred CCCCHHHHHHHHHHH
Q psy16503 133 DQITEETVLVALRTV 147 (244)
Q Consensus 133 ~~~~~~~l~~ai~~l 147 (244)
++++...+.++=+++
T Consensus 277 d~L~~~~v~e~~rql 291 (322)
T PRK02797 277 DDLDEDIVREAQRQL 291 (322)
T ss_pred CcccHHHHHHHHHHH
Confidence 888887777764444
No 178
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=72.50 E-value=11 Score=32.87 Aligned_cols=55 Identities=25% Similarity=0.436 Sum_probs=39.1
Q ss_pred CCchHHHHHHhcC----CCceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCC
Q psy16503 1 MNETDIKKFLDES----VNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGE 57 (244)
Q Consensus 1 ~~p~~l~~~l~~~----~~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~ 57 (244)
++++++++|++.- ++.-++|-.||. +..++.+....+++.+++.+..|+.-.+++
T Consensus 111 is~~~~~~~l~~~~~~l~~~d~VvlsGSl--P~g~~~d~y~~li~~~~~~g~~vilD~Sg~ 169 (310)
T COG1105 111 ISEAELEQFLEQLKALLESDDIVVLSGSL--PPGVPPDAYAELIRILRQQGAKVILDTSGE 169 (310)
T ss_pred CCHHHHHHHHHHHHHhcccCCEEEEeCCC--CCCCCHHHHHHHHHHHHhcCCeEEEECChH
Confidence 3566777766542 233456666777 445889999999999988888888877764
No 179
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=71.84 E-value=8.3 Score=36.65 Aligned_cols=54 Identities=24% Similarity=0.350 Sum_probs=40.9
Q ss_pred CeeEEEecCChhhHHHHHH----hCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCCh
Q psy16503 82 NVKVFISHGGFLGTTEALY----SGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNP 151 (244)
Q Consensus 82 ~~~l~IthgG~~s~~Eal~----~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~ 151 (244)
.++++|+-||=||+..++. .++|++++-.-. +|. ..+++.+++.++++++++++
T Consensus 348 ~~dlvi~lGGDGT~L~aa~~~~~~~~PilGin~G~-------------lGF---L~~~~~~~~~~~l~~~~~g~ 405 (569)
T PRK14076 348 EISHIISIGGDGTVLRASKLVNGEEIPIICINMGT-------------VGF---LTEFSKEEIFKAIDSIISGE 405 (569)
T ss_pred CCCEEEEECCcHHHHHHHHHhcCCCCCEEEEcCCC-------------CCc---CcccCHHHHHHHHHHHHcCC
Confidence 5799999999999999977 378999985411 222 23557788999999998653
No 180
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=71.79 E-value=7.4 Score=33.40 Aligned_cols=94 Identities=18% Similarity=0.178 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecC-CCCCCCCCCEEEeccCChhhhhCCCCeeEEEecCChhhHHHHHH---hCCcEEec
Q psy16503 33 SDKRKAFLRAFEQIPQRVIWKWEG-ENMSGKIDKILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALY---SGVPIIGI 108 (244)
Q Consensus 33 ~~~~~~i~~al~~~~~~viw~~~~-~~~~~~~~nv~~~~~~pq~~lL~h~~~~l~IthgG~~s~~Eal~---~gvP~i~v 108 (244)
.+..+.+.+.|++.+..+.+.... ....... . .+...+.. ..++++|+-||=||+.+++. .++|++++
T Consensus 15 ~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~-~------~~~~~~~~-~~~d~vi~iGGDGTlL~a~~~~~~~~pi~gI 86 (277)
T PRK03708 15 LKLAYRVYDFLKVSGYEVVVDSETYEHLPEFS-E------EDVLPLEE-MDVDFIIAIGGDGTILRIEHKTKKDIPILGI 86 (277)
T ss_pred HHHHHHHHHHHHHCCCEEEEecchhhhcCccc-c------cccccccc-cCCCEEEEEeCcHHHHHHHHhcCCCCeEEEE
Confidence 566777888887777776663211 1111000 0 01111111 36899999999999999984 45789988
Q ss_pred CCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCC
Q psy16503 109 PMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGN 150 (244)
Q Consensus 109 P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~ 150 (244)
|.-. .|.. .+++.+++.+++++++++
T Consensus 87 n~G~-------------lGFl---~~~~~~~~~~~l~~i~~g 112 (277)
T PRK03708 87 NMGT-------------LGFL---TEVEPEETFFALSRLLEG 112 (277)
T ss_pred eCCC-------------CCcc---ccCCHHHHHHHHHHHHcC
Confidence 7621 1111 234567788888888855
No 181
>PLN02929 NADH kinase
Probab=71.10 E-value=11 Score=32.90 Aligned_cols=67 Identities=18% Similarity=0.173 Sum_probs=45.5
Q ss_pred CCeeEEEecCChhhHHHHHH---hCCcEEecCCCc------chhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCCh
Q psy16503 81 PNVKVFISHGGFLGTTEALY---SGVPIIGIPMFG------DQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNP 151 (244)
Q Consensus 81 ~~~~l~IthgG~~s~~Eal~---~gvP~i~vP~~~------dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~ 151 (244)
..+|++|+-||=||+.-|+. .++|++++-.-. +++.|.-. +....|...+ .+.+++.+++++++++.
T Consensus 63 ~~~Dlvi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~-~~r~lGfL~~---~~~~~~~~~L~~il~g~ 138 (301)
T PLN02929 63 RDVDLVVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFD-ARRSTGHLCA---ATAEDFEQVLDDVLFGR 138 (301)
T ss_pred CCCCEEEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccc-cccCcccccc---CCHHHHHHHHHHHHcCC
Confidence 56899999999999999855 468999985421 12233211 2223555543 46788999999999653
No 182
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=70.95 E-value=10 Score=35.41 Aligned_cols=55 Identities=22% Similarity=0.237 Sum_probs=41.1
Q ss_pred CCeeEEEecCChhhHHHHHHh----CCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCCh
Q psy16503 81 PNVKVFISHGGFLGTTEALYS----GVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNP 151 (244)
Q Consensus 81 ~~~~l~IthgG~~s~~Eal~~----gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~ 151 (244)
..+|++|+=||=||+..|+.. ++|++++..- .+|.. .+++.+++.++|+++++++
T Consensus 261 ~~~DlVIsiGGDGTlL~Aar~~~~~~iPILGIN~G-------------~LGFL---t~i~~~e~~~~Le~il~G~ 319 (508)
T PLN02935 261 TKVDLVITLGGDGTVLWAASMFKGPVPPVVPFSMG-------------SLGFM---TPFHSEQYRDCLDAILKGP 319 (508)
T ss_pred cCCCEEEEECCcHHHHHHHHHhccCCCcEEEEeCC-------------Cccee---cccCHHHHHHHHHHHHcCC
Confidence 468999999999999999774 5788877320 13433 3457889999999998653
No 183
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=70.53 E-value=49 Score=26.95 Aligned_cols=86 Identities=23% Similarity=0.171 Sum_probs=54.6
Q ss_pred chHHHHHHhcC---CCceEEEEcCCCCCCCCCCHHHHHHHHHHHhcC-CCeEEEEecCCCCCCCCCCEEEeccCCh-hhh
Q psy16503 3 ETDIKKFLDES---VNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQI-PQRVIWKWEGENMSGKIDKILLKSWAPQ-RDI 77 (244)
Q Consensus 3 p~~l~~~l~~~---~~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~-~~~viw~~~~~~~~~~~~nv~~~~~~pq-~~l 77 (244)
++.+.+++... ...++||...|. .+.+....+.+++.++ +..+......+ -+. .+.
T Consensus 17 ~~~l~~~l~~~~~~~~~i~~IptAs~-----~~~~~~~~~~~a~~~l~G~~~~~~~~~~--------------~~~~~~~ 77 (212)
T cd03146 17 LPAIDDLLLSLTKARPKVLFVPTASG-----DRDEYTARFYAAFESLRGVEVSHLHLFD--------------TEDPLDA 77 (212)
T ss_pred hHHHHHHHHHhccCCCeEEEECCCCC-----CHHHHHHHHHHHHhhccCcEEEEEeccC--------------cccHHHH
Confidence 45677777765 367889988887 4568888899999988 76443221100 122 344
Q ss_pred hCCCCeeEEEecCC--------------hhhHHHHHHhCCcEEecC
Q psy16503 78 LDHPNVKVFISHGG--------------FLGTTEALYSGVPIIGIP 109 (244)
Q Consensus 78 L~h~~~~l~IthgG--------------~~s~~Eal~~gvP~i~vP 109 (244)
+ .++++++--|| ...+.++...|+|++++-
T Consensus 78 l--~~ad~I~l~GG~~~~~~~~l~~~~l~~~l~~~~~~g~~i~G~S 121 (212)
T cd03146 78 L--LEADVIYVGGGNTFNLLAQWREHGLDAILKAALERGVVYIGWS 121 (212)
T ss_pred H--hcCCEEEECCchHHHHHHHHHHcCHHHHHHHHHHCCCEEEEEC
Confidence 4 46777777776 222444556799998874
No 184
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=69.60 E-value=45 Score=26.20 Aligned_cols=85 Identities=15% Similarity=0.183 Sum_probs=46.5
Q ss_pred CCchHHHHHHhc--CCCceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCCCCCCCCCEEEeccCChhhhh
Q psy16503 1 MNETDIKKFLDE--SVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGKIDKILLKSWAPQRDIL 78 (244)
Q Consensus 1 ~~p~~l~~~l~~--~~~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~~~~~~~nv~~~~~~pq~~lL 78 (244)
+++++++++.+. ..+.+.++..|+.. -..+.+...|...+..+... ++. ....+..
T Consensus 18 l~~~~l~~~~~~i~~a~~I~i~G~G~S~-------~~A~~~~~~l~~~g~~~~~~-~~~----------~~~~~~~---- 75 (179)
T cd05005 18 IDEEELDKLISAILNAKRIFVYGAGRSG-------LVAKAFAMRLMHLGLNVYVV-GET----------TTPAIGP---- 75 (179)
T ss_pred cCHHHHHHHHHHHHhCCeEEEEecChhH-------HHHHHHHHHHHhCCCeEEEe-CCC----------CCCCCCC----
Confidence 356666666543 12467788888772 23444455565555554442 210 0112222
Q ss_pred CCCCeeEEEecCChh-----hHHHHHHhCCcEEecC
Q psy16503 79 DHPNVKVFISHGGFL-----GTTEALYSGVPIIGIP 109 (244)
Q Consensus 79 ~h~~~~l~IthgG~~-----s~~Eal~~gvP~i~vP 109 (244)
..+-++|+++|.+ .+..|-..|+|+|.+-
T Consensus 76 --~D~vI~iS~sG~t~~~i~~~~~ak~~g~~iI~IT 109 (179)
T cd05005 76 --GDLLIAISGSGETSSVVNAAEKAKKAGAKVVLIT 109 (179)
T ss_pred --CCEEEEEcCCCCcHHHHHHHHHHHHCCCeEEEEE
Confidence 3445889998853 3334456788888873
No 185
>KOG4180|consensus
Probab=66.47 E-value=6.8 Score=34.29 Aligned_cols=28 Identities=29% Similarity=0.261 Sum_probs=24.4
Q ss_pred CCeeEEEecCChhhHHHHHH----hCCcEEec
Q psy16503 81 PNVKVFISHGGFLGTTEALY----SGVPIIGI 108 (244)
Q Consensus 81 ~~~~l~IthgG~~s~~Eal~----~gvP~i~v 108 (244)
+-+|++|+-||-||+.-|.. --+|+|++
T Consensus 104 ~waD~VisvGGDGTfL~Aasrv~~~~~PViGv 135 (395)
T KOG4180|consen 104 RWADMVISVGGDGTFLLAASRVIDDSKPVIGV 135 (395)
T ss_pred chhhEEEEecCccceeehhhhhhccCCceeee
Confidence 67899999999999987765 57999998
No 186
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=66.00 E-value=22 Score=27.65 Aligned_cols=135 Identities=13% Similarity=0.225 Sum_probs=65.7
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCCCCCCCCCEEEeccCChhhhhCCCCeeEEEecCChh---
Q psy16503 17 VIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGKIDKILLKSWAPQRDILDHPNVKVFISHGGFL--- 93 (244)
Q Consensus 17 vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~~~~~~~nv~~~~~~pq~~lL~h~~~~l~IthgG~~--- 93 (244)
.|.|-+||.. .....++..+.|++++..+-..+-. ....|+. +..+ .+-+.+..+++||+-+|..
T Consensus 2 ~V~Ii~gs~S-----D~~~~~~a~~~L~~~gi~~~~~V~s--aHR~p~~--l~~~---~~~~~~~~~~viIa~AG~~a~L 69 (150)
T PF00731_consen 2 KVAIIMGSTS-----DLPIAEEAAKTLEEFGIPYEVRVAS--AHRTPER--LLEF---VKEYEARGADVIIAVAGMSAAL 69 (150)
T ss_dssp EEEEEESSGG-----GHHHHHHHHHHHHHTT-EEEEEE----TTTSHHH--HHHH---HHHTTTTTESEEEEEEESS--H
T ss_pred eEEEEeCCHH-----HHHHHHHHHHHHHHcCCCEEEEEEe--ccCCHHH--HHHH---HHHhccCCCEEEEEECCCcccc
Confidence 4666677762 4678889999999887543322221 1111111 0111 1222334688999976642
Q ss_pred -hHHHHHHhCCcEEecCCCcchhhHHH---HHHH--cCceeec-CCC-CCCHHHHHHHHHHHhCChhHHHHHHHHHHHHh
Q psy16503 94 -GTTEALYSGVPIIGIPMFGDQKANIR---VVEK--AGFGVTL-PYD-QITEETVLVALRTVLGNPSYKKRAEKVARLFQ 165 (244)
Q Consensus 94 -s~~Eal~~gvP~i~vP~~~dQ~~na~---~~~~--~G~g~~l-~~~-~~~~~~l~~ai~~ll~~~~y~~~a~~~s~~~~ 165 (244)
++.-+ ..-.|+|++|....+..... .+.. .|.++.. ..+ -.+..-+.-.|-. +.|++.+++.+...+..+
T Consensus 70 pgvva~-~t~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i~~~~nAA~~A~~ILa-~~d~~l~~kl~~~~~~~~ 147 (150)
T PF00731_consen 70 PGVVAS-LTTLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGINNGFNAALLAARILA-LKDPELREKLRAYREKMK 147 (150)
T ss_dssp HHHHHH-HSSS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SSTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred hhhhee-ccCCCEEEeecCcccccCcccHHHHHhccCCCCceEEEccCchHHHHHHHHHHh-cCCHHHHHHHHHHHHHHH
Confidence 33333 35899999998765443222 2222 2555432 222 1122223333322 357888888887776654
No 187
>PF10933 DUF2827: Protein of unknown function (DUF2827); InterPro: IPR021234 This is a family of uncharacterised proteins found in Burkholderia.
Probab=65.76 E-value=38 Score=30.21 Aligned_cols=95 Identities=20% Similarity=0.300 Sum_probs=62.8
Q ss_pred EEEeccCChhhhhCCCCeeEEEec---CChh-hHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCC--HHH
Q psy16503 66 ILLKSWAPQRDILDHPNVKVFISH---GGFL-GTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQIT--EET 139 (244)
Q Consensus 66 v~~~~~~pq~~lL~h~~~~l~Ith---gG~~-s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~--~~~ 139 (244)
..+.+-.+..+.|+ ..+|++|+| -|.| ..+|+++.|-|+| .|+..+.+ +|..-+..+.. .+.
T Consensus 255 asfegR~~~p~fla-~~tD~VvSHqWeN~lNYlY~daLyggYPLV---------HNS~~l~d--~GYYY~~fD~~~G~r~ 322 (364)
T PF10933_consen 255 ASFEGRFDFPDFLA-QHTDAVVSHQWENPLNYLYYDALYGGYPLV---------HNSPLLKD--VGYYYPDFDAFEGARQ 322 (364)
T ss_pred eEEeeecChHHHHH-hCCCEEEeccccchhhHHHHHHHhcCCCcc---------cCcchhcc--cCcCCCCccHHHHHHH
Confidence 44445566666676 579999999 4444 4579999999986 56777765 66665543321 245
Q ss_pred HHHHHHHHhCC-hhHHHHHHHHHHHHhCCCCChHHH
Q psy16503 140 VLVALRTVLGN-PSYKKRAEKVARLFQDRPMPPLDT 174 (244)
Q Consensus 140 l~~ai~~ll~~-~~y~~~a~~~s~~~~~~~~~~~~~ 174 (244)
|.+|+++=-.| +.|+++++++-..+.. .++...
T Consensus 323 L~~A~~~HD~~~~~Y~~ra~~~l~~~~p--~n~~nv 356 (364)
T PF10933_consen 323 LLRAIREHDADLDAYRARARRLLDRLSP--ENPANV 356 (364)
T ss_pred HHHHHHHccccHHHHHHHHHHHHHhhCC--CCHHHH
Confidence 66666554434 7899999998877754 555443
No 188
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=65.45 E-value=2.8 Score=33.29 Aligned_cols=33 Identities=27% Similarity=0.526 Sum_probs=24.0
Q ss_pred CCCCeeEEEecCChhhHHHHHHhCCcEEecCCCc
Q psy16503 79 DHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFG 112 (244)
Q Consensus 79 ~h~~~~l~IthgG~~s~~Eal~~gvP~i~vP~~~ 112 (244)
.+..++++|++||...+..... ++|++-+|..+
T Consensus 31 ~~~g~dViIsRG~ta~~lr~~~-~iPVV~I~~s~ 63 (176)
T PF06506_consen 31 ESEGADVIISRGGTAELLRKHV-SIPVVEIPISG 63 (176)
T ss_dssp TTTT-SEEEEEHHHHHHHHCC--SS-EEEE---H
T ss_pred HhcCCeEEEECCHHHHHHHHhC-CCCEEEECCCH
Confidence 5689999999999888888876 99999999865
No 189
>COG3563 KpsC Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=65.06 E-value=1.2e+02 Score=28.36 Aligned_cols=155 Identities=16% Similarity=0.198 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecC-CC--------C--CCCCCCEEE-eccCChhhhhCCCCeeEEEe-cCChhhHHHHH
Q psy16503 33 SDKRKAFLRAFEQIPQRVIWKWEG-EN--------M--SGKIDKILL-KSWAPQRDILDHPNVKVFIS-HGGFLGTTEAL 99 (244)
Q Consensus 33 ~~~~~~i~~al~~~~~~viw~~~~-~~--------~--~~~~~nv~~-~~~~pq~~lL~h~~~~l~It-hgG~~s~~Eal 99 (244)
..++..+-.|+.+.|..-||.-.. +- + -..+..+++ ..-+....+|.| +|=+-| -.|+ =.||+
T Consensus 166 ~~~l~m~~~ai~enp~a~i~~kthpdvl~gkkqg~lt~~~~~~r~~ll~edfnpisll~~--~dkvy~~ts~m--gfeal 241 (671)
T COG3563 166 STFLLMFQTAINENPQADIWVKTHPDVLCGKKQGYLTQLSQQHRVHLLAEDFNPISLLQN--VDKVYCVTSQM--GFEAL 241 (671)
T ss_pred hHHHHHHHHHHhcCCcccEEEEeCCchhcCcccchhhhhccCceEEEecccCChHHHHHh--cceeEEeeccc--cHHHH
Confidence 466777788899999877886322 11 1 123444444 445666777743 443332 1222 26999
Q ss_pred HhCCcEEec--CCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCChhHHHHHHHHHHHHhCCCCChHHHHHH
Q psy16503 100 YSGVPIIGI--PMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSYKKRAEKVARLFQDRPMPPLDTAIY 177 (244)
Q Consensus 100 ~~gvP~i~v--P~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~~y~~~a~~~s~~~~~~~~~~~~~a~~ 177 (244)
.+|+|+++. |.+. |.|+.=|.-+.+...-.+.+.++ +-..--+.++.+... .+.....-+
T Consensus 242 l~~~~~~~fg~p~ya------------gwgltddrl~~~~r~akrsl~ql-----fyaay~~y~ry~np~-~~~~~~lfd 303 (671)
T COG3563 242 LCGKPLTTFGLPWYA------------GWGLTDDRLEQTQRRAKRSLLQL-----FYAAYLQYSRYLNPN-TGEAGSLFD 303 (671)
T ss_pred hcCCceeeecchhhc------------ccCcchhHHHHHHhhhhhhHHHH-----HHHHHHHHHHhcCCC-ccccchHHH
Confidence 999999987 4432 44443221111111111122222 222333344444321 222344556
Q ss_pred HHHHHHHcCCCCCC-Cccc--CCccHHHHHHHHHH
Q psy16503 178 WIEHVIRHGGGAHL-RPAS--LELYWWQYILLDVI 209 (244)
Q Consensus 178 ~ie~~~~~~~~~~l-~~~~--~~~~~~~~~~lDv~ 209 (244)
.++|++..+..+.. +..- ..|++|...-.+=+
T Consensus 304 ~id~lat~k~~~~~~~~~lf~vG~~~WKR~v~~pf 338 (671)
T COG3563 304 VIDYLATVKRKNDKLRGELFCVGMSLWKRAVAKPF 338 (671)
T ss_pred HHHHHHHHhccccCCCCceEEEehHHhhhhhhccc
Confidence 78888877543322 2221 26777777665533
No 190
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=64.24 E-value=18 Score=30.46 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=24.6
Q ss_pred CCeeEEEecCChhhHHHHHHh----CCcEEecCC
Q psy16503 81 PNVKVFISHGGFLGTTEALYS----GVPIIGIPM 110 (244)
Q Consensus 81 ~~~~l~IthgG~~s~~Eal~~----gvP~i~vP~ 110 (244)
..++++|+-||=||+..|+.. ++|++++..
T Consensus 24 ~~~Dlvi~iGGDGTlL~a~~~~~~~~~PvlGIN~ 57 (246)
T PRK04761 24 EEADVIVALGGDGFMLQTLHRYMNSGKPVYGMNR 57 (246)
T ss_pred ccCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeC
Confidence 347899999999999988664 689998854
No 191
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=62.75 E-value=1.5e+02 Score=30.10 Aligned_cols=89 Identities=9% Similarity=-0.006 Sum_probs=49.9
Q ss_pred ccCChhhhhC-CCCeeEEEe---cCChhh-HHHHHHhCC---cEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHH
Q psy16503 70 SWAPQRDILD-HPNVKVFIS---HGGFLG-TTEALYSGV---PIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVL 141 (244)
Q Consensus 70 ~~~pq~~lL~-h~~~~l~It---hgG~~s-~~Eal~~gv---P~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~ 141 (244)
..+|+.++++ -..+|+++- .-|+|- ..|+++++. .+++++-+. .-|..+ ..-|+.+++. +.+++.
T Consensus 446 ~~l~~eeL~AlY~~ADV~lvTslrDGmNLva~Eyva~~~~~~GvLILSEfa---Gaa~~L--~~~AllVNP~--D~~~vA 518 (934)
T PLN03064 446 RSLDFHALCALYAVTDVALVTSLRDGMNLVSYEFVACQDSKKGVLILSEFA---GAAQSL--GAGAILVNPW--NITEVA 518 (934)
T ss_pred cCCCHHHHHHHHHhCCEEEeCccccccCchHHHHHHhhcCCCCCeEEeCCC---chHHHh--CCceEEECCC--CHHHHH
Confidence 3466664322 156677665 467764 559999955 222223332 122222 1247788765 578999
Q ss_pred HHHHHHhC-Chh-HHHHHHHHHHHHh
Q psy16503 142 VALRTVLG-NPS-YKKRAEKVARLFQ 165 (244)
Q Consensus 142 ~ai~~ll~-~~~-y~~~a~~~s~~~~ 165 (244)
++|.+.|+ +++ .+++.++..+.+.
T Consensus 519 ~AI~~AL~M~~~Er~~r~~~~~~~V~ 544 (934)
T PLN03064 519 ASIAQALNMPEEEREKRHRHNFMHVT 544 (934)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhhcc
Confidence 99999987 443 3344444444443
No 192
>PLN02727 NAD kinase
Probab=61.53 E-value=19 Score=36.16 Aligned_cols=55 Identities=18% Similarity=0.106 Sum_probs=41.6
Q ss_pred CCeeEEEecCChhhHHHHHHh----CCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCCh
Q psy16503 81 PNVKVFISHGGFLGTTEALYS----GVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNP 151 (244)
Q Consensus 81 ~~~~l~IthgG~~s~~Eal~~----gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~ 151 (244)
..+|++|+=||=||+..|+.. ++|++++-+- .+|.. .++..+++.++|.+++++.
T Consensus 742 ~~~DLVIvLGGDGTlLrAar~~~~~~iPILGINlG-------------rLGFL---Tdi~~ee~~~~L~~Il~G~ 800 (986)
T PLN02727 742 ERVDFVACLGGDGVILHASNLFRGAVPPVVSFNLG-------------SLGFL---TSHYFEDFRQDLRQVIHGN 800 (986)
T ss_pred cCCCEEEEECCcHHHHHHHHHhcCCCCCEEEEeCC-------------Ccccc---ccCCHHHHHHHHHHHHcCC
Confidence 579999999999999999764 6898888431 12322 3457888999999998653
No 193
>PRK13240 pbsY photosystem II protein Y; Reviewed
Probab=60.94 E-value=23 Score=20.90 Aligned_cols=35 Identities=20% Similarity=0.322 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q psy16503 208 VIIALILLIAAMVWSIQWLVRYALITYYNTVDDKK 242 (244)
Q Consensus 208 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (244)
+.++++=++.++.|.++.+.+-.+....++..++|
T Consensus 5 lliVl~Pil~A~~Wa~fNIg~~Al~Q~q~~~~~~~ 39 (40)
T PRK13240 5 LLIVLAPILAAAGWAVFNIGKAAREQFQRFLNRKA 39 (40)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC
Confidence 34455557778889999999988888777776655
No 194
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=60.56 E-value=1.2e+02 Score=26.90 Aligned_cols=127 Identities=12% Similarity=0.009 Sum_probs=87.5
Q ss_pred CceEEEE---cCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCCCCCCCCCEEEeccCChhhhhCCCCeeEEEecCC
Q psy16503 15 NGVIYFS---MGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGKIDKILLKSWAPQRDILDHPNVKVFISHGG 91 (244)
Q Consensus 15 ~~vI~vs---~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~~~~~~~nv~~~~~~pq~~lL~h~~~~l~IthgG 91 (244)
-..||+. +|.-.+..+++.+.+++.++-..+.+.++.......-. +-....|....+-|..-.+|.+|-. .
T Consensus 27 ADaVY~G~~~~~~R~~a~nfs~~~l~e~i~~ah~~gkk~~V~~N~~~~-----~~~~~~~~~~l~~l~e~GvDaviv~-D 100 (347)
T COG0826 27 ADAVYIGEKEFGLRRRALNFSVEDLAEAVELAHSAGKKVYVAVNTLLH-----NDELETLERYLDRLVELGVDAVIVA-D 100 (347)
T ss_pred CCEEEeCCcccccccccccCCHHHHHHHHHHHHHcCCeEEEEeccccc-----cchhhHHHHHHHHHHHcCCCEEEEc-C
Confidence 3589998 56665555678888888888888888877777653111 1111124444555555677776653 3
Q ss_pred hhhHHHHHHhC--CcEEecCCC-cchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHH
Q psy16503 92 FLGTTEALYSG--VPIIGIPMF-GDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTV 147 (244)
Q Consensus 92 ~~s~~Eal~~g--vP~i~vP~~-~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~l 147 (244)
.+-+.=+-..| .|+..-++. ..-..-++...+.|+-+++...+++.++|.+..++.
T Consensus 101 pg~i~l~~e~~p~l~ih~S~q~~v~N~~~~~f~~~~G~~rvVl~rEls~~ei~~i~~~~ 159 (347)
T COG0826 101 PGLIMLARERGPDLPIHVSTQANVTNAETAKFWKELGAKRVVLPRELSLEEIKEIKEQT 159 (347)
T ss_pred HHHHHHHHHhCCCCcEEEeeeEecCCHHHHHHHHHcCCEEEEeCccCCHHHHHHHHHhC
Confidence 33344444344 898888774 566777888899999999999999999999999887
No 195
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=59.38 E-value=1.1e+02 Score=25.91 Aligned_cols=126 Identities=10% Similarity=0.146 Sum_probs=68.3
Q ss_pred CCchHHHHHHhcCCCceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCCCCCCCCCEEEeccCChh-hhhC
Q psy16503 1 MNETDIKKFLDESVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGKIDKILLKSWAPQR-DILD 79 (244)
Q Consensus 1 ~~p~~l~~~l~~~~~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~~~~~~~nv~~~~~~pq~-~lL~ 79 (244)
++.+++.+++.+.+-.+|+=+.... -.+..+...+++.+.+.. ++.+..... ..+++++.++-+... +.+.
T Consensus 52 l~~~~l~~~l~~~~i~~VIDAtHPf------A~~is~~a~~a~~~~~ip-ylR~eR~~~-~~~~~~~~v~~~~ea~~~~~ 123 (256)
T TIGR00715 52 LDPQELREFLKRHSIDILVDATHPF------AAQITTNATAVCKELGIP-YVRFERPPL-ALGKNIIEVPDIEEATRVAY 123 (256)
T ss_pred CCHHHHHHHHHhcCCCEEEEcCCHH------HHHHHHHHHHHHHHhCCc-EEEEECCCC-CCCCCeEEeCCHHHHHHHhh
Confidence 4567788888765533444333222 346677777888777653 223332222 234455544433322 2332
Q ss_pred C---CCeeEEEecCCh----------------------hhHHHHHHhCCc---EEecCCCcchhhHHHHHHHcCceeecC
Q psy16503 80 H---PNVKVFISHGGF----------------------LGTTEALYSGVP---IIGIPMFGDQKANIRVVEKAGFGVTLP 131 (244)
Q Consensus 80 h---~~~~l~IthgG~----------------------~s~~Eal~~gvP---~i~vP~~~dQ~~na~~~~~~G~g~~l~ 131 (244)
. ..-.+|+|-|-. .++..+...|.| +|.+==.+.+..|...+.+.|+..++.
T Consensus 124 ~~~~~~~~i~lttG~k~l~~f~~~~~~~~~~~RvLP~~~~l~~~~~~G~~~~~iia~~gPfs~e~n~al~~~~~i~~lVt 203 (256)
T TIGR00715 124 QPYLRGKRVFLTAGASWLSHFSLSQDEAVVFVRVLPYPQALAQALKLGFPSDRIIAMRGPFSEELEKALLREYRIDAVVT 203 (256)
T ss_pred hccccCCcEEEecCcchHHHHhhccCCceEEEEECCCchhhHHHHHcCCChhcEEEEeCCCCHHHHHHHHHHcCCCEEEE
Confidence 1 123566665542 244445555555 344411234778889999999999998
Q ss_pred CCC
Q psy16503 132 YDQ 134 (244)
Q Consensus 132 ~~~ 134 (244)
+++
T Consensus 204 K~S 206 (256)
T TIGR00715 204 KAS 206 (256)
T ss_pred cCC
Confidence 765
No 196
>PRK03202 6-phosphofructokinase; Provisional
Probab=55.97 E-value=1.4e+02 Score=26.17 Aligned_cols=143 Identities=14% Similarity=0.191 Sum_probs=80.8
Q ss_pred CCchHHHHHHhcCCCceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCC-------C----------CCC-
Q psy16503 1 MNETDIKKFLDESVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGEN-------M----------SGK- 62 (244)
Q Consensus 1 ~~p~~l~~~l~~~~~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~-------~----------~~~- 62 (244)
++++++..|.... |.+ +||.-......++..+.+++.|++.+...+...+++. + |..
T Consensus 52 l~~~~v~~~~~~g--Gs~---LgtsR~~~~~~~~~~~~~~~~l~~~~Id~Li~IGGd~s~~~a~~L~e~~i~vigiPkTI 126 (320)
T PRK03202 52 LDLKSVSDIINRG--GTI---LGSARFPEFKDEEGRAKAIENLKKLGIDALVVIGGDGSYMGAKRLTEHGIPVIGLPGTI 126 (320)
T ss_pred CCHHHHhhHHhCC--Ccc---cccCCCCCcCCHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHhcCCcEEEecccc
Confidence 3566777776543 443 6666432222467889999999998877777777631 1 111
Q ss_pred CCCEEEeccCC----------------hhhhhCCCCeeEEEe---cCChhhHHHHHHhCCcEEecCCC-cchhhHHH---
Q psy16503 63 IDKILLKSWAP----------------QRDILDHPNVKVFIS---HGGFLGTTEALYSGVPIIGIPMF-GDQKANIR--- 119 (244)
Q Consensus 63 ~~nv~~~~~~p----------------q~~lL~h~~~~l~It---hgG~~s~~Eal~~gvP~i~vP~~-~dQ~~na~--- 119 (244)
..++.-.++-+ ..+.-+|+++-++=. |+|+.++.-+++.|.-++.+|-. .+...-+.
T Consensus 127 DNDl~gtd~s~Gf~TA~~~~~~~i~~l~~~a~s~~rv~iVEvMGR~~G~LAl~~ala~~a~~iliPE~~~~~~~l~~~i~ 206 (320)
T PRK03202 127 DNDIAGTDYTIGFDTALNTAVEAIDRLRDTASSHERVFIVEVMGRHAGDLALHAGIAGGAEVILIPEVPFDIEELCAKIK 206 (320)
T ss_pred cCCCCCCccCcCHHHHHHHHHHHHHHHHHHHhccCCEEEEEECCCChHHHHHHHHHhcCCCEEEeCCCCCCHHHHHHHHH
Confidence 11222222111 112224555444434 88999999999999989999964 23333323
Q ss_pred -HHHH-cCceeecC-CCCCCHHHHHHHHHHHh
Q psy16503 120 -VVEK-AGFGVTLP-YDQITEETVLVALRTVL 148 (244)
Q Consensus 120 -~~~~-~G~g~~l~-~~~~~~~~l~~ai~~ll 148 (244)
+..+ .+.++++- +.-...+.+.+.+++-+
T Consensus 207 ~r~~~g~~~~vivvsEg~~~~~~l~~~i~~~~ 238 (320)
T PRK03202 207 KGRERGKKHAIIVVAEGVMPAEELAKEIEERT 238 (320)
T ss_pred HHHHhcCCcEEEEEeCCCCCHHHHHHHHHHHh
Confidence 2333 56666643 33234556666666655
No 197
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=53.57 E-value=40 Score=29.88 Aligned_cols=96 Identities=14% Similarity=0.136 Sum_probs=46.8
Q ss_pred HHHHHHhcCCCceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCCCCCCCCCEEEeccCChhhhhCCCCee
Q psy16503 5 DIKKFLDESVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGKIDKILLKSWAPQRDILDHPNVK 84 (244)
Q Consensus 5 ~l~~~l~~~~~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~~~~~~~nv~~~~~~pq~~lL~h~~~~ 84 (244)
++.+.+++..+++++|+-++.... ....+.+.+.|++.+..+.+ +++ ....|. +... ..-.+.+...++|
T Consensus 16 ~l~~~~~~~g~r~lvVt~~~~~~~----~g~~~~v~~~L~~~g~~~~~-~~~--v~~~p~-~~~v--~~~~~~~~~~~~D 85 (357)
T cd08181 16 KHGEELAALGKRALIVTGKSSAKK----NGSLDDVTKALEELGIEYEI-FDE--VEENPS-LETI--MEAVEIAKKFNAD 85 (357)
T ss_pred HHHHHHHHcCCEEEEEeCCchHhh----cCcHHHHHHHHHHcCCeEEE-eCC--CCCCcC-HHHH--HHHHHHHHhcCCC
Confidence 344555543345555555444221 12345566667665554432 221 111111 0000 0112333336789
Q ss_pred EEEecCChhhHHHHHH----------------------hCCcEEecCCC
Q psy16503 85 VFISHGGFLGTTEALY----------------------SGVPIIGIPMF 111 (244)
Q Consensus 85 l~IthgG~~s~~Eal~----------------------~gvP~i~vP~~ 111 (244)
++|.=||. |+..+.- .++|++.+|-.
T Consensus 86 ~IIavGGG-SviD~aK~ia~~~~~~~~~~~~~~~~~~~~~~P~i~VPTt 133 (357)
T cd08181 86 FVIGIGGG-SPLDAAKAIAVLIKNPDLKVELYFRSKYLKALPVVAIPTT 133 (357)
T ss_pred EEEEeCCc-hHHHHHHHHHHHHhCCCcHHHHhcccccCCCCCEEEEeCC
Confidence 99998885 4444432 27899999974
No 198
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=53.17 E-value=1.2e+02 Score=24.57 Aligned_cols=156 Identities=13% Similarity=0.071 Sum_probs=75.3
Q ss_pred HhcCCCceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCC--CCC--CCCCEEEeccCChhhhhCCCCeeE
Q psy16503 10 LDESVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGEN--MSG--KIDKILLKSWAPQRDILDHPNVKV 85 (244)
Q Consensus 10 l~~~~~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~--~~~--~~~nv~~~~~~pq~~lL~h~~~~l 85 (244)
++-.++++++|..|... .. -+..|...+..+.+..+... +.. ...++.+..--.+...+ ..+++
T Consensus 5 l~l~gk~vlVvGgG~va------~r----k~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl--~~~~l 72 (205)
T TIGR01470 5 ANLEGRAVLVVGGGDVA------LR----KARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADIL--EGAFL 72 (205)
T ss_pred EEcCCCeEEEECcCHHH------HH----HHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHh--CCcEE
Confidence 44444455555555442 12 23444456666665444211 111 12255543322223345 57888
Q ss_pred EEecCChhhHHH-----HHHhCCcEEec--CCCcchhhHHHHHHHcCceeecCCCCC---CHHHHHHHHHHHhCC--hhH
Q psy16503 86 FISHGGFLGTTE-----ALYSGVPIIGI--PMFGDQKANIRVVEKAGFGVTLPYDQI---TEETVLVALRTVLGN--PSY 153 (244)
Q Consensus 86 ~IthgG~~s~~E-----al~~gvP~i~v--P~~~dQ~~na~~~~~~G~g~~l~~~~~---~~~~l~~ai~~ll~~--~~y 153 (244)
+|..-|-..+.+ |-..|+|+-.+ |-..| +..-..+..-++-+.+..+-- -...+++.|++++.. ..+
T Consensus 73 Vi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~~~g~l~iaisT~G~sP~la~~lr~~ie~~l~~~~~~~ 151 (205)
T TIGR01470 73 VIAATDDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIVDRSPVVVAISSGGAAPVLARLLRERIETLLPPSLGDL 151 (205)
T ss_pred EEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEEEcCCEEEEEECCCCCcHHHHHHHHHHHHhcchhHHHH
Confidence 888877654433 33578888443 43333 111122222234444443222 236788888888742 335
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHH
Q psy16503 154 KKRAEKVARLFQDRPMPPLDTAIYW 178 (244)
Q Consensus 154 ~~~a~~~s~~~~~~~~~~~~~a~~~ 178 (244)
.+.+.++...++..-.++.++-..|
T Consensus 152 ~~~~~~~R~~~k~~~~~~~~r~~~~ 176 (205)
T TIGR01470 152 ATLAATWRDAVKKRLPNGAARRRFW 176 (205)
T ss_pred HHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 5556666666654333444544444
No 199
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=53.00 E-value=66 Score=29.06 Aligned_cols=86 Identities=21% Similarity=0.323 Sum_probs=58.7
Q ss_pred CCEEEeccCCh----hhhhCCCCeeEEEecCChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCc-eeecCCCCCCHH
Q psy16503 64 DKILLKSWAPQ----RDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGF-GVTLPYDQITEE 138 (244)
Q Consensus 64 ~nv~~~~~~pq----~~lL~h~~~~l~IthgG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~-g~~l~~~~~~~~ 138 (244)
.++.+.. .++ ..++ .+++++|.- =+-++.-|++.|+|.+++-. |+.....+++.|+ +..++..+++.+
T Consensus 266 ~~i~~~~-d~~~~~~~~~l--~~~dl~Vg~-R~HsaI~al~~g~p~i~i~Y---~~K~~~l~~~~gl~~~~~~i~~~~~~ 338 (385)
T COG2327 266 AEILVSS-DEYAEELGGIL--AACDLIVGM-RLHSAIMALAFGVPAIAIAY---DPKVRGLMQDLGLPGFAIDIDPLDAE 338 (385)
T ss_pred cceEeec-chHHHHHHHHh--ccCceEEee-hhHHHHHHHhcCCCeEEEee---cHHHHHHHHHcCCCcccccCCCCchH
Confidence 4555544 233 3456 678887762 24578889999999999854 4455577777777 456777788899
Q ss_pred HHHHHHHHHhCC-hhHHHH
Q psy16503 139 TVLVALRTVLGN-PSYKKR 156 (244)
Q Consensus 139 ~l~~ai~~ll~~-~~y~~~ 156 (244)
.+.....+.+.+ +..+++
T Consensus 339 ~l~~~~~e~~~~~~~~~~~ 357 (385)
T COG2327 339 ILSAVVLERLTKLDELRER 357 (385)
T ss_pred HHHHHHHHHHhccHHHHhh
Confidence 998888888755 444333
No 200
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=52.90 E-value=1.3e+02 Score=25.38 Aligned_cols=94 Identities=20% Similarity=0.275 Sum_probs=56.7
Q ss_pred hHHHHHHhcCCCceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCC---CCCCCCCCEEEec-cCC---hhh
Q psy16503 4 TDIKKFLDESVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGE---NMSGKIDKILLKS-WAP---QRD 76 (244)
Q Consensus 4 ~~l~~~l~~~~~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~---~~~~~~~nv~~~~-~~p---q~~ 76 (244)
++.-+++.+.+.+.|+++.||.. +..+.. ....+.+++.++=.. .+.-.+.|+.... -+. ..+
T Consensus 119 ~eA~~~l~~~~~~~iflttGsk~---------L~~f~~-~~~~~~r~~~RvLp~~~~~~g~~~~~iia~~GPfs~e~n~a 188 (249)
T PF02571_consen 119 EEAAELLKELGGGRIFLTTGSKN---------LPPFVP-APLPGERLFARVLPTPESALGFPPKNIIAMQGPFSKELNRA 188 (249)
T ss_pred HHHHHHHhhcCCCCEEEeCchhh---------HHHHhh-cccCCCEEEEEECCCccccCCCChhhEEEEeCCCCHHHHHH
Confidence 45556665544589999999983 222333 222345777665331 1111345555432 222 236
Q ss_pred hhCCCCeeEEEec--CChhhH----HHHHHhCCcEEec
Q psy16503 77 ILDHPNVKVFISH--GGFLGT----TEALYSGVPIIGI 108 (244)
Q Consensus 77 lL~h~~~~l~Ith--gG~~s~----~Eal~~gvP~i~v 108 (244)
++.+-+++++||. ||. ++ ..|...|+|++++
T Consensus 189 l~~~~~i~~lVtK~SG~~-g~~eKi~AA~~lgi~vivI 225 (249)
T PF02571_consen 189 LFRQYGIDVLVTKESGGS-GFDEKIEAARELGIPVIVI 225 (249)
T ss_pred HHHHcCCCEEEEcCCCch-hhHHHHHHHHHcCCeEEEE
Confidence 7777899999995 666 43 4477899999998
No 201
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=51.53 E-value=46 Score=19.21 Aligned_cols=9 Identities=11% Similarity=0.449 Sum_probs=4.2
Q ss_pred HHHHHHHHH
Q psy16503 206 LDVIIALIL 214 (244)
Q Consensus 206 lDv~~~~~~ 214 (244)
+|.|+.++.
T Consensus 7 ~dfylc~l~ 15 (43)
T PF11395_consen 7 FDFYLCFLS 15 (43)
T ss_pred hHHHHHHHH
Confidence 455544433
No 202
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=51.40 E-value=37 Score=30.40 Aligned_cols=34 Identities=29% Similarity=0.484 Sum_probs=22.9
Q ss_pred hhCCCCeeEEEecCChhhHHHHH-------------------------HhCCcEEecCCC
Q psy16503 77 ILDHPNVKVFISHGGFLGTTEAL-------------------------YSGVPIIGIPMF 111 (244)
Q Consensus 77 lL~h~~~~l~IthgG~~s~~Eal-------------------------~~gvP~i~vP~~ 111 (244)
.+...++|++|.=||. |+..+. ..++|++.+|-.
T Consensus 81 ~~~~~~~D~IiaiGGG-SviD~aKaia~~~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTT 139 (379)
T TIGR02638 81 AFKASGADYLIAIGGG-SPIDTAKAIGIISNNPEFADVRSLEGVAPTKKPGVPIIAIPTT 139 (379)
T ss_pred HHHhcCCCEEEEeCCh-HHHHHHHHHHHHHhCCCCCCHHHhhCCCccCCCCCCEEEECCC
Confidence 3434678999998885 444443 135899999974
No 203
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=51.15 E-value=25 Score=26.28 Aligned_cols=11 Identities=9% Similarity=0.319 Sum_probs=4.2
Q ss_pred HHHHHHhhccc
Q psy16503 227 VRYALITYYNT 237 (244)
Q Consensus 227 ~~~~~~~~~~~ 237 (244)
+.++++|.++.
T Consensus 84 i~y~irR~~Kk 94 (122)
T PF01102_consen 84 ISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHS--
T ss_pred HHHHHHHHhcc
Confidence 34455554443
No 204
>PF11628 TCR_zetazeta: T-cell surface glycoprotein CD3 zeta chain; InterPro: IPR021663 The TCR complex of T-lymphocytes consists of either a TCR alpha/beta or TCR gamma/delta heterodimer co-expressed at the cell surface with the invariant subunits of CD3 labelled gamma, delta, epsilon, zeta, and eta []. The zeta subunit forms either homodimers or heterodimers with eta [], but eta homodimers have not been observed. The structure of the zetazeta transmembrane dimer consists of a left-handed coiled coil with polar contacts. Two aspartic acids are critical for zetazeta dimerisation and assembly with TCR []. The high affinity immunoglobulin epsilon receptor (IgE Fc receptor) subunit gamma associates with a variety of FcR alpha chains to form a functional signaling complex. The gamma subunit has a critical role in allowing the IgE Fc receptor to reach the cell surface and regulates several aspects of the immune response []. This family includes both CD3 zeta subunits and IgE Fc receptor gamma subunits. The gamma chain of the high affinity Fc receptor for IgE has significant structural homology to CD3 zeta and the related CD3 eta subunit and can facilitate T cell receptor expression and signaling in the absence of CD3 zeta and CD3 eta [].; PDB: 2HAC_B.
Probab=50.35 E-value=38 Score=19.04 Aligned_cols=20 Identities=20% Similarity=0.353 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy16503 203 YILLDVIIALILLIAAMVWS 222 (244)
Q Consensus 203 ~~~lDv~~~~~~~~~~~~~~ 222 (244)
.|-||.++++..+++.+++.
T Consensus 5 CYiLDgiL~iYgiiiT~L~~ 24 (33)
T PF11628_consen 5 CYILDGILFIYGIIITALYC 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHHHHHHH
Confidence 47789988876665555443
No 205
>COG2011 AbcD ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]
Probab=48.98 E-value=28 Score=28.62 Aligned_cols=35 Identities=20% Similarity=0.206 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy16503 201 WQYILLDVIIALILLIAAMVWSIQWLVRYALITYY 235 (244)
Q Consensus 201 ~~~~~lDv~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (244)
||+|+-||..+..+++++++.++.++..++.++..
T Consensus 186 Y~Rf~~~Vm~~~viillilVq~iQ~~Gd~l~~r~~ 220 (222)
T COG2011 186 YQRFNTDVMVVAVVILLILVQLIQSLGDRLVRRLD 220 (222)
T ss_pred HHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68899999988888888888888888887776643
No 206
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=48.42 E-value=1.3e+02 Score=23.45 Aligned_cols=85 Identities=18% Similarity=0.157 Sum_probs=44.9
Q ss_pred CCchHHHHHHhc--CCCceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCCCCCCCCCEEEeccCChhhhh
Q psy16503 1 MNETDIKKFLDE--SVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGKIDKILLKSWAPQRDIL 78 (244)
Q Consensus 1 ~~p~~l~~~l~~--~~~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~~~~~~~nv~~~~~~pq~~lL 78 (244)
++++++.++.+. ..+.+.++..|+.. -..+.+..-|...+..+....+. . ... +
T Consensus 15 l~~~~~~~~~~~l~~a~~I~i~G~G~S~-------~~A~~~~~~l~~~g~~~~~~~~~--~---------~~~------~ 70 (179)
T TIGR03127 15 IDEEELDKLADKIIKAKRIFVAGAGRSG-------LVGKAFAMRLMHLGFNVYVVGET--T---------TPS------I 70 (179)
T ss_pred CCHHHHHHHHHHHHhCCEEEEEecCHHH-------HHHHHHHHHHHhCCCeEEEeCCc--c---------cCC------C
Confidence 356666665443 12356666667652 33444555566666655543211 0 111 2
Q ss_pred CCCCeeEEEecCChhh-HHH----HHHhCCcEEecC
Q psy16503 79 DHPNVKVFISHGGFLG-TTE----ALYSGVPIIGIP 109 (244)
Q Consensus 79 ~h~~~~l~IthgG~~s-~~E----al~~gvP~i~vP 109 (244)
....+-++|++.|.+. +.+ |-..|+|++.+-
T Consensus 71 ~~~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ii~IT 106 (179)
T TIGR03127 71 KKGDLLIAISGSGETESLVTVAKKAKEIGATVAAIT 106 (179)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEE
Confidence 2234558889888532 334 445788888873
No 207
>PLN02470 acetolactate synthase
Probab=47.82 E-value=68 Score=30.50 Aligned_cols=88 Identities=19% Similarity=0.280 Sum_probs=54.4
Q ss_pred EcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCCC-C---C--CCCCEEEecc--------CChhhhhCCCCeeEE
Q psy16503 21 SMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENM-S---G--KIDKILLKSW--------APQRDILDHPNVKVF 86 (244)
Q Consensus 21 s~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~~-~---~--~~~nv~~~~~--------~pq~~lL~h~~~~l~ 86 (244)
+|||...++. +....+.+++.|++.+.+.++-+.+... + . ..+++.+..- +-...-..+.+.-++
T Consensus 2 ~~~~~~~~~~-~~~~a~~l~~~L~~~GV~~vFg~pG~~~~~l~dal~~~~~i~~i~~rhE~~A~~~Adgyar~tg~~gv~ 80 (585)
T PLN02470 2 TFQSRFAPDE-PRKGADILVEALEREGVDTVFAYPGGASMEIHQALTRSNCIRNVLCRHEQGEVFAAEGYAKASGKVGVC 80 (585)
T ss_pred CcccCCCCCc-cccHHHHHHHHHHHcCCCEEEEcCCcccHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHhCCCEEE
Confidence 4777765443 2344678899999999877877776421 1 1 1223443321 111111122456778
Q ss_pred EecCC------hhhHHHHHHhCCcEEecC
Q psy16503 87 ISHGG------FLGTTEALYSGVPIIGIP 109 (244)
Q Consensus 87 IthgG------~~s~~Eal~~gvP~i~vP 109 (244)
++|.| .+.+.||.+.++|+|++.
T Consensus 81 ~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 81 IATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred EECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 88877 457899999999999983
No 208
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=47.02 E-value=47 Score=28.25 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=24.9
Q ss_pred CCeeEEEecCChhhHHHHHH----hCCcEEecCC
Q psy16503 81 PNVKVFISHGGFLGTTEALY----SGVPIIGIPM 110 (244)
Q Consensus 81 ~~~~l~IthgG~~s~~Eal~----~gvP~i~vP~ 110 (244)
..++++|+=||=||+.-|+. .++|++++..
T Consensus 32 ~~~D~vi~iGGDGT~L~a~~~~~~~~iPilGIN~ 65 (259)
T PRK00561 32 DGADYLFVLGGDGFFVSTAANYNCAGCKVVGINT 65 (259)
T ss_pred CCCCEEEEECCcHHHHHHHHHhcCCCCcEEEEec
Confidence 45789999999999998875 5789999853
No 209
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=46.99 E-value=30 Score=23.87 Aligned_cols=20 Identities=15% Similarity=0.398 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy16503 205 LLDVIIALILLIAAMVWSIQ 224 (244)
Q Consensus 205 ~lDv~~~~~~~~~~~~~~~~ 224 (244)
.+|+++++.+++++++.++.
T Consensus 3 ~l~i~~iialiv~~iiaIvv 22 (81)
T PF00558_consen 3 SLEILAIIALIVALIIAIVV 22 (81)
T ss_dssp -----HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 35555555444444433333
No 210
>PF13941 MutL: MutL protein
Probab=46.94 E-value=2.4e+02 Score=26.17 Aligned_cols=89 Identities=12% Similarity=0.107 Sum_probs=46.8
Q ss_pred eEEEecCChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCC----CCCHHHHHHHHHHHhCChhHHHHHHH
Q psy16503 84 KVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYD----QITEETVLVALRTVLGNPSYKKRAEK 159 (244)
Q Consensus 84 ~l~IthgG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~----~~~~~~l~~ai~~ll~~~~y~~~a~~ 159 (244)
-++|.=||+.|-..++.-|-|-.-=....+ ...+.|-++-.+|+..... ....+.+.+-+..-++..+.++.+.+
T Consensus 250 llvVDIGGATTDVhSv~~~~~~~~~~~~~~-ep~~kRTVEGDLGmr~sa~~l~e~~g~~~l~~~l~~~~~~~~l~~~~~~ 328 (457)
T PF13941_consen 250 LLVVDIGGATTDVHSVAEGSPEIPGIVLKP-EPYAKRTVEGDLGMRYSAPNLLEAAGEEELRRWLPFPISEEELREYIEN 328 (457)
T ss_pred EEEEEccCcccchhhhccCCccccccccCC-cchhhhheeccccceechHHHHHhcchHHHHHHcCCcccHHHHHHHHHH
Confidence 356777888888888887777655544443 3345666666677665422 12223333322222223445555555
Q ss_pred HHHHHhCCCCChHH
Q psy16503 160 VARLFQDRPMPPLD 173 (244)
Q Consensus 160 ~s~~~~~~~~~~~~ 173 (244)
....-..-|.+..+
T Consensus 329 ~~~~p~~iP~t~~e 342 (457)
T PF13941_consen 329 RMANPDTIPQTEEE 342 (457)
T ss_pred HHhCCCCCCCCHHH
Confidence 54444444444443
No 211
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=46.11 E-value=2.5e+02 Score=26.15 Aligned_cols=134 Identities=10% Similarity=0.073 Sum_probs=77.7
Q ss_pred CchHHHHHHhcCCCceEEEEcCCCCCC------CCCCHHHHHHHHHHHhcCCCeEEEEecCCCCCCC---CCCEEEeccC
Q psy16503 2 NETDIKKFLDESVNGVIYFSMGSIIQG------KSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGK---IDKILLKSWA 72 (244)
Q Consensus 2 ~p~~l~~~l~~~~~~vI~vs~Gs~~~~------~~~~~~~~~~i~~al~~~~~~viw~~~~~~~~~~---~~nv~~~~~~ 72 (244)
+.+.+.+|+.+.+..- +--+.|+-.- ..++++.++.+++.+.+.+..+-|++.+....+. .-|....+
T Consensus 265 ~~~~l~~wl~~~p~~~-~nfL~sHDgigl~~~~glL~~~ei~~l~~~~~~~g~~~s~~~~~~~~~~~~~Y~in~t~~~-- 341 (470)
T TIGR03852 265 KTNRLADWLRKSPMKQ-FTTLDTHDGIGVVDVKDLLTDEEIDYTSEELYKVGANVKKIYSTAAYNNLDIYQINCTYYS-- 341 (470)
T ss_pred CHHHHHHHHHhCcccc-eEEeecCCCCCCccccccCCHHHHHHHHHHHHhcCCCccccccccccCCcCceeeehhhHH--
Confidence 3466788888765221 2223333221 2478999999999998888777776554322221 11222222
Q ss_pred ChhhhhCCCCeeEEEecCChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHH
Q psy16503 73 PQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTV 147 (244)
Q Consensus 73 pq~~lL~h~~~~l~IthgG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~l 147 (244)
.|+...-+....|+ ++ -..-|+|+|-+.-.---..+-..+++.|.|.-++...++.++|..++++-
T Consensus 342 ----aL~~~~~r~~~a~a----i~-~~lpGiP~iYy~~llg~~nD~~~~~rt~~~R~Inr~~~~~~~i~~~l~~~ 407 (470)
T TIGR03852 342 ----ALGDDDQAYLLARA----IQ-FFAPGIPQVYYVGLLAGKNDIELLEETKEGRNINRHYYTLEEIAEEVKRP 407 (470)
T ss_pred ----HhCCCHHHHHHHHH----HH-HcCCCCceEEechhhcCCchHHHHHhcCCCCCCCCCCCCHHHHHHHHhhH
Confidence 22111111111111 11 12368999887643333455677888899999999999999988887544
No 212
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=45.98 E-value=62 Score=26.45 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=15.9
Q ss_pred CCeeEEEe-cCChhhHHHHHH
Q psy16503 81 PNVKVFIS-HGGFLGTTEALY 100 (244)
Q Consensus 81 ~~~~l~It-hgG~~s~~Eal~ 100 (244)
..+|+||. -||.||+-|.+.
T Consensus 109 ~~ada~V~~pGG~GTleEl~e 129 (205)
T COG1611 109 RSADAFIVLPGGFGTLEELFE 129 (205)
T ss_pred HhCCEEEEeCCCcchHHHHHH
Confidence 67888888 688999977754
No 213
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=45.91 E-value=41 Score=26.17 Aligned_cols=19 Identities=26% Similarity=0.322 Sum_probs=15.8
Q ss_pred hhhHHHHHHhCCcEEecCC
Q psy16503 92 FLGTTEALYSGVPIIGIPM 110 (244)
Q Consensus 92 ~~s~~Eal~~gvP~i~vP~ 110 (244)
.+.+.||...++|+|++.-
T Consensus 75 ~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 75 LNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred HHHHHHHHHcCCCEEEEec
Confidence 4667899999999999953
No 214
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=44.87 E-value=24 Score=30.66 Aligned_cols=8 Identities=25% Similarity=0.526 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q psy16503 36 RKAFLRAF 43 (244)
Q Consensus 36 ~~~i~~al 43 (244)
++++.+.|
T Consensus 37 MK~Vme~F 44 (299)
T PF02009_consen 37 MKSVMENF 44 (299)
T ss_pred HHHHHHHH
Confidence 33333333
No 215
>PF03641 Lysine_decarbox: Possible lysine decarboxylase; InterPro: IPR005269 This entry represents a cytokinin-activating enzyme working in the direct activation pathway. It is a phosphoribohydrolase that converts inactive cytokinin nucleotides to the biologically active free-base forms [, ]. The proteins in this entry belong to the LOG family of proteins.; PDB: 1YDH_B 2Q4D_A 1RCU_C 1WEH_B 3SBX_F 3BQ9_B 2PMB_D 3GH1_D 1WEK_C 3QUA_A ....
Probab=44.26 E-value=1e+02 Score=23.10 Aligned_cols=60 Identities=22% Similarity=0.331 Sum_probs=33.1
Q ss_pred EEEeccCC-hhhhhCCCCeeEEEe-cCChhhHHHHHHh---------CC-cEEecCC--Ccchh-hHHHHHHHcCc
Q psy16503 66 ILLKSWAP-QRDILDHPNVKVFIS-HGGFLGTTEALYS---------GV-PIIGIPM--FGDQK-ANIRVVEKAGF 126 (244)
Q Consensus 66 v~~~~~~p-q~~lL~h~~~~l~It-hgG~~s~~Eal~~---------gv-P~i~vP~--~~dQ~-~na~~~~~~G~ 126 (244)
...++.+. ...+|. ..+++||. -||.||+.|.... .+ |++++-. +.|.. ...+++.+.|.
T Consensus 37 ~~~~~~~~~Rk~~m~-~~sda~I~lPGG~GTl~El~~~~~~~~l~~~~~~Piil~~~~g~w~~l~~~l~~~~~~g~ 111 (133)
T PF03641_consen 37 LIIVDDMFERKEIMI-ESSDAFIALPGGIGTLDELFEALTLMQLGRHNKVPIILLNIDGFWDPLLEFLDRMIEEGF 111 (133)
T ss_dssp EEEESSHHHHHHHHH-HHESEEEEES-SHHHHHHHHHHHHHHHTTSSTS-EEEEEECGGCCHHHHHHHHHHHHTTS
T ss_pred eeEeCChHHHHHHHH-HhCCEEEEEecCCchHHHHHHHHHHHhhccccCCCEEEeCCcchHHHHHHHHHHHHHCCC
Confidence 33444443 444544 56677665 7889999998653 34 9988742 33322 23345555554
No 216
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=44.08 E-value=1.6e+02 Score=24.97 Aligned_cols=45 Identities=16% Similarity=0.287 Sum_probs=29.0
Q ss_pred hhhCCCCeeEEEecCChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCc
Q psy16503 76 DILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGF 126 (244)
Q Consensus 76 ~lL~h~~~~l~IthgG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~ 126 (244)
+++ .+++++|+.= +-+..-|+.+|+|.++++. ++.....+.+.|+
T Consensus 246 ~~i--~~~~~vI~~R-lH~~I~A~~~gvP~i~i~y---~~K~~~~~~~~g~ 290 (298)
T TIGR03609 246 GLF--ASARLVIGMR-LHALILAAAAGVPFVALSY---DPKVRAFAADAGV 290 (298)
T ss_pred HHH--hhCCEEEEec-hHHHHHHHHcCCCEEEeec---cHHHHHHHHHhCC
Confidence 456 6799999832 2246678889999998853 2344444555554
No 217
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=44.06 E-value=50 Score=25.96 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=25.0
Q ss_pred ceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEe
Q psy16503 16 GVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKW 54 (244)
Q Consensus 16 ~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~ 54 (244)
..+|+++||... .+.+.++..+.++.+.+..-++..
T Consensus 2 ~~vyl~LGSNlg---d~~~~l~~A~~~L~~~~~~~v~~~ 37 (160)
T COG0801 2 TRVYLGLGSNLG---DRLKQLRAALAALDALADIRVVAV 37 (160)
T ss_pred cEEEEEecCCCC---CHHHHHHHHHHHHHhCCCceEEEe
Confidence 368999999965 345667778888887775324443
No 218
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=43.33 E-value=69 Score=22.43 Aligned_cols=46 Identities=24% Similarity=0.172 Sum_probs=29.3
Q ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q psy16503 195 SLELYWWQYILLDVIIALILLIAAMVWSIQWLVRYALITYYNTVDDKK 242 (244)
Q Consensus 195 ~~~~~~~~~~~lDv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (244)
+.-|..++.|.-|...++..++.++.++ .+....+..|.+-.+-||
T Consensus 13 ~~~~~~i~~y~~d~~~l~gLv~~a~afi--~Va~~~i~~y~eir~gK~ 58 (87)
T PF11190_consen 13 GGIMETIKGYAKDGVLLLGLVLAAAAFI--VVAKAAISTYNEIRDGKK 58 (87)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHcCcc
Confidence 3467788899999987766555544332 345566666666655554
No 219
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=43.23 E-value=1.8e+02 Score=24.66 Aligned_cols=81 Identities=20% Similarity=0.320 Sum_probs=48.9
Q ss_pred CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCC--eEEEEecCC--C------CCCCCCCEEEe--ccC-C-hhhhhCC
Q psy16503 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQ--RVIWKWEGE--N------MSGKIDKILLK--SWA-P-QRDILDH 80 (244)
Q Consensus 15 ~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~--~viw~~~~~--~------~~~~~~nv~~~--~~~-p-q~~lL~h 80 (244)
.+.|+.+.|+.. +..|...+. +++.++=.. . +.-.+.++.-. +|. + ...+|..
T Consensus 128 ~~rVflt~G~~~-------------l~~f~~~~~~~~~~~Rvlp~~~~~~~~~~~~~p~~~Iia~~GPfs~~~n~all~q 194 (257)
T COG2099 128 GRRVFLTTGRQN-------------LAHFVAADAHSHVLARVLPPPDVLAKCEDLGVPPARIIAMRGPFSEEDNKALLEQ 194 (257)
T ss_pred CCcEEEecCccc-------------hHHHhcCcccceEEEEEcCchHHHHHHHhcCCChhhEEEecCCcChHHHHHHHHH
Confidence 378999999882 344444443 455554221 1 11123455444 342 2 3367777
Q ss_pred CCeeEEEec--CChhhHH----HHHHhCCcEEec
Q psy16503 81 PNVKVFISH--GGFLGTT----EALYSGVPIIGI 108 (244)
Q Consensus 81 ~~~~l~Ith--gG~~s~~----Eal~~gvP~i~v 108 (244)
-+++++||. ||.|..+ -|...|+|+|++
T Consensus 195 ~~id~vItK~SG~~Gg~~~Ki~aA~eLgi~VI~I 228 (257)
T COG2099 195 YRIDVVVTKNSGGAGGTYEKIEAARELGIPVIMI 228 (257)
T ss_pred hCCCEEEEccCCcccCcHHHHHHHHHcCCcEEEE
Confidence 799999995 6665544 477899999998
No 220
>PRK06270 homoserine dehydrogenase; Provisional
Probab=42.83 E-value=69 Score=28.26 Aligned_cols=58 Identities=16% Similarity=0.218 Sum_probs=39.9
Q ss_pred ChhhhhCCCCeeEEEe------cCC---hhhHHHHHHhCCcEEe---cCCCcchhhHHHHHHHcCceeec
Q psy16503 73 PQRDILDHPNVKVFIS------HGG---FLGTTEALYSGVPIIG---IPMFGDQKANIRVVEKAGFGVTL 130 (244)
Q Consensus 73 pq~~lL~h~~~~l~It------hgG---~~s~~Eal~~gvP~i~---vP~~~dQ~~na~~~~~~G~g~~l 130 (244)
+..+++.++..+++|- |+| ..-+.+|+.+|+++++ -|+...-..-.+...+.|..+..
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~~~~~ 149 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGVRFRY 149 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCCEEEE
Confidence 4567787778888776 443 4456899999999999 47744334455556667776654
No 221
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=41.92 E-value=43 Score=28.56 Aligned_cols=40 Identities=15% Similarity=0.227 Sum_probs=23.9
Q ss_pred CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcC-C-CeEEEEecC
Q psy16503 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQI-P-QRVIWKWEG 56 (244)
Q Consensus 15 ~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~-~-~~viw~~~~ 56 (244)
+.++++||||.... --...+..+.+.++.. | ..|.|.+..
T Consensus 1 KAIllvsFGTs~~~--ar~~ti~~ie~~~~~~fp~~~V~~AfTS 42 (262)
T PF06180_consen 1 KAILLVSFGTSYPE--AREKTIDAIEKAVREAFPDYDVRRAFTS 42 (262)
T ss_dssp EEEEEEE---S-CC--CCHHHHHHHHHHHHHCSTTSEEEEEES-
T ss_pred CEEEEEeCCCCCHH--HHHHHHHHHHHHHHHHCCCCcEEEEchH
Confidence 36899999999652 1233677777777654 5 488998764
No 222
>PRK13278 purP 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase; Provisional
Probab=41.63 E-value=1.5e+02 Score=26.48 Aligned_cols=117 Identities=19% Similarity=0.303 Sum_probs=64.6
Q ss_pred CchHHHHHHhcCC-CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCCC---C--CCCCCEEEec-c---
Q psy16503 2 NETDIKKFLDESV-NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENM---S--GKIDKILLKS-W--- 71 (244)
Q Consensus 2 ~p~~l~~~l~~~~-~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~~---~--~~~~nv~~~~-~--- 71 (244)
+.+++.+.+++.+ +.+-.-++||+.. + .+++++++.+.+.+..+.+... + ...+++...+ |
T Consensus 3 ~~~~~~~~~~~y~~~~~~i~~~~shsa---L------~I~~gAkeeGf~ti~v~~~~~~~~y~~~~~~De~i~v~~~~di 73 (358)
T PRK13278 3 NKEEILEILKKYDLDNITIATIGSHSS---L------QILKGAKKEGFRTIAICKKKREVFYKRFPVADEFIIVDDFSDI 73 (358)
T ss_pred cHHHHHHHHHhcCcccceEEEEecccH---H------HHHHHHHHCCCeEEEEEeCCCccccccccccceEEEEcchhhh
Confidence 4567899999876 5567888899843 2 2678888888866665544321 1 1224555544 4
Q ss_pred CChh--hhhCCCCeeEEEecCChhhH--HHHHH-hCCcEEecC----CCcchhhHHHHHHHcCcee
Q psy16503 72 APQR--DILDHPNVKVFISHGGFLGT--TEALY-SGVPIIGIP----MFGDQKANIRVVEKAGFGV 128 (244)
Q Consensus 72 ~pq~--~lL~h~~~~l~IthgG~~s~--~Eal~-~gvP~i~vP----~~~dQ~~na~~~~~~G~g~ 128 (244)
.+.. .-|. ..--++|+||....+ +|.+. .|+|+..-+ ...|...--+.+.++|+-.
T Consensus 74 ~~~~~~~~l~-~~~~iiIp~gs~v~y~~~d~l~~~~~p~~gn~~~l~~e~dK~~~k~~L~~aGIp~ 138 (358)
T PRK13278 74 LNEAVQEKLR-EMNAILIPHGSFVAYLGLENVEKFKVPMFGNREILRWEADRDKERKLLEEAGIRI 138 (358)
T ss_pred cCHHHHHHHh-hcCcEEEeCCCcceeecHHHHHHCCCCcCCCHHHHHHhcCHHHHHHHHHHcCCCC
Confidence 2222 1222 222358889753322 33333 777743322 2345455445566666654
No 223
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=41.62 E-value=43 Score=25.81 Aligned_cols=24 Identities=13% Similarity=0.206 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy16503 208 VIIALILLIAAMVWSIQWLVRYAL 231 (244)
Q Consensus 208 v~~~~~~~~~~~~~~~~~~~~~~~ 231 (244)
|+++++.++++++.++|.++|.++
T Consensus 121 i~~~i~g~ll~i~~giy~~~r~~~ 144 (145)
T PF10661_consen 121 ILLSIGGILLAICGGIYVVLRKVW 144 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444455555667776676553
No 224
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=41.46 E-value=38 Score=26.68 Aligned_cols=8 Identities=13% Similarity=0.372 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q psy16503 221 WSIQWLVR 228 (244)
Q Consensus 221 ~~~~~~~~ 228 (244)
.++|.++|
T Consensus 108 ~i~yfvir 115 (163)
T PF06679_consen 108 AILYFVIR 115 (163)
T ss_pred HHHHHHHH
Confidence 33344444
No 225
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=41.09 E-value=1.2e+02 Score=27.99 Aligned_cols=87 Identities=21% Similarity=0.324 Sum_probs=64.7
Q ss_pred CCCEEEeccC----Chhh---------hhCCCCeeEEEecCCh--------------hhHHHHHHhCCcEEec-----CC
Q psy16503 63 IDKILLKSWA----PQRD---------ILDHPNVKVFISHGGF--------------LGTTEALYSGVPIIGI-----PM 110 (244)
Q Consensus 63 ~~nv~~~~~~----pq~~---------lL~h~~~~l~IthgG~--------------~s~~Eal~~gvP~i~v-----P~ 110 (244)
.++..-++|+ |..+ +-.|+...++||--|. -++.|.=.-|+|.+++ |.
T Consensus 114 ~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~ELk~igKPFvillNs~~P~ 193 (492)
T PF09547_consen 114 GPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEELKEIGKPFVILLNSTKPY 193 (492)
T ss_pred CceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHHHHhCCCEEEEEeCCCCC
Confidence 3455567884 5443 2357888999998773 2467777899999887 66
Q ss_pred CcchhhHHHHHHHc-Cceee-cCCCCCCHHHHHHHHHHHhC
Q psy16503 111 FGDQKANIRVVEKA-GFGVT-LPYDQITEETVLVALRTVLG 149 (244)
Q Consensus 111 ~~dQ~~na~~~~~~-G~g~~-l~~~~~~~~~l~~ai~~ll~ 149 (244)
..+-..-+..+++. ++.+. ++..+++.+++...++++|.
T Consensus 194 s~et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~vLy 234 (492)
T PF09547_consen 194 SEETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEVLY 234 (492)
T ss_pred CHHHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHHHh
Confidence 66767777777654 88765 78889999999999999986
No 226
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=41.06 E-value=34 Score=32.80 Aligned_cols=88 Identities=19% Similarity=0.161 Sum_probs=43.8
Q ss_pred CChhhhhCCCCeeEEEecC-----ChhhHHHHHHhCCcEEecCCCc-chhhHHH--HHHHcCceeecCCCCCCHHHHHHH
Q psy16503 72 APQRDILDHPNVKVFISHG-----GFLGTTEALYSGVPIIGIPMFG-DQKANIR--VVEKAGFGVTLPYDQITEETVLVA 143 (244)
Q Consensus 72 ~pq~~lL~h~~~~l~Ithg-----G~~s~~Eal~~gvP~i~vP~~~-dQ~~na~--~~~~~G~g~~l~~~~~~~~~l~~a 143 (244)
+|..+++ ..|++-|--. |+ |-.|++++|||.|.--+-+ -++.+-. .-...|+-++ +..+-+.++..+.
T Consensus 461 l~Y~dfv--~GcdLgvFPSYYEPWGY-TPlE~~a~gVPsITTnLsGFG~~~~~~~~~~~~~GV~Vv-dR~~~n~~e~v~~ 536 (633)
T PF05693_consen 461 LDYYDFV--RGCDLGVFPSYYEPWGY-TPLECTAFGVPSITTNLSGFGCWMQEHIEDPEEYGVYVV-DRRDKNYDESVNQ 536 (633)
T ss_dssp S-HHHHH--HHSSEEEE--SSBSS-H-HHHHHHHTT--EEEETTBHHHHHHHTTS-HHGGGTEEEE--SSSS-HHHHHHH
T ss_pred CCHHHHh--ccCceeeeccccccccC-ChHHHhhcCCceeeccchhHHHHHHHhhccCcCCcEEEE-eCCCCCHHHHHHH
Confidence 4556666 5566544433 55 8999999999999987632 1111110 1123455444 4444466666666
Q ss_pred HHHHhCC---------hhHHHHHHHHHHH
Q psy16503 144 LRTVLGN---------PSYKKRAEKVARL 163 (244)
Q Consensus 144 i~~ll~~---------~~y~~~a~~~s~~ 163 (244)
|.+.|.+ ...|+++.++|+.
T Consensus 537 la~~l~~f~~~~~rqri~~Rn~ae~LS~~ 565 (633)
T PF05693_consen 537 LADFLYKFCQLSRRQRIIQRNRAERLSDL 565 (633)
T ss_dssp HHHHHHHHHT--HHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 6555532 1245555555543
No 227
>TIGR00732 dprA DNA protecting protein DprA. Disruption of this gene in both Haemophilus influenzae and Helicobacter pylori drastically reduces the efficiency of transformation with exogenous DNA, but with different levels of effect on chromosomal (linear) and plasmid (circular) DNA. This difference suggests the DprA is not active in recombination, and it has been shown not to affect DNA binding, leaving the intermediate step in natural transformation, DNA processing. In Strep. pneumoniae, inactivation of dprA had no effect on the uptake of DNA. All of these data indicated that DprA is required at a later stage in transformation. Subsequently DprA and RecA were both shown in S. pneumoniae to be required to protect incoming ssDNA from immediate degradation. Role of DprA in non-transformable species is not known. The gene symbol smf was assigned in E. coli, but without assignment of function.
Probab=40.90 E-value=66 Score=26.54 Aligned_cols=39 Identities=13% Similarity=0.148 Sum_probs=29.2
Q ss_pred hhhHHHHHHhCCcEEecCCC--cchhhHHHHHHHcCceeec
Q psy16503 92 FLGTTEALYSGVPIIGIPMF--GDQKANIRVVEKAGFGVTL 130 (244)
Q Consensus 92 ~~s~~Eal~~gvP~i~vP~~--~dQ~~na~~~~~~G~g~~l 130 (244)
..+..+|+..|+|+.++|-. ..+..-+..+.+.|+....
T Consensus 171 l~ta~~A~~~gr~v~~~pg~~~~~~~~G~~~Li~~GA~~i~ 211 (220)
T TIGR00732 171 LITARYALEQGREVFAYPGDLNSPESDGCHKLIEQGAALIT 211 (220)
T ss_pred HHHHHHHHHhCCcEEEEcCCCCCccchHHHHHHHCCCEEEC
Confidence 57778889999999999863 3355556777788976655
No 228
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=40.87 E-value=1.1e+02 Score=23.17 Aligned_cols=29 Identities=21% Similarity=0.374 Sum_probs=21.8
Q ss_pred CeeEEEecCC------hhhHHHHHHhCCcEEecCC
Q psy16503 82 NVKVFISHGG------FLGTTEALYSGVPIIGIPM 110 (244)
Q Consensus 82 ~~~l~IthgG------~~s~~Eal~~gvP~i~vP~ 110 (244)
+..++++|+| .+.+.+|...++|+|.+.-
T Consensus 59 ~~~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 59 KPGVVLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred CCEEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 3556777754 4578889999999999853
No 229
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=39.77 E-value=64 Score=25.35 Aligned_cols=48 Identities=4% Similarity=0.035 Sum_probs=30.4
Q ss_pred CCchHHHHHHhcCCCceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEe
Q psy16503 1 MNETDIKKFLDESVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKW 54 (244)
Q Consensus 1 ~~p~~l~~~l~~~~~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~ 54 (244)
++|+++.+.+.++++|+|++..|.... -..+.+.++++. ++..|+...
T Consensus 15 ~~p~~aa~lLk~AKRPvIivG~ga~~~---~a~e~l~~laEk---lgiPVvtT~ 62 (162)
T TIGR00315 15 VSPKLVAMMIKRAKRPLLIVGPENLED---EEKELIVKFIEK---FDLPVVATA 62 (162)
T ss_pred cCHHHHHHHHHcCCCcEEEECCCcCcc---cHHHHHHHHHHH---HCCCEEEcC
Confidence 368899999999888888887776521 123444444444 455655544
No 230
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=39.52 E-value=2.5e+02 Score=24.24 Aligned_cols=82 Identities=16% Similarity=0.106 Sum_probs=43.3
Q ss_pred HHhcCCCceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCCCCCCCCCEEEeccCChhhhhCCCCeeEEEe
Q psy16503 9 FLDESVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGKIDKILLKSWAPQRDILDHPNVKVFIS 88 (244)
Q Consensus 9 ~l~~~~~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~~~~~~~nv~~~~~~pq~~lL~h~~~~l~It 88 (244)
.+.++.+.+.++..|++. ...+.+...|...+..++...+. ..... ... .+....+-++|+
T Consensus 42 ~l~~a~~~I~i~G~G~S~-------~~a~~~~~~l~~~g~~~~~~~~~-~~~~~-----~~~------~~~~~d~~I~iS 102 (326)
T PRK10892 42 KMFWCKGKVVVMGMGKSG-------HIGRKMAATFASTGTPSFFVHPG-EAAHG-----DLG------MVTPQDVVIAIS 102 (326)
T ss_pred HHHhcCCeEEEEeCcHhH-------HHHHHHHHHHhcCCceeEEeChH-Hhhcc-----ccc------cCCCCCEEEEEe
Confidence 343443467788888763 33444555565666655442221 00000 001 122244558899
Q ss_pred cCCh-h----hHHHHHHhCCcEEecC
Q psy16503 89 HGGF-L----GTTEALYSGVPIIGIP 109 (244)
Q Consensus 89 hgG~-~----s~~Eal~~gvP~i~vP 109 (244)
+.|. . .+..|-..|+|++++-
T Consensus 103 ~sG~t~~~~~~~~~ak~~g~~vi~iT 128 (326)
T PRK10892 103 NSGESSEILALIPVLKRLHVPLICIT 128 (326)
T ss_pred CCCCCHHHHHHHHHHHHCCCcEEEEE
Confidence 9884 2 3444455899999983
No 231
>PRK10586 putative oxidoreductase; Provisional
Probab=39.05 E-value=1.6e+02 Score=26.26 Aligned_cols=31 Identities=29% Similarity=0.397 Sum_probs=21.5
Q ss_pred CCeeEEEecCChhhHHHH----HHhCCcEEecCCC
Q psy16503 81 PNVKVFISHGGFLGTTEA----LYSGVPIIGIPMF 111 (244)
Q Consensus 81 ~~~~l~IthgG~~s~~Ea----l~~gvP~i~vP~~ 111 (244)
.++|++|.=||..++=-| ...++|++.+|..
T Consensus 85 ~~~d~iiavGGGs~iD~aK~~a~~~~~p~i~vPT~ 119 (362)
T PRK10586 85 DDRQVVIGVGGGALLDTAKALARRLGLPFVAIPTI 119 (362)
T ss_pred cCCCEEEEecCcHHHHHHHHHHhhcCCCEEEEeCC
Confidence 467999998885433322 2348999999963
No 232
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=38.50 E-value=35 Score=29.70 Aligned_cols=68 Identities=13% Similarity=0.104 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecCCCCCCCCCCEEEeccCChhhhhCCCCeeEEEecCChhhHHHHHHh----CCcEEec
Q psy16503 33 SDKRKAFLRAFEQIPQRVIWKWEGENMSGKIDKILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYS----GVPIIGI 108 (244)
Q Consensus 33 ~~~~~~i~~al~~~~~~viw~~~~~~~~~~~~nv~~~~~~pq~~lL~h~~~~l~IthgG~~s~~Eal~~----gvP~i~v 108 (244)
.+.+..+.+.+++.+..+.+...... ..+.. . .+ .+.- ..++++|+-||=||+.+++.. ++|++++
T Consensus 18 ~~~~~~i~~~L~~~g~~v~v~~~~~~--~~~~~----~-~~-~~~~--~~~d~vi~~GGDGT~l~~~~~~~~~~~pv~gi 87 (305)
T PRK02645 18 KEAAERCAKQLEARGCKVLMGPSGPK--DNPYP----V-FL-ASAS--ELIDLAIVLGGDGTVLAAARHLAPHDIPILSV 87 (305)
T ss_pred HHHHHHHHHHHHHCCCEEEEecCchh--hcccc----c-hh-hccc--cCcCEEEEECCcHHHHHHHHHhccCCCCEEEE
Confidence 45677777777777776555332111 11100 0 11 1111 468999999999999999864 7899988
Q ss_pred CC
Q psy16503 109 PM 110 (244)
Q Consensus 109 P~ 110 (244)
..
T Consensus 88 n~ 89 (305)
T PRK02645 88 NV 89 (305)
T ss_pred ec
Confidence 65
No 233
>PF11057 Cortexin: Cortexin of kidney; InterPro: IPR020066 Cortexin is a neuron-specific, 82-residue membrane protein which is found especially in vertebrate brain cortex tissue. It may mediate extracellular or intracellular signalling of cortical neurons during forebrain development. Cortexin is present at significant levels in the foetal brain, suggesting that it may be important to neurons of both the developing and adult cerebral cortex. Cortexin has a conserved single membrane-spanning region in the middle of each sequence []. In humans, there is selective expression of Cortexin 3 (CTXN3) in the kidney as well as the brain []. This entry contains Cortexins 1, 2 and 3.; GO: 0031224 intrinsic to membrane
Probab=38.18 E-value=55 Score=22.18 Aligned_cols=30 Identities=20% Similarity=0.017 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q psy16503 210 IALILLIAAMVWSIQWLVRYALITYYNTVD 239 (244)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (244)
+|++++.++..+.+.++.|.++-.|..+-+
T Consensus 32 aFV~~L~~fL~~liVRCfrIllDPYssmPt 61 (81)
T PF11057_consen 32 AFVGLLCLFLGLLIVRCFRILLDPYSSMPT 61 (81)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcChhhcCCc
Confidence 344444444445666777776655555433
No 234
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=37.72 E-value=3.6e+02 Score=25.77 Aligned_cols=138 Identities=14% Similarity=0.172 Sum_probs=70.0
Q ss_pred CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEec-CCCCCCCCCCEEEeccCChhhhhCCCCeeEEEecCChh
Q psy16503 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWE-GENMSGKIDKILLKSWAPQRDILDHPNVKVFISHGGFL 93 (244)
Q Consensus 15 ~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~-~~~~~~~~~nv~~~~~~pq~~lL~h~~~~l~IthgG~~ 93 (244)
.+.|.|-+||.. .....++..+.|+.++..+-..+- .+.. |+. +..++.+.+ ...+++||.-+|.-
T Consensus 410 ~~~v~i~~gs~s-----d~~~~~~~~~~l~~~g~~~~~~v~sahr~---~~~--~~~~~~~~~---~~~~~v~i~~ag~~ 476 (577)
T PLN02948 410 TPLVGIIMGSDS-----DLPTMKDAAEILDSFGVPYEVTIVSAHRT---PER--MFSYARSAH---SRGLQVIIAGAGGA 476 (577)
T ss_pred CCeEEEEECchh-----hHHHHHHHHHHHHHcCCCeEEEEECCccC---HHH--HHHHHHHHH---HCCCCEEEEEcCcc
Confidence 466777777772 356778888888887754322222 1221 111 011111111 14567899877743
Q ss_pred hHHH---HHHhCCcEEecCCCcc---hhhHHHHHHHc--Cceee-cCCC-CCCHHHHHHHHHHHhCChhHHHHHHHHHHH
Q psy16503 94 GTTE---ALYSGVPIIGIPMFGD---QKANIRVVEKA--GFGVT-LPYD-QITEETVLVALRTVLGNPSYKKRAEKVARL 163 (244)
Q Consensus 94 s~~E---al~~gvP~i~vP~~~d---Q~~na~~~~~~--G~g~~-l~~~-~~~~~~l~~ai~~ll~~~~y~~~a~~~s~~ 163 (244)
.-.- |...-+|+|++|.-.. =.+-...+... |+.+. +..+ ..+..-+...|-. +.|+..+++++...+.
T Consensus 477 ~~l~~~~a~~t~~pvi~vp~~~~~~~g~~~l~s~~~~p~g~pv~~v~i~~~~~aa~~a~~i~~-~~~~~~~~~~~~~~~~ 555 (577)
T PLN02948 477 AHLPGMVASMTPLPVIGVPVKTSHLDGLDSLLSIVQMPRGVPVATVAIGNATNAGLLAVRMLG-ASDPDLLDKMEAYQED 555 (577)
T ss_pred ccchHHHhhccCCCEEEcCCCCCCCCcHHHHHHHhcCCCCCeEEEEecCChHHHHHHHHHHHh-cCCHHHHHHHHHHHHH
Confidence 2222 2335689999998432 22222334445 54322 2222 2233334433322 3567777777777666
Q ss_pred HhC
Q psy16503 164 FQD 166 (244)
Q Consensus 164 ~~~ 166 (244)
+++
T Consensus 556 ~~~ 558 (577)
T PLN02948 556 MRD 558 (577)
T ss_pred HHH
Confidence 654
No 235
>cd08191 HHD 6-hydroxyhexanoate dehydrogenase (HHD) catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. 6-hydroxyhexanoate dehydrogenase (HHD). The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate. Some bacteria can grow on cyclic ketones, cyclohexylamine, and alcohols as sole carbon source. Cyclohexylamine is an insecticide and antiseptic in various industries and is considered a possible environmental pollutant. The degradation of these chemical compounds are through the cyclohexanol and cyclohexanone biological oxidation pathway. The intermediates of this pathway include cyclohexanol, cyclohexanone, e-caprolactone, 6-hydroxyhexanoate, 6-oxohexanoate and adipate. The 6-hydroxyhexanoate dehydrogenase catalyzes the oxidation of 6-hydroxyhexanoate to 6-oxohexanoate.
Probab=37.24 E-value=1.3e+02 Score=26.93 Aligned_cols=95 Identities=12% Similarity=0.117 Sum_probs=50.3
Q ss_pred HHHHHHhcCCCceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCCCCCCCCCEEEeccCChhhhhCCCCee
Q psy16503 5 DIKKFLDESVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGKIDKILLKSWAPQRDILDHPNVK 84 (244)
Q Consensus 5 ~l~~~l~~~~~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~~~~~~~nv~~~~~~pq~~lL~h~~~~ 84 (244)
++.+++....+++++|+ |.... .....+.+.+.|++.+..+.+ +++.+ ++.|.. .+.. ..+.+...++|
T Consensus 13 ~l~~~~~~~g~~~livt-~~~~~----~~~~~~~v~~~L~~~~~~~~~-f~~v~-~~~~~~-~v~~---~~~~~~~~~~D 81 (386)
T cd08191 13 QLPRLAARLGSRALIVT-DERMA----GTPVFAELVQALAAAGVEVEV-FDGVL-PDLPRS-ELCD---AASAAARAGPD 81 (386)
T ss_pred HHHHHHHHcCCeEEEEE-Ccchh----hcchHHHHHHHHHHcCCeEEE-ECCCC-CCcCHH-HHHH---HHHHHHhcCCC
Confidence 45556655434566666 44322 124566777788776665554 33221 111111 1111 12333336889
Q ss_pred EEEecCChhhHHHH---HH--h------------------CCcEEecCCC
Q psy16503 85 VFISHGGFLGTTEA---LY--S------------------GVPIIGIPMF 111 (244)
Q Consensus 85 l~IthgG~~s~~Ea---l~--~------------------gvP~i~vP~~ 111 (244)
.+|.=||. |+..+ ++ . ++|++.+|..
T Consensus 82 ~IIaiGGG-S~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTt 130 (386)
T cd08191 82 VIIGLGGG-SCIDLAKIAGLLLAHGGDVRDYYGEFKVPGPVLPLIAVPTT 130 (386)
T ss_pred EEEEeCCc-hHHHHHHHHHHHHhCCCCHHHHhCccccCCCCCCEEEEeCC
Confidence 99998885 33332 11 1 7899999974
No 236
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=37.22 E-value=2.1e+02 Score=24.70 Aligned_cols=58 Identities=14% Similarity=0.105 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecCCCCC-CCCCCEEEeccCChhhhhCCCCeeEEEecCC
Q psy16503 33 SDKRKAFLRAFEQIPQRVIWKWEGENMS-GKIDKILLKSWAPQRDILDHPNVKVFISHGG 91 (244)
Q Consensus 33 ~~~~~~i~~al~~~~~~viw~~~~~~~~-~~~~nv~~~~~~pq~~lL~h~~~~l~IthgG 91 (244)
...+..+.+++++++..|.+..|..... ..... ...+..=..-.-.+|+.++++.|+|
T Consensus 143 ~~~~~pi~~~a~~~gvpv~ihtG~~~~~~~~~~~-~~~p~~~~~va~~fP~l~IVl~H~G 201 (293)
T COG2159 143 DPRLYPIYEAAEELGVPVVIHTGAGPGGAGLEKG-HSDPLYLDDVARKFPELKIVLGHMG 201 (293)
T ss_pred ChHHHHHHHHHHHcCCCEEEEeCCCCCCcccccC-CCCchHHHHHHHHCCCCcEEEEecC
Confidence 4456778888888888777766542211 11110 0111111122334599999999999
No 237
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=37.11 E-value=66 Score=23.95 Aligned_cols=38 Identities=16% Similarity=0.369 Sum_probs=25.2
Q ss_pred CceEEEEcCCCCCCCCCCHHHHHHHHHHHhc-CCC-eEEEEec
Q psy16503 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQ-IPQ-RVIWKWE 55 (244)
Q Consensus 15 ~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~-~~~-~viw~~~ 55 (244)
++++++++||... -..+.+..+.+.+++ .|. .|-|.+-
T Consensus 1 ~aillv~fGS~~~---~~~~~~~~i~~~l~~~~p~~~V~~aft 40 (127)
T cd03412 1 KAILLVSFGTSYP---TAEKTIDAIEDKVRAAFPDYEVRWAFT 40 (127)
T ss_pred CeEEEEeCCCCCH---HHHHHHHHHHHHHHHHCCCCeEEEEec
Confidence 3789999999954 234566777777743 454 6666654
No 238
>PF15024 Glyco_transf_18: Glycosyltransferase family 18
Probab=36.98 E-value=1.3e+02 Score=28.58 Aligned_cols=86 Identities=22% Similarity=0.221 Sum_probs=54.7
Q ss_pred CCCCCEEEeccCChh---hhhCCCCeeEEEecCC---hhhHHHHHHhCCcEEec----CC-------Cc---------ch
Q psy16503 61 GKIDKILLKSWAPQR---DILDHPNVKVFISHGG---FLGTTEALYSGVPIIGI----PM-------FG---------DQ 114 (244)
Q Consensus 61 ~~~~nv~~~~~~pq~---~lL~h~~~~l~IthgG---~~s~~Eal~~gvP~i~v----P~-------~~---------dQ 114 (244)
..|.-|.=.+.+++. .+| .++++||-=|. .-+-.||+++|+|.|-- |. |. .|
T Consensus 319 ~~P~~V~NHG~l~~~ef~~lL--~~akvfiGlGfP~EgPaPlEAia~G~vFlNp~~~pp~s~~n~~ff~~KPt~r~~~SQ 396 (559)
T PF15024_consen 319 NVPSFVKNHGILSGDEFQQLL--RKAKVFIGLGFPYEGPAPLEAIANGCVFLNPRFNPPHSRLNTEFFKGKPTLREWTSQ 396 (559)
T ss_pred ccchhhhhcCcCCHHHHHHHH--HhhhEeeecCCCCCCCChHHHHHcCCccccccCCCCCcccccccccCCCCcceeccC
Confidence 345444445555654 567 78999998876 35899999999987653 21 11 12
Q ss_pred hhHHHHHH-HcCceeecCCCCCCHHHHHHHHHHHhCCh
Q psy16503 115 KANIRVVE-KAGFGVTLPYDQITEETVLVALRTVLGNP 151 (244)
Q Consensus 115 ~~na~~~~-~~G~g~~l~~~~~~~~~l~~ai~~ll~~~ 151 (244)
+- +++ ..|---+...+--+.+++++||+++|+++
T Consensus 397 hP---Y~e~~iG~PhVytVd~~n~~~v~~Avk~il~~~ 431 (559)
T PF15024_consen 397 HP---YAEEFIGEPHVYTVDINNSTEVEAAVKAILATP 431 (559)
T ss_pred Ch---HHHhhCCCCeEEEEcCCCHHHHHHHHHHHHhcC
Confidence 22 223 23444444334447899999999999763
No 239
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=36.07 E-value=2.6e+02 Score=23.34 Aligned_cols=84 Identities=19% Similarity=0.252 Sum_probs=52.1
Q ss_pred HHHHHHhcCCCceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCCCCCCCCCEEEeccCChhhhhCCCCee
Q psy16503 5 DIKKFLDESVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGKIDKILLKSWAPQRDILDHPNVK 84 (244)
Q Consensus 5 ~l~~~l~~~~~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~~~~~~~nv~~~~~~pq~~lL~h~~~~ 84 (244)
.+.+|+.. .++++||-..|... ...+..+.+.+++++++..+..... +++ + .+.| ..++
T Consensus 23 ~~~~~~~~-~~~v~fIPtAs~~~---~~~~y~~~~~~af~~lG~~v~~l~~-------~~d-------~-~~~l--~~ad 81 (233)
T PRK05282 23 LIAELLAG-RRKAVFIPYAGVTQ---SWDDYTAKVAEALAPLGIEVTGIHR-------VAD-------P-VAAI--ENAE 81 (233)
T ss_pred HHHHHHcC-CCeEEEECCCCCCC---CHHHHHHHHHHHHHHCCCEEEEecc-------chh-------h-HHHH--hcCC
Confidence 34556653 35788988877642 3466778888999998876543211 010 1 2445 4677
Q ss_pred EEEecCCh--------------hhHHHHHHhCCcEEecC
Q psy16503 85 VFISHGGF--------------LGTTEALYSGVPIIGIP 109 (244)
Q Consensus 85 l~IthgG~--------------~s~~Eal~~gvP~i~vP 109 (244)
+++--||- ..+.|++..|+|+++.-
T Consensus 82 ~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~S 120 (233)
T PRK05282 82 AIFVGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIGWS 120 (233)
T ss_pred EEEECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEEC
Confidence 77777772 22457777898888763
No 240
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=35.63 E-value=1.3e+02 Score=26.38 Aligned_cols=93 Identities=12% Similarity=0.077 Sum_probs=47.7
Q ss_pred HHHHHhcCCCceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCCCCCCCCCEEEeccCChhhhhCCCCeeE
Q psy16503 6 IKKFLDESVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGKIDKILLKSWAPQRDILDHPNVKV 85 (244)
Q Consensus 6 l~~~l~~~~~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~~~~~~~nv~~~~~~pq~~lL~h~~~~l 85 (244)
+.+.+....+++++|+-++.. ....+.+.+.++..+..+.+...- ...|. +.... .-.+.....++|+
T Consensus 14 l~~~~~~~~~r~liv~d~~~~------~~~~~~v~~~l~~~~~~~~~~~~~---~~~p~-~~~v~--~~~~~~~~~~~d~ 81 (345)
T cd08171 14 IPEVCEKYGKKVVVIGGKTAL------AAAKDKIKAALEQSGIEITDFIWY---GGEST-YENVE--RLKKNPAVQEADM 81 (345)
T ss_pred HHHHHHhcCCEEEEEeCHHHH------HHHHHHHHHHHHHCCCeEEEEEec---CCCCC-HHHHH--HHHHHHhhcCCCE
Confidence 444555433456666554442 234666777776665554432211 11111 00000 1112333367899
Q ss_pred EEecCChhhHHHH-----HHhCCcEEecCCC
Q psy16503 86 FISHGGFLGTTEA-----LYSGVPIIGIPMF 111 (244)
Q Consensus 86 ~IthgG~~s~~Ea-----l~~gvP~i~vP~~ 111 (244)
+|.=||. |+..+ ...|+|++.+|-.
T Consensus 82 iiavGGG-s~~D~aK~ia~~~~~p~i~VPTt 111 (345)
T cd08171 82 IFAVGGG-KAIDTVKVLADKLGKPVFTFPTI 111 (345)
T ss_pred EEEeCCc-HHHHHHHHHHHHcCCCEEEecCc
Confidence 9998885 44443 3358999999963
No 241
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=35.38 E-value=75 Score=19.02 Aligned_cols=24 Identities=38% Similarity=0.386 Sum_probs=16.4
Q ss_pred CHHHHHHHHHHHhCC-hhHHHHHHH
Q psy16503 136 TEETVLVALRTVLGN-PSYKKRAEK 159 (244)
Q Consensus 136 ~~~~l~~ai~~ll~~-~~y~~~a~~ 159 (244)
++++|..||+.+.++ -++++.|+.
T Consensus 1 tee~l~~Ai~~v~~g~~S~r~AA~~ 25 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGKMSIRKAAKK 25 (45)
T ss_dssp -HHHHHHHHHHHHTTSS-HHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 468899999999876 455555444
No 242
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=35.29 E-value=3.2e+02 Score=24.15 Aligned_cols=113 Identities=16% Similarity=0.182 Sum_probs=62.4
Q ss_pred ceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCCCCC-CCCCEEEeccCC-hhhhhCCCCeeEEEecCChh
Q psy16503 16 GVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSG-KIDKILLKSWAP-QRDILDHPNVKVFISHGGFL 93 (244)
Q Consensus 16 ~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~~~~-~~~nv~~~~~~p-q~~lL~h~~~~l~IthgG~~ 93 (244)
..|++.-||... +-+|.=.+..+.+++++....++....-...+. .-.++...+.+- -.+.++...+|.+|.+.-
T Consensus 191 D~IviGPgSl~T-SIlP~Lllp~I~eaLr~~~ap~i~v~n~~~~~g~~t~~~~~~d~i~~i~~~~g~~~iD~vivd~~-- 267 (323)
T COG0391 191 DLIVIGPGSLFT-SILPILLLPGIAEALRETVAPIVYVCNLMTQAGKETDGLSVEDHIAALAQHYGAFVIDAVIVDND-- 267 (323)
T ss_pred CEEEEcCCccHh-hhchhhchhHHHHHHHhCCCCEEEeccCCCCCCcccccccHHHHHHHHHHHhCcccCcEEEECCC--
Confidence 489999999875 557888889999999987666665543221222 112222221110 011111112333333332
Q ss_pred hHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHh
Q psy16503 94 GTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVL 148 (244)
Q Consensus 94 s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll 148 (244)
-..+|..+ +++++.+.-+..+...+..+.+...+.+-+
T Consensus 268 ----------------~~~~~~~~-~~~~~~~~~V~~~~~~~~~~~~~~~~~~~~ 305 (323)
T COG0391 268 ----------------DVEDEDLI-RYVEEKGLEVEIDPTLLDREGLRRALARNL 305 (323)
T ss_pred ----------------CccHHHHH-HHhhhcCceeEechhhhhchhhHHHHHHHh
Confidence 24567777 778888888877765555555544444433
No 243
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=35.22 E-value=1.5e+02 Score=21.31 Aligned_cols=40 Identities=13% Similarity=-0.012 Sum_probs=17.8
Q ss_pred CchHHHHHHhcCCCceEEEEcCCCCCCCCCCHHHHHHHHHHHhcC
Q psy16503 2 NETDIKKFLDESVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQI 46 (244)
Q Consensus 2 ~p~~l~~~l~~~~~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~ 46 (244)
+++++.+.+.+.+-.+|.+|.-.. .+......+++.+++.
T Consensus 38 ~~~~l~~~~~~~~pdvV~iS~~~~-----~~~~~~~~~i~~l~~~ 77 (119)
T cd02067 38 PPEEIVEAAKEEDADAIGLSGLLT-----THMTLMKEVIEELKEA 77 (119)
T ss_pred CHHHHHHHHHHcCCCEEEEecccc-----ccHHHHHHHHHHHHHc
Confidence 344555555444333444443212 1234445555555554
No 244
>KOG0503|consensus
Probab=34.84 E-value=74 Score=28.33 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=27.9
Q ss_pred CCchHHHHHHhcCCCceEEEEcCCCCCCCCCCHHHHHHHHHH
Q psy16503 1 MNETDIKKFLDESVNGVIYFSMGSIIQGKSFPSDKRKAFLRA 42 (244)
Q Consensus 1 ~~p~~l~~~l~~~~~~vI~vs~Gs~~~~~~~~~~~~~~i~~a 42 (244)
++|+-++.+++..-+|+|+.++|+...+.. ..+...++.++
T Consensus 264 ~s~sli~a~~~~~~kGlVL~s~Gag~~~~~-~~~~~~~L~~~ 304 (368)
T KOG0503|consen 264 LSPSLIQAALKLPAKGLVLASSGAGSWPTN-RSDVIDELPEA 304 (368)
T ss_pred CCHHHHHHhhcccCceEEEEeccCCCCCCc-chhHHHHhHHH
Confidence 467778888876668999999999965432 23444444443
No 245
>PF11346 DUF3149: Protein of unknown function (DUF3149); InterPro: IPR021494 This bacterial family of proteins has no known function.
Probab=34.79 E-value=1e+02 Score=18.39 Aligned_cols=32 Identities=16% Similarity=0.197 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16503 202 QYILLDVIIALILLIAAMVWSIQWLVRYALIT 233 (244)
Q Consensus 202 ~~~~lDv~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (244)
+.+.=||-+..++++++.+.+..+..+++.++
T Consensus 5 ~LF~s~vGL~Sl~vI~~~igm~~~~~~~F~~k 36 (42)
T PF11346_consen 5 DLFGSDVGLMSLIVIVFTIGMGVFFIRYFIRK 36 (42)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444666655556555555555555555444
No 246
>PF11338 DUF3140: Protein of unknown function (DUF3140); InterPro: IPR021487 Some members in this family of proteins are annotated as DNA binding proteins. No function is currently known.
Probab=34.73 E-value=53 Score=23.26 Aligned_cols=43 Identities=9% Similarity=0.213 Sum_probs=25.6
Q ss_pred CCchHHHHHHhcCCCceEEEEcCCCCCCCCCCHHHHHHHHHHHhcC
Q psy16503 1 MNETDIKKFLDESVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQI 46 (244)
Q Consensus 1 ~~p~~l~~~l~~~~~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~ 46 (244)
|+|.||++||.....+-+-...+. ++....+.-+.|++.+...
T Consensus 8 Mt~~EL~~WL~t~~S~~~g~~~~~---~es~Gh~sGRrIv~IL~K~ 50 (92)
T PF11338_consen 8 MTPAELEDWLRTDESKSVGEKKDG---GESVGHESGRRIVEILRKR 50 (92)
T ss_pred CCHHHHHHHHcCccccccccCCCC---CcccCcchhhHHHHHHhcC
Confidence 789999999998765555555521 1112234455566666543
No 247
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=34.56 E-value=1.5e+02 Score=22.98 Aligned_cols=64 Identities=17% Similarity=0.192 Sum_probs=43.4
Q ss_pred CeeEEEecCChhh----H--------HHHHHhCCcEEecCCCcc--hhhHHHHHHHcCceeecCCCCCCHHHHHHHHH
Q psy16503 82 NVKVFISHGGFLG----T--------TEALYSGVPIIGIPMFGD--QKANIRVVEKAGFGVTLPYDQITEETVLVALR 145 (244)
Q Consensus 82 ~~~l~IthgG~~s----~--------~Eal~~gvP~i~vP~~~d--Q~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~ 145 (244)
+.-++||.|..+. . .+.-..|++++++....+ +..-.+.+.+.+-|.....++.+...+..+++
T Consensus 100 ~~ivliTDG~~~~g~~~~~~~~~~~~~~l~~~gi~v~~I~~~~~~~~~~~l~~iA~~tgG~~~~~~d~~~~~~~~~~~ 177 (178)
T cd01451 100 PLIVVITDGRANVGPDPTADRALAAARKLRARGISALVIDTEGRPVRRGLAKDLARALGGQYVRLPDLSADAIASAVR 177 (178)
T ss_pred eEEEEECCCCCCCCCCchhHHHHHHHHHHHhcCCcEEEEeCCCCccCccHHHHHHHHcCCeEEEcCcCCHHHHHHHhh
Confidence 4556777665431 1 222357899988877543 44566778888889888888888888877764
No 248
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=34.48 E-value=66 Score=32.05 Aligned_cols=20 Identities=25% Similarity=0.278 Sum_probs=8.9
Q ss_pred CCCcchhhHHHHHHHcCcee
Q psy16503 109 PMFGDQKANIRVVEKAGFGV 128 (244)
Q Consensus 109 P~~~dQ~~na~~~~~~G~g~ 128 (244)
|-..++..+...+.+.++.-
T Consensus 316 P~v~~~l~~l~~v~~~nl~~ 335 (806)
T PF05478_consen 316 PNVTSQLNNLEEVIKTNLSS 335 (806)
T ss_pred CChHHHHHHHHHHHhccHHH
Confidence 33344444555444444433
No 249
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=34.42 E-value=69 Score=27.46 Aligned_cols=57 Identities=19% Similarity=0.311 Sum_probs=40.2
Q ss_pred CCeeEEEecCChhhHHHHHHh----CCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCChhHH
Q psy16503 81 PNVKVFISHGGFLGTTEALYS----GVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSYK 154 (244)
Q Consensus 81 ~~~~l~IthgG~~s~~Eal~~----gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~~y~ 154 (244)
..++++++=||-|++..+... ++|++++-.- .+|... ++..+++.+++.++++ .+|+
T Consensus 54 ~~~d~ivvlGGDGtlL~~~~~~~~~~~pilgin~G-------------~lGFLt---~~~~~~~~~~~~~~~~-~~~~ 114 (281)
T COG0061 54 EKADLIVVLGGDGTLLRAARLLARLDIPVLGINLG-------------HLGFLT---DFEPDELEKALDALLE-GEYR 114 (281)
T ss_pred cCceEEEEeCCcHHHHHHHHHhccCCCCEEEEeCC-------------Cccccc---ccCHHHHHHHHHHHhc-CceE
Confidence 578999999999999988764 4588887221 144443 3457888888888886 4443
No 250
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=34.17 E-value=2.9e+02 Score=23.47 Aligned_cols=89 Identities=18% Similarity=0.231 Sum_probs=50.3
Q ss_pred CchHHHHHH---hcCCCceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCCCCCCCCCEEEeccCChhhhh
Q psy16503 2 NETDIKKFL---DESVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGKIDKILLKSWAPQRDIL 78 (244)
Q Consensus 2 ~p~~l~~~l---~~~~~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~~~~~~~nv~~~~~~pq~~lL 78 (244)
+++++.+.. .++ +.++++.+|++. -....+...|.+.+.++....+... .+ .+...+
T Consensus 116 ~~~~l~~av~~L~~A-~rI~~~G~g~S~-------~vA~~~~~~l~~ig~~~~~~~d~~~-----------~~-~~~~~~ 175 (281)
T COG1737 116 DEEALERAVELLAKA-RRIYFFGLGSSG-------LVASDLAYKLMRIGLNVVALSDTHG-----------QL-MQLALL 175 (281)
T ss_pred CHHHHHHHHHHHHcC-CeEEEEEechhH-------HHHHHHHHHHHHcCCceeEecchHH-----------HH-HHHHhC
Confidence 455555543 333 367777777773 3455566667777766555433210 00 133334
Q ss_pred CCCCeeEEEecCChh-----hHHHHHHhCCcEEecCC
Q psy16503 79 DHPNVKVFISHGGFL-----GTTEALYSGVPIIGIPM 110 (244)
Q Consensus 79 ~h~~~~l~IthgG~~-----s~~Eal~~gvP~i~vP~ 110 (244)
...-+-++|++.|.. .+..|-..|+|+|.+--
T Consensus 176 ~~~Dv~i~iS~sG~t~e~i~~a~~ak~~ga~vIaiT~ 212 (281)
T COG1737 176 TPGDVVIAISFSGYTREIVEAAELAKERGAKVIAITD 212 (281)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEcC
Confidence 434466788888842 34445568999988843
No 251
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=34.11 E-value=1.4e+02 Score=26.82 Aligned_cols=57 Identities=18% Similarity=0.225 Sum_probs=36.1
Q ss_pred ccCChhhhhCCCCeeEEEecCC------------hhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeec
Q psy16503 70 SWAPQRDILDHPNVKVFISHGG------------FLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTL 130 (244)
Q Consensus 70 ~~~pq~~lL~h~~~~l~IthgG------------~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l 130 (244)
+++...+.+ ..+|++||--| .+-..-|-.+|||++++-=.- ..+...+.+.|+.-+.
T Consensus 273 ~~~~l~~~l--~~ADlVITGEG~~D~Qtl~GK~p~~Va~~A~~~~vPviai~G~v--~~~~~~~~~~g~~a~~ 341 (375)
T TIGR00045 273 ELLDLEQKI--KDADLVITGEGRLDRQSLMGKAPVGVAKRAKKYGVPVIAIAGSL--GDGVDVLPQHGIDAAF 341 (375)
T ss_pred HhhCHHHHh--cCCCEEEECCCcccccccCCchHHHHHHHHHHhCCeEEEEeccc--CCChHHHHhcCccEEE
Confidence 455666777 78999999877 333445566899999983211 2234446666765443
No 252
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=34.10 E-value=1.7e+02 Score=25.98 Aligned_cols=96 Identities=11% Similarity=0.153 Sum_probs=47.3
Q ss_pred HHHHHHhcCC-CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCCCCCCCCCEEEeccCChhhhhCCCCe
Q psy16503 5 DIKKFLDESV-NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGKIDKILLKSWAPQRDILDHPNV 83 (244)
Q Consensus 5 ~l~~~l~~~~-~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~~~~~~~nv~~~~~~pq~~lL~h~~~ 83 (244)
++.+.+.... +++++|+-++... ....+.+.+.|++.+..+.+. ++ ....|+--.+. .-.+.+...++
T Consensus 13 ~l~~~l~~~~~~~~lvv~~~~~~~-----~~~~~~v~~~L~~~~~~~~~~-~~--~~~~p~~~~v~---~~~~~~~~~~~ 81 (370)
T cd08551 13 KLGEEIKNLGGRKALIVTDPGLVK-----TGVLDKVIDSLKEAGIEVVIF-DG--VEPNPTLSNVD---AAVAAYREEGC 81 (370)
T ss_pred HHHHHHHHcCCCeEEEEeCcchhh-----CccHHHHHHHHHHcCCeEEEE-CC--CCCCCCHHHHH---HHHHHHHhcCC
Confidence 4555565433 3455554433311 245666777777666555432 21 11111100000 11122333578
Q ss_pred eEEEecCChhhHHHH----HHh------------------CCcEEecCCC
Q psy16503 84 KVFISHGGFLGTTEA----LYS------------------GVPIIGIPMF 111 (244)
Q Consensus 84 ~l~IthgG~~s~~Ea----l~~------------------gvP~i~vP~~ 111 (244)
|.+|.=||...+--| +.. ++|++.+|..
T Consensus 82 d~IiaiGGGs~~D~AK~va~~~~~~~~~~~~~~~~~~~~~~~p~i~VPTt 131 (370)
T cd08551 82 DGVIAVGGGSVLDTAKAIALLATNPGDIWDYEGGKPVIKPALPLIAIPTT 131 (370)
T ss_pred CEEEEeCCchHHHHHHHHHHHHhCCCcHHHHhCcccccCCCCCEEEecCC
Confidence 999998885332211 122 7999999974
No 253
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=33.99 E-value=80 Score=27.49 Aligned_cols=8 Identities=13% Similarity=0.152 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q psy16503 139 TVLVALRT 146 (244)
Q Consensus 139 ~l~~ai~~ 146 (244)
.|..++..
T Consensus 176 ~l~~~i~~ 183 (299)
T PF02009_consen 176 TLVGIIYA 183 (299)
T ss_pred HHHHHHHH
Confidence 33333333
No 254
>PF03685 UPF0147: Uncharacterised protein family (UPF0147); InterPro: IPR005354 The proteins in this entry are functionally uncharacterised.; PDB: 2QZG_C 2QSB_A.
Probab=33.19 E-value=1.2e+02 Score=21.06 Aligned_cols=58 Identities=12% Similarity=0.198 Sum_probs=33.9
Q ss_pred HHHHHHHHHHhCChh----HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCCCCCCccc
Q psy16503 138 ETVLVALRTVLGNPS----YKKRAEKVARLFQDRPMPPLDTAIYWIEHVIRHGGGAHLRPAS 195 (244)
Q Consensus 138 ~~l~~ai~~ll~~~~----y~~~a~~~s~~~~~~~~~~~~~a~~~ie~~~~~~~~~~l~~~~ 195 (244)
++....++++.+|.+ .|+.|.+....+.+...++.-+|+.-|-.+-+-...|.+..++
T Consensus 9 ~~~~~~L~~I~~D~sVPRNIRr~a~ea~~~L~~e~~~~~vRaataIs~LdeIsnDPNmP~h~ 70 (85)
T PF03685_consen 9 KQAIQMLERIINDTSVPRNIRRAAEEAKEILNNEEESPGVRAATAISILDEISNDPNMPSHT 70 (85)
T ss_dssp HHHHHHHHHHHT-TTS-HHHHHHHHHHHHHCT-TTS-HHHHHHHHHHHHHHHCT-TTS-HHH
T ss_pred HHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhCCCcchhHhHHHHHHHHHHhhcCCCCchHH
Confidence 345556677777754 6666777777777766667777776666655555566665443
No 255
>PRK13840 sucrose phosphorylase; Provisional
Probab=33.06 E-value=4.2e+02 Score=24.91 Aligned_cols=130 Identities=7% Similarity=0.063 Sum_probs=75.9
Q ss_pred hHHHHHHhcCCCceEEEEcCCC-------------CCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCC--C-CCCCCCEE
Q psy16503 4 TDIKKFLDESVNGVIYFSMGSI-------------IQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGEN--M-SGKIDKIL 67 (244)
Q Consensus 4 ~~l~~~l~~~~~~vI~vs~Gs~-------------~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~--~-~~~~~nv~ 67 (244)
..|.+|+...+++. +--+.|+ .....++++.++.+.+.+...+..+-++..+.. . ..-.-|.-
T Consensus 270 ~~L~~~l~~~p~~~-~n~L~~HDgIgl~d~~~~~~~~~gll~~~e~~~l~~~~~~~~~~~~~~~~~~~as~~~~Y~in~~ 348 (495)
T PRK13840 270 EALAHWLEIRPRNA-VTVLDTHDGIGIIDVGADDRGLAGLLPDEQIDNLVETIHANSHGESRQATGAAASNLDLYQVNCT 348 (495)
T ss_pred hHHHHHHHhCCCcc-EEeeecCCCCCcccccccccccccCCCHHHHHHHHHHHHHhccCceeecCCcccccccchhhhcc
Confidence 45677887766444 2222321 111347889999999999888777788766532 1 11111322
Q ss_pred EeccCChhhhhCCCCeeEEEecCChhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHH
Q psy16503 68 LKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALR 145 (244)
Q Consensus 68 ~~~~~pq~~lL~h~~~~l~IthgG~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~ 145 (244)
+.+- |+...-+.++.|+ .-...-|+|+|-+.-.--+...-..+++.|-|+.+....++.+++.+.++
T Consensus 349 ~~~A------l~~~d~r~lla~a-----i~~~~~GiP~iY~~~ll~~~ND~~~~~~t~~~R~inR~~~~~~~~~~~l~ 415 (495)
T PRK13840 349 YYDA------LGRNDQDYLAARA-----IQFFAPGIPQVYYVGLLAGPNDMELLARTNVGRDINRHYYSTAEIDEALE 415 (495)
T ss_pred HHHH------hcCCcHHHHHHHH-----HHHcCCCcceeeechhhccCccHHHHHhcCCCcccCCCCCCHHHHHHHHH
Confidence 2221 1111111222222 11234789999876544444455677778999999999999998888853
No 256
>PHA02849 putative transmembrane protein; Provisional
Probab=33.00 E-value=1e+02 Score=21.08 Aligned_cols=22 Identities=23% Similarity=0.732 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy16503 208 VIIALILLIAAMVWSIQWLVRY 229 (244)
Q Consensus 208 v~~~~~~~~~~~~~~~~~~~~~ 229 (244)
|+.++++++.++++.+.+++++
T Consensus 19 vi~v~v~vI~i~~flLlyLvkw 40 (82)
T PHA02849 19 VILVFVLVISFLAFMLLYLIKW 40 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555554
No 257
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=32.99 E-value=1.3e+02 Score=20.07 Aligned_cols=17 Identities=6% Similarity=-0.013 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy16503 217 AAMVWSIQWLVRYALIT 233 (244)
Q Consensus 217 ~~~~~~~~~~~~~~~~~ 233 (244)
+++++++.+++.++..+
T Consensus 19 L~lL~~~i~l~~~~~~~ 35 (79)
T PF04277_consen 19 LILLILVISLMSKLIRK 35 (79)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33344444555555444
No 258
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=32.70 E-value=2.1e+02 Score=22.78 Aligned_cols=28 Identities=7% Similarity=0.145 Sum_probs=18.9
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEE
Q psy16503 17 VIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWK 53 (244)
Q Consensus 17 vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~ 53 (244)
++++-+|+.. ...+..+++..+..+.+.
T Consensus 2 i~vid~g~gn---------~~~~~~~l~~~g~~v~~~ 29 (199)
T PRK13181 2 IAIIDYGAGN---------LRSVANALKRLGVEAVVS 29 (199)
T ss_pred EEEEeCCCCh---------HHHHHHHHHHCCCcEEEE
Confidence 5778888872 355667777777665554
No 259
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=32.26 E-value=2.1e+02 Score=24.75 Aligned_cols=93 Identities=14% Similarity=0.095 Sum_probs=46.7
Q ss_pred HHHHHHhcCC-CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCCCCCCCCCEEEeccCChhhhhCCCCe
Q psy16503 5 DIKKFLDESV-NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGKIDKILLKSWAPQRDILDHPNV 83 (244)
Q Consensus 5 ~l~~~l~~~~-~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~~~~~~~nv~~~~~~pq~~lL~h~~~ 83 (244)
++.+++.... +++++|+ |.... +...+.+.+.|++. ..+.+..... ++ | .+.... .-.+.+...++
T Consensus 13 ~l~~~~~~~g~~~~liv~-~~~~~-----~~~~~~v~~~l~~~-~~~~~~~~~~--~~-p-~~~~v~--~~~~~~~~~~~ 79 (332)
T cd07766 13 KIGEEIKRGGFDRALVVS-DEGVV-----KGVGEKVADSLKKL-IAVHIFDGVG--PN-P-TFEEVK--EAVERARAAEV 79 (332)
T ss_pred HHHHHHHhcCCCeEEEEe-CCchh-----hhHHHHHHHHHHhc-CcEEEeCCcC--CC-c-CHHHHH--HHHHHHHhcCc
Confidence 4555555433 4566666 44421 25566677777664 4443322211 11 1 110000 11122333578
Q ss_pred eEEEecCChhhHHHH-----HHh--CCcEEecCCC
Q psy16503 84 KVFISHGGFLGTTEA-----LYS--GVPIIGIPMF 111 (244)
Q Consensus 84 ~l~IthgG~~s~~Ea-----l~~--gvP~i~vP~~ 111 (244)
|.+|.=||. |+..+ ... |+|++.+|..
T Consensus 80 d~IIaiGGG-s~~D~aK~ia~~~~~~~p~i~iPTt 113 (332)
T cd07766 80 DAVIAVGGG-STLDTAKAVAALLNRGLPIIIVPTT 113 (332)
T ss_pred CEEEEeCCc-hHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 999998884 33332 223 9999999964
No 260
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=31.74 E-value=1.9e+02 Score=20.52 Aligned_cols=30 Identities=3% Similarity=0.195 Sum_probs=20.5
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEE
Q psy16503 17 VIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIW 52 (244)
Q Consensus 17 vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw 52 (244)
.|++|.+.. ..+.+..+++.+.+.++.++-
T Consensus 2 ~vl~s~~~~------~k~~~~~~~~~l~~~G~~l~a 31 (110)
T cd01424 2 TVFISVADR------DKPEAVEIAKRLAELGFKLVA 31 (110)
T ss_pred eEEEEEEcC------cHhHHHHHHHHHHHCCCEEEE
Confidence 467777755 235566788888888887653
No 261
>PRK04330 hypothetical protein; Provisional
Probab=31.62 E-value=1.8e+02 Score=20.35 Aligned_cols=57 Identities=11% Similarity=0.144 Sum_probs=35.6
Q ss_pred HHHHHHHHHhCChh----HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCCCCCCccc
Q psy16503 139 TVLVALRTVLGNPS----YKKRAEKVARLFQDRPMPPLDTAIYWIEHVIRHGGGAHLRPAS 195 (244)
Q Consensus 139 ~l~~ai~~ll~~~~----y~~~a~~~s~~~~~~~~~~~~~a~~~ie~~~~~~~~~~l~~~~ 195 (244)
+....++++.+|.+ .|+.|.+....+.+...++.-+|+.-|-.+-+--..|.+..++
T Consensus 13 ~~~~~L~~I~~D~sVPRNIRraa~ea~~~L~~e~~~~~vRaA~AIs~LdeIs~DPNmP~h~ 73 (88)
T PRK04330 13 QAIQMLEEIINDTSVPRNIRRAATEAKEILLNEEESPGVRAATAISILDEISNDPNMPLHT 73 (88)
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHhCcCcchhHHHHHHHHHHHHhhcCCCCChHH
Confidence 34455566677744 6777777777787766667667666665555544555555444
No 262
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=31.59 E-value=2.1e+02 Score=20.95 Aligned_cols=48 Identities=15% Similarity=0.238 Sum_probs=31.3
Q ss_pred chHHHHHHhcCCCceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCC-eEEEEec
Q psy16503 3 ETDIKKFLDESVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQ-RVIWKWE 55 (244)
Q Consensus 3 p~~l~~~l~~~~~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~-~viw~~~ 55 (244)
.++...|+.. |-++++.|-.... .+.+.+..+++.+.+.+. .+.++.+
T Consensus 33 ~~d~~~~l~~---gElvlttg~~~~~--~~~~~~~~~i~~L~~~~~agL~i~~~ 81 (123)
T PF07905_consen 33 APDPSDWLRG---GELVLTTGYALRD--DDEEELREFIRELAEKGAAGLGIKTG 81 (123)
T ss_pred cCCHHHhCCC---CeEEEECCcccCC--CCHHHHHHHHHHHHHCCCeEEEEecc
Confidence 4467788754 4588888887542 234567778888887775 5555554
No 263
>PRK14571 D-alanyl-alanine synthetase A; Provisional
Probab=31.47 E-value=3.3e+02 Score=23.17 Aligned_cols=37 Identities=14% Similarity=0.160 Sum_probs=27.8
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEe
Q psy16503 18 IYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKW 54 (244)
Q Consensus 18 I~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~ 54 (244)
|.|-+|+...-...+-.....+.++|++.++++....
T Consensus 3 v~v~~gg~s~e~~~sl~s~~~i~~al~~~g~~~~~i~ 39 (299)
T PRK14571 3 VALLMGGVSREREISLRSGERVKKALEKLGYEVTVFD 39 (299)
T ss_pred EEEEeCCCCCCccchHHHHHHHHHHHHHcCCeEEEEc
Confidence 5566676655566777888999999999998776543
No 264
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=31.45 E-value=54 Score=28.54 Aligned_cols=35 Identities=29% Similarity=0.407 Sum_probs=28.1
Q ss_pred hhCCCCeeEEEecCChhhHHHHHH----hCCcEEecCCC
Q psy16503 77 ILDHPNVKVFISHGGFLGTTEALY----SGVPIIGIPMF 111 (244)
Q Consensus 77 lL~h~~~~l~IthgG~~s~~Eal~----~gvP~i~vP~~ 111 (244)
.|..-+.+.+|.=||-+|+.-|.. .++|++++|-.
T Consensus 86 ~l~~~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkT 124 (301)
T TIGR02482 86 NLKKLGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGT 124 (301)
T ss_pred HHHHcCCCEEEEeCCchHHHHHHHHHHhhCCCEEeeccc
Confidence 344468999999999998876643 79999999964
No 265
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=31.41 E-value=2.1e+02 Score=23.14 Aligned_cols=52 Identities=13% Similarity=-0.055 Sum_probs=34.5
Q ss_pred hCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCChhH
Q psy16503 101 SGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSY 153 (244)
Q Consensus 101 ~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~~y 153 (244)
.+.|+|++-...+.......+.+.|+.=.+.+ +.+.++|.++|+.+++...|
T Consensus 67 p~~~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K-~~~~~eL~~aI~~v~~G~~~ 118 (207)
T PRK11475 67 PRMRRLVIADDDIEARLIGSLSPSPLDGVLSK-ASTLEILQQELFLSLNGVRQ 118 (207)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHcCCeEEEec-CCCHHHHHHHHHHHHCCCcc
Confidence 46788888655444444455556787334443 44789999999999987554
No 266
>PF02481 DNA_processg_A: DNA recombination-mediator protein A; InterPro: IPR003488 The SMF family, of DNA processing chain A, dprA, are a group of bacterial proteins. In Helicobacter pylori, dprA is required for natural chromosomal and plasmid transformation []. It has now been shown that DprA is found to bind cooperatively to single-stranded DNA (ssDNA) and to interact with RecA. In the process, DprA-RecA-ssDNA filaments are produced and these filaments catalyse the homology-dependent formation of joint molecules. While the Escherichia coli SSB protein limits access of RecA to ssDNA, DprA alleviates this barrier. It is proposed that DprA is a new member of the recombination-mediator protein family, dedicated to natural bacterial transformation [].; GO: 0009294 DNA mediated transformation; PDB: 3MAJ_A.
Probab=31.33 E-value=73 Score=26.07 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=25.3
Q ss_pred CChhhHHHHHHhCCcEEecCC--CcchhhHHHHHHHcCceeec
Q psy16503 90 GGFLGTTEALYSGVPIIGIPM--FGDQKANIRVVEKAGFGVTL 130 (244)
Q Consensus 90 gG~~s~~Eal~~gvP~i~vP~--~~dQ~~na~~~~~~G~g~~l 130 (244)
|.+.++.+|+..|+|+.++|- ..++..-...+.+.| |..+
T Consensus 169 Gt~~ta~~A~~~gr~v~~vp~~~~~~~~~G~~~Li~~G-A~~v 210 (212)
T PF02481_consen 169 GTLHTARFALEQGRPVFAVPGPIDDPNSEGNNELIKEG-AKLV 210 (212)
T ss_dssp THHHHHHHHHHHT--EEE----TT-GGGHHHHHHHHTT--EE-
T ss_pred hHHHHHHHHHHcCCeEEEEeCCCCCcccHHHHHHHHcC-CEee
Confidence 446888899999999999975 445667778888888 5444
No 267
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=31.17 E-value=1.2e+02 Score=24.88 Aligned_cols=77 Identities=26% Similarity=0.366 Sum_probs=48.2
Q ss_pred ceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCCCCCCCCCEEEec---cCChhhhhCCCCeeEEEecCCh
Q psy16503 16 GVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGKIDKILLKS---WAPQRDILDHPNVKVFISHGGF 92 (244)
Q Consensus 16 ~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~~~~~~~nv~~~~---~~pq~~lL~h~~~~l~IthgG~ 92 (244)
.+++|--|+. .+..+.+|+++.+..+.+..+.++.. ..+.+.+-. |-+-++-|. -.|..
T Consensus 3 ~i~IIDyg~G---------NL~Sv~~Aler~G~~~~vs~d~~~i~-~AD~liLPGVGaf~~am~~L~--------~~gl~ 64 (204)
T COG0118 3 MVAIIDYGSG---------NLRSVKKALERLGAEVVVSRDPEEIL-KADKLILPGVGAFGAAMANLR--------ERGLI 64 (204)
T ss_pred EEEEEEcCcc---------hHHHHHHHHHHcCCeeEEecCHHHHh-hCCEEEecCCCCHHHHHHHHH--------hcchH
Confidence 3566666666 26788999999998888865543322 223333322 112333332 12667
Q ss_pred hhHHHHHHhCCcEEecCC
Q psy16503 93 LGTTEALYSGVPIIGIPM 110 (244)
Q Consensus 93 ~s~~Eal~~gvP~i~vP~ 110 (244)
..+.|++..|+|++++-+
T Consensus 65 ~~i~~~~~~~kP~LGICl 82 (204)
T COG0118 65 EAIKEAVESGKPFLGICL 82 (204)
T ss_pred HHHHHHHhcCCCEEEEeH
Confidence 788999999999999854
No 268
>PRK10342 glycerate kinase I; Provisional
Probab=30.98 E-value=2.1e+02 Score=25.88 Aligned_cols=88 Identities=16% Similarity=0.153 Sum_probs=48.7
Q ss_pred ccCChhhhhCCCCeeEEEecCC------------hhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCH
Q psy16503 70 SWAPQRDILDHPNVKVFISHGG------------FLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITE 137 (244)
Q Consensus 70 ~~~pq~~lL~h~~~~l~IthgG------------~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~ 137 (244)
+++...+.+ ..+|++||-=| .+-..-|-.++||++.+-=.- ..+...+.+.|+.-+....+ .+
T Consensus 274 ~~~~l~~~l--~~ADLVITGEG~~D~QTl~GK~p~gVa~~A~~~~vPviai~G~~--~~~~~~~~~~g~~av~~i~~-~~ 348 (381)
T PRK10342 274 TALNLEEHI--HDCTLVITGEGRIDSQSIHGKVPIGVANVAKKYHKPVIGIAGSL--TDDVGVVHQHGIDAVFSVLT-SI 348 (381)
T ss_pred HhcCHHHHh--ccCCEEEECCCcCcccccCCccHHHHHHHHHHhCCCEEEEeccc--CCChHHHHhcCceEEEEcCC-CC
Confidence 455566777 78999999766 333445667899999983221 22235567777755443222 12
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy16503 138 ETVLVALRTVLGNPSYKKRAEKVARLF 164 (244)
Q Consensus 138 ~~l~~ai~~ll~~~~y~~~a~~~s~~~ 164 (244)
.++.+++++-- +..++.++++.+.+
T Consensus 349 ~~l~~a~~~~~--~~l~~~~~~i~r~~ 373 (381)
T PRK10342 349 GTLDEAFRGAY--DNICRASRNIAATL 373 (381)
T ss_pred CCHHHHHHHHH--HHHHHHHHHHHHHH
Confidence 33555554432 22344444444444
No 269
>PF07069 PRRSV_2b: Porcine reproductive and respiratory syndrome virus 2b ; InterPro: IPR009775 This family consists of several Porcine reproductive and respiratory syndrome virus (PRRSV) ORF2b proteins. The function of this family is unknown however it is known that large amounts of 2b protein are present in the virion and it is thought that this protein may be an integral component of the virion [].
Probab=30.82 E-value=1.5e+02 Score=19.22 Aligned_cols=29 Identities=21% Similarity=0.432 Sum_probs=15.6
Q ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHh
Q psy16503 205 LLDVIIALIL--LIAAMVWSIQWLVRYALIT 233 (244)
Q Consensus 205 ~lDv~~~~~~--~~~~~~~~~~~~~~~~~~~ 233 (244)
-.|++.++.+ .+.+.-|....++|.+|+.
T Consensus 26 ivdiiiflailfgftiagwlvvfcirlv~sa 56 (73)
T PF07069_consen 26 IVDIIIFLAILFGFTIAGWLVVFCIRLVCSA 56 (73)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3577655433 3444446666666665543
No 270
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=30.71 E-value=53 Score=28.36 Aligned_cols=33 Identities=24% Similarity=0.312 Sum_probs=28.2
Q ss_pred hhhCCCCeeEEEecCChhhHHHHHHhCCcEEec
Q psy16503 76 DILDHPNVKVFISHGGFLGTTEALYSGVPIIGI 108 (244)
Q Consensus 76 ~lL~h~~~~l~IthgG~~s~~Eal~~gvP~i~v 108 (244)
.++..-+-|++|+.++..+..-|-..|+|++.+
T Consensus 87 ~~l~~~~pDlVi~d~~~~~~~aA~~~~iP~i~i 119 (321)
T TIGR00661 87 NIIREYNPDLIISDFEYSTVVAAKLLKIPVICI 119 (321)
T ss_pred HHHHhcCCCEEEECCchHHHHHHHhcCCCEEEE
Confidence 444456779999999999999999999999966
No 271
>COG1983 PspC Putative stress-responsive transcriptional regulator [Transcription / Signal transduction mechanisms]
Probab=30.62 E-value=84 Score=21.04 Aligned_cols=13 Identities=15% Similarity=0.151 Sum_probs=9.9
Q ss_pred cHHHHHHHHHHHH
Q psy16503 199 YWWQYILLDVIIA 211 (244)
Q Consensus 199 ~~~~~~~lDv~~~ 211 (244)
..-+||++|.-++
T Consensus 20 Gla~yf~id~tlV 32 (70)
T COG1983 20 GLAEYFGIDPTLV 32 (70)
T ss_pred hHHHHhCCChHHH
Confidence 4568999998765
No 272
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=30.26 E-value=85 Score=21.97 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16503 205 LLDVIIALILLIAAMVWSIQWLV 227 (244)
Q Consensus 205 ~lDv~~~~~~~~~~~~~~~~~~~ 227 (244)
+||+. ++.++.++++.++.|++
T Consensus 32 ~Lgm~-~lvI~~iFil~Vilwfv 53 (94)
T PF05393_consen 32 NLGMW-FLVICGIFILLVILWFV 53 (94)
T ss_pred ccchh-HHHHHHHHHHHHHHHHH
Confidence 56765 33333333344444443
No 273
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=30.23 E-value=69 Score=25.04 Aligned_cols=29 Identities=28% Similarity=0.520 Sum_probs=21.8
Q ss_pred CeeEEEecCC------hhhHHHHHHhCCcEEecCC
Q psy16503 82 NVKVFISHGG------FLGTTEALYSGVPIIGIPM 110 (244)
Q Consensus 82 ~~~l~IthgG------~~s~~Eal~~gvP~i~vP~ 110 (244)
+..++++|+| .+.+.||...++|+|++.-
T Consensus 60 ~~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 94 (162)
T cd07037 60 RPVAVVCTSGTAVANLLPAVVEAYYSGVPLLVLTA 94 (162)
T ss_pred CCEEEEECCchHHHHHhHHHHHHHhcCCCEEEEEC
Confidence 4456666766 4567899999999999943
No 274
>TIGR02113 coaC_strep phosphopantothenoylcysteine decarboxylase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the N-terminal region of TIGR00521, corresponding to phosphopantothenoylcysteine decarboxylase activity.
Probab=30.20 E-value=1.9e+02 Score=22.98 Aligned_cols=29 Identities=21% Similarity=0.456 Sum_probs=20.8
Q ss_pred hCCcEEecCCCcc-------hhhHHHHHHHcCceee
Q psy16503 101 SGVPIIGIPMFGD-------QKANIRVVEKAGFGVT 129 (244)
Q Consensus 101 ~gvP~i~vP~~~d-------Q~~na~~~~~~G~g~~ 129 (244)
.++|++++|-+.. -..|...+.+.|.-++
T Consensus 111 ~~~pv~i~PaMn~~M~~~p~~~~nl~~L~~~G~~vi 146 (177)
T TIGR02113 111 PETPKLIAPAMNTKMYQNPITQRNIKILKKIGYQEI 146 (177)
T ss_pred CCCCEEEEeCCCHHHhCCHHHHHHHHHHHHCCCEEE
Confidence 3899999996532 2457888888877554
No 275
>COG5547 Small integral membrane protein [Function unknown]
Probab=30.12 E-value=1.5e+02 Score=18.97 Aligned_cols=18 Identities=17% Similarity=0.194 Sum_probs=10.6
Q ss_pred ccHHHHHHHHHHHHHHHH
Q psy16503 198 LYWWQYILLDVIIALILL 215 (244)
Q Consensus 198 ~~~~~~~~lDv~~~~~~~ 215 (244)
|.|++.+-..++..+..+
T Consensus 1 meflk~fkypIIgglvgl 18 (62)
T COG5547 1 MEFLKKFKYPIIGGLVGL 18 (62)
T ss_pred CcHHHHhccchHHHHHHH
Confidence 456666666666554433
No 276
>PRK08322 acetolactate synthase; Reviewed
Probab=29.87 E-value=1.9e+02 Score=27.13 Aligned_cols=29 Identities=28% Similarity=0.440 Sum_probs=22.3
Q ss_pred CCeeEEEecCC------hhhHHHHHHhCCcEEecC
Q psy16503 81 PNVKVFISHGG------FLGTTEALYSGVPIIGIP 109 (244)
Q Consensus 81 ~~~~l~IthgG------~~s~~Eal~~gvP~i~vP 109 (244)
.+..++++|.| .+.+.||...++|+|++.
T Consensus 62 g~~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 62 GKAGVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred CCCEEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 34556777765 457899999999999983
No 277
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=29.87 E-value=77 Score=23.68 Aligned_cols=14 Identities=14% Similarity=0.066 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHhh
Q psy16503 221 WSIQWLVRYALITY 234 (244)
Q Consensus 221 ~~~~~~~~~~~~~~ 234 (244)
+++++++++..++.
T Consensus 82 lli~y~irR~~Kk~ 95 (122)
T PF01102_consen 82 LLISYCIRRLRKKS 95 (122)
T ss_dssp HHHHHHHHHHS---
T ss_pred HHHHHHHHHHhccC
Confidence 34445555555554
No 278
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=29.71 E-value=52 Score=31.13 Aligned_cols=34 Identities=24% Similarity=0.229 Sum_probs=28.2
Q ss_pred hCCCCeeEEEecCChhhHHHHHHhCCcEEecCCCc
Q psy16503 78 LDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFG 112 (244)
Q Consensus 78 L~h~~~~l~IthgG~~s~~Eal~~gvP~i~vP~~~ 112 (244)
+.+..+|++|+.||...+... +..+|+|-++..+
T Consensus 60 ~~~~~~dviIsrG~ta~~i~~-~~~iPVv~i~~s~ 93 (538)
T PRK15424 60 LATERCDAIIAAGSNGAYLKS-RLSVPVILIKPSG 93 (538)
T ss_pred HhhCCCcEEEECchHHHHHHh-hCCCCEEEecCCH
Confidence 444689999999999888887 5679999998753
No 279
>COG1698 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.54 E-value=2e+02 Score=20.22 Aligned_cols=58 Identities=12% Similarity=0.174 Sum_probs=33.6
Q ss_pred HHHHHHHHHHhCChh----HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHcCCCCCCCccc
Q psy16503 138 ETVLVALRTVLGNPS----YKKRAEKVARLFQDRPMPPLDTAIYWIEHVIRHGGGAHLRPAS 195 (244)
Q Consensus 138 ~~l~~ai~~ll~~~~----y~~~a~~~s~~~~~~~~~~~~~a~~~ie~~~~~~~~~~l~~~~ 195 (244)
++....++++++|.. .|+.|.+....+.+...++.-+|+.-|--+-+-..+|.+..++
T Consensus 16 ~q~~~lL~~Ii~DttVPRNIRraA~~a~e~L~~e~e~p~vRaAtaIsiLeeisnDPNmP~h~ 77 (93)
T COG1698 16 NQVMQLLDEIIQDTTVPRNIRRAAEEAKEALNNEGESPAVRAATAISILEEISNDPNMPLHA 77 (93)
T ss_pred HHHHHHHHHHHccccccHHHHHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHhcCCCCchHH
Confidence 344555667777744 5666666666777766666666665554444444455554433
No 280
>cd08188 Fe-ADH4 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and is belonged to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=29.45 E-value=1.6e+02 Score=26.33 Aligned_cols=95 Identities=13% Similarity=0.085 Sum_probs=45.8
Q ss_pred HHHHHHhcCC-CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCCCCCCCCCEEEeccCChhhhhCCCCe
Q psy16503 5 DIKKFLDESV-NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGKIDKILLKSWAPQRDILDHPNV 83 (244)
Q Consensus 5 ~l~~~l~~~~-~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~~~~~~~nv~~~~~~pq~~lL~h~~~ 83 (244)
++.+.+.... +++++|+-++. . .....+.+.+.|+..+..+.+. ++ ....|+.-.+.. -.+.+...++
T Consensus 18 ~l~~~l~~~g~~~~livt~~~~-~----~~~~~~~v~~~L~~~~~~~~~~-~~--v~~~p~~~~v~~---~~~~~~~~~~ 86 (377)
T cd08188 18 LAGRYARRLGAKKVLLVSDPGV-I----KAGWVDRVIESLEEAGLEYVVF-SD--VSPNPRDEEVMA---GAELYLENGC 86 (377)
T ss_pred HHHHHHHHcCCCeEEEEeCcch-h----hCccHHHHHHHHHHcCCeEEEe-CC--CCCCCCHHHHHH---HHHHHHhcCC
Confidence 3445555433 34555544333 1 1123455666666655554432 21 111121100111 1233333678
Q ss_pred eEEEecCChhhHHHHH---Hh--------------------CCcEEecCCC
Q psy16503 84 KVFISHGGFLGTTEAL---YS--------------------GVPIIGIPMF 111 (244)
Q Consensus 84 ~l~IthgG~~s~~Eal---~~--------------------gvP~i~vP~~ 111 (244)
|++|.=||. |+..+. .. ++|+|.+|-.
T Consensus 87 d~IIaiGGG-sviD~AK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT 136 (377)
T cd08188 87 DVIIAVGGG-SPIDCAKGIGIVASNGGHILDFEGVDKITRPLPPLICIPTT 136 (377)
T ss_pred CEEEEeCCc-hHHHHHHHHHHHHHCCCCHHHHhCcccccCCCCCEEEECCC
Confidence 999998885 444333 11 4699999974
No 281
>smart00046 DAGKc Diacylglycerol kinase catalytic domain (presumed). Diacylglycerol (DAG) is a second messenger that acts as a protein kinase C activator. DAG can be produced from the hydrolysis of phosphatidylinositol 4,5-bisphosphate (PIP2) by a phosphoinositide-specific phospholipase C and by the degradation of phosphatidylcholine (PC) by a phospholipase C or the concerted actions of phospholipase D and phosphatidate phosphohydrolase. This domain is presumed to be the catalytic domain. Bacterial homologues areknown.
Probab=29.43 E-value=55 Score=24.10 Aligned_cols=30 Identities=17% Similarity=0.153 Sum_probs=23.5
Q ss_pred CeeEEEecCChhhHHHHHHh----C-----CcEEecCCC
Q psy16503 82 NVKVFISHGGFLGTTEALYS----G-----VPIIGIPMF 111 (244)
Q Consensus 82 ~~~l~IthgG~~s~~Eal~~----g-----vP~i~vP~~ 111 (244)
..+.+|.-||=||+.|.+.. + .|+.++|.-
T Consensus 49 ~~d~vvv~GGDGTi~~vvn~l~~~~~~~~~~plgiiP~G 87 (124)
T smart00046 49 KFDRVLVCGGDGTVGWVLNALDKRELPLPEPPVAVLPLG 87 (124)
T ss_pred cCCEEEEEccccHHHHHHHHHHhcccccCCCcEEEeCCC
Confidence 35688999999999998652 3 678888884
No 282
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=29.42 E-value=1.1e+02 Score=21.95 Aligned_cols=22 Identities=27% Similarity=0.514 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q psy16503 210 IALILLIAAMVWSIQWLVRYAL 231 (244)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~ 231 (244)
+++++++++++++++++++.++
T Consensus 20 ~~~l~~~~~~l~ll~~ll~~~~ 41 (108)
T PF07219_consen 20 LILLLLLFVVLYLLLRLLRRLL 41 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555566666666553
No 283
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.36 E-value=2.5e+02 Score=22.28 Aligned_cols=60 Identities=25% Similarity=0.293 Sum_probs=41.0
Q ss_pred hhHHHHHHhCCcEEecCCC-cchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCChh
Q psy16503 93 LGTTEALYSGVPIIGIPMF-GDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPS 152 (244)
Q Consensus 93 ~s~~Eal~~gvP~i~vP~~-~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~~ 152 (244)
.|..|-..+|.--+.=--+ -=+..|+.+.++.|+-.++-.+..+.++|.++..+=+.|..
T Consensus 88 ~S~~EQasAGLd~Ls~~E~a~f~~LN~aY~~rFgfPfI~aVkg~~k~~Il~a~~~Rl~n~~ 148 (176)
T COG3195 88 ESTSEQASAGLDRLSPEEFARFTELNAAYVERFGFPFIIAVKGNTKDTILAAFERRLDNDR 148 (176)
T ss_pred hhHHHHHhcCcccCCHHHHHHHHHHHHHHHHhcCCceEEeecCCCHHHHHHHHHHHhcccH
Confidence 3555555555433221000 12456999999999998888777789999999988887754
No 284
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=29.23 E-value=66 Score=25.46 Aligned_cols=47 Identities=30% Similarity=0.404 Sum_probs=31.4
Q ss_pred HhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHH
Q psy16503 100 YSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRT 146 (244)
Q Consensus 100 ~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ 146 (244)
..|+|-=-+=+|.|+..|...+.+.|+--++-++-++.+.+.+.+++
T Consensus 119 ~tgI~y~eMlFFDDe~~N~~~v~~lGV~~v~v~~Glt~~~~~~gL~~ 165 (169)
T PF12689_consen 119 KTGIPYEEMLFFDDESRNIEVVSKLGVTCVLVPDGLTWDEFERGLEK 165 (169)
T ss_dssp HH---GGGEEEEES-HHHHHHHHTTT-EEEE-SSS--HHHHHHHHHH
T ss_pred hcCCChhHEEEecCchhcceeeEecCcEEEEeCCCCCHHHHHHHHHH
Confidence 46777655556899999999998889887877788899988888765
No 285
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=29.08 E-value=3.5e+02 Score=24.79 Aligned_cols=30 Identities=20% Similarity=0.231 Sum_probs=22.7
Q ss_pred CCeeEEEecCChh-----------hHHHHHHhCCcEEecCC
Q psy16503 81 PNVKVFISHGGFL-----------GTTEALYSGVPIIGIPM 110 (244)
Q Consensus 81 ~~~~l~IthgG~~-----------s~~Eal~~gvP~i~vP~ 110 (244)
.++|++|.-||.. -+.-|...|+|++.+|.
T Consensus 116 ~~aDlvI~gGG~lfqD~y~~~~~~y~l~A~l~gkpv~l~gq 156 (426)
T PRK10017 116 SGYDAIIQVGGSFFVDLYGVPQFEHALCAFMAKKPLYMIGH 156 (426)
T ss_pred HhCCEEEECCCCccccCcccHHHHHHHHHHHcCCCEEEECC
Confidence 7899999977743 12345779999999976
No 286
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=29.06 E-value=2.8e+02 Score=21.70 Aligned_cols=135 Identities=16% Similarity=0.203 Sum_probs=76.1
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeE-EEEecCCCCCCCCCCEEEeccCChhhhhCCCCeeEEEecCChhhH
Q psy16503 17 VIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRV-IWKWEGENMSGKIDKILLKSWAPQRDILDHPNVKVFISHGGFLGT 95 (244)
Q Consensus 17 vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~v-iw~~~~~~~~~~~~nv~~~~~~pq~~lL~h~~~~l~IthgG~~s~ 95 (244)
.|-|-+||.. ..+..+...+.|++++..+ .+....+..++ . ...|... ......+++|.-+|.-.=
T Consensus 4 ~V~IIMGS~S-----D~~~mk~Aa~~L~~fgi~ye~~VvSAHRTPe---~--m~~ya~~---a~~~g~~viIAgAGgAAH 70 (162)
T COG0041 4 KVGIIMGSKS-----DWDTMKKAAEILEEFGVPYEVRVVSAHRTPE---K--MFEYAEE---AEERGVKVIIAGAGGAAH 70 (162)
T ss_pred eEEEEecCcc-----hHHHHHHHHHHHHHcCCCeEEEEEeccCCHH---H--HHHHHHH---HHHCCCeEEEecCcchhh
Confidence 5778899983 3577888889999887533 33333332221 1 1122211 222678889986653111
Q ss_pred ---HHHHHhCCcEEecCCCc---chhhHHHHHHHcCceee-----cCCCCCCHHHHHHHHHHHhCChhHHHHHHHHHHHH
Q psy16503 96 ---TEALYSGVPIIGIPMFG---DQKANIRVVEKAGFGVT-----LPYDQITEETVLVALRTVLGNPSYKKRAEKVARLF 164 (244)
Q Consensus 96 ---~Eal~~gvP~i~vP~~~---dQ~~na~~~~~~G~g~~-----l~~~~~~~~~l~~ai~~ll~~~~y~~~a~~~s~~~ 164 (244)
+-|...-+|+|++|... +-.+-...++..-.|+- +... -|..-|...|-. +.|+.+++++.++.+..
T Consensus 71 LPGmvAa~T~lPViGVPv~s~~L~GlDSL~SiVQMP~GvPVaTvaIg~a-~NAallAa~ILa-~~d~~l~~kl~~~r~~~ 148 (162)
T COG0041 71 LPGMVAAKTPLPVIGVPVQSKALSGLDSLLSIVQMPAGVPVATVAIGNA-ANAALLAAQILA-IKDPELAEKLAEFREAQ 148 (162)
T ss_pred cchhhhhcCCCCeEeccCccccccchHHHHHHhcCCCCCeeEEEeecch-hhHHHHHHHHHc-CCCHHHHHHHHHHHHHH
Confidence 12334578999999863 22233444555544442 3322 244444444433 35888898888877666
Q ss_pred hC
Q psy16503 165 QD 166 (244)
Q Consensus 165 ~~ 166 (244)
.+
T Consensus 149 ~~ 150 (162)
T COG0041 149 TE 150 (162)
T ss_pred HH
Confidence 53
No 287
>PRK13057 putative lipid kinase; Reviewed
Probab=29.03 E-value=59 Score=27.73 Aligned_cols=30 Identities=27% Similarity=0.358 Sum_probs=25.2
Q ss_pred CCeeEEEecCChhhHHHHHH----hCCcEEecCC
Q psy16503 81 PNVKVFISHGGFLGTTEALY----SGVPIIGIPM 110 (244)
Q Consensus 81 ~~~~l~IthgG~~s~~Eal~----~gvP~i~vP~ 110 (244)
+..+.+|.-||=||+.|++. .++|+-++|.
T Consensus 49 ~~~d~iiv~GGDGTv~~v~~~l~~~~~~lgiiP~ 82 (287)
T PRK13057 49 DGVDLVIVGGGDGTLNAAAPALVETGLPLGILPL 82 (287)
T ss_pred cCCCEEEEECchHHHHHHHHHHhcCCCcEEEECC
Confidence 56789999999999999863 4689899996
No 288
>PRK14092 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Probab=28.48 E-value=1.1e+02 Score=24.09 Aligned_cols=31 Identities=13% Similarity=0.320 Sum_probs=21.8
Q ss_pred CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCC
Q psy16503 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQ 48 (244)
Q Consensus 15 ~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~ 48 (244)
...+|+++||... .+.+.++..++.+.+.+.
T Consensus 7 ~~~v~i~LGSNlg---~~~~~l~~A~~~L~~~~~ 37 (163)
T PRK14092 7 SALAYVGLGANLG---DAAATLRSVLAELAAAPG 37 (163)
T ss_pred CCEEEEEecCchH---hHHHHHHHHHHHHHhCCC
Confidence 5688999999953 245666666777766554
No 289
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=28.32 E-value=1.9e+02 Score=27.27 Aligned_cols=76 Identities=14% Similarity=0.170 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhcCCCeEEEEecCCCC-C---C--CCCCEEEeccC--------ChhhhhCCCCeeEEEecCC------hh
Q psy16503 34 DKRKAFLRAFEQIPQRVIWKWEGENM-S---G--KIDKILLKSWA--------PQRDILDHPNVKVFISHGG------FL 93 (244)
Q Consensus 34 ~~~~~i~~al~~~~~~viw~~~~~~~-~---~--~~~nv~~~~~~--------pq~~lL~h~~~~l~IthgG------~~ 93 (244)
...+.+++.|.+.+.+.+.-+++... + . ..+++....-. -...-..+.+.-++++|.| .+
T Consensus 14 ~~~~~l~~~L~~~GV~~vFgvpG~~~~~l~dal~~~~~i~~i~~~hE~~A~~~Adgyar~tg~~gv~~~t~GpG~~N~l~ 93 (564)
T PRK08155 14 TGAELIVRLLERQGIRIVTGIPGGAILPLYDALSQSTQIRHILARHEQGAGFIAQGMARTTGKPAVCMACSGPGATNLVT 93 (564)
T ss_pred cHHHHHHHHHHHcCCCEEEeCCCcccHHHHHHHhccCCceEEEeccHHHHHHHHHHHHHHcCCCeEEEECCCCcHHHHHH
Confidence 45778888888888877776665321 1 1 12234333211 1111112245566777766 35
Q ss_pred hHHHHHHhCCcEEecC
Q psy16503 94 GTTEALYSGVPIIGIP 109 (244)
Q Consensus 94 s~~Eal~~gvP~i~vP 109 (244)
++.||...++|+|++.
T Consensus 94 gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 94 AIADARLDSIPLVCIT 109 (564)
T ss_pred HHHHHHhcCCCEEEEe
Confidence 7899999999999983
No 290
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=28.21 E-value=1.3e+02 Score=23.91 Aligned_cols=133 Identities=11% Similarity=0.066 Sum_probs=65.1
Q ss_pred CCchHHHHHHhcCCCceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecC-CC------CCCCCCCEE-Eecc-
Q psy16503 1 MNETDIKKFLDESVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEG-EN------MSGKIDKIL-LKSW- 71 (244)
Q Consensus 1 ~~p~~l~~~l~~~~~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~-~~------~~~~~~nv~-~~~~- 71 (244)
++|+.+.+.+.++++|++++..|... ..+..+.+.+..++++..++-.... .. .++ |-++. +..+
T Consensus 22 ~~p~~aa~lI~~AKrPlIivG~ga~~-----~~ea~e~l~elaEkl~iPVvtT~~~~~~~~~kgv~~~-~~~lg~lg~~~ 95 (171)
T PRK00945 22 VSPKIAAMMIKKAKRPLLVVGSLLLD-----DEELLDRAVKIAKKANIPVAATGGSYKGLIDKGVDAK-YINLHELTNYL 95 (171)
T ss_pred cCHHHHHHHHHhCCCcEEEECcCccc-----cchHHHHHHHHHHHHCCCEEEccccccccccCCccCC-cccHHHHHhhc
Confidence 36888999999988888877766652 1233444455444455555544331 11 111 22221 1111
Q ss_pred -CChhhhh-CCCCeeEEEecCC----hhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHH
Q psy16503 72 -APQRDIL-DHPNVKVFISHGG----FLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALR 145 (244)
Q Consensus 72 -~pq~~lL-~h~~~~l~IthgG----~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~ 145 (244)
-|.-+.+ +..++|++|-=|- .+-+.-++-+=-|+-.+-+-..-+-||. +...+++.++..+.++
T Consensus 96 ~~p~~e~~~g~~~~DlvlfvG~~~~~~~~~l~~lk~f~~~~~~~~~~~y~~~a~----------~s~~~~~~~~~~~~l~ 165 (171)
T PRK00945 96 KDPNWKGLDGNGNYDLVIFIGVTYYYASQGLSALKHFSPLKTITIDRYYHPNAD----------MSFPNLSKEEYLEYLD 165 (171)
T ss_pred cCchhhhhcCCCCcCEEEEecCCchhHHHHHHHHhhcCCceEEEecCCcCCCCc----------eecCCCCHHHHHHHHH
Confidence 2333333 2235677666553 1333344444445433322111122221 1123456788888888
Q ss_pred HHhC
Q psy16503 146 TVLG 149 (244)
Q Consensus 146 ~ll~ 149 (244)
+++.
T Consensus 166 ~li~ 169 (171)
T PRK00945 166 ELID 169 (171)
T ss_pred HHHh
Confidence 8764
No 291
>PRK13059 putative lipid kinase; Reviewed
Probab=28.03 E-value=60 Score=27.86 Aligned_cols=30 Identities=20% Similarity=0.245 Sum_probs=24.7
Q ss_pred CCeeEEEecCChhhHHHHHH------hCCcEEecCC
Q psy16503 81 PNVKVFISHGGFLGTTEALY------SGVPIIGIPM 110 (244)
Q Consensus 81 ~~~~l~IthgG~~s~~Eal~------~gvP~i~vP~ 110 (244)
...+.+|.-||=||+.|++. .++|+-++|.
T Consensus 55 ~~~d~vi~~GGDGTv~evv~gl~~~~~~~~lgviP~ 90 (295)
T PRK13059 55 ESYKYILIAGGDGTVDNVVNAMKKLNIDLPIGILPV 90 (295)
T ss_pred cCCCEEEEECCccHHHHHHHHHHhcCCCCcEEEECC
Confidence 56789999999999998852 3588888996
No 292
>PRK09932 glycerate kinase II; Provisional
Probab=27.96 E-value=2.4e+02 Score=25.46 Aligned_cols=73 Identities=16% Similarity=0.151 Sum_probs=41.9
Q ss_pred ccCChhhhhCCCCeeEEEecCC------------hhhHHHHHHhCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCH
Q psy16503 70 SWAPQRDILDHPNVKVFISHGG------------FLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITE 137 (244)
Q Consensus 70 ~~~pq~~lL~h~~~~l~IthgG------------~~s~~Eal~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~ 137 (244)
+++...+.+ ..+|++||--| .+-..-|-.+++|++++-=.- ..+...+.+.|+--+....+ .+
T Consensus 274 ~~~~l~~~l--~~ADlVITGEG~~D~Qt~~GK~p~~Va~~A~~~~~Pvi~i~G~~--~~~~~~~~~~g~~~~~~i~~-~~ 348 (381)
T PRK09932 274 NAVNLEQAV--QGAALVITGEGRIDSQTAGGKAPLGVASVAKQFNVPVIGIAGVL--GDGVEVVHQYGIDAVFSILP-RL 348 (381)
T ss_pred HhcChHHHh--ccCCEEEECCCcccccccCCccHHHHHHHHHHcCCCEEEEeccc--CCChHHHHhcCceEEEEcCC-CC
Confidence 445566677 78999999877 233344566899999984321 12234566777754443222 12
Q ss_pred HHHHHHHHHH
Q psy16503 138 ETVLVALRTV 147 (244)
Q Consensus 138 ~~l~~ai~~l 147 (244)
..+.+++++.
T Consensus 349 ~~l~~a~~~~ 358 (381)
T PRK09932 349 APLAEVLASG 358 (381)
T ss_pred CCHHHHHHHH
Confidence 3355555443
No 293
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=27.89 E-value=1.7e+02 Score=25.69 Aligned_cols=92 Identities=13% Similarity=0.210 Sum_probs=49.3
Q ss_pred HHHHHHhcCCCceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEE-EecCCCCCCCCCCEEEeccCC-hhhhhCCCC
Q psy16503 5 DIKKFLDESVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIW-KWEGENMSGKIDKILLKSWAP-QRDILDHPN 82 (244)
Q Consensus 5 ~l~~~l~~~~~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw-~~~~~~~~~~~~nv~~~~~~p-q~~lL~h~~ 82 (244)
++.+.+....+++++|+ |.... ....+.+.+.|+..+..+.+ .+.+ .|+. +-+. -.+.....+
T Consensus 13 ~l~~~~~~~~~r~livt-~~~~~-----~~~~~~v~~~L~~~~i~~~~~~~~~-----~p~~----~~v~~~~~~~~~~~ 77 (351)
T cd08170 13 ELGEYLARLGKRALIIA-DEFVL-----DLVGAKIEESLAAAGIDARFEVFGG-----ECTR----AEIERLAEIARDNG 77 (351)
T ss_pred HHHHHHHHhCCeEEEEE-CHHHH-----HHHHHHHHHHHHhCCCeEEEEEeCC-----cCCH----HHHHHHHHHHhhcC
Confidence 34445554334566666 54422 25677788888766554321 1221 1211 1111 112333358
Q ss_pred eeEEEecCChhhHHHH----HHhCCcEEecCCC
Q psy16503 83 VKVFISHGGFLGTTEA----LYSGVPIIGIPMF 111 (244)
Q Consensus 83 ~~l~IthgG~~s~~Ea----l~~gvP~i~vP~~ 111 (244)
+|++|.=||...+=-| +..++|++.+|-.
T Consensus 78 ~D~IIavGGGS~iD~aK~ia~~~~~P~iaIPTT 110 (351)
T cd08170 78 ADVVIGIGGGKTLDTAKAVADYLGAPVVIVPTI 110 (351)
T ss_pred CCEEEEecCchhhHHHHHHHHHcCCCEEEeCCc
Confidence 8999999886443222 3358999999963
No 294
>PF10854 DUF2649: Protein of unknown function (DUF2649); InterPro: IPR021217 This entry is represented by Spiroplasma phage 1-C74, Orf10. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members in this family of proteins are also annotated as Plectrovirus orf 10 transmembrane proteins however currently no function is known.
Probab=27.82 E-value=1.7e+02 Score=18.86 Aligned_cols=36 Identities=19% Similarity=0.391 Sum_probs=23.9
Q ss_pred ccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16503 194 ASLELYWWQYILLDVIIALILLIAAMVWSIQWLVRY 229 (244)
Q Consensus 194 ~~~~~~~~~~~~lDv~~~~~~~~~~~~~~~~~~~~~ 229 (244)
-+...+-|--..+-++.+++++.-..+|.+++++.+
T Consensus 30 w~ltqneYlt~MiGiWiVilFLtWf~lwm~fKiv~~ 65 (67)
T PF10854_consen 30 WNLTQNEYLTIMIGIWIVILFLTWFLLWMVFKIVGY 65 (67)
T ss_pred eccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334455566677788877777777777777766643
No 295
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=27.73 E-value=66 Score=27.41 Aligned_cols=68 Identities=15% Similarity=0.267 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecCCCCCCCCCCEEEeccCChhhhhCCCCeeEEEecCChhhHHHHHHh-----CCcEEe
Q psy16503 33 SDKRKAFLRAFEQIPQRVIWKWEGENMSGKIDKILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYS-----GVPIIG 107 (244)
Q Consensus 33 ~~~~~~i~~al~~~~~~viw~~~~~~~~~~~~nv~~~~~~pq~~lL~h~~~~l~IthgG~~s~~Eal~~-----gvP~i~ 107 (244)
.+..+.+.+.+.+.+..+.+...... +... .... +... ...+++|.-||=||+.|++.. ..|.++
T Consensus 18 ~~~~~~i~~~l~~~~~~~~~~~t~~~--~~~~-----~~~~--~~~~-~~~d~ivv~GGDGTl~~v~~~l~~~~~~~~lg 87 (293)
T TIGR00147 18 NKPLREVIMLLREEGMEIHVRVTWEK--GDAA-----RYVE--EARK-FGVDTVIAGGGDGTINEVVNALIQLDDIPALG 87 (293)
T ss_pred HHHHHHHHHHHHHCCCEEEEEEecCc--ccHH-----HHHH--HHHh-cCCCEEEEECCCChHHHHHHHHhcCCCCCcEE
Confidence 45566777778776655433222110 0000 0011 1222 467899999999999997653 345555
Q ss_pred -cCC
Q psy16503 108 -IPM 110 (244)
Q Consensus 108 -vP~ 110 (244)
+|.
T Consensus 88 iiP~ 91 (293)
T TIGR00147 88 ILPL 91 (293)
T ss_pred EEcC
Confidence 896
No 296
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=27.69 E-value=1.3e+02 Score=17.49 Aligned_cols=9 Identities=22% Similarity=-0.005 Sum_probs=3.6
Q ss_pred HHHHHHhhc
Q psy16503 227 VRYALITYY 235 (244)
Q Consensus 227 ~~~~~~~~~ 235 (244)
+.+.|.+.+
T Consensus 24 ~~YaCcykk 32 (38)
T PF02439_consen 24 FYYACCYKK 32 (38)
T ss_pred HHHHHHHcc
Confidence 334444433
No 297
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=27.38 E-value=1.2e+02 Score=27.25 Aligned_cols=18 Identities=33% Similarity=0.350 Sum_probs=12.3
Q ss_pred hhCCCCeeEEEecCChhh
Q psy16503 77 ILDHPNVKVFISHGGFLG 94 (244)
Q Consensus 77 lL~h~~~~l~IthgG~~s 94 (244)
+....++|.+|.=||..+
T Consensus 83 ~~~~~~~D~IiaiGGGS~ 100 (383)
T PRK09860 83 LLKENNCDSVISLGGGSP 100 (383)
T ss_pred HHHHcCCCEEEEeCCchH
Confidence 333468899998888533
No 298
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=27.33 E-value=18 Score=25.96 Aligned_cols=29 Identities=7% Similarity=0.189 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy16503 206 LDVIIALILLIAAMVWSIQWLVRYALITY 234 (244)
Q Consensus 206 lDv~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (244)
.+++++.++.+++++.+++-+..+++.|.
T Consensus 61 ~~iili~lls~v~IlVily~IyYFVILRe 89 (101)
T PF06024_consen 61 GNIILISLLSFVCILVILYAIYYFVILRE 89 (101)
T ss_pred ccchHHHHHHHHHHHHHHhhheEEEEEec
Confidence 34444444444444444333333444443
No 299
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=27.32 E-value=61 Score=30.57 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=27.5
Q ss_pred hCCCCeeEEEecCChhhHHHHHHhCCcEEecCCCc
Q psy16503 78 LDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFG 112 (244)
Q Consensus 78 L~h~~~~l~IthgG~~s~~Eal~~gvP~i~vP~~~ 112 (244)
+.+..+|++|+.||...+... +..+|+|-++..+
T Consensus 50 ~~~~~~dviIsrG~ta~~i~~-~~~iPVv~i~~s~ 83 (526)
T TIGR02329 50 LGAERCDVVVAGGSNGAYLKS-RLSLPVIVIKPTG 83 (526)
T ss_pred HHhCCCcEEEECchHHHHHHH-hCCCCEEEecCCh
Confidence 334679999999998888887 4579999998854
No 300
>KOG4433|consensus
Probab=27.21 E-value=4.5e+02 Score=24.59 Aligned_cols=25 Identities=8% Similarity=0.175 Sum_probs=16.9
Q ss_pred cCCccHHHHHHHHHHHHHHHHHHHH
Q psy16503 195 SLELYWWQYILLDVIIALILLIAAM 219 (244)
Q Consensus 195 ~~~~~~~~~~~lDv~~~~~~~~~~~ 219 (244)
....++|++|-+--++.++++.+++
T Consensus 199 ~~~~~~yE~~RW~~~v~lL~l~Lvv 223 (526)
T KOG4433|consen 199 AEQVDFYESYRWLAYVLLLTLLLVV 223 (526)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999988776665544333
No 301
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=26.97 E-value=71 Score=28.10 Aligned_cols=35 Identities=26% Similarity=0.382 Sum_probs=28.0
Q ss_pred hhCCCCeeEEEecCChhhHHHHHH---hCCcEEecCCC
Q psy16503 77 ILDHPNVKVFISHGGFLGTTEALY---SGVPIIGIPMF 111 (244)
Q Consensus 77 lL~h~~~~l~IthgG~~s~~Eal~---~gvP~i~vP~~ 111 (244)
.|..-+.+.+|.=||-+|+.-|.. .|+|++++|-.
T Consensus 89 ~l~~~~Id~LivIGGdgS~~~a~~L~~~gi~vigiPkT 126 (324)
T TIGR02483 89 NLKELGLDALIAIGGDGTLGIARRLADKGLPVVGVPKT 126 (324)
T ss_pred HHHHcCCCEEEEECCchHHHHHHHHHhcCCCEEeeccc
Confidence 344467899999999998877744 59999999964
No 302
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=26.87 E-value=2.4e+02 Score=22.58 Aligned_cols=27 Identities=15% Similarity=0.156 Sum_probs=17.9
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEE
Q psy16503 17 VIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIW 52 (244)
Q Consensus 17 vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw 52 (244)
+++|..|.. .+..+.++|++.+..+.+
T Consensus 2 i~iid~g~~---------n~~~v~~~l~~~g~~~~~ 28 (201)
T PRK13152 2 IALIDYKAG---------NLNSVAKAFEKIGAINFI 28 (201)
T ss_pred EEEEECCCC---------cHHHHHHHHHHCCCeEEE
Confidence 456666665 156778888888766554
No 303
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=26.72 E-value=2.3e+02 Score=25.17 Aligned_cols=95 Identities=12% Similarity=0.146 Sum_probs=48.5
Q ss_pred HHHHHHhcCC-CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCCCCCCCCCEEEeccCChhhhhCCCCe
Q psy16503 5 DIKKFLDESV-NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGKIDKILLKSWAPQRDILDHPNV 83 (244)
Q Consensus 5 ~l~~~l~~~~-~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~~~~~~~nv~~~~~~pq~~lL~h~~~ 83 (244)
++.+.+.+.. +++++|+-++.. .....+.+.+.|++.+..+.+. ++ ....|+ . ..-..-.+.+...++
T Consensus 13 ~l~~~~~~~~~~r~livt~~~~~-----~~g~~~~v~~~L~~~gi~~~~~-~~--v~~~p~-~--~~v~~~~~~~~~~~~ 81 (375)
T cd08194 13 ETGAVLADLGGKRPLIVTDKVMV-----KLGLVDKLTDSLKKEGIESAIF-DD--VVSEPT-D--ESVEEGVKLAKEGGC 81 (375)
T ss_pred HHHHHHHHcCCCeEEEEcCcchh-----hcchHHHHHHHHHHCCCeEEEE-CC--CCCCcC-H--HHHHHHHHHHHhcCC
Confidence 4455555432 456666644332 1234566777777666554432 21 111111 0 000011233333578
Q ss_pred eEEEecCChhhHHHH---HH--------------------hCCcEEecCCC
Q psy16503 84 KVFISHGGFLGTTEA---LY--------------------SGVPIIGIPMF 111 (244)
Q Consensus 84 ~l~IthgG~~s~~Ea---l~--------------------~gvP~i~vP~~ 111 (244)
|.+|.=||. |+..+ ++ .++|++++|..
T Consensus 82 D~IIaiGGG-S~~D~AKaia~~~~~~~~~~~~~~~~~~~~~~~P~i~IPTt 131 (375)
T cd08194 82 DVIIALGGG-SPIDTAKAIAVLATNGGSIRDYKGPRIVDKPGLPLIAIPTT 131 (375)
T ss_pred CEEEEeCCc-hHHHHHHHHHHHHhCCCCHHHHhCcccccCCCCCEEEECCC
Confidence 999998885 44442 22 36899999974
No 304
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=26.62 E-value=58 Score=27.86 Aligned_cols=30 Identities=30% Similarity=0.355 Sum_probs=25.7
Q ss_pred CCeeEEEecCChhhHHHHHHh----CCcEEecCC
Q psy16503 81 PNVKVFISHGGFLGTTEALYS----GVPIIGIPM 110 (244)
Q Consensus 81 ~~~~l~IthgG~~s~~Eal~~----gvP~i~vP~ 110 (244)
..+|++|+-||=||+..++.. ++|+++++.
T Consensus 75 ~~~D~ii~lGGDGT~L~~~~~~~~~~~Pilgin~ 108 (285)
T PF01513_consen 75 EGVDLIIVLGGDGTFLRAARLFGDYDIPILGINT 108 (285)
T ss_dssp CCSSEEEEEESHHHHHHHHHHCTTST-EEEEEES
T ss_pred cCCCEEEEECCCHHHHHHHHHhccCCCcEEeecC
Confidence 799999999999999999763 679999975
No 305
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=26.61 E-value=70 Score=28.37 Aligned_cols=42 Identities=21% Similarity=0.356 Sum_probs=32.2
Q ss_pred CCeeEEEecCChhhHHHHHHh---CCcEEecCC--------CcchhhHHHHHH
Q psy16503 81 PNVKVFISHGGFLGTTEALYS---GVPIIGIPM--------FGDQKANIRVVE 122 (244)
Q Consensus 81 ~~~~l~IthgG~~s~~Eal~~---gvP~i~vP~--------~~dQ~~na~~~~ 122 (244)
..+++++.-||-||.-..+.. .+|++++|. |.=++.-|.++.
T Consensus 99 ~gVdlIvfaGGDGTarDVa~av~~~vPvLGipaGvk~~SgvfA~~P~~aa~l~ 151 (355)
T COG3199 99 RGVDLIVFAGGDGTARDVAEAVGADVPVLGIPAGVKNYSGVFALSPEDAARLL 151 (355)
T ss_pred cCceEEEEeCCCccHHHHHhhccCCCceEeeccccceeccccccChHHHHHHH
Confidence 589999999998887666665 999999995 345666555554
No 306
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=26.25 E-value=3.6e+02 Score=23.15 Aligned_cols=77 Identities=13% Similarity=0.192 Sum_probs=40.7
Q ss_pred CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCCCCCCCCCEEEeccCChhhhhCCCCeeEEEecCCh-h
Q psy16503 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGKIDKILLKSWAPQRDILDHPNVKVFISHGGF-L 93 (244)
Q Consensus 15 ~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~~~~~~~nv~~~~~~pq~~lL~h~~~~l~IthgG~-~ 93 (244)
+.+.++..|++ ....+.+..-|..++..+++..+...... +...+....+-++|++.|. .
T Consensus 43 ~~I~i~G~G~S-------~~~A~~~~~~l~~~g~~~~~~~~~~~~~~------------~~~~~~~~d~~i~iS~sG~t~ 103 (321)
T PRK11543 43 GKVVVSGIGKS-------GHIGKKIAATLASTGTPAFFVHPAEALHG------------DLGMIESRDVMLFISYSGGAK 103 (321)
T ss_pred CcEEEEecChh-------HHHHHHHHHHHHcCCCceeecChHHHhhC------------CcCccCCCCEEEEEeCCCCcH
Confidence 35677777766 23455556666666665554322111000 0011122345578888874 2
Q ss_pred ----hHHHHHHhCCcEEecCC
Q psy16503 94 ----GTTEALYSGVPIIGIPM 110 (244)
Q Consensus 94 ----s~~Eal~~gvP~i~vP~ 110 (244)
.+..|-..|+|+|++--
T Consensus 104 ~~~~~~~~ak~~g~~vI~iT~ 124 (321)
T PRK11543 104 ELDLIIPRLEDKSIALLAMTG 124 (321)
T ss_pred HHHHHHHHHHHcCCeEEEEEC
Confidence 33444568999999843
No 307
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=26.24 E-value=1.7e+02 Score=26.21 Aligned_cols=30 Identities=13% Similarity=0.280 Sum_probs=20.6
Q ss_pred CCeeEEEecCChhhHHHHH---H--------------------hCCcEEecCCC
Q psy16503 81 PNVKVFISHGGFLGTTEAL---Y--------------------SGVPIIGIPMF 111 (244)
Q Consensus 81 ~~~~l~IthgG~~s~~Eal---~--------------------~gvP~i~vP~~ 111 (244)
.++|++|.=||. |+..+. + .++|+|.+|-.
T Consensus 85 ~~~D~IIaiGGG-S~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~P~iaIPTT 137 (382)
T cd08187 85 EKVDFILAVGGG-SVIDSAKAIAAGAPYDGDVWDFFTGKAKIEKALPVGTVLTL 137 (382)
T ss_pred cCCCEEEEeCCh-HHHHHHHHHHhHhhCCCCHHHHhcccCCCCCCCCEEEEeCC
Confidence 578999988884 333322 1 26899999973
No 308
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=26.09 E-value=89 Score=24.31 Aligned_cols=29 Identities=21% Similarity=0.370 Sum_probs=22.1
Q ss_pred CeeEEEecCC------hhhHHHHHHhCCcEEecCC
Q psy16503 82 NVKVFISHGG------FLGTTEALYSGVPIIGIPM 110 (244)
Q Consensus 82 ~~~l~IthgG------~~s~~Eal~~gvP~i~vP~ 110 (244)
+.-++++|.| .+.+.||...++|+|++.-
T Consensus 63 ~~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g 97 (164)
T cd07039 63 KLGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAG 97 (164)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEec
Confidence 4556666666 4578899999999999953
No 309
>smart00096 UTG Uteroglobin.
Probab=26.09 E-value=2.1e+02 Score=19.11 Aligned_cols=50 Identities=12% Similarity=0.228 Sum_probs=37.4
Q ss_pred CHHHHHHHHHHHhCChhHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHc
Q psy16503 136 TEETVLVALRTVLGNPSYKKRAEKVARLFQDRPMPPLDTAIYWIEHVIRH 185 (244)
Q Consensus 136 ~~~~l~~ai~~ll~~~~y~~~a~~~s~~~~~~~~~~~~~a~~~ie~~~~~ 185 (244)
|.++....+..--.|++..+++.++.+-...=+....+.+...++.+...
T Consensus 17 t~~~Y~~~l~~y~~~~~~~ea~~~lK~cvD~L~~~~k~~i~~ll~kI~~s 66 (69)
T smart00096 17 TPSSYEASLKQFKPDPDMLEAGRQLKKLVDTLPQETRENILKLTEKIYTS 66 (69)
T ss_pred CHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 66778888888888888888888888777664445556677777777654
No 310
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=25.97 E-value=2.9e+02 Score=21.59 Aligned_cols=35 Identities=29% Similarity=0.365 Sum_probs=20.1
Q ss_pred CeeEEEecCChhh---------HHHHHHhCCcEEecCCCcchhhH
Q psy16503 82 NVKVFISHGGFLG---------TTEALYSGVPIIGIPMFGDQKAN 117 (244)
Q Consensus 82 ~~~l~IthgG~~s---------~~Eal~~gvP~i~vP~~~dQ~~n 117 (244)
+.+.+|.-||.++ +.+++..++|++++-+ +-|..+
T Consensus 42 ~~dgvil~gG~~~~~~~~~~~~i~~~~~~~~PvlGIC~-G~Qlla 85 (184)
T cd01743 42 NPDAIVISPGPGHPEDAGISLEIIRALAGKVPILGVCL-GHQAIA 85 (184)
T ss_pred CCCEEEECCCCCCcccchhHHHHHHHHhcCCCEEEECH-hHHHHH
Confidence 3555555444443 4445667899999843 444444
No 311
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=25.89 E-value=3.5e+02 Score=21.76 Aligned_cols=162 Identities=11% Similarity=0.080 Sum_probs=77.5
Q ss_pred HHhcCCCceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCC--CCCC--CCCCEEEeccCChhhhhCCCCee
Q psy16503 9 FLDESVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGE--NMSG--KIDKILLKSWAPQRDILDHPNVK 84 (244)
Q Consensus 9 ~l~~~~~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~--~~~~--~~~nv~~~~~~pq~~lL~h~~~~ 84 (244)
|++-.++++++|..|... ...++.|...+..+.+..+.. ++.. ....+..........-+ ..++
T Consensus 5 ~l~l~~k~vLVIGgG~va----------~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l--~~ad 72 (202)
T PRK06718 5 MIDLSNKRVVIVGGGKVA----------GRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDI--VDAF 72 (202)
T ss_pred EEEcCCCEEEEECCCHHH----------HHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhc--CCce
Confidence 344455556666555552 223444544565655443321 1111 11235444443334445 5788
Q ss_pred EEEecCChhhHHHHHH----hCCcEEec--CCCcchhhHHHHHHHcCceeecCCCCCC---HHHHHHHHHHHhCC--hhH
Q psy16503 85 VFISHGGFLGTTEALY----SGVPIIGI--PMFGDQKANIRVVEKAGFGVTLPYDQIT---EETVLVALRTVLGN--PSY 153 (244)
Q Consensus 85 l~IthgG~~s~~Eal~----~gvP~i~v--P~~~dQ~~na~~~~~~G~g~~l~~~~~~---~~~l~~ai~~ll~~--~~y 153 (244)
++|+--+...+.+.++ .++|+-.+ |-..| +..-..+.+-++-+.+..+--+ +..|++.|++++.. ..+
T Consensus 73 lViaaT~d~elN~~i~~~a~~~~lvn~~d~~~~~~-f~~Pa~~~~g~l~iaIsT~G~sP~la~~lr~~ie~~~~~~~~~~ 151 (202)
T PRK06718 73 LVIAATNDPRVNEQVKEDLPENALFNVITDAESGN-VVFPSALHRGKLTISVSTDGASPKLAKKIRDELEALYDESYESY 151 (202)
T ss_pred EEEEcCCCHHHHHHHHHHHHhCCcEEECCCCccCe-EEEeeEEEcCCeEEEEECCCCChHHHHHHHHHHHHHcchhHHHH
Confidence 8888766555555544 56665444 22111 1111222223344444432222 36678888877622 335
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHHH
Q psy16503 154 KKRAEKVARLFQDRPMPPLDTAIYWIEHVIR 184 (244)
Q Consensus 154 ~~~a~~~s~~~~~~~~~~~~~a~~~ie~~~~ 184 (244)
-+.+.++...++.+-.++.++-..| +.++.
T Consensus 152 ~~~~~~~R~~~k~~~~~~~~R~~~~-~~~~~ 181 (202)
T PRK06718 152 IDFLYECRQKIKELQIEKREKQILL-QEVLS 181 (202)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHH-HHHhh
Confidence 5666677777766444444443333 44443
No 312
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=25.76 E-value=3.8e+02 Score=22.06 Aligned_cols=119 Identities=19% Similarity=0.205 Sum_probs=64.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCCCCCCCCCEEEeccCCh-hhh---hC-C-CCeeE-EEecCChhhH
Q psy16503 23 GSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGKIDKILLKSWAPQ-RDI---LD-H-PNVKV-FISHGGFLGT 95 (244)
Q Consensus 23 Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~~~~~~~nv~~~~~~pq-~~l---L~-h-~~~~l-~IthgG~~s~ 95 (244)
|.+.....++.+....+++.+.+.+...|=...+...+.. ++.+. .++ +. . +.+.+ .++.+|...+
T Consensus 8 G~q~~~~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~-------p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i 80 (265)
T cd03174 8 GLQSEGATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAV-------PQMEDDWEVLRAIRKLVPNVKLQALVRNREKGI 80 (265)
T ss_pred cccCCCCCCCHHHHHHHHHHHHHcCCCEEEeccCcCcccc-------ccCCCHHHHHHHHHhccCCcEEEEEccCchhhH
Confidence 3344444567888888888888887654443332211111 11111 111 11 0 23455 6677778888
Q ss_pred HHHHHhCCcEEecCCCcc--------------hhh----HHHHHHHcCceeecCC---CC--CCHHHHHHHHHHHh
Q psy16503 96 TEALYSGVPIIGIPMFGD--------------QKA----NIRVVEKAGFGVTLPY---DQ--ITEETVLVALRTVL 148 (244)
Q Consensus 96 ~Eal~~gvP~i~vP~~~d--------------Q~~----na~~~~~~G~g~~l~~---~~--~~~~~l~~ai~~ll 148 (244)
..+..+|+..+.++.... ... ..+.+.+.|.-+.+.. .. .+.+.+.+.++++.
T Consensus 81 ~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~ 156 (265)
T cd03174 81 ERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALE 156 (265)
T ss_pred HHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHH
Confidence 888899999888876443 222 2234455566555443 23 45566666665554
No 313
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=25.75 E-value=76 Score=27.83 Aligned_cols=38 Identities=24% Similarity=0.380 Sum_probs=0.0
Q ss_pred hhhCCCCeeEEEecCChhhHHHHHH---hCCcEEecCCCcc
Q psy16503 76 DILDHPNVKVFISHGGFLGTTEALY---SGVPIIGIPMFGD 113 (244)
Q Consensus 76 ~lL~h~~~~l~IthgG~~s~~Eal~---~gvP~i~vP~~~d 113 (244)
+.|..-+.+.+|.=||-+|+.-|.. +|+|++++|-.-|
T Consensus 86 ~~l~~~~Id~Li~IGGdgs~~~a~~L~e~~i~vigiPkTID 126 (317)
T cd00763 86 EQLKKHGIDALVVIGGDGSYMGAMRLTEHGFPCVGLPGTID 126 (317)
T ss_pred HHHHHcCCCEEEEECCchHHHHHHHHHHcCCCEEEeccccc
No 314
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=25.70 E-value=1.2e+02 Score=23.48 Aligned_cols=10 Identities=0% Similarity=0.245 Sum_probs=5.4
Q ss_pred cHHHHHHHHH
Q psy16503 199 YWWQYILLDV 208 (244)
Q Consensus 199 ~~~~~~~lDv 208 (244)
+||.-|+.-+
T Consensus 25 sffsthm~tI 34 (189)
T PF05568_consen 25 SFFSTHMYTI 34 (189)
T ss_pred cHHHHHHHHH
Confidence 5666555433
No 315
>TIGR01358 DAHP_synth_II 3-deoxy-7-phosphoheptulonate synthase, class II. Homologs scoring between trusted and noise cutoff include proteins involved in antibiotic biosynthesis; one example is active as this enzyme, while another acts on an amino analog.
Probab=25.68 E-value=1.5e+02 Score=27.29 Aligned_cols=51 Identities=22% Similarity=0.412 Sum_probs=36.1
Q ss_pred CCchHHHHHHhcC----C-CceEEE-EcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecC
Q psy16503 1 MNETDIKKFLDES----V-NGVIYF-SMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEG 56 (244)
Q Consensus 1 ~~p~~l~~~l~~~----~-~~vI~v-s~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~ 56 (244)
|+|+++.+.++.- + .++.+| =||..- -.+.+-.++++.++.+..|+|.++.
T Consensus 290 ~~p~~l~~L~~~LnP~~epGRlTLI~RmGa~k-----V~~~LP~li~aV~~~G~~VvW~cDP 346 (443)
T TIGR01358 290 MTPDELLRLIERLNPENEPGRLTLISRMGADK-----IADKLPPLLRAVKAAGRRVVWVCDP 346 (443)
T ss_pred CCHHHHHHHHHHhCCCCCCceEEEEeccCchH-----HHHhHHHHHHHHHHcCCceEEeecC
Confidence 5788888777642 1 334444 466552 2567888999999999999999985
No 316
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=25.49 E-value=2.9e+02 Score=25.65 Aligned_cols=74 Identities=19% Similarity=0.318 Sum_probs=52.0
Q ss_pred hhhC-CCCeeEEEecCC---------h-----hhHHHHHHhCCcEEec-----CCCcchhhHHHHHHH-cCce-eecCCC
Q psy16503 76 DILD-HPNVKVFISHGG---------F-----LGTTEALYSGVPIIGI-----PMFGDQKANIRVVEK-AGFG-VTLPYD 133 (244)
Q Consensus 76 ~lL~-h~~~~l~IthgG---------~-----~s~~Eal~~gvP~i~v-----P~~~dQ~~na~~~~~-~G~g-~~l~~~ 133 (244)
.++. |....++||-.| + -.+.|.-..|+|.+++ |...+....+..+++ .+.- +.++..
T Consensus 139 kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~~~kPfiivlN~~dp~~~et~~l~~~l~eky~vpvl~v~c~ 218 (492)
T TIGR02836 139 KVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKELNKPFIILLNSTHPYHPETEALRQELEEKYDVPVLAMDVE 218 (492)
T ss_pred HHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHhcCCCEEEEEECcCCCCchhHHHHHHHHHHhCCceEEEEHH
Confidence 4566 888899999444 2 3455667789999887 444444434445543 4765 567778
Q ss_pred CCCHHHHHHHHHHHhC
Q psy16503 134 QITEETVLVALRTVLG 149 (244)
Q Consensus 134 ~~~~~~l~~ai~~ll~ 149 (244)
+++.+++.+.++++|.
T Consensus 219 ~l~~~DI~~il~~vL~ 234 (492)
T TIGR02836 219 SMRESDILSVLEEVLY 234 (492)
T ss_pred HcCHHHHHHHHHHHHh
Confidence 8999999999999986
No 317
>PRK03202 6-phosphofructokinase; Provisional
Probab=25.31 E-value=85 Score=27.56 Aligned_cols=34 Identities=26% Similarity=0.434 Sum_probs=27.7
Q ss_pred hCCCCeeEEEecCChhhHHHHHH---hCCcEEecCCC
Q psy16503 78 LDHPNVKVFISHGGFLGTTEALY---SGVPIIGIPMF 111 (244)
Q Consensus 78 L~h~~~~l~IthgG~~s~~Eal~---~gvP~i~vP~~ 111 (244)
|..-+.+.+|.=||-+|+.-|.. +++|++++|-.
T Consensus 89 l~~~~Id~Li~IGGd~s~~~a~~L~e~~i~vigiPkT 125 (320)
T PRK03202 89 LKKLGIDALVVIGGDGSYMGAKRLTEHGIPVIGLPGT 125 (320)
T ss_pred HHHcCCCEEEEeCChHHHHHHHHHHhcCCcEEEeccc
Confidence 44468899999999998877644 59999999964
No 318
>COG1691 NCAIR mutase (PurE)-related proteins [General function prediction only]
Probab=25.29 E-value=2.5e+02 Score=23.56 Aligned_cols=79 Identities=19% Similarity=0.342 Sum_probs=48.2
Q ss_pred CceE-EEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeE--EEEecCCCCCCCCCCEEEeccCC--hhhhhCCCCeeEEEec
Q psy16503 15 NGVI-YFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRV--IWKWEGENMSGKIDKILLKSWAP--QRDILDHPNVKVFISH 89 (244)
Q Consensus 15 ~~vI-~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~v--iw~~~~~~~~~~~~nv~~~~~~p--q~~lL~h~~~~l~Ith 89 (244)
.++| ++|-||.- +| ..++.....+.++..+ +|-.+-.-+ ..-++ +.... ..+++.|--
T Consensus 117 ~g~vgvlsAGTSD----lP--vAeEa~~tae~lG~ev~~~~DvGVAGi---------HRLl~~l~r~~~--~~~~~lIVv 179 (254)
T COG1691 117 GGKVGVLSAGTSD----LP--VAEEAAVTAEELGVEVQKVYDVGVAGI---------HRLLSALKRLKI--EDADVLIVV 179 (254)
T ss_pred CceEEEEecCCCC----cc--hHHHHHHHHHHhCceEEEEEeeccchH---------HhhhhHHHHHHh--hCCCeEEEE
Confidence 4566 88888883 44 3455555666666644 454442111 11123 33333 678888888
Q ss_pred CChhhHHHHHHh---CCcEEecCC
Q psy16503 90 GGFLGTTEALYS---GVPIIGIPM 110 (244)
Q Consensus 90 gG~~s~~Eal~~---gvP~i~vP~ 110 (244)
+|+-...-++-+ .+|+|++|.
T Consensus 180 AGMEGaLPsvvagLvD~PVIavPT 203 (254)
T COG1691 180 AGMEGALPSVVAGLVDVPVIAVPT 203 (254)
T ss_pred cccccchHHHHHhccCCCeEeccc
Confidence 888766666655 489999997
No 319
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=25.25 E-value=2.1e+02 Score=25.39 Aligned_cols=44 Identities=23% Similarity=0.375 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhCChhHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Q psy16503 138 ETVLVALRTVLGNPSYKKRAEKVARLFQDRPMPPLDTAIYWIEHV 182 (244)
Q Consensus 138 ~~l~~ai~~ll~~~~y~~~a~~~s~~~~~~~~~~~~~a~~~ie~~ 182 (244)
++|.++..+..+|++|++....+-+.+..|| +|+..+....++.
T Consensus 26 ~eLe~ay~~~~~D~~F~~el~~~l~~Y~GRp-tpLy~a~~Lt~~~ 69 (396)
T COG0133 26 EELEKAYEKAKNDPEFQAELDYLLKDYAGRP-TPLYFAERLTEHL 69 (396)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-ChhHHHHHHHHhh
Confidence 6778888888889999999999999999887 5666666555543
No 320
>PF11071 DUF2872: Protein of unknown function (DUF2872); InterPro: IPR019884 This entry represents a family of uncharacterised proteins, including YtoQ from Bacillus subtilis. This family shows some sequence similarity to a family of nucleoside 2-deoxyribosyltransferases (COG3613 as iterated through CDD), but sufficiently remote that PSI-BLAST starting from YtoQ and exploring outwards does not discover the relationship.
Probab=25.18 E-value=2e+02 Score=21.87 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=17.6
Q ss_pred CCeeEEEecCC-----hhhHHHH---HHhCCcEEec
Q psy16503 81 PNVKVFISHGG-----FLGTTEA---LYSGVPIIGI 108 (244)
Q Consensus 81 ~~~~l~IthgG-----~~s~~Ea---l~~gvP~i~v 108 (244)
.++|++|-+=| +|+-..| ++.|+|+|++
T Consensus 71 ~~aDvVVvrFGekYKQWNaAfDAg~a~AlgKplI~l 106 (141)
T PF11071_consen 71 EKADVVVVRFGEKYKQWNAAFDAGYAAALGKPLITL 106 (141)
T ss_pred hhCCEEEEEechHHHHHHHHhhHHHHHHcCCCeEEe
Confidence 67777777655 4555543 4567777766
No 321
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=25.17 E-value=1.7e+02 Score=22.04 Aligned_cols=87 Identities=21% Similarity=0.180 Sum_probs=42.7
Q ss_pred HHHHHHHHhcCCCeEEEEecCCCCCCCCCCEEEeccCC-hhhhhCCCCeeEEEecCCh---hhHHHHHHhCCcEEecCCC
Q psy16503 36 RKAFLRAFEQIPQRVIWKWEGENMSGKIDKILLKSWAP-QRDILDHPNVKVFISHGGF---LGTTEALYSGVPIIGIPMF 111 (244)
Q Consensus 36 ~~~i~~al~~~~~~viw~~~~~~~~~~~~nv~~~~~~p-q~~lL~h~~~~l~IthgG~---~s~~Eal~~gvP~i~vP~~ 111 (244)
.+.+.+....++.++.|.-+..+....++++...++-. ..++-..+.+-+++||++. -.+.+++.. |.-.+-+.
T Consensus 10 a~al~~la~~lg~~v~v~d~r~e~~~~~~~~~~~~~~~~~~~~~~~~~t~Vv~th~h~~D~~~L~~~l~~--~~~YiG~l 87 (136)
T PF13478_consen 10 ARALARLAALLGFRVTVVDPRPERFPEADEVICIPPDDILEDLEIDPNTAVVMTHDHELDAEALEAALAS--PARYIGLL 87 (136)
T ss_dssp HHHHHHHHHHCTEEEEEEES-CCC-TTSSEEECSHHHHHHHHC-S-TT-EEE--S-CCCHHHHHHHHTTS--S-SEEEES
T ss_pred HHHHHHHHHhCCCEEEEEcCCccccCCCCccEecChHHHHhccCCCCCeEEEEcCCchhHHHHHHHHHcC--CCCEEEee
Confidence 45667777778988888766544333445544433311 1122334666678898874 233333334 44444447
Q ss_pred cchhhHHHHHHHc
Q psy16503 112 GDQKANIRVVEKA 124 (244)
Q Consensus 112 ~dQ~~na~~~~~~ 124 (244)
+.+...+.+.++.
T Consensus 88 GS~~k~~~~~~~L 100 (136)
T PF13478_consen 88 GSRRKAARRLERL 100 (136)
T ss_dssp S-HHHHHHHCCCH
T ss_pred cCchHHHHHHHHh
Confidence 7777777766553
No 322
>PLN00019 photosystem I reaction center subunit III; Provisional
Probab=25.09 E-value=2.9e+02 Score=22.76 Aligned_cols=57 Identities=18% Similarity=0.110 Sum_probs=31.7
Q ss_pred hHHHHHHHHHH--HHHcCCCCCCCcccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy16503 171 PLDTAIYWIEH--VIRHGGGAHLRPASLELYWWQYILLDVIIALILLIAAMVWSIQWLVRYALIT 233 (244)
Q Consensus 171 ~~~~a~~~ie~--~~~~~~~~~l~~~~~~~~~~~~~~lDv~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (244)
...+...+-+. +.-.+|.|||-..++. .|.-|++..-+.++.+.-|+- |+.|.-++.
T Consensus 113 tk~RFe~Y~~agLLCG~DGLPHLIvdG~~-----~HaGeF~IPgllFLYIAGwIG-W~GRsYL~a 171 (223)
T PLN00019 113 TKRRFDNYGKAGLLCGADGLPHLIVDGDQ-----AHLGEFITPGLGFLYIAGWIG-WVGRSYLIA 171 (223)
T ss_pred HHHHHHHhhhhccccCCCCCceeecCCCc-----cccchhhhhhHHHHHHhhhhh-hhhHHHHHH
Confidence 34444444444 4455789999766532 255677666655556655554 355543333
No 323
>PHA02657 hypothetical protein; Provisional
Probab=25.05 E-value=1.4e+02 Score=20.81 Aligned_cols=24 Identities=17% Similarity=0.535 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy16503 206 LDVIIALILLIAAMVWSIQWLVRY 229 (244)
Q Consensus 206 lDv~~~~~~~~~~~~~~~~~~~~~ 229 (244)
+=|+.++++++.++.+.+.+++++
T Consensus 27 imVitvfv~vI~il~flLLYLvkW 50 (95)
T PHA02657 27 ILVFTIFIFVVCILIYLLIYLVDW 50 (95)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555545543
No 324
>PRK14116 gpmA phosphoglyceromutase; Provisional
Probab=25.03 E-value=48 Score=27.33 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=19.8
Q ss_pred CeeEEEecCChhhHHHHHHhCCcE
Q psy16503 82 NVKVFISHGGFLGTTEALYSGVPI 105 (244)
Q Consensus 82 ~~~l~IthgG~~s~~Eal~~gvP~ 105 (244)
..-++|||||...+.-+...|.|.
T Consensus 175 ~~vlvVsHg~vir~ll~~~~~~~~ 198 (228)
T PRK14116 175 KNVIIAAHGNSLRALTKYIENISD 198 (228)
T ss_pred CeEEEEcChHHHHHHHHHHhCCCH
Confidence 556899999998888888888773
No 325
>PRK13463 phosphatase PhoE; Provisional
Probab=24.95 E-value=53 Score=26.41 Aligned_cols=25 Identities=16% Similarity=0.256 Sum_probs=20.1
Q ss_pred CeeEEEecCChhhHHHHHHhCCcEE
Q psy16503 82 NVKVFISHGGFLGTTEALYSGVPII 106 (244)
Q Consensus 82 ~~~l~IthgG~~s~~Eal~~gvP~i 106 (244)
+.-++|+|||.....-+.+.|.|.-
T Consensus 144 ~~vlvVsHg~~ir~~~~~~~~~~~~ 168 (203)
T PRK13463 144 ESILIVSHAAAAKLLVGHFAGIEIE 168 (203)
T ss_pred CEEEEEeChHHHHHHHHHHhCCCHH
Confidence 4568999999988888888887753
No 326
>PF14350 Beta_protein: Beta protein
Probab=24.95 E-value=74 Score=27.99 Aligned_cols=46 Identities=20% Similarity=0.435 Sum_probs=28.4
Q ss_pred cEEecCCCcchhhHHHHHH---HcCceeecCCCCCCHHHHHHHHHHHhC
Q psy16503 104 PIIGIPMFGDQKANIRVVE---KAGFGVTLPYDQITEETVLVALRTVLG 149 (244)
Q Consensus 104 P~i~vP~~~dQ~~na~~~~---~~G~g~~l~~~~~~~~~l~~ai~~ll~ 149 (244)
|++.+--..+.......+. ..|+++.+..+++..+.+...|++++.
T Consensus 99 PVi~l~~~~~~~~~v~~~~~~~~~~iaiRl~~~~~~~~~~~~~i~~i~~ 147 (347)
T PF14350_consen 99 PVIGLDRSDDYLRAVRSIARRNGGGIAIRLRPDDLDDDDFPSEISRILA 147 (347)
T ss_pred EEEecCCcHHHHHHHHHHHHhcCCeEEEEeecccccchhHHHHHHHHHH
Confidence 6666654444444444444 457777887777766666676766663
No 327
>PRK11914 diacylglycerol kinase; Reviewed
Probab=24.83 E-value=73 Score=27.41 Aligned_cols=30 Identities=23% Similarity=0.301 Sum_probs=25.5
Q ss_pred CCeeEEEecCChhhHHHHHH----hCCcEEecCC
Q psy16503 81 PNVKVFISHGGFLGTTEALY----SGVPIIGIPM 110 (244)
Q Consensus 81 ~~~~l~IthgG~~s~~Eal~----~gvP~i~vP~ 110 (244)
...+++|.-||=||+.|++. .++|+-++|.
T Consensus 63 ~~~d~vvv~GGDGTi~evv~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 63 KGTDALVVVGGDGVISNALQVLAGTDIPLGIIPA 96 (306)
T ss_pred cCCCEEEEECCchHHHHHhHHhccCCCcEEEEeC
Confidence 56789999999999999974 4789899996
No 328
>cd07062 Peptidase_S66_mccF_like Microcin C7 self-immunity protein determines resistance to exogenous microcin C7. Microcin C7 self-immunity protein (mccF): MccF, a homolog of the LD-carboxypeptidase family, mediates resistance against exogenously added microcin C7 (MccC7), a ribosomally-encoded peptide antibiotic that contains a phosphoramidate linkage to adenosine monophosphate at its C-terminus. The plasmid-encoded mccF gene is transcribed in the opposite direction to the other five genes (mccA-E) and is required for the full expression of immunity but not for production. The catalytic triad residues (Ser, His, Glu) of LD-carboxypeptidase are also conserved in MccF, strongly suggesting that MccF shares the hydrolytic activity with LD-carboxypeptidases. Substrates of MccF have not been deduced, but could likely be microcin C7 precursors. The possible role of MccF is to defend producer cells against exogenous microcin from re-entering after having been exported. It is suggested that M
Probab=24.69 E-value=1.8e+02 Score=25.26 Aligned_cols=71 Identities=21% Similarity=0.259 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecCCCCCCCCCCEEEeccCChhhhhCCCCeeEEEecCChhhHHHHHH--hCCcEEecCC
Q psy16503 33 SDKRKAFLRAFEQIPQRVIWKWEGENMSGKIDKILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALY--SGVPIIGIPM 110 (244)
Q Consensus 33 ~~~~~~i~~al~~~~~~viw~~~~~~~~~~~~nv~~~~~~pq~~lL~h~~~~l~IthgG~~s~~Eal~--~gvP~i~vP~ 110 (244)
++..+.+.+++..-....||...+. ..-.++.++++...+-.|| |.||-.....+++-+++ +|.+.+-=|.
T Consensus 52 ~~Ra~dL~~a~~Dp~i~aI~~~rGG-----~g~~rlL~~lD~~~i~~~P--K~fiGySDiTaL~~al~~~~g~~t~hGp~ 124 (308)
T cd07062 52 EERAEELMAAFADPSIKAIIPTIGG-----DDSNELLPYLDYELIKKNP--KIFIGYSDITALHLAIYKKTGLVTYYGPN 124 (308)
T ss_pred HHHHHHHHHHhcCCCCCEEEECCcc-----cCHhhhhhhcCHHHHhhCC--CEEEeccHHHHHHHHHHHhcCCeEEECcc
Confidence 4444555555544333444443321 1112334444444444333 46666666666666664 2455444454
No 329
>PRK13054 lipid kinase; Reviewed
Probab=24.43 E-value=85 Score=26.97 Aligned_cols=30 Identities=20% Similarity=0.172 Sum_probs=24.8
Q ss_pred CCeeEEEecCChhhHHHHHHh------C--CcEEecCC
Q psy16503 81 PNVKVFISHGGFLGTTEALYS------G--VPIIGIPM 110 (244)
Q Consensus 81 ~~~~l~IthgG~~s~~Eal~~------g--vP~i~vP~ 110 (244)
.+.+.+|..||=||+.|++.. + +|+-++|.
T Consensus 55 ~~~d~vvv~GGDGTl~evv~~l~~~~~~~~~~lgiiP~ 92 (300)
T PRK13054 55 LGVATVIAGGGDGTINEVATALAQLEGDARPALGILPL 92 (300)
T ss_pred cCCCEEEEECCccHHHHHHHHHHhhccCCCCcEEEEeC
Confidence 567899999999999999755 3 47888896
No 330
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=24.42 E-value=2.9e+02 Score=24.59 Aligned_cols=78 Identities=5% Similarity=0.010 Sum_probs=36.4
Q ss_pred HHHHHHhcCCCceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCCCCCCCCCEEEeccCChhhhhCCCCee
Q psy16503 5 DIKKFLDESVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGKIDKILLKSWAPQRDILDHPNVK 84 (244)
Q Consensus 5 ~l~~~l~~~~~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~~~~~~~nv~~~~~~pq~~lL~h~~~~ 84 (244)
++.+.+....+++++|+-++... .....+.+.+.|++.+..+.+. ++ ....|. ...-..-.+.+...++|
T Consensus 16 ~l~~~~~~~g~r~livt~~~~~~----~~g~~~~v~~~L~~~~~~~~~~-~~--v~~~p~---~~~v~~~~~~~~~~~~D 85 (380)
T cd08185 16 ELGEEALKPGKKALIVTGNGSSK----KTGYLDRVIELLKQAGVEVVVF-DK--VEPNPT---TTTVMEGAALAREEGCD 85 (380)
T ss_pred HHHHHHHhcCCeEEEEeCCCchh----hccHHHHHHHHHHHcCCeEEEe-CC--ccCCCC---HHHHHHHHHHHHHcCCC
Confidence 34444544334666666544421 1245666777777665544332 21 111111 00000111233335789
Q ss_pred EEEecCCh
Q psy16503 85 VFISHGGF 92 (244)
Q Consensus 85 l~IthgG~ 92 (244)
.+|.=||.
T Consensus 86 ~IiavGGG 93 (380)
T cd08185 86 FVVGLGGG 93 (380)
T ss_pred EEEEeCCc
Confidence 99988884
No 331
>PF12669 P12: Virus attachment protein p12 family
Probab=24.40 E-value=96 Score=19.81 Aligned_cols=8 Identities=13% Similarity=-0.130 Sum_probs=3.6
Q ss_pred HHHHHhhc
Q psy16503 228 RYALITYY 235 (244)
Q Consensus 228 ~~~~~~~~ 235 (244)
+++++..+
T Consensus 18 r~~~k~~K 25 (58)
T PF12669_consen 18 RKFIKDKK 25 (58)
T ss_pred HHHHHHhh
Confidence 44444433
No 332
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III. These are multidomain proteins, in which MGS is the C-terminal domain.
Probab=24.39 E-value=1.8e+02 Score=20.85 Aligned_cols=85 Identities=15% Similarity=0.158 Sum_probs=44.3
Q ss_pred eEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCC-CCCCCCCEEEeccC--------C-hhhhhCCCCeeEE
Q psy16503 17 VIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGEN-MSGKIDKILLKSWA--------P-QRDILDHPNVKVF 86 (244)
Q Consensus 17 vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~-~~~~~~nv~~~~~~--------p-q~~lL~h~~~~l~ 86 (244)
-|++|.+... .+.+..+++.|...++.++-.-+..+ +.+..-++....++ | -.+++.+..++++
T Consensus 2 ~vlisv~~~d------k~~~~~~a~~l~~~G~~i~aT~gTa~~L~~~gi~~~~v~~~~~~~~~~~~~i~~~i~~~~idlV 75 (116)
T cd01423 2 GILISIGSYS------KPELLPTAQKLSKLGYKLYATEGTADFLLENGIPVTPVAWPSEEPQNDKPSLRELLAEGKIDLV 75 (116)
T ss_pred cEEEecCccc------chhHHHHHHHHHHCCCEEEEccHHHHHHHHcCCCceEeeeccCCCCCCchhHHHHHHcCCceEE
Confidence 3677776652 34466778888888888654322111 11111112221111 2 2355556788888
Q ss_pred EecC--Ch--------hhHHHHHHhCCcEEe
Q psy16503 87 ISHG--GF--------LGTTEALYSGVPIIG 107 (244)
Q Consensus 87 Ithg--G~--------~s~~Eal~~gvP~i~ 107 (244)
|+-. |. .-=..|+.+|+|++.
T Consensus 76 In~~~~~~~~~~~~~~~iRr~Av~~~ip~iT 106 (116)
T cd01423 76 INLPSNRGKRVLDNDYVMRRAADDFAVPLIT 106 (116)
T ss_pred EECCCCCCCccccCcEeeehhhHhhCCcccc
Confidence 8722 22 122347888888864
No 333
>PRK15482 transcriptional regulator MurR; Provisional
Probab=24.28 E-value=2.1e+02 Score=24.19 Aligned_cols=28 Identities=29% Similarity=0.350 Sum_probs=17.9
Q ss_pred CeeEEEecCChh-----hHHHHHHhCCcEEecC
Q psy16503 82 NVKVFISHGGFL-----GTTEALYSGVPIIGIP 109 (244)
Q Consensus 82 ~~~l~IthgG~~-----s~~Eal~~gvP~i~vP 109 (244)
.+-++|++.|.+ .+..|-..|.|+|++-
T Consensus 184 Dv~i~iS~sg~t~~~~~~~~~a~~~g~~iI~IT 216 (285)
T PRK15482 184 DVQIAISYSGSKKEIVLCAEAARKQGATVIAIT 216 (285)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 455788888853 2333445788888873
No 334
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=24.22 E-value=4.2e+02 Score=22.19 Aligned_cols=80 Identities=18% Similarity=0.172 Sum_probs=42.0
Q ss_pred HhcCCCceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCCCCCCCCCEEEeccCChhhhhCCCCeeEEEec
Q psy16503 10 LDESVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGKIDKILLKSWAPQRDILDHPNVKVFISH 89 (244)
Q Consensus 10 l~~~~~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~~~~~~~nv~~~~~~pq~~lL~h~~~~l~Ith 89 (244)
+.+++ .+.++..|+.. ...+.+..-|.+.+..+... ++... ...+...+....+-++|++
T Consensus 125 i~~a~-~I~i~G~G~s~-------~~A~~~~~~l~~~g~~~~~~-~d~~~-----------~~~~~~~~~~~Dv~I~iS~ 184 (278)
T PRK11557 125 LRSAR-RIILTGIGASG-------LVAQNFAWKLMKIGINAVAE-RDMHA-----------LLATVQALSPDDLLLAISY 184 (278)
T ss_pred HhcCC-eEEEEecChhH-------HHHHHHHHHHhhCCCeEEEc-CChHH-----------HHHHHHhCCCCCEEEEEcC
Confidence 34443 56777777652 33444555555555544431 11000 0011122333445578888
Q ss_pred CChhh-----HHHHHHhCCcEEecC
Q psy16503 90 GGFLG-----TTEALYSGVPIIGIP 109 (244)
Q Consensus 90 gG~~s-----~~Eal~~gvP~i~vP 109 (244)
.|.+. +..|-..|.|+|++-
T Consensus 185 sg~~~~~~~~~~~ak~~ga~iI~IT 209 (278)
T PRK11557 185 SGERRELNLAADEALRVGAKVLAIT 209 (278)
T ss_pred CCCCHHHHHHHHHHHHcCCCEEEEc
Confidence 88543 555667899999883
No 335
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=24.21 E-value=3.6e+02 Score=23.87 Aligned_cols=92 Identities=15% Similarity=0.269 Sum_probs=47.9
Q ss_pred HHHHHHhcCCCceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEE-ecCCCCCCCCCCEEEeccCChhhhhCCCCe
Q psy16503 5 DIKKFLDESVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWK-WEGENMSGKIDKILLKSWAPQRDILDHPNV 83 (244)
Q Consensus 5 ~l~~~l~~~~~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~-~~~~~~~~~~~nv~~~~~~pq~~lL~h~~~ 83 (244)
++.+.+....+++++|+-++.. ....+.+.+.++..+..+++. +.+ .|+.-.+.. -.+.+...++
T Consensus 20 ~l~~~l~~~g~~~livtd~~~~------~~~~~~v~~~l~~~~~~~~~~~~~~-----ep~~~~v~~---~~~~~~~~~~ 85 (366)
T PRK09423 20 RLGEYLKPLGKRALVIADEFVL------GIVGDRVEASLKEAGLTVVFEVFNG-----ECSDNEIDR---LVAIAEENGC 85 (366)
T ss_pred HHHHHHHHcCCEEEEEEChhHH------HHHHHHHHHHHHhCCCeEEEEEeCC-----CCCHHHHHH---HHHHHHhcCC
Confidence 3445555433456666633331 235667777777655443321 221 121101111 1123333578
Q ss_pred eEEEecCChhhHHHH-----HHhCCcEEecCCC
Q psy16503 84 KVFISHGGFLGTTEA-----LYSGVPIIGIPMF 111 (244)
Q Consensus 84 ~l~IthgG~~s~~Ea-----l~~gvP~i~vP~~ 111 (244)
|++|.=||. |+..+ ...|+|++.+|-.
T Consensus 86 d~IIavGGG-sv~D~aK~iA~~~~~p~i~IPTt 117 (366)
T PRK09423 86 DVVIGIGGG-KTLDTAKAVADYLGVPVVIVPTI 117 (366)
T ss_pred CEEEEecCh-HHHHHHHHHHHHcCCCEEEeCCc
Confidence 999999885 34332 3458999999974
No 336
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=24.16 E-value=4.5e+02 Score=22.37 Aligned_cols=87 Identities=15% Similarity=0.129 Sum_probs=48.7
Q ss_pred EEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCCC--CCCC---CCEEEeccCC-------------------
Q psy16503 18 IYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENM--SGKI---DKILLKSWAP------------------- 73 (244)
Q Consensus 18 I~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~~--~~~~---~nv~~~~~~p------------------- 73 (244)
|+++.|.... .......++++|.+.+..+.+.+..... ...+ -.+...+...
T Consensus 2 ~~~~~~~~gG----~~~~~~~la~~l~~~G~ev~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (350)
T cd03785 2 ILIAGGGTGG----HIFPALALAEELRERGAEVLFLGTKRGLEARLVPKAGIPLHTIPVGGLRRKGSLKKLKAPFKLLKG 77 (350)
T ss_pred EEEEecCchh----hhhHHHHHHHHHHhCCCEEEEEECCCcchhhcccccCCceEEEEecCcCCCChHHHHHHHHHHHHH
Confidence 6677766632 3445667889998888877665543211 1111 1222222210
Q ss_pred ---hhhhhCCCCeeEEEecCChhh---HHHHHHhCCcEEec
Q psy16503 74 ---QRDILDHPNVKVFISHGGFLG---TTEALYSGVPIIGI 108 (244)
Q Consensus 74 ---q~~lL~h~~~~l~IthgG~~s---~~Eal~~gvP~i~v 108 (244)
...++...+-|++++|++..+ ..-+...|+|++..
T Consensus 78 ~~~~~~~i~~~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~ 118 (350)
T cd03785 78 VLQARKILKKFKPDVVVGFGGYVSGPVGLAAKLLGIPLVIH 118 (350)
T ss_pred HHHHHHHHHhcCCCEEEECCCCcchHHHHHHHHhCCCEEEE
Confidence 113344346899999986543 33455679999874
No 337
>PF14851 FAM176: FAM176 family
Probab=23.98 E-value=1e+02 Score=24.03 Aligned_cols=23 Identities=4% Similarity=-0.045 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16503 209 IIALILLIAAMVWSIQWLVRYAL 231 (244)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~ 231 (244)
|++..+|+.+++.++..+++..|
T Consensus 25 YFv~gVC~GLlLtLcllV~risc 47 (153)
T PF14851_consen 25 YFVSGVCAGLLLTLCLLVIRISC 47 (153)
T ss_pred HHHHHHHHHHHHHHHHHHhhhee
Confidence 34444444444444444566666
No 338
>PRK14119 gpmA phosphoglyceromutase; Provisional
Probab=23.96 E-value=56 Score=26.88 Aligned_cols=24 Identities=13% Similarity=0.123 Sum_probs=19.5
Q ss_pred CeeEEEecCChhhHHHHHHhCCcE
Q psy16503 82 NVKVFISHGGFLGTTEALYSGVPI 105 (244)
Q Consensus 82 ~~~l~IthgG~~s~~Eal~~gvP~ 105 (244)
+.-++|||||...+.=+...|.|.
T Consensus 175 ~~vlvVsHg~vir~l~~~~~~~~~ 198 (228)
T PRK14119 175 QTVLVSAHGNSIRALIKYLEDVSD 198 (228)
T ss_pred CeEEEEeChHHHHHHHHHHhCCCH
Confidence 456899999998888888888773
No 339
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=23.86 E-value=2e+02 Score=21.11 Aligned_cols=45 Identities=20% Similarity=0.367 Sum_probs=27.9
Q ss_pred CCchHHHHHHhcCCCceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEE
Q psy16503 1 MNETDIKKFLDESVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVI 51 (244)
Q Consensus 1 ~~p~~l~~~l~~~~~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~vi 51 (244)
+++++++..++... .+|++..|.... ...+.+..+ .+++.+..+.
T Consensus 46 l~~~~l~~ll~~~p-eivliGTG~~~~-~~~~~~~~~----~l~~~Gi~ve 90 (117)
T cd05126 46 LQPEELEELLEEGV-EVIVIGTGQSGA-LKVPPETVE----KLEKRGVEVL 90 (117)
T ss_pred CCHHHHHHHHhcCC-CEEEEcCCCCcc-ccCCHHHHH----HHHhcCCEEE
Confidence 46788888887754 488888888743 123555443 5555555444
No 340
>KOG2678|consensus
Probab=23.83 E-value=4.3e+02 Score=22.03 Aligned_cols=16 Identities=19% Similarity=0.185 Sum_probs=8.8
Q ss_pred hhHHHHHHHHHHHHhC
Q psy16503 151 PSYKKRAEKVARLFQD 166 (244)
Q Consensus 151 ~~y~~~a~~~s~~~~~ 166 (244)
.+++.+|......+..
T Consensus 165 rslKtnalAfqsalke 180 (244)
T KOG2678|consen 165 RSLKTNALAFQSALKE 180 (244)
T ss_pred HHHHHhHHHHHHHHHh
Confidence 4455666555555544
No 341
>COG1759 5-formaminoimidazole-4-carboxamide-1-beta-D-ribofuranosyl 5'-monophosphate synthetase (purine biosynthesis) [Nucleotide transport and metabolism]
Probab=23.69 E-value=3.2e+02 Score=24.26 Aligned_cols=116 Identities=21% Similarity=0.322 Sum_probs=62.6
Q ss_pred CchHHHHHHhcCC-CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCC-C-----CCCCCCCEEEeccCC-
Q psy16503 2 NETDIKKFLDESV-NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGE-N-----MSGKIDKILLKSWAP- 73 (244)
Q Consensus 2 ~p~~l~~~l~~~~-~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~-~-----~~~~~~nv~~~~~~p- 73 (244)
+.+++.+++++.+ ..+-.-++||+.. -.+++..+.-+.+-+..+... + .+...+.+.+.+|-+
T Consensus 3 ~r~~ileil~~Y~~~~i~Iat~gSHSa---------L~Il~GAK~EGF~Ti~v~~~gr~~~Y~~f~~a~e~i~v~~f~di 73 (361)
T COG1759 3 NRKEILEILENYDLEDITIATIGSHSA---------LQILDGAKEEGFRTIAVCQRGREKPYEKFPVADEVIIVDKFSDI 73 (361)
T ss_pred cHHHHHHHHHhccccceEEEEeecchH---------HHHhhhHHhcCCcEEEEEecCccchHHhhchhheEEEechhHHH
Confidence 5678999999885 4677788899842 235666666666544444431 1 111114555556532
Q ss_pred -----hhhhhCCCCeeEEEecCChhhH--HHH--HHhCCcEEecCC---C-cchhhHHHHHHHcCcee
Q psy16503 74 -----QRDILDHPNVKVFISHGGFLGT--TEA--LYSGVPIIGIPM---F-GDQKANIRVVEKAGFGV 128 (244)
Q Consensus 74 -----q~~lL~h~~~~l~IthgG~~s~--~Ea--l~~gvP~i~vP~---~-~dQ~~na~~~~~~G~g~ 128 (244)
|..++ ..-.+||-||..... ++. -.+-||+.+-=. | .||..--..+++.|+-+
T Consensus 74 l~~~iqe~L~--~~n~I~IP~gSfv~Y~G~d~ie~~~~vP~fGnR~lLrwE~~~~~~~~lLekAgi~~ 139 (361)
T COG1759 74 LNEEIQEELR--ELNAIFIPHGSFVAYVGYDGIENEFEVPMFGNRELLRWEEDRKLEYKLLEKAGLRI 139 (361)
T ss_pred hhHHHHHHHH--HcCeEEecCCceEEEecchhhhhcccCcccccHhHhhhhcchhhHHHHHHHcCCCC
Confidence 33455 445678888764211 011 113345444321 1 36666666677666543
No 342
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=23.68 E-value=55 Score=25.36 Aligned_cols=24 Identities=25% Similarity=0.563 Sum_probs=19.1
Q ss_pred CeeEEEecCChhhHHHHHHhCCcE
Q psy16503 82 NVKVFISHGGFLGTTEALYSGVPI 105 (244)
Q Consensus 82 ~~~l~IthgG~~s~~Eal~~gvP~ 105 (244)
+.-++|+|||.....-+...|.|.
T Consensus 138 ~~vlvVsHg~~i~~l~~~~~~~~~ 161 (177)
T TIGR03162 138 DNVLIVTHGGVIRALLAHLLGLPL 161 (177)
T ss_pred CeEEEEECHHHHHHHHHHHhCCCH
Confidence 456899999998888787778763
No 343
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=23.50 E-value=3e+02 Score=24.46 Aligned_cols=95 Identities=13% Similarity=0.153 Sum_probs=46.3
Q ss_pred HHHHHHhcCC-CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCCCCCCCCCEEEeccCChhhhhCCCCe
Q psy16503 5 DIKKFLDESV-NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGKIDKILLKSWAPQRDILDHPNV 83 (244)
Q Consensus 5 ~l~~~l~~~~-~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~~~~~~~nv~~~~~~pq~~lL~h~~~ 83 (244)
++.+.+.... +++++|+ |.... .....+.+.+.|++.+..+.+ +++ ....|+ +.... .-.+.+...++
T Consensus 16 ~l~~~l~~~~~~~~livt-~~~~~----~~~~~~~v~~~L~~~~~~~~~-~~~--v~~~p~-~~~v~--~~~~~~~~~~~ 84 (376)
T cd08193 16 RLGELLAALGAKRVLVVT-DPGIL----KAGLIDPLLASLEAAGIEVTV-FDD--VEADPP-EAVVE--AAVEAARAAGA 84 (376)
T ss_pred HHHHHHHHcCCCeEEEEc-Ccchh----hCccHHHHHHHHHHcCCeEEE-ECC--CCCCcC-HHHHH--HHHHHHHhcCC
Confidence 4555666533 4445444 44422 123455666777665554433 222 111111 00000 11122333578
Q ss_pred eEEEecCChhhHHHHH---H--------------------hCCcEEecCCC
Q psy16503 84 KVFISHGGFLGTTEAL---Y--------------------SGVPIIGIPMF 111 (244)
Q Consensus 84 ~l~IthgG~~s~~Eal---~--------------------~gvP~i~vP~~ 111 (244)
|.+|.=||. |+..+. + .++|++.+|-.
T Consensus 85 D~IIaiGGG-s~iD~aK~ia~~~~~~~~~~~~~~~~~~~~~~~p~i~IPTT 134 (376)
T cd08193 85 DGVIGFGGG-SSMDVAKLVAVLAGSDQPLADMYGVDLVAGPRLPLILVPTT 134 (376)
T ss_pred CEEEEeCCc-hHHHHHHHHHHHHHCCCCHHHHhCCCccCCCCCCEEEeCCC
Confidence 999998885 333321 1 27899999975
No 344
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=23.50 E-value=2.3e+02 Score=21.89 Aligned_cols=6 Identities=17% Similarity=0.152 Sum_probs=2.3
Q ss_pred HHHHHH
Q psy16503 227 VRYALI 232 (244)
Q Consensus 227 ~~~~~~ 232 (244)
..++|.
T Consensus 48 li~lcs 53 (189)
T PF05568_consen 48 LIYLCS 53 (189)
T ss_pred HHHHHh
Confidence 333443
No 345
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=23.42 E-value=1.1e+02 Score=19.06 Aligned_cols=23 Identities=9% Similarity=0.086 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy16503 200 WWQYILLDVIIALILLIAAMVWS 222 (244)
Q Consensus 200 ~~~~~~lDv~~~~~~~~~~~~~~ 222 (244)
+|.|..|-+-.+++.++++++-+
T Consensus 8 ~YDy~tLrigGLi~A~vlfi~Gi 30 (50)
T PF02038_consen 8 YYDYETLRIGGLIFAGVLFILGI 30 (50)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHhhccchHHHHHHHHHHH
Confidence 45667777776665555544433
No 346
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=23.26 E-value=4.2e+02 Score=21.68 Aligned_cols=28 Identities=29% Similarity=0.605 Sum_probs=21.0
Q ss_pred CCeeEEEe-cCChhhHHHHHHhCCcEEec
Q psy16503 81 PNVKVFIS-HGGFLGTTEALYSGVPIIGI 108 (244)
Q Consensus 81 ~~~~l~It-hgG~~s~~Eal~~gvP~i~v 108 (244)
|.+-+++. +.....+.||...|+|+|++
T Consensus 115 Pdliiv~dp~~~~~AI~EA~kl~IP~Iai 143 (204)
T PRK04020 115 PDVVVVTDPRGDAQAVKEAIEVGIPVVAL 143 (204)
T ss_pred CCEEEEECCcccHHHHHHHHHhCCCEEEE
Confidence 55533333 34578999999999999997
No 347
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=22.76 E-value=3.3e+02 Score=20.33 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=25.2
Q ss_pred CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEe
Q psy16503 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKW 54 (244)
Q Consensus 15 ~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~ 54 (244)
..+|++++|+.-. ...+.++.+++.+.. +.++++..
T Consensus 51 ~d~vvi~lGtNd~---~~~~nl~~ii~~~~~-~~~ivlv~ 86 (150)
T cd01840 51 RKTVVIGLGTNGP---FTKDQLDELLDALGP-DRQVYLVN 86 (150)
T ss_pred CCeEEEEecCCCC---CCHHHHHHHHHHcCC-CCEEEEEE
Confidence 5799999999954 456777888887742 34666643
No 348
>cd00633 Secretoglobin Secretoglobins are relatively small, secreted, disulphide-bridged dimeric proteins with encoding genes sharing substantial sequence similarity. Their family subunits may be grouped into five subfamilies, A-E. Uteroglobin (subfamily A), which is identical to Clara cell protein (CC10), forms a globular shaped homodimer with a large hydrophobic pocket located between the two dimers. The uteroglobin monomer structure is composed of four alpha helices that do not form a canonical four helix-bundle motif but rather a boomerang-shaped structure in which helices H1, H3, and H4 are able to bind a homodimeric partner. The hydrophobic pocket binds steroids, particularly progesterone, with high specificity. However, the true biological function of uteroglobin is poorly understood. In mammals, uteroglobin has immunosuppressive and anti-inflammatory properties through the inhibition of phospholipase A2. The other four main subfamilies of secretoglobins are found in heterodimeri
Probab=22.65 E-value=2.3e+02 Score=18.36 Aligned_cols=50 Identities=14% Similarity=0.250 Sum_probs=41.1
Q ss_pred CHHHHHHHHHHHhCChhHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHc
Q psy16503 136 TEETVLVALRTVLGNPSYKKRAEKVARLFQDRPMPPLDTAIYWIEHVIRH 185 (244)
Q Consensus 136 ~~~~l~~ai~~ll~~~~y~~~a~~~s~~~~~~~~~~~~~a~~~ie~~~~~ 185 (244)
+.+.+...++.--.++..++++.++.+=+...+......+...++.+...
T Consensus 15 s~~~y~~~L~~f~~~~~~~~A~~~lK~C~d~~~~e~k~~~~~~m~~I~~S 64 (67)
T cd00633 15 SEEEYKAELEKFNATPEAVEAKEKLKQCVDEQSLETKENIAKLLEKILAS 64 (67)
T ss_pred CHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHHHHHHHHHcC
Confidence 67889999999988899999999999999887666666777777777643
No 349
>PF12965 DUF3854: Domain of unknown function (DUF3854); InterPro: IPR024385 This is a family of uncharacterised proteins, found by clustering human gut metagenomic sequences [].
Probab=22.47 E-value=92 Score=23.42 Aligned_cols=33 Identities=33% Similarity=0.653 Sum_probs=26.4
Q ss_pred hhCCCCeeEEEecCChhhHHHHHHhCCcEEecCC
Q psy16503 77 ILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPM 110 (244)
Q Consensus 77 lL~h~~~~l~IthgG~~s~~Eal~~gvP~i~vP~ 110 (244)
++.||+..++||=|..-+ .-++.+|.|.|++|-
T Consensus 5 v~~~p~~pi~ItEG~kKA-~al~s~G~~aIalpG 37 (130)
T PF12965_consen 5 VLDDPNIPIWITEGAKKA-GALLSQGYPAIALPG 37 (130)
T ss_pred eecCCCccEEEEechHHH-HHHHcCCceEEEeCc
Confidence 456789999999998655 345679999999995
No 350
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=22.29 E-value=3.3e+02 Score=22.19 Aligned_cols=51 Identities=16% Similarity=0.113 Sum_probs=32.8
Q ss_pred hCCcEEecCCCcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHHHhCChhH
Q psy16503 101 SGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSY 153 (244)
Q Consensus 101 ~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ll~~~~y 153 (244)
.+.|+|++-...|... .......|+.=.+.+ +.+.++|.++|+.++....|
T Consensus 80 p~~~vvvlt~~~~~~~-~~~~~~~Ga~G~l~K-~~~~~~L~~aI~~v~~G~~~ 130 (216)
T PRK10100 80 NNIKILLLNTPEDYPY-REIENWPHINGVFYA-MEDQERVVNGLQGVLRGECY 130 (216)
T ss_pred CCCcEEEEECCchhHH-HHHHHhcCCeEEEEC-CCCHHHHHHHHHHHHcCCcc
Confidence 4678888876666332 222222476333433 34799999999999987655
No 351
>TIGR03848 MSMEG_4193 probable phosphomutase, MSMEG_4193 family. A three-gene system broadly conserved among the Actinobacteria includes MSMEG_4193 and homologs, a subgroup among the larger phosphoglycerate mutase family protein (pfam00300). Another member of the trio is a probable kinase, related to phosphatidylinositol kinases; that context supports the hypothesis that this protein acts as a phosphomutase.
Probab=22.26 E-value=79 Score=25.28 Aligned_cols=25 Identities=28% Similarity=0.205 Sum_probs=19.2
Q ss_pred CeeEEEecCChhhHHHHHHhCCcEE
Q psy16503 82 NVKVFISHGGFLGTTEALYSGVPII 106 (244)
Q Consensus 82 ~~~l~IthgG~~s~~Eal~~gvP~i 106 (244)
..-++|||||.....=+...|.|.-
T Consensus 145 ~~vliVsHg~~ir~ll~~~lg~~~~ 169 (204)
T TIGR03848 145 AVWVACSHGDVIKSVLADALGMHLD 169 (204)
T ss_pred CEEEEEeCChHHHHHHHHHhCCCHH
Confidence 3458999999987777777787653
No 352
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=22.21 E-value=2.4e+02 Score=21.62 Aligned_cols=21 Identities=14% Similarity=0.055 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHh-hccccccc
Q psy16503 221 WSIQWLVRYALIT-YYNTVDDK 241 (244)
Q Consensus 221 ~~~~~~~~~~~~~-~~~~~~~~ 241 (244)
.++-++..++.++ .+.+.+||
T Consensus 107 ~vtg~v~~~l~r~~~~~~~~~~ 128 (141)
T PRK04125 107 ACTGLFSQFILGKTEKEKEDKK 128 (141)
T ss_pred HHHHHHHHHHHHhhhhccccch
Confidence 3333444554443 33334443
No 353
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=22.16 E-value=2.6e+02 Score=25.34 Aligned_cols=27 Identities=33% Similarity=0.548 Sum_probs=20.8
Q ss_pred CeeEEEecCC------hhhHHHHHHhCCcEEec
Q psy16503 82 NVKVFISHGG------FLGTTEALYSGVPIIGI 108 (244)
Q Consensus 82 ~~~l~IthgG------~~s~~Eal~~gvP~i~v 108 (244)
+..+++++.| .+.+.||.+.++|+|++
T Consensus 63 ~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i 95 (432)
T TIGR00173 63 RPVAVVCTSGTAVANLLPAVIEASYSGVPLIVL 95 (432)
T ss_pred CCEEEEECCcchHhhhhHHHHHhcccCCcEEEE
Confidence 3456666655 45788999999999998
No 354
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=21.85 E-value=4.1e+02 Score=21.08 Aligned_cols=34 Identities=12% Similarity=0.049 Sum_probs=25.1
Q ss_pred HHHHhCCcEEecCCC----cchhhHHHHHHHcCceeec
Q psy16503 97 EALYSGVPIIGIPMF----GDQKANIRVVEKAGFGVTL 130 (244)
Q Consensus 97 Eal~~gvP~i~vP~~----~dQ~~na~~~~~~G~g~~l 130 (244)
.++..++|++++|.. .-+..|...+.+.|.-++-
T Consensus 107 ~~L~~~~pv~i~P~~m~~~~~~~~Nl~~L~~~G~~ii~ 144 (181)
T TIGR00421 107 VCLKERRKLVLVPRETPLNSIHLENMLRLSRMGAIILP 144 (181)
T ss_pred HHHhcCCCEEEEeCCCcCCHHHHHHHHHHHHCCCEEEC
Confidence 357799999999952 2346778888888777653
No 355
>PRK14071 6-phosphofructokinase; Provisional
Probab=21.77 E-value=1e+02 Score=27.61 Aligned_cols=35 Identities=20% Similarity=0.251 Sum_probs=26.8
Q ss_pred hhCCCCeeEEEecCChhhHHHHHH----hCCcEEecCCC
Q psy16503 77 ILDHPNVKVFISHGGFLGTTEALY----SGVPIIGIPMF 111 (244)
Q Consensus 77 lL~h~~~~l~IthgG~~s~~Eal~----~gvP~i~vP~~ 111 (244)
.|..-+++.+|.=||-+|+.-+.. .|+|+|++|-.
T Consensus 102 ~l~~~~Id~Li~IGGdgS~~~a~~L~~~~~i~vIgiPkT 140 (360)
T PRK14071 102 GYHSLGLDALIGIGGDGSLAILRRLAQQGGINLVGIPKT 140 (360)
T ss_pred HHHHcCCCEEEEECChhHHHHHHHHHHhcCCcEEEeccc
Confidence 444458899999999988755433 49999999963
No 356
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=21.77 E-value=4.5e+02 Score=21.54 Aligned_cols=34 Identities=29% Similarity=0.331 Sum_probs=18.9
Q ss_pred ChhhHHHHHHhC-CcEEecCCCcchhhHHHHHHHcCc
Q psy16503 91 GFLGTTEALYSG-VPIIGIPMFGDQKANIRVVEKAGF 126 (244)
Q Consensus 91 G~~s~~Eal~~g-vP~i~vP~~~dQ~~na~~~~~~G~ 126 (244)
|...+.++...+ +|++.+ -+=...|+..+.+.|+
T Consensus 146 G~~~l~~~~~~~~iP~vAI--GGi~~~nv~~v~~~Ga 180 (211)
T COG0352 146 GLEGLREIRELVNIPVVAI--GGINLENVPEVLEAGA 180 (211)
T ss_pred CHHHHHHHHHhCCCCEEEE--cCCCHHHHHHHHHhCC
Confidence 444455555555 565555 3334556666666665
No 357
>PF15013 CCSMST1: CCSMST1 family
Probab=21.64 E-value=68 Score=21.90 Aligned_cols=16 Identities=13% Similarity=0.276 Sum_probs=10.3
Q ss_pred CCcccCCccHHHHHHH
Q psy16503 191 LRPASLELYWWQYILL 206 (244)
Q Consensus 191 l~~~~~~~~~~~~~~l 206 (244)
+.+...+++|||.|.+
T Consensus 21 ~~~~~~~~PWyq~~~i 36 (77)
T PF15013_consen 21 RGGKQQRMPWYQVYPI 36 (77)
T ss_pred cCCCCCCCcceeeehh
Confidence 4444446799997644
No 358
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=21.51 E-value=2.8e+02 Score=19.29 Aligned_cols=17 Identities=18% Similarity=0.266 Sum_probs=10.6
Q ss_pred CCccHHHHHHHHHHHHHH
Q psy16503 196 LELYWWQYILLDVIIALI 213 (244)
Q Consensus 196 ~~~~~~~~~~lDv~~~~~ 213 (244)
++.+|+.-+.+ |++.++
T Consensus 28 rN~sfirdFvL-Vic~~l 44 (84)
T PF06143_consen 28 RNRSFIRDFVL-VICCFL 44 (84)
T ss_pred hChHHHHHHHH-HHHHHH
Confidence 35678887777 554433
No 359
>TIGR03745 conj_TIGR03745 integrating conjugative element membrane protein, PFL_4702 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=21.43 E-value=2.2e+02 Score=20.60 Aligned_cols=44 Identities=30% Similarity=0.101 Sum_probs=26.4
Q ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q psy16503 197 ELYWWQYILLDVIIALILLIAAMVWSIQWLVRYALITYYNTVDDKK 242 (244)
Q Consensus 197 ~~~~~~~~~lDv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (244)
-|..+|-|.-|...++..++.++.++. +....+.+|.|-.+-||
T Consensus 31 ~~~tik~Y~~dg~~llgL~i~a~aFi~--Va~~a~~ty~Ei~~Gk~ 74 (104)
T TIGR03745 31 IMQTIKNYGYDGGILLGLLIAAIAFIG--VAYHALGTYHEIRTGKA 74 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHcchh
Confidence 567788899999877765555543332 33445555555444443
No 360
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=21.10 E-value=3.7e+02 Score=20.23 Aligned_cols=9 Identities=33% Similarity=0.435 Sum_probs=4.2
Q ss_pred CeEEEEecC
Q psy16503 48 QRVIWKWEG 56 (244)
Q Consensus 48 ~~viw~~~~ 56 (244)
.-+++.+|.
T Consensus 66 d~v~i~~G~ 74 (177)
T cd01822 66 DLVILELGG 74 (177)
T ss_pred CEEEEeccC
Confidence 344554544
No 361
>PRK14118 gpmA phosphoglyceromutase; Provisional
Probab=20.96 E-value=66 Score=26.46 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=18.8
Q ss_pred CeeEEEecCChhhHHHHHHhCCcE
Q psy16503 82 NVKVFISHGGFLGTTEALYSGVPI 105 (244)
Q Consensus 82 ~~~l~IthgG~~s~~Eal~~gvP~ 105 (244)
+.-++|||||...+.=+...|.|.
T Consensus 174 ~~vlvVsHggvir~ll~~~l~~~~ 197 (227)
T PRK14118 174 KRVLVAAHGNSLRALAKHIEGISD 197 (227)
T ss_pred CeEEEEeCHHHHHHHHHHHhCCCH
Confidence 456899999988777777778664
No 362
>PRK13055 putative lipid kinase; Reviewed
Probab=20.95 E-value=1.1e+02 Score=26.74 Aligned_cols=30 Identities=20% Similarity=0.232 Sum_probs=24.3
Q ss_pred CCeeEEEecCChhhHHHHHHh------CCcEEecCC
Q psy16503 81 PNVKVFISHGGFLGTTEALYS------GVPIIGIPM 110 (244)
Q Consensus 81 ~~~~l~IthgG~~s~~Eal~~------gvP~i~vP~ 110 (244)
...+++|.-||=||+.|++.. ..|+-++|.
T Consensus 58 ~~~d~vvv~GGDGTl~evvngl~~~~~~~~LgiiP~ 93 (334)
T PRK13055 58 AGFDLIIAAGGDGTINEVVNGIAPLEKRPKMAIIPA 93 (334)
T ss_pred cCCCEEEEECCCCHHHHHHHHHhhcCCCCcEEEECC
Confidence 456899999999999999853 467777896
No 363
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=20.75 E-value=2.4e+02 Score=25.10 Aligned_cols=77 Identities=10% Similarity=0.088 Sum_probs=36.0
Q ss_pred HHHHHHhcCC-CceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCCCCCCCCCEEEeccCChhhhhCCCCe
Q psy16503 5 DIKKFLDESV-NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGKIDKILLKSWAPQRDILDHPNV 83 (244)
Q Consensus 5 ~l~~~l~~~~-~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~~~~~~~nv~~~~~~pq~~lL~h~~~ 83 (244)
++.+.+.... +++++|+-++. . .....+.+.+.|+..+..+.+ +++ ....|. +.... .-.+.+...++
T Consensus 16 ~l~~~l~~~g~~~~lvvt~~~~-~----~~g~~~~v~~~L~~~g~~~~~-~~~--v~~~p~-~~~v~--~~~~~~~~~~~ 84 (374)
T cd08189 16 QLPAAISQLGVKKVLIVTDKGL-V----KLGLLDKVLEALEGAGIEYAV-YDG--VPPDPT-IENVE--AGLALYRENGC 84 (374)
T ss_pred HHHHHHHhcCCCeEEEEeCcch-h----hcccHHHHHHHHHhcCCeEEE-eCC--CCCCcC-HHHHH--HHHHHHHhcCC
Confidence 4555665543 45555554443 2 122455667777666554433 221 111111 00000 11233333678
Q ss_pred eEEEecCCh
Q psy16503 84 KVFISHGGF 92 (244)
Q Consensus 84 ~l~IthgG~ 92 (244)
|++|.=||.
T Consensus 85 d~IIaiGGG 93 (374)
T cd08189 85 DAILAVGGG 93 (374)
T ss_pred CEEEEeCCc
Confidence 999988884
No 364
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=20.73 E-value=3.1e+02 Score=22.44 Aligned_cols=52 Identities=12% Similarity=0.198 Sum_probs=36.1
Q ss_pred CCchHHHHHHhcC------CCceEEEEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecC
Q psy16503 1 MNETDIKKFLDES------VNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEG 56 (244)
Q Consensus 1 ~~p~~l~~~l~~~------~~~vI~vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~ 56 (244)
|+++++-+.+.+. ..|-|-+|.|--. +..+++..+++.++..+.++.+.+.+
T Consensus 19 ~t~eel~~~~~~~~~f~~~sggGVt~SGGEPl----lq~~fl~~l~~~~k~~gi~~~leTnG 76 (213)
T PRK10076 19 ITLDALEREVMKDDIFFRTSGGGVTLSGGEVL----MQAEFATRFLQRLRLWGVSCAIETAG 76 (213)
T ss_pred cCHHHHHHHHHhhhHhhcCCCCEEEEeCchHH----cCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 4667777666543 2356888887763 45788888999998888776666554
No 365
>PLN02291 phospho-2-dehydro-3-deoxyheptonate aldolase
Probab=20.62 E-value=2e+02 Score=26.63 Aligned_cols=51 Identities=20% Similarity=0.260 Sum_probs=35.6
Q ss_pred CCchHHHHHHhcCC-----CceEE-EEcCCCCCCCCCCHHHHHHHHHHHhcCCCeEEEEecC
Q psy16503 1 MNETDIKKFLDESV-----NGVIY-FSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEG 56 (244)
Q Consensus 1 ~~p~~l~~~l~~~~-----~~vI~-vs~Gs~~~~~~~~~~~~~~i~~al~~~~~~viw~~~~ 56 (244)
|+|+++.+.++.-+ .++.+ .=||..- -.+.+-.++++.++.+..|+|.++.
T Consensus 310 ~~pdel~~L~~~LnP~~epGRlTLI~RmGa~k-----V~~~LP~Li~aV~~~G~~VvW~cDP 366 (474)
T PLN02291 310 MDPEELVKLIEILNPQNKPGRLTIIVRMGAEK-----LRVKLPHLIRAVRRAGQIVTWVSDP 366 (474)
T ss_pred CCHHHHHHHHHHhCCCCCCceEEEEeccchHH-----HHHHHHHHHHHHHHcCCceEEeecC
Confidence 56788887776421 33444 4456552 2467888999999999999999985
No 366
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=20.46 E-value=2.8e+02 Score=26.19 Aligned_cols=77 Identities=16% Similarity=0.167 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecCCCC-C-----CCCCCEEEeccCC-h-------hhhhCCCCeeEEEecCC------h
Q psy16503 33 SDKRKAFLRAFEQIPQRVIWKWEGENM-S-----GKIDKILLKSWAP-Q-------RDILDHPNVKVFISHGG------F 92 (244)
Q Consensus 33 ~~~~~~i~~al~~~~~~viw~~~~~~~-~-----~~~~nv~~~~~~p-q-------~~lL~h~~~~l~IthgG------~ 92 (244)
....+.+++.|++.+.+.++-+.+... + ...+++.+..... + ..-....+..++++|.| .
T Consensus 9 ~~~a~~l~~~L~~~GV~~vFgvpG~~~~~l~~~l~~~~~i~~v~~~hE~~A~~aAdgyar~tg~~~v~~vt~GpG~~N~l 88 (568)
T PRK07449 9 TLWAAVILEELTRLGVRHVVIAPGSRSTPLTLAAAEHPRLRLHTHFDERSAGFLALGLAKASKRPVAVIVTSGTAVANLY 88 (568)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCccHHHHHHHHhCCCcEEEeecCcccHHHHHHHHHHhhCCCEEEEECCccHHHhhh
Confidence 445566777777777766666655321 0 1122333333211 1 11111134456666666 4
Q ss_pred hhHHHHHHhCCcEEecC
Q psy16503 93 LGTTEALYSGVPIIGIP 109 (244)
Q Consensus 93 ~s~~Eal~~gvP~i~vP 109 (244)
+.+.||-..++|+|.+.
T Consensus 89 ~~i~~A~~~~~Pvl~Is 105 (568)
T PRK07449 89 PAVIEAGLTGVPLIVLT 105 (568)
T ss_pred HHHHHHhhcCCcEEEEE
Confidence 67899999999999983
No 367
>COG3245 CycB Cytochrome c5 [Energy production and conversion]
Probab=20.44 E-value=84 Score=23.35 Aligned_cols=49 Identities=18% Similarity=0.228 Sum_probs=35.7
Q ss_pred HHhCCcEEecCCCcchhhHHHHHHHcCceeecC-----------C---CCCCHHHHHHHHHHHh
Q psy16503 99 LYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLP-----------Y---DQITEETVLVALRTVL 148 (244)
Q Consensus 99 l~~gvP~i~vP~~~dQ~~na~~~~~~G~g~~l~-----------~---~~~~~~~l~~ai~~ll 148 (244)
++|+.|+-+.|..+|.-.++-|+.+ |.-..++ + .+++.|++..+|+-+.
T Consensus 60 ~CHa~~~~GAPk~GdkAaW~PRiaq-G~dtL~~hai~GfnAMPpkG~ca~cSdDe~kAaId~M~ 122 (126)
T COG3245 60 ACHAAGLPGAPKTGDKAAWAPRIAQ-GKDTLLDHAINGFNAMPPKGGCADCSDDEVKAAIDFMA 122 (126)
T ss_pred HhccCCCCCCCCCCchhhhhhHHHh-chHHHHHHHhccccCCCCCCCcCCCCHHHHHHHHHHHH
Confidence 5689999999999999999999876 3332222 1 2467788888887654
No 368
>PTZ00370 STEVOR; Provisional
Probab=20.40 E-value=1.1e+02 Score=26.42 Aligned_cols=24 Identities=8% Similarity=0.077 Sum_probs=9.3
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy16503 198 LYWWQYILLDVIIALILLIAAMVWSI 223 (244)
Q Consensus 198 ~~~~~~~~lDv~~~~~~~~~~~~~~~ 223 (244)
+.-|.-|.+ .+++++++.++++++
T Consensus 251 saaF~Pygi--aalvllil~vvliil 274 (296)
T PTZ00370 251 SSAFYPYGI--AALVLLILAVVLIIL 274 (296)
T ss_pred HHhhcccHH--HHHHHHHHHHHHHHH
Confidence 333444433 333333333333333
No 369
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=20.36 E-value=2.3e+02 Score=26.93 Aligned_cols=27 Identities=26% Similarity=0.495 Sum_probs=21.5
Q ss_pred CeeEEEecCC------hhhHHHHHHhCCcEEec
Q psy16503 82 NVKVFISHGG------FLGTTEALYSGVPIIGI 108 (244)
Q Consensus 82 ~~~l~IthgG------~~s~~Eal~~gvP~i~v 108 (244)
+.-++++|.| .+++.||.+.++|+|.+
T Consensus 63 ~~gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I 95 (586)
T PRK06276 63 KVGVCVATSGPGATNLVTGIATAYADSSPVIAL 95 (586)
T ss_pred CCEEEEECCCccHHHHHHHHHHHHhcCCCEEEE
Confidence 4556677755 46789999999999998
No 370
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=20.31 E-value=79 Score=25.42 Aligned_cols=10 Identities=0% Similarity=-0.007 Sum_probs=2.4
Q ss_pred ceEEEEcCCC
Q psy16503 16 GVIYFSMGSI 25 (244)
Q Consensus 16 ~vI~vs~Gs~ 25 (244)
+..+|+.+..
T Consensus 104 ~P~~v~TsAr 113 (185)
T PF09936_consen 104 RPLLVATSAR 113 (185)
T ss_dssp --EEEE--SS
T ss_pred CCEEEEecCc
Confidence 3344444333
No 371
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=20.21 E-value=2.1e+02 Score=25.55 Aligned_cols=56 Identities=16% Similarity=0.216 Sum_probs=30.6
Q ss_pred CCchHHHHHHhcCC-CceEEEEcCCCCCCCCCCHHHHHHHHHHH-hcCCC---eEEEEecCC
Q psy16503 1 MNETDIKKFLDESV-NGVIYFSMGSIIQGKSFPSDKRKAFLRAF-EQIPQ---RVIWKWEGE 57 (244)
Q Consensus 1 ~~p~~l~~~l~~~~-~~vI~vs~Gs~~~~~~~~~~~~~~i~~al-~~~~~---~viw~~~~~ 57 (244)
|+|++..+..+..+ +.+|.+=+|+-......+.+ +.++.+.- .++.| .|||++|++
T Consensus 261 m~p~ea~~~a~~l~ak~vIpiH~dtf~~~~~dp~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (355)
T PRK11709 261 MTSIDILRMAESLNAKVVIPVHHDIWSNFQADPQE-ILVLWKMRKDRLQYGFHPFIWQVGGK 321 (355)
T ss_pred CCHHHHHHHHHHcCCCEEEEEChhhccccccCHHH-HHHHHHhhhhhccccccceEEecCCE
Confidence 56677666666544 56777777775443333333 33333221 23344 579998873
No 372
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=20.18 E-value=3.7e+02 Score=24.19 Aligned_cols=18 Identities=22% Similarity=0.159 Sum_probs=12.8
Q ss_pred hCCCCeeEEEecCChhhH
Q psy16503 78 LDHPNVKVFISHGGFLGT 95 (244)
Q Consensus 78 L~h~~~~l~IthgG~~s~ 95 (244)
....++|.+|.=||..++
T Consensus 102 ~r~~~~D~IiavGGGS~i 119 (395)
T PRK15454 102 LRESGCDGVIAFGGGSVL 119 (395)
T ss_pred HHhcCcCEEEEeCChHHH
Confidence 334689999999886443
No 373
>PRK13337 putative lipid kinase; Reviewed
Probab=20.11 E-value=1.2e+02 Score=26.05 Aligned_cols=30 Identities=20% Similarity=0.193 Sum_probs=24.2
Q ss_pred CCeeEEEecCChhhHHHHHHh------CCcEEecCC
Q psy16503 81 PNVKVFISHGGFLGTTEALYS------GVPIIGIPM 110 (244)
Q Consensus 81 ~~~~l~IthgG~~s~~Eal~~------gvP~i~vP~ 110 (244)
+..+++|..||=||+.|++.. ..|+-++|.
T Consensus 56 ~~~d~vvv~GGDGTl~~vv~gl~~~~~~~~lgiiP~ 91 (304)
T PRK13337 56 RKFDLVIAAGGDGTLNEVVNGIAEKENRPKLGIIPV 91 (304)
T ss_pred cCCCEEEEEcCCCHHHHHHHHHhhCCCCCcEEEECC
Confidence 557899999999999999862 347778896
No 374
>PRK15452 putative protease; Provisional
Probab=20.05 E-value=7e+02 Score=23.03 Aligned_cols=138 Identities=8% Similarity=0.073 Sum_probs=73.1
Q ss_pred chHHHHHHhcCCCceEEEEcCCC---CCCCCCCHHHHHHHHHHHhcCCCeEEEEecCCCCCCCCCCEEEeccCChhhhhC
Q psy16503 3 ETDIKKFLDESVNGVIYFSMGSI---IQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGKIDKILLKSWAPQRDILD 79 (244)
Q Consensus 3 p~~l~~~l~~~~~~vI~vs~Gs~---~~~~~~~~~~~~~i~~al~~~~~~viw~~~~~~~~~~~~nv~~~~~~pq~~lL~ 79 (244)
.+.++.-++.. -..||+.+.+. ....+++.+.+++.++-....+.++.+.+.. + +.+-.+..+.+..+-+.
T Consensus 13 ~e~l~aAi~~G-ADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~--i---~~e~el~~~~~~l~~l~ 86 (443)
T PRK15452 13 LKNMRYAFAYG-ADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNI--A---PHNAKLKTFIRDLEPVI 86 (443)
T ss_pred HHHHHHHHHCC-CCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecC--c---CCHHHHHHHHHHHHHHH
Confidence 45566666543 36899955432 2223456566777777666777788776652 1 11111112222223232
Q ss_pred CCCeeEEEe-cCChhhHHHHHHhCCcEEecCC-CcchhhHHHHHHHcCceeecCCCCCCHHHHHHHHHH
Q psy16503 80 HPNVKVFIS-HGGFLGTTEALYSGVPIIGIPM-FGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRT 146 (244)
Q Consensus 80 h~~~~l~It-hgG~~s~~Eal~~gvP~i~vP~-~~dQ~~na~~~~~~G~g~~l~~~~~~~~~l~~ai~~ 146 (244)
...+|.+|- .-|.-.+.-....+.|+.+=.. ..--..-++.+.+.|+-.+.-..+++-++|.+..+.
T Consensus 87 ~~gvDgvIV~d~G~l~~~ke~~p~l~ih~stqlni~N~~a~~f~~~lG~~rvvLSrELsl~EI~~i~~~ 155 (443)
T PRK15452 87 AMKPDALIMSDPGLIMMVREHFPEMPIHLSVQANAVNWATVKFWQQMGLTRVILSRELSLEEIEEIRQQ 155 (443)
T ss_pred hCCCCEEEEcCHHHHHHHHHhCCCCeEEEEecccCCCHHHHHHHHHCCCcEEEECCcCCHHHHHHHHhh
Confidence 245665555 4443333222233666655433 223344556677889866655568888888876533
No 375
>PF12496 BNIP2: Bcl2-/adenovirus E1B nineteen kDa-interacting protein 2; InterPro: IPR022181 This domain family is found in eukaryotes, and is typically between 119 and 133 amino acids in length. There is a conserved HGGY sequence motif. This family is Bcl2-/adenovirus E1B nineteen kDa-interacting protein 2. It interacts with pro- and anti- apoptotic molecules in the cell.
Probab=20.04 E-value=46 Score=25.07 Aligned_cols=9 Identities=67% Similarity=1.176 Sum_probs=7.3
Q ss_pred eEEEecCCh
Q psy16503 84 KVFISHGGF 92 (244)
Q Consensus 84 ~l~IthgG~ 92 (244)
+=+|+|||+
T Consensus 115 krViSHGGY 123 (127)
T PF12496_consen 115 KRVISHGGY 123 (127)
T ss_pred eeeeccCCc
Confidence 447999997
Done!