RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy16503
(244 letters)
>gnl|CDD|201077 pfam00201, UDPGT, UDP-glucoronosyl and UDP-glucosyl transferase.
Length = 500
Score = 197 bits (503), Expect = 2e-60
Identities = 85/206 (41%), Positives = 129/206 (62%), Gaps = 2/206 (0%)
Query: 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGKIDKILLKSWAPQ 74
+GV+ FS+GS++ + P +K A QIPQ+V+W+++G S L W PQ
Sbjct: 276 HGVVVFSLGSMV--SNIPEEKANEIASALAQIPQKVLWRFDGTKPSTLGRNTRLVKWLPQ 333
Query: 75 RDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQ 134
D+L HP + F++H G G EA+ GVP++G+P+FGDQ N + +E G VTL
Sbjct: 334 NDLLGHPKTRAFVTHAGSNGVYEAICHGVPMVGMPLFGDQMDNAKHMEAKGAAVTLNVLT 393
Query: 135 ITEETVLVALRTVLGNPSYKKRAEKVARLFQDRPMPPLDTAIYWIEHVIRHGGGAHLRPA 194
+T E +L AL+TV+ +PSYK+ +++ + D+P+ PLD A++WIE V+RH G HLRPA
Sbjct: 394 MTSEDLLNALKTVINDPSYKENIMRLSSIHHDQPVKPLDRAVFWIEFVMRHKGAKHLRPA 453
Query: 195 SLELYWWQYILLDVIIALILLIAAMV 220
+ +L W+QY LDVI L+ +A +
Sbjct: 454 AHDLTWYQYHSLDVIGFLLACVATVA 479
>gnl|CDD|223071 PHA03392, egt, ecdysteroid UDP-glucosyltransferase; Provisional.
Length = 507
Score = 177 bits (451), Expect = 9e-53
Identities = 70/216 (32%), Positives = 122/216 (56%), Gaps = 2/216 (0%)
Query: 6 IKKFLDESVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGKI-D 64
+++FL+ S NGV+Y S GS I ++ + LR F+++P V+WK++GE + +
Sbjct: 287 LEEFLNNSTNGVVYVSFGSSIDTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEVEAINLPA 346
Query: 65 KILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKA 124
+L + W PQR +L H NVK F++ GG T EA+ + VP++G+PM GDQ N +
Sbjct: 347 NVLTQKWFPQRAVLKHKNVKAFVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVEL 406
Query: 125 GFGVTLPYDQITEETVLVALRTVLGNPSYKKRAEKVARLFQDRPMPPLDTAIYWIEHVIR 184
G G L ++ +++A+ V+ NP Y+K +++ L + +PM PL AI++ EHVIR
Sbjct: 407 GIGRALDTVTVSAAQLVLAIVDVIENPKYRKNLKELRHLIRHQPMTPLHKAIWYTEHVIR 466
Query: 185 HGGGA-HLRPASLELYWWQYILLDVIIALILLIAAM 219
+ G L+ + + + Y + +++ L+
Sbjct: 467 NKHGNTSLKTKAANVSYSDYFMSYILVPLVTFTVMN 502
>gnl|CDD|224732 COG1819, COG1819, Glycosyl transferases, related to
UDP-glucuronosyltransferase [Carbohydrate transport and
metabolism / Signal transduction mechanisms].
Length = 406
Score = 98.7 bits (246), Expect = 6e-24
Identities = 52/175 (29%), Positives = 84/175 (48%), Gaps = 10/175 (5%)
Query: 16 GVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGKI--DKILLKSWAP 73
++Y S+G++ L A + RVI G + D +++ + P
Sbjct: 238 PIVYVSLGTVGNAVEL----LAIVLEALADLDVRVIVSLGGARDTLVNVPDNVIVADYVP 293
Query: 74 QRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYD 133
Q ++L P I HGG T+EALY+GVP++ IP DQ N VE+ G G+ LP++
Sbjct: 294 QLELL--PRADAVIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAERVEELGAGIALPFE 351
Query: 134 QITEETVLVALRTVLGNPSYKKRAEKVARLFQDRPMPPLDTAIYWIEHVIRHGGG 188
++TEE + A+ VL + SY++ AE++A F + A +E R
Sbjct: 352 ELTEERLRAAVNEVLADDSYRRAAERLAEEF--KEEDGPAKAADLLEEFAREKKK 404
>gnl|CDD|99960 cd03784, GT1_Gtf_like, This family includes the Gtfs, a group of
homologous glycosyltransferases involved in the final
stages of the biosynthesis of antibiotics vancomycin and
related chloroeremomycin. Gtfs transfer sugar moieties
from an activated NDP-sugar donor to the oxidatively
cross-linked heptapeptide core of vancomycin group
antibiotics. The core structure is important for the
bioactivity of the antibiotics.
Length = 401
Score = 94.7 bits (236), Expect = 1e-22
Identities = 44/150 (29%), Positives = 66/150 (44%), Gaps = 8/150 (5%)
Query: 17 VIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWK--WEGENMSGKIDKILLKSWAPQ 74
+Y GS+ P + + A + QR I W G D + + + P
Sbjct: 241 PVYVGFGSM--VVRDPEALARLDVEAVATLGQRAILSLGWGGLGAEDLPDNVRVVDFVPH 298
Query: 75 RDILDHPNVKVFISHGGFLGTT-EALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYD 133
+L P + HGG GTT AL +GVP + +P FGDQ V + G G L
Sbjct: 299 DWLL--PRCAAVVHHGGA-GTTAAALRAGVPQLVVPFFGDQPFWAARVAELGAGPALDPR 355
Query: 134 QITEETVLVALRTVLGNPSYKKRAEKVARL 163
++T E + ALR +L PS ++ A + R+
Sbjct: 356 ELTAERLAAALRRLLDPPSRRRAAALLRRI 385
>gnl|CDD|233407 TIGR01426, MGT, glycosyltransferase, MGT family. This model
describes the MGT (macroside glycosyltransferase)
subfamily of the UDP-glucuronosyltransferase family.
Members include a number of glucosyl transferases for
macrolide antibiotic inactivation, but also include
transferases of glucose-related sugars for macrolide
antibiotic production [Cellular processes, Toxin
production and resistance].
Length = 392
Score = 85.5 bits (212), Expect = 2e-19
Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 21/158 (13%)
Query: 17 VIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGK-ID---------KI 66
V+ S+G++ + PS R + AF + V+ G+ +D +
Sbjct: 227 VVLISLGTVFN--NQPSFYR-TCVEAFRDLDWHVVL------SVGRGVDPADLGELPPNV 277
Query: 67 LLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAGF 126
++ W PQ +IL + FI+HGG T EAL++GVP++ +P DQ R + + G
Sbjct: 278 EVRQWVPQLEILKKADA--FITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAELGL 335
Query: 127 GVTLPYDQITEETVLVALRTVLGNPSYKKRAEKVARLF 164
G LP +++T E + A+ VL +P Y +R K+
Sbjct: 336 GRHLPPEEVTAEKLREAVLAVLSDPRYAERLRKMRAEI 373
>gnl|CDD|215112 PLN02167, PLN02167, UDP-glycosyltransferase family protein.
Length = 475
Score = 64.8 bits (158), Expect = 4e-12
Identities = 47/180 (26%), Positives = 83/180 (46%), Gaps = 30/180 (16%)
Query: 6 IKKFLDESV-NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGK-- 62
I ++LD+ + V++ GS+ S P+ + K +A E + R +W N +
Sbjct: 270 IMRWLDDQPESSVVFLCFGSL---GSLPAPQIKEIAQALELVGCRFLWSIR-TNPAEYAS 325
Query: 63 -------------IDKILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIP 109
+ + L+ WAPQ +IL H + F+SH G+ E+L+ GVPI P
Sbjct: 326 PYEPLPEGFMDRVMGRGLVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIATWP 385
Query: 110 MFGDQKAN-IRVVEKAGFGVTLPYDQITEETVLV-------ALRTVL--GNPSYKKRAEK 159
M+ +Q+ N +V++ G V L D ++ +V A+R+++ + KK E
Sbjct: 386 MYAEQQLNAFTMVKELGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGEDVPRKKVKEI 445
>gnl|CDD|178032 PLN02410, PLN02410, UDP-glucoronosyl/UDP-glucosyl transferase
family protein.
Length = 451
Score = 64.3 bits (156), Expect = 6e-12
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 15/134 (11%)
Query: 2 NETDIKKFLDESVNGVIYFSMGS--------IIQGKSFPSDKRKAFLRAFEQIPQRVIWK 53
N++ I+ + N VI+ S+GS +++ S + FL P V
Sbjct: 251 NKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIR--PGSVRGS 308
Query: 54 WEGENMSGKIDKILLK-----SWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGI 108
E++ + KI+ WAPQ+++L HP V F SH G+ T E++ GVP+I
Sbjct: 309 EWIESLPKEFSKIISGRGYIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICK 368
Query: 109 PMFGDQKANIRVVE 122
P DQK N R +E
Sbjct: 369 PFSSDQKVNARYLE 382
>gnl|CDD|178584 PLN03007, PLN03007, UDP-glucosyltransferase family protein.
Length = 482
Score = 59.9 bits (145), Expect = 2e-10
Identities = 53/192 (27%), Positives = 88/192 (45%), Gaps = 34/192 (17%)
Query: 1 MNETDIKKFLD-ESVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIW------- 52
++E + K+LD + + VIY S GS SF +++ E Q IW
Sbjct: 270 IDEQECLKWLDSKKPDSVIYLSFGS---VASFKNEQLFEIAAGLEGSGQNFIWVVRKNEN 326
Query: 53 -----KW--EG--ENMSGKIDKILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGV 103
+W EG E GK ++++ WAPQ ILDH F++H G+ E + +G+
Sbjct: 327 QGEKEEWLPEGFEERTKGK--GLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAGL 384
Query: 104 PIIGIPMFGDQKANIRVVEK---------AGFGVTLPYDQITEETVLVALRTVLGNPSY- 153
P++ P+ +Q N ++V + A V + D I+ E V A+R V+
Sbjct: 385 PMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAE 444
Query: 154 --KKRAEKVARL 163
+ RA+K+A +
Sbjct: 445 ERRLRAKKLAEM 456
>gnl|CDD|215084 PLN00164, PLN00164, glucosyltransferase; Provisional.
Length = 480
Score = 59.7 bits (145), Expect = 2e-10
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 70 SWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKAN 117
+WAPQ++IL H V F++H G+ E+L+ GVP+ P++ +Q N
Sbjct: 345 TWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLYAEQHLN 392
>gnl|CDD|215247 PLN02448, PLN02448, UDP-glycosyltransferase family protein.
Length = 459
Score = 58.9 bits (143), Expect = 4e-10
Identities = 49/148 (33%), Positives = 74/148 (50%), Gaps = 13/148 (8%)
Query: 2 NETDIKKFLDES-VNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMS 60
NE D ++LD V+Y S+GS + S D+ A LR R +W GE
Sbjct: 260 NEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGV---RFLWVARGEASR 316
Query: 61 GKI---DKILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKAN 117
K D L+ W Q +L H +V F +H G+ T EA+++GVP++ P+F DQ N
Sbjct: 317 LKEICGDMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQPLN 376
Query: 118 IR-VVE--KAGFGVTLPYDQITEETVLV 142
+ +VE K G+ V ++ EET++
Sbjct: 377 SKLIVEDWKIGWRVK---REVGEETLVG 401
>gnl|CDD|177813 PLN02152, PLN02152, indole-3-acetate beta-glucosyltransferase.
Length = 455
Score = 58.1 bits (140), Expect = 7e-10
Identities = 49/174 (28%), Positives = 81/174 (46%), Gaps = 31/174 (17%)
Query: 17 VIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIW----------KWEGENMSGKIDKI 66
VIY S G++++ + + RA + + +W K EGE + +I+KI
Sbjct: 263 VIYVSFGTMVE---LSKKQIEELARALIEGKRPFLWVITDKLNREAKIEGEEET-EIEKI 318
Query: 67 -----------LLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQK 115
++ SW Q ++L H V F++H G+ + E+L GVP++ PM+ DQ
Sbjct: 319 AGFRHELEEVGMIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVAFPMWSDQP 378
Query: 116 ANIRVVE---KAGFGVTLPYDQITEE-TVLVALRTVLGNPSYKKR--AEKVARL 163
AN +++E K G V + + E + L V+ S + R AEK RL
Sbjct: 379 ANAKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEEKSVELRESAEKWKRL 432
>gnl|CDD|215293 PLN02534, PLN02534, UDP-glycosyltransferase.
Length = 491
Score = 57.6 bits (139), Expect = 1e-09
Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 66 ILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIR-VVEKA 124
+L+K WAPQ IL HP + F++H G+ T E + SGVP+I P+F +Q N + +VE
Sbjct: 346 LLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPMITWPLFAEQFLNEKLIVEVL 405
Query: 125 GFGVTL 130
GV +
Sbjct: 406 RIGVRV 411
>gnl|CDD|178170 PLN02555, PLN02555, limonoid glucosyltransferase.
Length = 480
Score = 57.5 bits (139), Expect = 1e-09
Identities = 24/54 (44%), Positives = 34/54 (62%)
Query: 64 DKILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKAN 117
DK + W PQ +L HP+V F++H G+ T EAL SGVP++ P +GDQ +
Sbjct: 337 DKGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQWGDQVTD 390
>gnl|CDD|177857 PLN02207, PLN02207, UDP-glycosyltransferase.
Length = 468
Score = 57.0 bits (137), Expect = 2e-09
Identities = 45/183 (24%), Positives = 82/183 (44%), Gaps = 25/183 (13%)
Query: 5 DIKKFLDESVNG-VIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMS--- 60
++ K+LD+ V++ GS+ K E R +W E ++
Sbjct: 264 ELMKWLDDQPEASVVFLCFGSM---GRLRGPLVKEIAHGLELCQYRFLWSLRTEEVTNDD 320
Query: 61 ----GKIDKI----LLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFG 112
G +D++ ++ W+PQ +IL H V F+SH G+ E+L+ GVPI+ PM+
Sbjct: 321 LLPEGFLDRVSGRGMICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPMYA 380
Query: 113 DQKAN-IRVVEKAGFGVTLPYDQ-------ITEETVLVALRTVLG--NPSYKKRAEKVAR 162
+Q+ N +V++ V L D + + A+R V+ N +KR +++
Sbjct: 381 EQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNKDNNVVRKRVMDISQ 440
Query: 163 LFQ 165
+ Q
Sbjct: 441 MIQ 443
>gnl|CDD|178572 PLN02992, PLN02992, coniferyl-alcohol glucosyltransferase.
Length = 481
Score = 56.1 bits (135), Expect = 3e-09
Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 3/100 (3%)
Query: 67 LLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVV-EKAG 125
++ SWAPQ +IL H V F++H G+ T E++ GVP+I P+F +Q N ++ ++ G
Sbjct: 341 VVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLSDELG 400
Query: 126 FGVTL--PYDQITEETVLVALRTVLGNPSYKKRAEKVARL 163
V P + I+ + +R V+ ++ KV +L
Sbjct: 401 IAVRSDDPKEVISRSKIEALVRKVMVEEEGEEMRRKVKKL 440
>gnl|CDD|215304 PLN02554, PLN02554, UDP-glycosyltransferase family protein.
Length = 481
Score = 55.6 bits (134), Expect = 5e-09
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 70 SWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKAN-IRVVEKAGFGV 128
WAPQ +L P + F++H G+ E+L+ GVP+ P++ +QK N +VE+ G V
Sbjct: 348 GWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWPLYAEQKFNAFEMVEELGLAV 407
Query: 129 ----TLPYDQITEETVLV 142
D + E V
Sbjct: 408 EIRKYWRGDLLAGEMETV 425
>gnl|CDD|215127 PLN02210, PLN02210, UDP-glucosyl transferase.
Length = 456
Score = 55.0 bits (132), Expect = 8e-09
Identities = 36/142 (25%), Positives = 71/142 (50%), Gaps = 14/142 (9%)
Query: 8 KFLDESV-NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIW----KWEGENMSG- 61
++LD+ + V+Y S GS+++ ++ + +A + +W K + +N+
Sbjct: 261 EWLDKQARSSVVYISFGSMLESLE---NQVETIAKALKNRGVPFLWVIRPKEKAQNVQVL 317
Query: 62 ----KIDKILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKAN 117
K + ++ W+PQ IL H + F++H G+ T E + +GVP++ P + DQ +
Sbjct: 318 QEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQPID 377
Query: 118 IR-VVEKAGFGVTLPYDQITEE 138
R +V+ G GV + D + E
Sbjct: 378 ARLLVDVFGIGVRMRNDAVDGE 399
>gnl|CDD|178581 PLN03004, PLN03004, UDP-glycosyltransferase.
Length = 451
Score = 53.2 bits (127), Expect = 4e-08
Identities = 21/66 (31%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 66 ILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKAN-IRVVEKA 124
+++KSWAPQ +L+H V F++H G+ EA+ +GVP++ P++ +Q+ N + +V++
Sbjct: 336 MVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRFNRVMIVDEI 395
Query: 125 GFGVTL 130
+++
Sbjct: 396 KIAISM 401
>gnl|CDD|178275 PLN02670, PLN02670, transferase, transferring glycosyl groups.
Length = 472
Score = 52.6 bits (126), Expect = 5e-08
Identities = 42/187 (22%), Positives = 77/187 (41%), Gaps = 26/187 (13%)
Query: 4 TDIKKFLD-ESVNGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIWKWEGENMSGK 62
IK++LD + VN V+Y ++G+ S ++ E+ W E + +
Sbjct: 266 VRIKEWLDKQRVNSVVYVALGT---EASLRREEVTELALGLEKSETPFFWVLRNEPGTTQ 322
Query: 63 IDKILLKS---------------WAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIG 107
+L W PQ IL H +V F++H G+ E L G +I
Sbjct: 323 NALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLIL 382
Query: 108 IPMFGDQKANIRVVEKAGFGVTLPYDQ----ITEETVLVALRTVL---GNPSYKKRAEKV 160
P+ +Q N R++ G+ +P D+ T ++V ++R + + +A+++
Sbjct: 383 FPVLNEQGLNTRLLHGKKLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEM 442
Query: 161 ARLFQDR 167
LF D
Sbjct: 443 RNLFGDM 449
>gnl|CDD|178589 PLN03015, PLN03015, UDP-glucosyl transferase.
Length = 470
Score = 50.5 bits (120), Expect = 3e-07
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 66 ILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVVEKAG 125
+++ WAPQ +IL H ++ F+SH G+ E+L GVPI+ P++ +Q N ++ +
Sbjct: 337 LVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQWMNATLLTEE- 395
Query: 126 FGVTLPYDQITEETVL 141
GV + ++ E V+
Sbjct: 396 IGVAVRTSELPSEKVI 411
>gnl|CDD|177830 PLN02173, PLN02173, UDP-glucosyl transferase family protein.
Length = 449
Score = 50.4 bits (120), Expect = 3e-07
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 64 DKILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKAN---IRV 120
DK L+ W+PQ +L + + F++H G+ T E L GVP++ +P + DQ N I+
Sbjct: 317 DKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAMPQWTDQPMNAKYIQD 376
Query: 121 VEKAGFGV 128
V K G V
Sbjct: 377 VWKVGVRV 384
>gnl|CDD|215305 PLN02562, PLN02562, UDP-glycosyltransferase.
Length = 448
Score = 49.9 bits (119), Expect = 4e-07
Identities = 42/164 (25%), Positives = 71/164 (43%), Gaps = 17/164 (10%)
Query: 15 NGVIYFSMGSIIQGKSFPSDKRKAFLRAFEQIPQRVIW----KWEGENMSGKIDKIL--- 67
N VIY S GS + + A E + IW W G ++++
Sbjct: 273 NSVIYISFGSWVS--PIGESNVRTLALALEASGRPFIWVLNPVWREGLPPGYVERVSKQG 330
Query: 68 -LKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIR-VVEKAG 125
+ SWAPQ ++L H V +++H G+ T EA+ ++ P+ GDQ N +V+
Sbjct: 331 KVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVNCAYIVDVWK 390
Query: 126 FGVTLPYDQITEETVLVALRTVLGNPSYKKRAEKVARLFQDRPM 169
GV + ++ V LR V+ + +R K+ ++R M
Sbjct: 391 IGVRI--SGFGQKEVEEGLRKVMEDSGMGERLMKL----RERAM 428
>gnl|CDD|215465 PLN02863, PLN02863, UDP-glucoronosyl/UDP-glucosyl transferase
family protein.
Length = 477
Score = 49.9 bits (119), Expect = 5e-07
Identities = 21/56 (37%), Positives = 33/56 (58%)
Query: 66 ILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVV 121
++++ WAPQ IL H V F++H G+ E L +GVP++ PM DQ N ++
Sbjct: 345 LVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAWPMAADQFVNASLL 400
>gnl|CDD|178364 PLN02764, PLN02764, glycosyltransferase family protein.
Length = 453
Score = 46.2 bits (109), Expect = 7e-06
Identities = 22/51 (43%), Positives = 29/51 (56%)
Query: 71 WAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVV 121
W Q IL HP+V F+SH GF E+L S I+ +P GDQ N R++
Sbjct: 324 WVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVLNTRLL 374
>gnl|CDD|223779 COG0707, MurG, UDP-N-acetylglucosamine:LPS N-acetylglucosamine
transferase [Cell envelope biogenesis, outer membrane].
Length = 357
Score = 43.1 bits (102), Expect = 7e-05
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 87 ISHGGFLGTTEALYSGVPIIGIP----MFGDQKANIRVVEKAGFGVTLPYDQITEETVLV 142
IS G L E L GVP I +P G Q+ N + +EKAG + + ++T E +
Sbjct: 257 ISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLEKAGAALVIRQSELTPEKLAE 316
Query: 143 ALRTVLGNPS-YKKRAEKVARLFQ 165
+ +L NP K AE +L +
Sbjct: 317 LILRLLSNPEKLKAMAENAKKLGK 340
>gnl|CDD|177807 PLN00414, PLN00414, glycosyltransferase family protein.
Length = 446
Score = 41.9 bits (98), Expect = 2e-04
Identities = 21/56 (37%), Positives = 30/56 (53%)
Query: 66 ILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVV 121
I+ + W Q IL HP+V F++H GF E+L S I+ IP DQ R++
Sbjct: 314 IVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLITRLL 369
>gnl|CDD|233077 TIGR00661, MJ1255, conserved hypothetical protein. This model
represents nearly the full length of MJ1255 from
Methanococcus jannaschii and of an unpublished protein
from Vibrio cholerae, as well as the C-terminal half of
a protein from Methanobacterium thermoautotrophicum. A
small region (~50 amino acids) within the domain appears
related to a family of sugar transferases [Hypothetical
proteins, Conserved].
Length = 321
Score = 39.1 bits (91), Expect = 0.001
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 82 NVKVFISHGGFLGTTEALYSGVPIIGIPMFG--DQKANIRVVEKAGFGVTLPY 132
N ++ I+HGGF +EAL G P+I IP G +Q N +E G G+ L Y
Sbjct: 247 NAELVITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLEDLGCGIALEY 299
>gnl|CDD|222200 pfam13528, Glyco_trans_1_3, Glycosyl transferase family 1.
Length = 317
Score = 38.8 bits (91), Expect = 0.001
Identities = 16/57 (28%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 86 FISHGGFLGTTEALYSGVPIIGIPMFG--DQKANIRVVEKAGFGVTLPYDQITEETV 140
I + GF +EALY G P++ +P+ G +Q +N +E+ G+G+ + + + +
Sbjct: 253 VICNAGFELLSEALYLGKPLLLVPLDGQFEQTSNALYLERLGYGIVMDMEDLDPAVL 309
>gnl|CDD|233284 TIGR01133, murG, undecaprenyldiphospho-muramoylpentapeptide
beta-N-acetylglucosaminyltransferase. RM 8449890 RT The
final step of peptidoglycan subunit assembly in
Escherichia coli occurs in the cytoplasm. RA Bupp K, van
Heijenoort J. RL J Bacteriol 1993 Mar;175(6):1841-3
[Cell envelope, Biosynthesis and degradation of murein
sacculus and peptidoglycan].
Length = 348
Score = 38.8 bits (91), Expect = 0.001
Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 87 ISHGGFLGTTEALYSGVPIIGIPM---FGDQKANIRVVEKAGFGVTLPYDQITEETVLVA 143
IS G E +GVP I IP DQ N + +E G G+ + ++ E +L A
Sbjct: 255 ISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEA 314
Query: 144 LRTVLGNP----SYKKRAEKVAR 162
L +L +P + + A K+A+
Sbjct: 315 LLKLLLDPANLEAMAEAARKLAK 337
>gnl|CDD|99961 cd03785, GT1_MurG, MurG is an N-acetylglucosaminyltransferase, the
last enzyme involved in the intracellular phase of
peptidoglycan biosynthesis. It transfers
N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the
C4 hydroxyl of a lipid-linked N-acetylmuramoyl
pentapeptide (NAM). The resulting disaccharide is then
transported across the cell membrane, where it is
polymerized into NAG-NAM cell-wall repeat structure.
MurG belongs to the GT-B structural superfamily of
glycoslytransferases, which have characteristic N- and
C-terminal domains, each containing a typical Rossmann
fold. The two domains have high structural homology
despite minimal sequence homology. The large cleft that
separates the two domains includes the catalytic center
and permits a high degree of flexibility.
Length = 350
Score = 37.8 bits (89), Expect = 0.003
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 97 EALYSGVPIIGIP----MFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPS 152
E G+P I IP Q AN R + KAG V +P +++T E + AL +L +P
Sbjct: 267 ELAALGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLSDPE 326
Query: 153 YKKRAEKVAR 162
K + AR
Sbjct: 327 RLKAMAEAAR 336
>gnl|CDD|177858 PLN02208, PLN02208, glycosyltransferase family protein.
Length = 442
Score = 37.3 bits (86), Expect = 0.005
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 71 WAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKANIRVV-EKAGFGVT 129
W Q ILDHP++ F++H G E+L S ++ IP DQ R++ E+ V
Sbjct: 318 WVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLMTEEFEVSVE 377
Query: 130 LPYDQ---ITEETVLVALRTVLGNPS 152
+ ++ ++E++ A+++V+ S
Sbjct: 378 VSREKTGWFSKESLSNAIKSVMDKDS 403
>gnl|CDD|217893 pfam04101, Glyco_tran_28_C, Glycosyltransferase family 28
C-terminal domain. The glycosyltransferase family 28
includes monogalactosyldiacylglycerol synthase (EC
2.4.1.46) and UDP-N-acetylglucosamine transferase (EC
2.4.1.-). Structural analysis suggests the C-terminal
domain contains the UDP-GlcNAc binding site.
Length = 167
Score = 34.6 bits (80), Expect = 0.021
Identities = 21/71 (29%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Query: 87 ISHGGFLGTTEALYSGVPIIGIP----MFGDQKANIRVVEKAGFGVTLPYDQITEETVLV 142
IS G E L G P I +P Q N + KAG + L ++T E ++
Sbjct: 77 ISRAGAGTIAELLALGKPAILVPRPKAAGEHQDNNALELVKAGAALVLLQKELTPEKLVE 136
Query: 143 ALRTVLGNPSY 153
AL +L P
Sbjct: 137 ALLKLLLKPLR 147
>gnl|CDD|234825 PRK00726, murG, undecaprenyldiphospho-muramoylpentapeptide beta-N-
acetylglucosaminyltransferase; Provisional.
Length = 357
Score = 34.7 bits (81), Expect = 0.033
Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Query: 102 GVPIIGIPMF-----GDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPS-YKK 155
G+P I +P Q AN R + AG + +P +T E + L +L +P +
Sbjct: 272 GLPAILVP-LPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLSDPERLEA 330
Query: 156 RAEKVARL 163
AE L
Sbjct: 331 MAEAARAL 338
>gnl|CDD|203546 pfam06917, Pectate_lyase_2, Periplasmic pectate lyase. This family
consists of several Enterobacterial periplasmic pectate
lyase proteins (EC:4.2.2.2). A major virulence
determinant of the plant-pathogenic enterobacterium
Erwinia chrysanthemi is the production of pectate lyase
enzymes that degrade plant cell walls.
Length = 533
Score = 31.7 bits (72), Expect = 0.33
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 140 VLVALRTVLGNPSYKKRAEKVARLFQDRPMPPLDTAIYWIEH 181
VLV L + G+ Y++RAE + R F D + +YW H
Sbjct: 63 VLVGLSVLTGDAKYQQRAECIVRYFFDNYQDE-NGLLYWGGH 103
>gnl|CDD|241408 cd13254, PH2_ARAP, ArfGAP with RhoGAP domain, ankyrin repeat and PH
domain Pleckstrin homology (PH) domain, repeat 2. ARAP
proteins (also called centaurin delta) are
phosphatidylinositol 3,4,5-trisphosphate-dependent
GTPase-activating proteins that modulate actin
cytoskeleton remodeling by regulating ARF and RHO family
members. They bind phosphatidylinositol
3,4,5-trisphosphate (PtdIns(3,4,5)P3) and
phosphatidylinositol 3,4-bisphosphate (PtdIns(3,4,5)P2)
binding. There are 3 mammalian ARAP proteins: ARAP1,
ARAP2, and ARAP3. All ARAP proteins contain a N-terminal
SAM (sterile alpha motif) domain, 5 PH domains, an
ArfGAP domain, 2 ankyrin domain, A RhoGap domain, and a
Ras-associating domain. This hierarchy contains the
second PH domain in ARAP. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with
high affinity and specificity. PH domains are
distinguished from other PIP-binding domains by their
specific high-affinity binding to PIPs with two vicinal
phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 90
Score = 28.4 bits (64), Expect = 1.0
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 78 LDHPNVKVFISHGG---FLGTTEALYS-GVPIIGIPMFGDQKANIRVVEKAGFGVTLPY 132
L KV+ + G +L E + G+ I I M AN++ V+K F +T PY
Sbjct: 14 LRGHKSKVYTALSGDKVWLYKNEQEFRLGIGITVIDMNV---ANVKDVDKRSFDLTTPY 69
>gnl|CDD|226742 COG4292, COG4292, Predicted membrane protein [Function unknown].
Length = 387
Score = 29.7 bits (67), Expect = 1.4
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 176 IYWI--EHVIRHGGGAHLRPASLELYWWQYILLDVIIALILLIAAMVWSI 223
+Y+ + H +H RP +L Y L ++I +I+L A + +S+
Sbjct: 248 LYFHIGQERASHKLESHGRPQTLAQLLLTYGHLPIVIGIIVLAAGLDFSL 297
>gnl|CDD|226046 COG3515, COG3515, Predicted component of the type VI protein
secretion system [Intracellular trafficking, secretion,
and vesicular transport].
Length = 346
Score = 29.7 bits (67), Expect = 1.5
Identities = 14/90 (15%), Positives = 26/90 (28%), Gaps = 3/90 (3%)
Query: 130 LPYDQITEETVLVALRTVLGNPSYKKRAE-KVARLFQDRPMPPLDTAIYWIEHVIRHGGG 188
L Q+ + + R E + AR + + L + E V+ G
Sbjct: 161 LLLRQLELKLSAELAALLAALQQTAARLETQAARDIKAAALTALRAGLLAAEQVLSRLPG 220
Query: 189 AHLRPASLELYWWQYILLDVIIALILLIAA 218
+ +L + A L+ A
Sbjct: 221 DAAPR--DRFLRQRLLLAQLPAAAGLIALA 248
>gnl|CDD|225103 COG2192, COG2192, Predicted carbamoyl transferase, NodU family
[Posttranslational modification, protein turnover,
chaperones].
Length = 555
Score = 29.2 bits (66), Expect = 2.2
Identities = 9/52 (17%), Positives = 17/52 (32%)
Query: 138 ETVLVALRTVLGNPSYKKRAEKVARLFQDRPMPPLDTAIYWIEHVIRHGGGA 189
L + G KK +++ L + ++EH + H A
Sbjct: 78 AGYLKRKPELFGKLLLKKLLKRLLAELDQFFGKGLPVKVLFVEHHLAHAASA 129
>gnl|CDD|211332 cd02558, PSRA_1, Pseudouridine synthase, a subgroup of the RluA
family. This group is comprised of bacterial proteins
assigned to the RluA family of pseudouridine synthases.
Pseudouridine synthases catalyze the isomerization of
specific uridines in an RNA molecule to pseudouridines
(5-ribosyluracil, psi). No cofactors are required. The
RluA family is comprised of proteins related to
Escherichia coli RluA.
Length = 246
Score = 28.8 bits (65), Expect = 2.6
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 114 QKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPS 152
Q ++ V +K F P + ET+LV LR GNP
Sbjct: 44 QDEHLLVADKPHFLPVTPRGRYVTETLLVRLRRQTGNPD 82
>gnl|CDD|236771 PRK10829, PRK10829, ribonuclease D; Provisional.
Length = 373
Score = 28.8 bits (65), Expect = 2.9
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 39 FLRAFEQIPQR-VIWKWEGENMSGKIDKILLKSWAPQRDILDHPNVKVFISHGG 91
F+R PQ +I ++GE +S ID + + W+P + +L P V F+ H G
Sbjct: 31 FVRTRTYYPQLGLIQLYDGEQLS-LIDPLGITDWSPFKALLRDPQVTKFL-HAG 82
>gnl|CDD|226414 COG3898, COG3898, Uncharacterized membrane-bound protein [Function
unknown].
Length = 531
Score = 28.3 bits (63), Expect = 3.9
Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 192 RPASLELYW--WQY-ILLDVIIALILLIAAMVWSIQWLVR 228
RP L L W QY + L V ++I+ + A V + WLVR
Sbjct: 24 RPGELSLIWQGQQYEMSLMVAASIIVALVAAVLLLWWLVR 63
>gnl|CDD|233780 TIGR02210, rodA_shape, rod shape-determining protein RodA. This
protein is a member of the FtsW/RodA/SpoVE family
(pfam01098). It is found only in species with rod (or
spiral) shapes. In many species, mutation of rodA has
been shown to correlate with loss of the normal rod
shape. Note that RodA homologs are found, scoring below
the cutoffs for this model, in a number of both
rod-shaped and coccoid bacteria, including four proteins
in Bacillus anthracis, for example [Cell envelope,
Biosynthesis and degradation of murein sacculus and
peptidoglycan, Cellular processes, Cell division].
Length = 352
Score = 27.9 bits (63), Expect = 6.0
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 199 YWWQYILLDVIIALILLIAAMVWSIQWLVRYALITY 234
+ L+ I L+L+I + ++L R A Y
Sbjct: 29 PFALKQLVWFGIGLVLMIIVALIDYRFLRRLAYPLY 64
>gnl|CDD|99991 cd03821, GT1_Bme6_like, This family is most closely related to the
GT1 family of glycosyltransferases. Bme6 in Brucella
melitensis has been shown to be involved in the
biosynthesis of a polysaccharide.
Length = 375
Score = 27.7 bits (62), Expect = 6.0
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 8/67 (11%)
Query: 96 TEALYSGVPIIGIPMFGDQKANIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSYKK 155
EAL G P++ K + + + G G + D + + ALR L P K
Sbjct: 299 AEALACGTPVV-----TTDKVPWQELIEYGCGWVVDDDV---DALAAALRRALELPQRLK 350
Query: 156 RAEKVAR 162
+ R
Sbjct: 351 AMGENGR 357
>gnl|CDD|223325 COG0247, GlpC, Fe-S oxidoreductase [Energy production and
conversion].
Length = 388
Score = 27.6 bits (61), Expect = 6.3
Identities = 21/110 (19%), Positives = 35/110 (31%), Gaps = 29/110 (26%)
Query: 57 ENMSGKIDKILLKSWAPQRDILDHPNVKVFISHGGFLGTTEALYSGVPIIGIPMFGDQKA 116
+ + V + G F T+ V KA
Sbjct: 123 AKELREKTGGKVPLPLLPLSE-YEAEGLVALFAGCF---TDYRDPEV----------GKA 168
Query: 117 NIRVVEKAGFGVTLPYDQITEETVLVALRTVLGNPSY----KKRAEKVAR 162
+R++EK G V LP ++ G P+Y +RA+K+A+
Sbjct: 169 AVRLLEKLGVEVVLPGEE-----------GCCGAPAYRSGFLERAKKLAK 207
>gnl|CDD|172161 PRK13595, ubiA, prenyltransferase; Provisional.
Length = 292
Score = 27.1 bits (60), Expect = 9.8
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 184 RHGG--GAHLRPASLELYWWQYILLDVIIALILLIAAMVWSIQWLVRYALI 232
R GG GA L P + +LL+ L L + + L+ YA +
Sbjct: 80 RKGGWQGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLLLLLYAAL 130
>gnl|CDD|225154 COG2245, COG2245, Predicted membrane protein [Function unknown].
Length = 182
Score = 26.6 bits (59), Expect = 9.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 198 LYWWQYILLDVIIALILLIAAMVWSI 223
LY+ ILL V + LI+++ A + I
Sbjct: 142 LYFIGAILLIVAVGLIIILIAAILEI 167
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.140 0.436
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,303,131
Number of extensions: 1333030
Number of successful extensions: 1835
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1826
Number of HSP's successfully gapped: 80
Length of query: 244
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 150
Effective length of database: 6,768,326
Effective search space: 1015248900
Effective search space used: 1015248900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.0 bits)